RPSBLAST alignment for GI: 254780273 and conserved domain: cd03224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.. Length = 222
Score = 77.4 bits (191), Expect = 8e-15
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376
+E + ++ Y ++ +S +P G IV ++G NGAGKTTL + + G P SG+I
Sbjct: 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 377 GETVC-----------LSYVDQSRDSLEAEKTVWEDI-SGGDDIVKLNGHEINSRAYCSA 424
G + + YV + R + E TV E++ G + R Y
Sbjct: 61 GRDITGLPPHERARAGIGYVPEGRR-IFPELTVEENLLLGAYARRRAKRKARLERVY-EL 118
Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466
F ++Q G+LSGG++ + +A+ L S ++LLDEP+
Sbjct: 119 FPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160