RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] (539 letters) >gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed. Length = 556 Score = 1058 bits (2738), Expect = 0.0 Identities = 341/538 (63%), Positives = 427/538 (79%), Gaps = 7/538 (1%) Query: 1 MARKFIYHMAGLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY 59 M ++IY M +SKV KK +L DI+LSF+P AKIG+LG NGAGKST+LRIMAG+DKE+ Sbjct: 1 MMAQYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEF 60 Query: 60 NGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE------ 113 GEA A G VGYLPQEPQLD KTV+EN+ EGVA +A LDR+NE+ Y+E Sbjct: 61 EGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD 120 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173 E +LQ+IID+ WDL++++++A+++L CP +T LSGGE+RRVALC+LLL Sbjct: 121 ALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLE 180 Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIP 233 PD+LLLDEPTNHLDAE++AW+E++L +Y G V+ VTHDRYFLDNV WILE+DRG+GIP Sbjct: 181 KPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIP 240 Query: 234 YQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVE 293 ++GNYS++L+ KAKR+AQE ++E +RQKA++RE +W+ SPKARQ+KSKAR+ YEEL+ Sbjct: 241 WEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLS 300 Query: 294 SAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNG 353 + +I IP G RLG VIEA+ +SKS+ DRLLID+LSF LPPGGIVG+IGPNG Sbjct: 301 EEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNG 360 Query: 354 AGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNG 413 AGK+TLF+M+TG E PDSGTI +GETV L+YVDQSRD+L+ KTVWE+ISGG DI+K+ Sbjct: 361 AGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGN 420 Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 EI SRAY FNFKGGDQQ+++G LSGG+R R+HLAK LK GGNV+LLDEPTNDLD ET Sbjct: 421 REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVET 480 Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531 L ALE+AL F GCAV+ISHDR FLDR+ATHILAFEG+ VEWFEGNF+EYE+DK R Sbjct: 481 LRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKKRR 538 Score = 90.2 bits (225), Expect = 1e-18 Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 3/98 (3%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216 LSGGE+ R+ L K L ++LLLDEPTN LD ET+ +E+ L E+ G ++++HDR+FL Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFL 505 Query: 217 DNVTNWIL--EVDRGKGIPYQGNYSAYLQMKAKRMAQE 252 D + IL E D + ++GN+ Y + K +R+ + Sbjct: 506 DRIATHILAFEGD-SQVEWFEGNFQEYEEDKKRRLGAD 542 >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 Score = 962 bits (2489), Expect = 0.0 Identities = 345/536 (64%), Positives = 432/536 (80%), Gaps = 7/536 (1%) Query: 3 RKFIYHMAGLSKVFGSKK-VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG 61 ++IY M +SKV KK +L DI+LSF+P AKIG+LG NGAGKST+LRIMAG+DKE+NG Sbjct: 1 AQYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG 60 Query: 62 EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE---- 117 EA A G VGYLPQEPQLD +KTV+EN+ EGVA + LDR+NE+ ++E + Sbjct: 61 EARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDAL 120 Query: 118 --EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 E A+LQ+IID+ WDL+ ++++A+++L CP ++T LSGGE+RRVALC+LLLS P Sbjct: 121 LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKP 180 Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQ 235 D+LLLDEPTNHLDAE++AW+E++L+EY G V+ VTHDRYFLDNV WILE+DRG+GIP++ Sbjct: 181 DMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240 Query: 236 GNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESA 295 GNYS++L+ K KR+ QE +EE +RQKA++RE +W+ SSPKARQ+KSKAR+ YEEL+ Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQE 300 Query: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAG 355 + A+I IP G RLG VIEA+ +SK + D+LLID+LSFKLPPGGIVGVIGPNGAG Sbjct: 301 FQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAG 360 Query: 356 KTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE 415 K+TLFRM+TG E PDSGTI +GETV L+YVDQSRD+L+ KTVWE+ISGG DI++L E Sbjct: 361 KSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE 420 Query: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 + SRAY FNFKG DQQ+++G LSGG+R RVHLAK LKSGGNV+LLDEPTNDLD ETL Sbjct: 421 VPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480 Query: 476 ALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531 ALE+AL FAGCAV+ISHDR FLDR+ATHILAFEG+ HVEWFEGN+ EYE+DK R Sbjct: 481 ALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKKRR 536 Score = 131 bits (333), Expect = 3e-31 Identities = 84/247 (34%), Positives = 127/247 (51%), Gaps = 38/247 (15%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 LSK FG K ++DD++ P +G++GPNGAGKST+ R++ G ++ +G + G T Sbjct: 327 NLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGT--IKIGET 384 Query: 71 V--GYLPQEPQ-LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 V Y+ Q LD +KTV EEI+ DII Sbjct: 385 VKLAYVDQSRDALDPNKTV-----------------------------WEEISGGLDIIQ 415 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 G ++ + V + + LSGGE+ RV L K L S ++LLLDEPTN L Sbjct: 416 L-GKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474 Query: 188 DAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWIL--EVDRGKGIPYQGNYSAYLQMK 245 D ET+ +E+ L E++G ++++HDR+FLD + IL E D ++GNYS Y + K Sbjct: 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGD-SHVEWFEGNYSEYEEDK 533 Query: 246 AKRMAQE 252 +R+ ++ Sbjct: 534 KRRLGED 540 >gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed. Length = 635 Score = 370 bits (951), Expect = e-103 Identities = 184/519 (35%), Positives = 298/519 (57%), Gaps = 17/519 (3%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG---IDKEYNGEAWLATGFTVG 72 F +LD+ L + ++ ++G NGAGKST+++I+ G +D +G V Sbjct: 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLD---DGRIIYEQDLIVA 69 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNEL----MMNYSEKTEEEIAKLQDIIDS 128 L Q+P ++ TV + + EG+ + L RY+++ + SEK E+AKLQ+ +D Sbjct: 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDH 129 Query: 129 KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 LW LE + + L D ++SLSGG R+ AL + L+S+PD+LLLDEPTNHLD Sbjct: 130 HNLWQLENRINEVLAQLGLDPDAA-LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188 Query: 189 AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK- 247 ETI W+E +L+ + G+++ ++HDR F+ N+ I+++DRGK + Y GNY YL K + Sbjct: 189 IETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEA 248 Query: 248 -RMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEEL-VESAAHRH-PGNAQ 304 R+ + E R+ A +E WI KAR+++++ R+R+ + L E + R G A+ Sbjct: 249 LRVEELQNAEFDRKLA--QEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAK 306 Query: 305 IIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364 + + R G +V E + ++ + + L+ + S ++ G + +IGPNG GKTTL +++ Sbjct: 307 MQVEEASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLML 366 Query: 365 GDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 G DSG IH G + ++Y DQ R L+ EKTV ++++ G V +NG + Y Sbjct: 367 GQLQADSGRIHCGTKLEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQD 426 Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF 484 F F + +LSGG+R R+ LA++ N+++LDEPTNDLD ETL LE+ L+++ Sbjct: 427 FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY 486 Query: 485 AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 G +++SHDR F+D T FEGNG + + G + + Sbjct: 487 QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 Score = 120 bits (304), Expect = 7e-28 Identities = 93/296 (31%), Positives = 142/296 (47%), Gaps = 49/296 (16%) Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 K ++ M ++ K+++ D + KI ++GPNG GK+T+L++M G + +G Sbjct: 317 KIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376 Query: 64 WLATGFTVGYLPQ-EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122 T V Y Q +LD KTV +N+ EG KQ E+M+N + + L Sbjct: 377 