RPSBLAST alignment for GI: 254780273 and conserved domain: cd03240
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
Score = 64.1 bits (156), Expect = 1e-10
Identities = 50/215 (23%), Positives = 90/215 (41%), Gaps = 37/215 (17%)
Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR----MLTGDESPDSGT 373
+ + I +S+++R I+ S + ++G NGAGKTT+ LTG+ P+S
Sbjct: 4 LSIRNI-RSFHERSEIEFFS------PLTLIVGQNGAGKTTIIEALKYALTGELPPNSKG 56
Query: 374 IHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ 433
+ + + K +E+ +G + + + + +C G+
Sbjct: 57 GAHDPKLI-----REGEVRAQVKLAFENANGKKYTITRSLAILENVIFC-----HQGESN 106
Query: 434 ----QRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLS-ALEDALE 482
G SGG++ R+ LA+ S ++ LDEPT +LD E + +L + +E
Sbjct: 107 WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIE 166
Query: 483 NFAGCAV----IISHDRMFLDRLATHILAFEGNGH 513
+I+HD +D A HI E +G
Sbjct: 167 ERKSQKNFQLIVITHDEELVDA-ADHIYRVEKDGR 200