RPSBLAST alignment for GI: 254780273 and conserved domain: cd03294
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.. Length = 269
Score = 63.7 bits (155), Expect = 1e-10
Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357
++P A ++ GK + I K + ++++S + G I ++G +G+GK+
Sbjct: 12 KNPQKAFKLLAKGKS-------KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKS 64
Query: 358 TLFRMLTGDESPDSGTIHV-GETVC--------------LSYVDQSRDSLEAEKTVWEDI 402
TL R + P SG + + G+ + +S V QS +L +TV E++
Sbjct: 65 TLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF-ALLPHRTVLENV 123
Query: 403 SGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVI 460
+ G ++ + E RA A G G + + LSGG + RV LA+ L +++
Sbjct: 124 AFGLEVQGVPRAEREERAA-EALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182
Query: 461 LLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494
L+DE + LD E L V I+HD
Sbjct: 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHD 220