HCGTKLEVAYFDQHRAELDPEKTVMDNLAEG---KQ-------EVMVN--GRPRHVLGYL 424 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLN-ITSLSGGEKRRVALCKLLLSSPDLLLLD 181 QD L P + + +LSGGE+ R+ L +L L +LL+LD Sbjct: 425 QDF-------------------LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILD 465 Query: 182 EPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDN-VTN-WILEVDRGKGI--PYQGN 237 EPTN LD ET+ +E+ L Y G VL+V+HDR F+DN VT WI E G G Y G Sbjct: 466 EPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFE---GNGKIGRYVGG 522 Query: 238 YSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVE 293 Y Q +A+ +A + +++ ++PKA K ++ SY+ E Sbjct: 523 YHDARQQQAQYLALKQPAVKKKEE---------AAAPKAETVKRSSKKLSYKLQRE 569 >gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional. Length = 638 Score = 244 bits (624), Expect = 5e-65 Identities = 163/524 (31%), Positives = 277/524 (52%), Gaps = 32/524 (6%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 G + +LD+ + P K+G++G NG GKST+L ++ G + + ++ Q Sbjct: 12 GVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQ 71 Query: 77 E-PQLDLSKTVKENIIEGVAHKQAILDR-YNELMMNYSEKTEEE----IAKLQDIIDSKG 130 E P L E +I+G DR Y +L + E IA + +D+ Sbjct: 72 ETPALPQPAL--EYVIDG--------DREYRQLEAQLHDANERNDGHAIATIHGKLDAID 121 Query: 131 LWDLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 W + + + L + L ++ SGG + R+ L + L+ DLLLLDEPTNHLD Sbjct: 122 AWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181 Query: 189 AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKR 248 + + W+EK+L+ Y G +++++HDR FLD + + I+ +++ Y GNYS++ +A R Sbjct: 182 LDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATR 241 Query: 249 MAQENREEISRQKAIERERDWI----VSSPKARQSKSKARIRSYEELVESAAHRHPGNAQ 304 +AQ+ S+Q+ + + +I + KA+Q++S+ ++ EL+ A +P + Sbjct: 242 LAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFS 301 Query: 305 IIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT 364 P + L + +++ + +S Y DR+++D++ L PG +G++G NGAGK+TL ++L Sbjct: 302 FRAP--ESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLA 359 Query: 365 GDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS--RAYC 422 G+ +P SG I + + + L Y Q + LE + D S + +L E+ R Y Sbjct: 360 GELAPVSGEIGLAKGIKLGYFAQHQ--LEFLRA---DESPLQHLARLAPQELEQKLRDYL 414 Query: 423 SAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482 F F+G + SGG++ R+ LA I+ N++LLDEPTN LD + AL +AL Sbjct: 415 GGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALI 474 Query: 483 NFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 +F G V++SHDR L R T L +G VE F+G+ E+Y++ Sbjct: 475 DFEGALVVVSHDRHLL-RSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 Score = 111 bits (278), Expect = 6e-25 Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 43/282 (15%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68 M +S +G + +LD I L+ P ++IG+LG NGAGKST+++++AG +GE LA G Sbjct: 315 MEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG 374 Query: 69 FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDS 128 +GY Q QL+ + E+ ++ H + + E KL+D + Sbjct: 375 IKLGYFAQH-QLEFLRA-DESPLQ---HLARLAPQELE-------------QKLRDYLGG 416 Query: 129 KGLW-DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 G D TE SGGEK R+ L ++ P+LLLLDEPTNHL Sbjct: 417 FGFQGDKVTE---------------ETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHL 461 Query: 188 DAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK 247 D + + + L ++ GA+++V+HDR+ L + T+ + V GK P+ G+ Y Q + Sbjct: 462 DLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSD 521 Query: 248 RMAQENREEISRQKAIERERDWIVSSPKAR--QSKSKARIRS 287 QEN+ + E ++ +S +AR Q + +A +R+ Sbjct: 522 VQKQENQTD-------EAPKENNANSAQARKDQKRREAELRT 556 >gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional. Length = 530 Score = 237 bits (606), Expect = 6e-63 Identities = 172/546 (31%), Positives = 276/546 (50%), Gaps = 70/546 (12%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75 FG+K + ++I++ F + G++G NG GKST ++I+ G + G L +G L Sbjct: 11 FGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKLR 70 Query: 76 QEPQLDLSK-TVKENIIEGVAHKQ--AILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 Q+ Q + TV + +I G H + + + + E +EE+ K+ D Sbjct: 71 QD-QFAFEEFTVLDTVIMG--HTELWEVKQERDRIYAL-PEMSEEDGMKVAD-------- 118 Query: 133 DLETE-----------------VQVAI-ESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 LE + + V I E H GL ++ ++ G K RV L + L S+ Sbjct: 119 -LEVKFAEMDGYTAEARAGELLLGVGIPEEQH---YGL-MSEVAPGWKLRVLLAQALFSN 173 Query: 175 PDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 PD+LLLDEPTN+LD TI W+E L E + +++++HDR+FL++V + ++D G+ Y Sbjct: 174 PDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVY 233 Query: 235 QGNYSAYLQMKAKRMAQENREEISRQKAIER--ERDWIVS-----SPKARQSKSKAR--- 284 GNY Y M A A+E R K + E VS + KA+Q+ S+A+ Sbjct: 234 PGNYDEY--MTAATQARE-RLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQID 290 Query: 285 -IRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPG 343 I+ E V+ ++ ++P I K+L +E + ++K +++ L NL+ L G Sbjct: 291 KIKLEE--VKPSSRQNP---FIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAG 345 Query: 344 GIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ-SRDSLEAEKTVWEDI 402 + +IG NG GKTTL R L G+ PDSGT+ E + Y Q E + T+++ + Sbjct: 346 ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWM 405 Query: 403 S----GGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458 S GDD E R F D ++ + LSGG++GR+ K++ N Sbjct: 406 SQWRQEGDD-------EQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPN 458 Query: 459 VILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFE 518 V+++DEPTN +D E++ +L ALE + G + +SHDR F+ LAT I+ +G V+ F Sbjct: 459 VLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVD-FS 517 Query: 519 GNFEEY 524 G +EEY Sbjct: 518 GTYEEY 523 Score = 118 bits (297), Expect = 6e-27 Identities = 60/242 (24%), Positives = 105/242 (43%), Gaps = 43/242 (17%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 L+K F + + ++NL ++ I+G NG GK+T+LR + G + +G + Sbjct: 324 NLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENAN 383 Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130 +GY Q+ + + D Sbjct: 384 IGYYAQD-------------------------------------HAYDFENDLTLFDWMS 406 Query: 131 LW----DLETEVQVAIESLHCPADGLN--ITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 W D E V+ + L D + + LSGGEK R+ KL++ P++L++DEPT Sbjct: 407 QWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 Query: 185 NHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQM 244 NH+D E+I + L +Y G ++ V+HDR F+ ++ I+E+ + + G Y YL+ Sbjct: 467 NHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 Query: 245 KA 246 + Sbjct: 527 QG 528 Score = 42.6 bits (101), Expect = 3e-04 Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ I+ + + L +N+S K G G+IG NG GK+T ++L GD P +G + + Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 >gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional. Length = 718 Score = 162 bits (411), Expect = 2e-40 Identities = 157/558 (28%), Positives = 251/558 (44%), Gaps = 61/558 (10%) Query: 8 HMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-----GIDK----- 57 HM S G + ++ D +++ G++G NG GK+T LR MA GI K Sbjct: 179 HMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQIL 238 Query: 58 ----EYNGEAWLATGFTVG-------YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNE 106 E G+ A + L +E QL + E E K A D ++ Sbjct: 239 HVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDK 298 Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPAD--GLNITSLSGGEKRR 164 ++ + EEI K ++ID+ + E + L + + SGG + R Sbjct: 299 DAVS---QRLEEIYKRLELIDA---YTAEARAASILAGLSFTPEMQVKATKTFSGGWRMR 352 Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWIL 224 +AL + L PDLLLLDEPTNHLD + W+E YL ++ ++V+H R FL+ V IL Sbjct: 353 IALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDIL 412 Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAI---ERERDWIVS------SPK 275 + K + Y+G+Y + + + +++ + QKA ER R + + Sbjct: 413 HLHGQKLVTYKGDYDTFERTREEQLKNQ-------QKAFESNERSRSHMQAFIDKFRYNA 465 Query: 276 ARQSKSKARIRSYEELVESAAHRHPGNAQIIIPV-GKRLGHVVIEAKGISKSY-NDRLLI 333 R S ++RI++ + L A + + + P R G +I S Y LL Sbjct: 466 KRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLF 525 Query: 334 DNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR-DSL 392 NL+F + + ++GPNG GK+T+ ++++G+ P SGT+ V ++ Q D L Sbjct: 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGL 585 Query: 393 EAEKTVWEDISGGDDIVKLNGH----EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVH 448 D+S + + E RA+ +F G Q + +LSGGQ+ RV Sbjct: 586 --------DLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVA 637 Query: 449 LAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAF 508 AKI +++LLDEP+N LD + + AL L F G +++SHD + + L Sbjct: 638 FAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISG-SVDELWV 696 Query: 509 EGNGHVEWFEGNFEEYEK 526 G V F G F +Y+K Sbjct: 697 VSEGKVTPFHGTFHDYKK 714 Score = 83.8 bits (207), Expect = 9e-17 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 36/230 (15%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 G + ++N D++I ++GPNG GKSTIL++++G + +G + + + Q Sbjct: 520 GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQ 579 Query: 77 E--PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134 LDLS +L MM E+ KL+ + S G+ Sbjct: 580 HHVDGLDLSSN-------------PLL-----YMMRCFPGVPEQ--KLRAHLGSFGV--- 616 Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW 194 +A++ ++ +LSGG+K RVA K+ P +LLLDEP+NHLD + + Sbjct: 617 --TGNLALQPMY---------TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665 Query: 195 MEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQM 244 + + L + G VLMV+HD + + + + V GK P+ G + Y + Sbjct: 666 LIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKKT 715 Score = 68.7 bits (168), Expect = 3e-12 Identities = 69/260 (26%), Positives = 105/260 (40%), Gaps = 47/260 (18%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR---MLTGDESPDSGTI 374 I + S S R LI + S L G G++G NG GKTT R M D P + I Sbjct: 178 IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI 237 Query: 375 -HVGETV---------CLSYVDQSRDSL--------EAEKTVWEDISGGDDIVKLNG--- 413 HV + V C+ D R L ++ + + G Sbjct: 238 LHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVD 297 Query: 414 --------HEINSR-----AYCS---------AFNFKGGDQQQRIGSLSGGQRGRVHLAK 451 EI R AY + +F Q + + SGG R R+ LA+ Sbjct: 298 KDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALAR 357 Query: 452 ILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGN 511 L +++LLDEPTN LD + LE L + +++SH R FL+ + T IL G Sbjct: 358 ALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQ 417 Query: 512 GHVEWFEGNFEEYEKDKLSR 531 V ++G+++ +E+ + + Sbjct: 418 KLVT-YKGDYDTFERTREEQ 436 >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional. Length = 590 Score = 119 bits (302), Expect = 1e-27 Identities = 133/529 (25%), Positives = 203/529 (38%), Gaps = 154/529 (29%) Query: 35 IGILGPNGAGKSTILRIMAGIDK----EYNGEA-W-----------LATGFTVGYLPQEP 78 GILGPNG GK+T ++I++G +Y E W L F Sbjct: 102 TGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF--------- 152 Query: 79 QLDLSKTVKENIIEGVAHK-QAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 K + I+ V HK Q + + + + K E + K +D +G D E Sbjct: 153 -----KKLYNGEIK-VVHKPQYV----DLIPKVFKGKVRELLKK----VDERGKLD---E 195 Query: 138 VQVAIESLHCPADGL------NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD-AE 190 V +E L GL +I+ LSGGE +RVA+ LL D DEPT++LD + Sbjct: 196 V---VERL-----GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQ 247 Query: 191 TIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKR 248 + + + +RE + VL+V HD LD + + + I Y G AY Sbjct: 248 RLN-VARLIRELAEGKYVLVVEHDLAVLDYLADNVH-------IAY-GEPGAY------- 291 Query: 249 MAQENREEISRQKAIERERDWIVSSPK-ARQ----------SKSKARIRSYEELVESAAH 297 +VS PK R + RIR E Sbjct: 292 --------------------GVVSKPKGVRVGINEYLKGYLPEENMRIRPEPIEFEERPP 331 Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLP-------PGGIVGVIG 350 R ++E ++K D F L G ++G++G Sbjct: 332 RDESE-----------RETLVEYPDLTKKLGD--------FSLEVEGGEIYEGEVIGIVG 372 Query: 351 PNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ--SRDSLEAEKTVWEDISGGDDI 408 PNG GKTT ++L G PD G V + +SY Q D + TV +D+ Sbjct: 373 PNGIGKTTFAKLLAGVLKPDEGE--VDPELKISYKPQYIKPDY---DGTV-------EDL 420 Query: 409 VKLNGHEINSRAYCSAFNFKGGDQ---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEP 465 ++ ++ S Y S + + + LSGG+ RV +A L ++ LLDEP Sbjct: 421 LRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480 Query: 466 TNDLDTE----TLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEG 510 + LD E A+ E A+++ HD +D ++ ++ FEG Sbjct: 481 SAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 Score = 42.9 bits (102), Expect = 2e-04 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%) Query: 338 FKLP---PGGIVGVIGPNGAGKTTLFRMLTG 365 + LP G + G++GPNG GKTT ++L+G Sbjct: 91 YGLPIPKEGKVTGILGPNGIGKTTAVKILSG 121 >gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 Score = 117 bits (296), Expect = 6e-27 Identities = 66/235 (28%), Positives = 101/235 (42%), Gaps = 47/235 (20%) Query: 9 MAGLSKVFG--SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE---- 62 +GLS + L ++ + P ++ ++GP+GAGKST+L ++ G G Sbjct: 323 FSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVN 382 Query: 63 -----AWLATGF--TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKT 115 A + + ++PQ P L + T+ ENI +A A + Sbjct: 383 GVPLADADADSWRDQIAWVPQHPFL-FAGTIAENI--RLARPDA---------------S 424 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 + EI + ++ GL + V + L G LSGG+ +R+AL + L Sbjct: 425 DAEI---RRALERAGLDEF---VAALPQGLDTLI-GEGGAGLSGGQAQRLALARAFLRDA 477 Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDR 228 LLLLDEPT HLDAET A + + LR + VL+VTH DR Sbjct: 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRL-------ALAERADR 525 Score = 92.4 bits (230), Expect = 2e-19 Identities = 61/216 (28%), Positives = 94/216 (43%), Gaps = 34/216 (15%) Query: 317 VIEAKGISKSYNDR--LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +E G+S +Y R + +SF +PPG V ++GP+GAGK+TL +L G P G+I Sbjct: 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379 Query: 375 HV-GETVCLSYVDQSRDSLE--------AEKTVWEDISGG-----DDIVKLNGHEINSRA 420 V G + + D RD + T+ E+I D ++ RA Sbjct: 380 AVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIR----RALERA 435 Query: 421 YCSAF--------NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 F + G+ LSGGQ R+ LA+ ++LLDEPT LD E Sbjct: 436 GLDEFVAALPQGLDTLIGEGGAG---LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAE 492 Query: 473 TLSALEDALENFAGCA--VIISHDRMFLDRLATHIL 506 T + + +AL A ++++H A I+ Sbjct: 493 TEALVTEALRALAQGRTVLLVTHRLALA-ERADRIV 527 >gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 529 Score = 101 bits (253), Expect = 5e-22 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 53/216 (24%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----------A 66 GS VLD ++L P ++ ILGP+G+GKST+L ++ G+ GE L Sbjct: 346 GSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDE 405 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 + Q+ L TV++N L + + T+EE+ + Sbjct: 406 LRRRISVFAQDAHL-FDTTVRDN-----------------LRLGRPDATDEELW---AAL 444 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNI------TSLSGGEKRRVALCKLLLSSPDLLLL 180 + GL D + SL DGL+ LSGGE++R+AL + LL+ +LLL Sbjct: 445 ERVGLADW-------LRSL---PDGLDTVLGEGGARLSGGERQRLALARALLADAPILLL 494 Query: 181 DEPTNHLDAET----IAWMEKYLREYSGAVLMVTHD 212 DEPT HLDA T + + L V+++TH Sbjct: 495 DEPTEHLDAGTESELLEDLLAALSGK--TVVVITHH 528 Score = 80.9 bits (200), Expect = 8e-16 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 29/205 (14%) Query: 313 LGHVVIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371 LG +E + +S Y ++D +S LPPG V ++GP+G+GK+TL +LTG P Sbjct: 330 LGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQ 389 Query: 372 GTIHVGETVCLSYVDQSRD--SLEAEK------TVWEDI------SGGDDI------VKL 411 G + + S D+ R S+ A+ TV +++ + +++ V L Sbjct: 390 GEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGL 449 Query: 412 NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 R+ + G+ R LSGG+R R+ LA+ L + ++LLDEPT LD Sbjct: 450 ---ADWLRSLPDGLDTVLGEGGAR---LSGGERQRLALARALLADAPILLLDEPTEHLDA 503 Query: 472 ETLSA-LEDALENFAGCAVI-ISHD 494 T S LED L +G V+ I+H Sbjct: 504 GTESELLEDLLAALSGKTVVVITHH 528 >gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. Length = 206 Score = 99.6 bits (249), Expect = 2e-21 Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 49/225 (21%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65 + +SK FG K +LDD+NL+ I+G +G+GKST+L I+ ++K +G+ +L Sbjct: 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGK 60 Query: 66 ---------ATGF---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE 113 A+ F +GYL Q L ++TV+EN+ +L + Y + Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL---------------DLGLKYKK 105 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIE-SLHCPADGLNITSLSGGEKRRVALCKLLL 172 +++E + + E +V + L I LSGGE++RVAL + +L Sbjct: 106 LSKKEKREKK----------KEALEKVGLNLKLKQK-----IYELSGGEQQRVALARAIL 150 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRY 214 P L+L DEPT LD + + L E + +++VTHD Sbjct: 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE 195 Score = 92.3 bits (230), Expect = 3e-19 Identities = 59/194 (30%), Positives = 95/194 (48%), Gaps = 22/194 (11%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV 380 K ISK + D++++D+L+ + G + +IG +G+GK+TL ++ E DSG +++ Sbjct: 2 KNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKE 61 Query: 381 C---------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425 L Y+ Q+ +E E TV E++ G KL+ E + A Sbjct: 62 TPPLNSKKASKFRREKLGYLFQNFALIENE-TVEENLDLGLKYKKLSKKEKREKKK-EAL 119 Query: 426 NFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE- 482 G +Q+I LSGG++ RV LA+ + +IL DEPT LD + + D L Sbjct: 120 EKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLE 179 Query: 483 -NFAGCAVII-SHD 494 N G +II +HD Sbjct: 180 LNDEGKTIIIVTHD 193 >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 Score = 97.9 bits (244), Expect = 5e-21 Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 19/199 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 I ++K Y + +D +SF+ G IVG +GPNGAGK+T +++TG PDSG++ V Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62 Query: 377 GETVCLSYVDQSR--------DSLEAEKTVWEDISGGDDIVKLNGHEINSR-AYCSAFNF 427 GE V + + R + L + V E + I + G + R Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG 122 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGC 487 +Q ++IG LS G R RV LA+ L V++LDEPT LD L + + ++N Sbjct: 123 LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKD 182 Query: 488 AVIISHDRMFLDRLATHIL 506 II L+THI+ Sbjct: 183 KTII---------LSTHIM 192 Score = 73.7 bits (181), Expect = 1e-13 Identities = 57/231 (24%), Positives = 100/231 (43%), Gaps = 41/231 (17%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG---------- 61 L+K++G++ LD+++ +G LGPNGAGKST ++I+ G +G Sbjct: 8 LTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVL 67 Query: 62 EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 + +GYLP+ L L V+E + Q I Y ++ EE I Sbjct: 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYL-------QFIAGIYGMKGQLLKQRVEEMIEL 120 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 + GL P I LS G ++RV L + L+ P +L+LD Sbjct: 121 V-------GL---------------RPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 Query: 182 EPTNHLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNWILEVDRGK 230 EPT LD + + ++ +++ TH ++ + + ++ +++GK Sbjct: 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGK 209 >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein. Length = 237 Score = 96.8 bits (241), Expect = 1e-20 Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 42/235 (17%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65 +A +SK FGS + LDD+NL + + +LGP+G+GKST+LRI+AG+++ +G L Sbjct: 3 IANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ 62 Query: 66 -ATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 AT +G++ Q L TV++NI G+ E+ + K + + Sbjct: 63 DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGL-----------EIRKHPKAKIKARV 111 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 +L +++ +GL D P LSGG+++RVAL + L P +LL Sbjct: 112 EELLELVQLEGLGD------------RYPN------QLSGGQRQRVALARALAVEPQVLL 153 Query: 180 LDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 LDEP LDA E +W+ K E + VTHD+ V + I+ + GK Sbjct: 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGK 208 Score = 84.9 bits (210), Expect = 5e-17 Identities = 67/219 (30%), Positives = 102/219 (46%), Gaps = 30/219 (13%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE ISK + +D+++ ++P G +V ++GP+G+GK+TL R++ G E PDSG I + Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60 Query: 378 ETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSRA--Y 421 D +R K TV ++I+ G +I K +I +R Sbjct: 61 GQ------DATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEEL 114 Query: 422 CSAFNFKG-GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480 +G GD+ LSGGQR RV LA+ L V+LLDEP LD + L Sbjct: 115 LELVQLEGLGDRYP--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172 Query: 481 L----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 L + V ++HD+ +A I+ NG +E Sbjct: 173 LRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMS-NGKIE 210 >gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. Length = 694 Score = 96.5 bits (241), Expect = 1e-20 Identities = 64/229 (27%), Positives = 113/229 (49%), Gaps = 45/229 (19%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF-------- 69 LD+++L+ P K+ I+G G+GKST+L+++ G+ + G + L G Sbjct: 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQIDPA 535 Query: 70 ----TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 +GY+PQ+P+L T+++NI G + D E ++ +E +A + + Sbjct: 536 DLRRNIGYVPQDPRL-FYGTLRDNIALGAPY---ADD---EEILRAAE-----LAGVTEF 583 Query: 126 IDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 + GL ++Q+ G SLSGG+++ VAL + LL P +LLLDEP Sbjct: 584 VRRHPDGL-----DMQIG-------ERGR---SLSGGQRQAVALARALLRDPPILLLDEP 628 Query: 184 TNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230 T+ +D + + L+ + +++VTH LD V I+ +D G+ Sbjct: 629 TSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDR-IIVMDNGR 676 Score = 87.6 bits (218), Expect = 7e-18 Identities = 71/278 (25%), Positives = 118/278 (42%), Gaps = 65/278 (23%) Query: 276 ARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSY--NDRLLI 333 R ++K ++S +EL++ R G + + G IE + +S +Y + + Sbjct: 426 TRYQQAKTALQSLDELMQLPVERPEG--TRFLHRPRLQGE--IEFRNVSFAYPGQETPAL 481 Query: 334 DNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-----------------HV 376 DN+S + PG V +IG G+GK+TL ++L G P G++ ++ Sbjct: 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNI 541 Query: 377 GETVCLSYVDQS--------RDSLEAEKTVWED--------ISGGDDIVKLNGHEINSRA 420 G YV Q RD++ +D ++G + V H Sbjct: 542 G------YVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFV--RRHP----- 588 Query: 421 YCSAFNFKGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478 G D Q +R SLSGGQR V LA+ L ++LLDEPT+ +D + + Sbjct: 589 -------DGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFK 641 Query: 479 DALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHV 514 D L+ + V+++H R L L I+ + NG + Sbjct: 642 DRLKRWLAGKTLVLVTH-RTSLLDLVDRIIVMD-NGRI 677 >gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional. Length = 340 Score = 94.9 bits (236), Expect = 4e-20 Identities = 61/188 (32%), Positives = 98/188 (52%), Gaps = 20/188 (10%) Query: 298 RHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357 +H G ++ + + V I+ G+SKSY D+ +++ LSF + G G++GPNGAGK+ Sbjct: 22 KHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKS 81 Query: 358 TLFRMLTGDESPDSGTIHV-GETVCLSYVDQSR------------DSLEAEKTVWEDISG 404 T+ RM+ G SPD+G I V G V ++R D+L+ E TV E++ Sbjct: 82 TIARMILGMTSPDAGKITVLGVPV----PARARLARARIGVVPQFDNLDLEFTVRENLLV 137 Query: 405 GDDIVKLNGHEINSRAYCSAFNFKGGDQQQ--RIGSLSGGQRGRVHLAKILKSGGNVILL 462 ++ EI + S F + + R+ LSGG + R+ LA+ L + +++L Sbjct: 138 FGRYFGMSTREIEA-VIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLIL 196 Query: 463 DEPTNDLD 470 DEPT LD Sbjct: 197 DEPTTGLD 204 Score = 85.3 bits (211), Expect = 4e-17 Identities = 68/217 (31%), Positives = 104/217 (47%), Gaps = 44/217 (20%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------ 62 +AG+SK +G K V++ ++ + G+LGPNGAGKSTI R++ G+ G+ Sbjct: 44 LAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103 Query: 63 -----AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 A LA +G +PQ LDL TV+EN++ + RY M+ + + E Sbjct: 104 PVPARARLARA-RIGVVPQFDNLDLEFTVRENLL--------VFGRY--FGMS-TREIEA 151 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 I L + LE++ ++ LSGG KRR+ L + L++ P L Sbjct: 152 VIPSLLEFA------RLESKADA------------RVSDLSGGMKRRLTLARALINDPQL 193 Query: 178 LLLDEPTNHLD--AETIAWME-KYLREYSGAVLMVTH 211 L+LDEPT LD A + W + L +L+ TH Sbjct: 194 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230 >gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional. Length = 306 Score = 93.7 bits (233), Expect = 1e-19 Identities = 57/166 (34%), Positives = 88/166 (53%), Gaps = 14/166 (8%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 I+ + + K Y D+L++D LSF + G G++GPNGAGKTT RML G PD+G+I + Sbjct: 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 Query: 377 -GETVCLSYVDQSR---------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426 GE V S +R D+L+ + TV E++ L+ + Sbjct: 67 CGEPVP-SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALV-PPLLE 124 Query: 427 FKGGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 F + + ++G LSGG + R+ LA+ L + +V++LDEPT LD Sbjct: 125 FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170 Score = 84.1 bits (208), Expect = 9e-17 Identities = 64/223 (28%), Positives = 95/223 (42%), Gaps = 50/223 (22%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI---------- 55 + K +G K V+D ++ G+LGPNGAGK+T LR++ G+ Sbjct: 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66 Query: 56 -DKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 + A A VG +PQ LD TV+EN++ + RY L + Sbjct: 67 CGEPVPSRARHAR-QRVGVVPQFDNLDPDFTVRENLL--------VFGRYFGLSAAAARA 117 Query: 115 ---TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 E AKL++ D+K + LSGG KRR+ L + L Sbjct: 118 LVPPLLEFAKLENKADAK------------------------VGELSGGMKRRLTLARAL 153 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTH 211 ++ PD+L+LDEPT LD + M + LR +L+ TH Sbjct: 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196 >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 Score = 93.1 bits (232), Expect = 2e-19 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 61/250 (24%) Query: 8 HMAGLSKVFGS----KKVLDDINLSFYPDAKIGIL-GPNGAGKSTILRIMAGI------- 55 + L+ +G K+VL DINL P +I IL GP+G+GK+T+L ++ G+ Sbjct: 3 SIRNLNHYYGHGSLRKQVLFDINLEINP-GEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61 Query: 56 ----DKEYNGEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY 104 +E G A+ +GY+ Q L T ++N+ + Sbjct: 62 LKVLGQELYG----ASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL---------- 107 Query: 105 NELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164 EL N S + E + + ++++ GL D L L SGG+K+R Sbjct: 108 -ELQPNLSYQ--EARERARAMLEAVGLGD----------HLDYYPHNL-----SGGQKQR 149 Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDRYFLDNVT 220 VA+ + L+ P L+L DEPT LD+++ + M+K RE +L+VTHD LD V Sbjct: 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VA 208 Query: 221 NWILEVDRGK 230 + I+ ++ GK Sbjct: 209 DRIVHMEDGK 218 Score = 63.9 bits (156), Expect = 1e-10 Identities = 58/219 (26%), Positives = 102/219 (46%), Gaps = 30/219 (13%) Query: 317 VIEAKGISKSY----NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 VI + ++ Y + ++ +++ ++ PG IV + GP+G+GKTTL ++ G S G Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG 60 Query: 373 TIHV-GETVC-------------LSYVDQSR---DSLEAEKTVWEDISGGDDIVKLNGHE 415 ++ V G+ + + Y+ Q+ L A + V + L+ E Sbjct: 61 SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNV---QMALELQPNLSYQE 117 Query: 416 INSRAYCSAFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 RA GD +LSGGQ+ RV +A+ L ++L DEPT LD+++ Sbjct: 118 ARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 Query: 475 SALEDALENFA---GCAV-IISHDRMFLDRLATHILAFE 509 + + ++ A GC + I++HD LD +A I+ E Sbjct: 178 RDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHME 215 >gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed. Length = 402 Score = 91.8 bits (228), Expect = 4e-19 Identities = 55/174 (31%), Positives = 85/174 (48%), Gaps = 27/174 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 I+ +S + D ++D + + G +VG++GPNGAGKTTL R + G +P +GT+ V Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63 Query: 377 GETVCLSYVDQSRDSLEAEK---TVWEDIS-----GGDDIVKLNGH----------EINS 418 G+ V ++ + A + +V +D S +V++ E + Sbjct: 64 GDDV------EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR 117 Query: 419 RAYCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 A A G Q + + SLSGG+R RV LA+ L V+LLDEPT LD Sbjct: 118 AAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171 Score = 72.2 bits (177), Expect = 4e-13 Identities = 54/192 (28%), Positives = 82/192 (42%), Gaps = 38/192 (19%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-- 66 ++ LS FG VLD ++LS + +G++GPNGAGK+T+LR + G G +A Sbjct: 6 VSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGD 65 Query: 67 ---------TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 V +PQ+ L V++ + G ++ D + E Sbjct: 66 DVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTE----------- 114 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPA-DGLNITSLSGGEKRRVALCKLLLSSPD 176 V+ A+E +TSLSGGE++RV L + L + Sbjct: 115 ---------------TDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 Query: 177 LLLLDEPTNHLD 188 +LLLDEPT LD Sbjct: 160 VLLLDEPTASLD 171 >gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional. Length = 207 Score = 90.3 bits (225), Expect = 1e-18 Identities = 59/198 (29%), Positives = 92/198 (46%), Gaps = 22/198 (11%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E + ++ R+L LSF L G + + GPNG+GKTTL R++ G P +GTI + Sbjct: 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 Query: 377 -GETVCLSYVDQS------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 G + V ++ R++++ TV E++ L G E++ A A Sbjct: 62 DGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAF--LGGEELDIAAALEAVGL-A 118 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGC 487 G LS GQ+ RV LA++L S + +LDEPT LD ++ + + G Sbjct: 119 PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGG 178 Query: 488 AVIISHDRMFLDRLATHI 505 VI ATHI Sbjct: 179 IVIA----------ATHI 186 Score = 71.4 bits (176), Expect = 5e-13 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 42/197 (21%) Query: 26 NLSFY--PDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83 LSF + + GPNG+GK+T+LR++AG+ T+ + Sbjct: 20 GLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--------PAAGTIKLDGGDIDDPDV 71 Query: 84 KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIE 143 + H+ A+ L + E + + + E ++ A+E Sbjct: 72 AEA----CHYLGHRNAMKP---ALTV------AENLEFWAAFLGGE-----ELDIAAALE 113 Query: 144 S------LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197 + H P LS G+KRRVAL +LL+S+ + +LDEPT LDA +A + Sbjct: 114 AVGLAPLAHLPFG-----YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168 Query: 198 YLREYS---GAVLMVTH 211 +R + G V+ TH Sbjct: 169 LIRAHLAQGGIVIAATH 185 >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed. Length = 251 Score = 90.2 bits (224), Expect = 1e-18 Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 42/203 (20%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75 FG ++VL D++L P + +LGPNGAGKST++R++ G+ G +GY+P Sbjct: 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVP 73 Query: 76 QEPQLD--LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD 133 Q+ LD L TV R+ L K +DI+ + Sbjct: 74 QKLYLDTTLPLTVN---------------RFLRLRPG---------TKKEDILPA----- 104 Query: 134 LETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE-TI 192 L+ VQ + P + LSGGE +RV L + LL+ P LL+LDEPT +D + Sbjct: 105 LK-RVQAG-HLIDAP-----MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 Query: 193 A---WMEKYLREYSGAVLMVTHD 212 A +++ RE AVLMV+HD Sbjct: 158 ALYDLIDQLRRELDCAVLMVSHD 180 Score = 80.5 bits (199), Expect = 1e-15 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 33/194 (17%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ + +S S+ R ++ ++S +L PG I+ ++GPNGAGK+TL R++ G +PD G I Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKR 63 Query: 377 GETVCLSYVDQ------------SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 + + YV Q +R T EDI V+ GH I Sbjct: 64 NGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQA-GHLI-------- 114 Query: 425 FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED---AL 481 + LSGG+ RV LA+ L + +++LDEPT +D AL D L Sbjct: 115 --------DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166 Query: 482 ENFAGCAVI-ISHD 494 CAV+ +SHD Sbjct: 167 RRELDCAVLMVSHD 180 >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional. Length = 204 Score = 89.5 bits (223), Expect = 2e-18 Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 52/214 (24%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++EA+ ++ ++R+L LSF L G +V + GPNGAGKT+L R+L G PD+G + Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 Query: 377 -GETVCLSYVDQSRDS-------------LEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422 GE + + RD ++ E T E N R Y Sbjct: 61 QGEP-----IRRQRDEYHQDLLYLGHQPGIKTELTALE----------------NLRFYQ 99 Query: 423 SAFNFKGGDQQ----QRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 + ++G LS GQ+ RV LA++ + + +LDEP Sbjct: 100 RLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 Query: 469 LDTETLSALEDALENFA---GCAVIISHDRMFLD 499 +D + ++ LE L A G ++ +H + + Sbjct: 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 Score = 67.9 bits (167), Expect = 6e-12 Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 39/205 (19%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA-WLATGFTVGYLP 75 + + ++ + + I GPNGAGK+++LRI+AG+ + GE W G + Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ--GEPIRRQR 69 Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE----IAKLQDIIDSKGL 131 E DL + H+ I +E T E +L D + L Sbjct: 70 DEYHQDLLY---------LGHQPGI----------KTELTALENLRFYQRLHGPGDDEAL 110 Query: 132 WD-LETEVQVAIES-LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 W+ L QV + P LS G++RRVAL +L L+ L +LDEP +D Sbjct: 111 WEALA---QVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162 Query: 190 ETIAWMEKYLREYS---GAVLMVTH 211 + +A +E L +++ G V++ TH Sbjct: 163 QGVARLEALLAQHAEQGGMVILTTH 187 >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. Length = 303 Score = 89.2 bits (221), Expect = 2e-18 Identities = 59/166 (35%), Positives = 90/166 (54%), Gaps = 12/166 (7%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 V I+ G+SKSY D++++++LSF + G G++GPNGAGK+T+ RML G SPD G I Sbjct: 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKIT 62 Query: 376 VGETVCLSYVDQSR---------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426 V S +R D+L+ E TV E++ ++ EI + S Sbjct: 63 VLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEA-VIPSLLE 121 Query: 427 FKGGDQQQ--RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 F + + R+ LSGG + R+ LA+ L + +++LDEPT LD Sbjct: 122 FARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167 Score = 86.9 bits (215), Expect = 1e-17 Identities = 66/217 (30%), Positives = 101/217 (46%), Gaps = 44/217 (20%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG-----------IDK 57 + G+SK +G K V++D++ + G+LGPNGAGKSTI R++ G + + Sbjct: 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66 Query: 58 EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 A LA +G +PQ LD TV+EN++ + RY + + + E Sbjct: 67 PVPSRARLARV-AIGVVPQFDNLDPEFTVRENLL--------VFGRYFGM---STREIEA 114 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 I L + LE++ V + LSGG KRR+ L + L++ P L Sbjct: 115 VIPSLLEFA------RLESKADV------------RVALLSGGMKRRLTLARALINDPQL 156 Query: 178 LLLDEPTNHLD--AETIAWME-KYLREYSGAVLMVTH 211 L+LDEPT LD A + W + L +L+ TH Sbjct: 157 LILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193 >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 Score = 88.7 bits (220), Expect = 4e-18 Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 36/220 (16%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + +S S RL++D + PPG + G++GPNG+GK+TL R+L G PD+GT+ + Sbjct: 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLA 61 Query: 378 ----------ETVC-LSYVDQS---------RDSLEAEKTVWEDISGGDDIVKLNGHEIN 417 ++ V+Q RD + + + GD + + Sbjct: 62 GVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGD---SPHDAAVV 118 Query: 418 SR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT---- 471 R A + D + +LSGG+R RVH+A+ L ++LLDEPTN LD Sbjct: 119 DRALARTELSHLADRD----MSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174 Query: 472 ETLSALEDALENFAGCAVIIS-HDRMFLDRLATHILAFEG 510 ETL+ + + G V+ + HD H++ +G Sbjct: 175 ETLALVRELAAT--GVTVVAALHDLNLAASYCDHVVVLDG 212 Score = 86.4 bits (214), Expect = 2e-17 Identities = 57/213 (26%), Positives = 103/213 (48%), Gaps = 29/213 (13%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68 ++ +S G + ++D ++++ P + G+LGPNG+GKST+LR++AG + G LA Sbjct: 4 LSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGV 63 Query: 69 FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDS 128 G LS+ + A + A++++ ++ + + + + + I Sbjct: 64 DLHG---------LSRRAR-------ARRVALVEQDSDTAVPLTVRDVVALGR----IPH 103 Query: 129 KGLWDLETEVQVAIESLHCPADGL------NITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 + LW ++ A+ L ++++LSGGE++RV + + L P LLLLDE Sbjct: 104 RSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDE 163 Query: 183 PTNHLDAETIAWMEKYLREYSG---AVLMVTHD 212 PTNHLD +RE + V+ HD Sbjct: 164 PTNHLDVRAQLETLALVRELAATGVTVVAALHD 196 >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. Length = 214 Score = 88.5 bits (220), Expect = 4e-18 Identities = 58/228 (25%), Positives = 98/228 (42%), Gaps = 50/228 (21%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP------ 75 L D++L + + GP+GAGK+T+L+++ G G+ +A G V L Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIA-GEDVNRLRGRQLPL 76 Query: 76 ---------QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK-LQDI 125 Q+ +L +TV EN+ L + K E EI + + Sbjct: 77 LRRRIGVVFQDFRLLPDRTVYENV---------------ALPLEVRGKKEREIQRRVGAA 121 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 + GL + LSGGE++RVA+ + +++SP LLL DEPT Sbjct: 122 LRQVGLEH----------KADAFPE-----QLSGGEQQRVAIARAIVNSPPLLLADEPTG 166 Query: 186 HLDAETIAWMEKYLRE---YSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 +LD + + L+ V++ THD +D V + ++ +D G+ Sbjct: 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 Score = 77.3 bits (191), Expect = 1e-14 Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 34/216 (15%) Query: 317 VIEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IE +SK+Y + ++S + G + + GP+GAGKTTL ++L G +P G + Sbjct: 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60 Query: 376 VG----ETVCLSYVDQSRDS---------LEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422 + + + R L ++TV+E+++ ++ EI R Sbjct: 61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGA 120 Query: 423 S---------AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 + A F LSGG++ RV +A+ + + ++L DEPT +LD + Sbjct: 121 ALRQVGLEHKADAFP--------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDL 172 Query: 474 LSALEDALE--NFAGCAVII-SHDRMFLDRLATHIL 506 + D L+ N G VI+ +HD +DR+A ++ Sbjct: 173 SERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVI 208 >gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 258 Score = 87.5 bits (218), Expect = 7e-18 Identities = 69/228 (30%), Positives = 96/228 (42%), Gaps = 60/228 (26%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------- 62 LS G + +LDD++L+ P + ILGPNGAGKST+LR ++G +GE Sbjct: 7 NLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPL 66 Query: 63 -AW----LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 W LA LPQ L TV+E + G + + E+ Sbjct: 67 ADWSPAELAR--RRAVLPQHSSLSFPFTVEEVVAMG-------------RAPHGLSRAED 111 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL--LSSP 175 + + + L L G + LSGGE++RV L ++L L P Sbjct: 112 DAL-VAAALAQVDLAHLA---------------GRDYPQLSGGEQQRVQLARVLAQLWEP 155 Query: 176 D----LLLLDEPTNHLDAETIAWMEKYLR-------EYSGAVLMVTHD 212 D LLLDEPT+ LD +A LR E AV++V HD Sbjct: 156 DGPPRWLLLDEPTSALD---LAHQHHVLRLARQLAHERGLAVIVVLHD 200 Score = 83.7 bits (208), Expect = 1e-16 Identities = 28/62 (45%), Positives = 43/62 (69%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++EA+ +S R L+D++S L PG +V ++GPNGAGK+TL R L+G+ SPDSG + Sbjct: 1 AMLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60 Query: 376 VG 377 + Sbjct: 61 LN 62 Score = 44.8 bits (107), Expect = 6e-05 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 22/83 (26%) Query: 438 SLSGGQRGRVHLAKIL------KSGGNVILLDEPTNDLDT----ETLSALEDALENFA-- 485 LSGG++ RV LA++L +LLDEPT+ LD L A Sbjct: 134 QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVL----RLARQLAHE 189 Query: 486 -GCAVI-ISHD----RMFLDRLA 502 G AVI + HD + DR+ Sbjct: 190 RGLAVIVVLHDLNLAARYADRIV 212 >gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. Length = 198 Score = 87.4 bits (217), Expect = 9e-18 Identities = 56/202 (27%), Positives = 79/202 (39%), Gaps = 43/202 (21%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + A+ ++ S +R+L + LSF L G + V GPNG GKTTL R+L G PDSG + Sbjct: 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60 Query: 378 ET----VCLSYVDQS-----RDSLEAEKTVWE------DISGGDDI--------VKLNGH 414 T L+ E + E I GG V L G Sbjct: 61 GTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF 120 Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 E LS GQ+ R+ LA++ S + +LDEPT LD + Sbjct: 121 E-----------------DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163 Query: 475 SALEDALENFA---GCAVIISH 493 + L L G ++ +H Sbjct: 164 ALLAGLLRAHLARGGIVLLTTH 185 Score = 73.9 bits (182), Expect = 1e-13 Identities = 60/202 (29%), Positives = 84/202 (41%), Gaps = 48/202 (23%) Query: 25 INLSFYPDA--KIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGFTVG--------- 72 LSF +A + + GPNG GK+T+LRI+AG+ + +GE W T Sbjct: 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNIL 76 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 YL P L + EN L + + E+ +A + GL Sbjct: 77 YLGHLPGLKPELSALEN-----------LHFWAAIHGGAQRTIEDALAAV-------GLT 118 Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192 E PA LS G++RR+AL +L LS L +LDEPT LD + Sbjct: 119 GFE----------DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGV 163 Query: 193 AWMEKYLREY---SGAVLMVTH 211 A + LR + G VL+ TH Sbjct: 164 ALLAGLLRAHLARGGIVLLTTH 185 >gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 574 Score = 86.8 bits (216), Expect = 1e-17 Identities = 72/249 (28%), Positives = 105/249 (42%), Gaps = 61/249 (24%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTIL------------RIM-AGID-KEYNGEAWL 65 VL ++L K+ +LG G GKST+L I+ G +Y+ EA L Sbjct: 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYS-EAAL 412 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE-IAKLQD 124 +V + Q L S T+++N L++ ++E I LQ Sbjct: 413 RQAISV--VSQRVHL-FSATLRDN-----------------LLLAAPNASDEALIEVLQ- 451 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNI------TSLSGGEKRRVALCKLLLSSPDLL 178 QV +E L GLN LSGGE+RR+ + + LL LL Sbjct: 452 --------------QVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 Query: 179 LLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236 LLDEPT LDAET + + L E++ VLM+TH L+ + +D G+ I QG Sbjct: 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICV-MDNGQIIE-QG 555 Query: 237 NYSAYLQMK 245 + L + Sbjct: 556 THQELLAQQ 564 Score = 46.7 bits (112), Expect = 1e-05 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%) Query: 310 GKRLGHVVIEAKGISKSYNDR--LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367 V + +S +Y D+ ++ LS ++ G V ++G G GK+TL ++LT Sbjct: 331 TAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW 390 Query: 368 SPDSGTI 374 P G I Sbjct: 391 DPQQGEI 397 Score = 42.1 bits (100), Expect = 4e-04 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 14/70 (20%) Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENF 484 GG Q LSGG++ R+ +A+ L ++LLDEPT LD ET L L E+ Sbjct: 472 GGRQ------LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELL---AEHA 522 Query: 485 AGCAVI-ISH 493 V+ I+H Sbjct: 523 QNKTVLMITH 532 >gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. Length = 353 Score = 86.2 bits (214), Expect = 2e-17 Identities = 65/217 (29%), Positives = 100/217 (46%), Gaps = 46/217 (21%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65 + K FG+ L DI+LS + +LGP+G GK+T+LRI+AG++++ G + Sbjct: 9 NIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDI 68 Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 + G + Q L + TV +NI G+ N M E Sbjct: 69 TRLPPQKRDY--GIVFQSYALFPNLTVADNIAYGL---------KNRGM-----GRAEVA 112 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 ++ +++D GL E + P LSGG+++RVAL + L +SP LLL Sbjct: 113 ERVAELLDLVGLPGSERKY---------PG------QLSGGQQQRVALARALATSPGLLL 157 Query: 180 LDEPTNHLDA---ETIAW-MEKYLREYSGAVLMVTHD 212 LDEP + LDA E + + + R +MVTHD Sbjct: 158 LDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHD 194 Score = 71.6 bits (176), Expect = 5e-13 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + I K + + ++S + G V ++GP+G GKTTL R++ G E +GTI+ G Sbjct: 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQG 64 Query: 378 ETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 Q RD +L TV ++I+ G + E+ R + G Sbjct: 65 GRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVA-ELLDLVG 123 Query: 430 GDQQQRI--GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 +R G LSGGQ+ RV LA+ L + ++LLDEP + LD Sbjct: 124 LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALD 166 >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional. Length = 353 Score = 85.9 bits (213), Expect = 2e-17 Identities = 70/218 (32%), Positives = 102/218 (46%), Gaps = 38/218 (17%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL--- 65 +A + K FG +VL+DI+L + +LGP+G+GK+T+LRI+AG++ + +G Sbjct: 5 IANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGT 64 Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 A VG++ Q L TV +NI G+ +L R Sbjct: 65 DVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGL----TVLPRRERPNA---------- 110 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 I +K LE VQ+A + PA LSGG+K+RVAL + L P +LL Sbjct: 111 ----AAIKAKVTQLLEM-VQLAHLADRYPA------QLSGGQKQRVALARALAVEPQILL 159 Query: 180 LDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHDR 213 LDEP LDA E W+ + E + VTHD+ Sbjct: 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ 197 Score = 74.7 bits (184), Expect = 5e-14 Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 23/198 (11%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 IE I KS+ +++++S +P G +V ++GP+G+GKTTL R++ G E SG I Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62 Query: 377 GETVCLSYVDQSRD----------SLEAEKTVWEDISGGDDIV----KLNGHEINSRAYC 422 G V S + +RD +L TV+++I+ G ++ + N I ++ Sbjct: 63 GTDV--SRL-HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQ 119 Query: 423 SAFNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 + R + LSGGQ+ RV LA+ L ++LLDEP LD + L L Sbjct: 120 LLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWL 179 Query: 482 ----ENFAGCAVIISHDR 495 E +V ++HD+ Sbjct: 180 RQLHEELKFTSVFVTHDQ 197 >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. Length = 520 Score = 85.2 bits (211), Expect = 4e-17 Identities = 90/409 (22%), Positives = 164/409 (40%), Gaps = 115/409 (28%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 L+K F K+VL +I+ + +GILG +GAGKS ++ ++ G+D+ + + V Sbjct: 6 LTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII--YHV 63 Query: 72 GYLPQ----EPQ---------------------LDLSKTVKENIIEGVA----------H 96 + E +LS ++ I + +A Sbjct: 64 ALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG 123 Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS 156 +LD E + + +E + + D+I+ VQ++ H D Sbjct: 124 DDTVLDNVLEALEEIGYEGKEAVGRAVDLIE---------MVQLSHRITHIARD------ 168 Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 LSGGEK+RV L + L P L L DEPT LD +T + L E ++++ +H Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228 Query: 213 RYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVS 272 ++++++ + ++ G+ I +G ++ A M E E+ ++ +E Sbjct: 229 PEVIEDLSDKAIWLENGE-IKEEGTPD---EVVAVFM--EGVSEVEKECEVEVGEP---- 278 Query: 273 SPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYN--DR 330 +I+ + +SK Y DR Sbjct: 279 --------------------------------------------IIKVRNVSKRYISVDR 294 Query: 331 LLI---DNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ DN+S ++ G I G++G +GAGKTTL +++ G P SG ++V Sbjct: 295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNV 343 Score = 64.1 bits (156), Expect = 9e-11 Identities = 72/272 (26%), Positives = 114/272 (41%), Gaps = 62/272 (22%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES--PDSGTI- 374 IE K ++K ++ + ++ N+SF + G ++G++G +GAGK+ L +L G + P SG I Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60 Query: 375 -HVGETVCLSYVD-QSRD---------SLEAEKTVWEDISG------------------- 404 HV YV+ S+ +LE E+ + ++S Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120 Query: 405 --GDDIVKLN--------GHEINSRAYCSAFNFKGGDQQQRIG----SLSGGQRGRVHLA 450 GDD V N G+E + + RI LSGG++ RV LA Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180 Query: 451 KILKSGGNVILLDEPTNDLDTETL----SALEDALENFAGCAVIISHDRMFLDRLATHIL 506 + L + L DEPT LD +T +ALE+A++ V+ SH ++ L+ + Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240 Query: 507 AFEGNGH----------VEWFEGNFEEYEKDK 528 E NG V F E EK+ Sbjct: 241 WLE-NGEIKEEGTPDEVVAVFMEGVSEVEKEC 271 Score = 63.3 bits (154), Expect = 1e-10 Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 29/216 (13%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG-----FTV 71 G K +D+++L GI+G +GAGK+T+ +I+AG+ + +GE + G T Sbjct: 295 GVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT- 353 Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE----KTEEEIAKLQDIID 127 +P D K I G+ H++ L + ++ N +E + +E+A+++ +I Sbjct: 354 -----KPGPDGRGRAKRYI--GILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVIT 406 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 K + E + + ++ LS GE+ RVAL ++L+ P +++LDEPT + Sbjct: 407 LKMVGFDEEKAEEILDKYP--------DELSEGERHRVALAQVLIKEPRIVILDEPTGTM 458 Query: 188 DAETIAWMEKYL----REYSGAVLMVTHDRYFLDNV 219 D T + + E ++V+HD F+ +V Sbjct: 459 DPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDV 494 Score = 43.3 bits (102), Expect = 2e-04 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED----ALENFAGCAVIISHD 494 LS G+R RV LA++L +++LDEPT +D T + A E +I+SHD Sbjct: 428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHD 487 Query: 495 ----RMFLDRLA 502 DR A Sbjct: 488 MDFVLDVCDRAA 499 >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. Length = 302 Score = 84.7 bits (210), Expect = 5e-17 Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSY 384 K Y D +D ++FK+ G + G +GPNGAGKTT RMLT P SGT V + Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVRE 60 Query: 385 VDQSRDSLE---AEKTVWEDISGGDDIV------KLNGHEINSRAYCSAFNFKGGDQQQR 435 + R S+ +V ED++G +++ L E RA F+ G+ R Sbjct: 61 PRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADR 120 Query: 436 -IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVII- 491 +G+ SGG R R+ +A L +V+ LDEPT LD T A+ D + G +++ Sbjct: 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLT 180 Query: 492 SHDRMFLDRLATHI 505 +H D+L I Sbjct: 181 THYMEEADKLCDRI 194 Score = 83.6 bits (207), Expect = 1e-16 Identities = 66/233 (28%), Positives = 106/233 (45%), Gaps = 44/233 (18%) Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGY 73 KV+G K +D +N G LGPNGAGK+T +R++ + + +G A +A GY Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVA-----GY 55 Query: 74 -LPQEPQLDLSKTVKENIIEGVAHKQAILD-----RYNELMM----NYSEK-TEEEIAKL 122 + +EP + V+ +I G+ + A +D R N MM + EE +L Sbjct: 56 DVVREP-----RKVRRSI--GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEEL 108 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 ++ + L + AD + + SGG +RR+ + L+ PD+L LDE Sbjct: 109 LELFE---LGE--------------AADRP-VGTYSGGMRRRLDIAASLIHQPDVLFLDE 150 Query: 183 PTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGKGI 232 PT LD T + Y+R +L+ TH D + + I +D G+ I Sbjct: 151 PTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRII 203 >gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. Length = 247 Score = 83.5 bits (207), Expect = 1e-16 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 47/221 (21%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AGIDKE----YN 60 L+ +G K+ L +INL + ++GP+G GKST+LR + G+ E ++ Sbjct: 7 LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFD 66 Query: 61 GEAWLATGF-------TVGYLPQEPQLDLSKTVKENIIEGV-AHKQAILDRYNELMMNYS 112 G+ VG + Q+P ++ +NI G H I D+ Sbjct: 67 GQDIYDKKIDVVELRRRVGMVFQKPNP-FPMSIYDNIAYGPRLHG--IKDK--------- 114 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 K +EI ++ + LWD EV+ + LH A LSGG+++R+ + + L Sbjct: 115 -KELDEIV--EESLKKAALWD---EVK---DRLHDSA-----LGLSGGQQQRLCIARALA 160 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211 P++LLLDEPT+ LD +E+ ++E +++VTH Sbjct: 161 VEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 Score = 69.2 bits (170), Expect = 3e-12 Identities = 63/264 (23%), Positives = 111/264 (42%), Gaps = 61/264 (23%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDS 371 IE + ++ Y ++ + N++ +P + +IGP+G GK+TL R L Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60 Query: 372 GTIHV-GETVCLSYVDQSRDSLEAE--------------KTVWEDISGG----------- 405 G + G+ + D+ D +E +++++I+ G Sbjct: 61 GKVLFDGQDI----YDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKE 116 Query: 406 -DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458 D+IV+ L E+ R + SA LSGGQ+ R+ +A+ L Sbjct: 117 LDEIVEESLKKAALWDEVKDRLHDSAL------------GLSGGQQQRLCIARALAVEPE 164 Query: 459 VILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGH-VE 515 V+LLDEPT+ LD +E+ ++ VI++H+ R++ AF +G VE Sbjct: 165 VLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT-AFFYDGELVE 223 Query: 516 WFEGNFEE-YEKDKLSRSSRVLSG 538 G E+ + K R+ +SG Sbjct: 224 --YGPTEQIFTNPKEKRTEDYISG 245 >gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. Length = 236 Score = 83.5 bits (207), Expect = 1e-16 Identities = 62/222 (27%), Positives = 103/222 (46%), Gaps = 55/222 (24%) Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69 AGLS +G+++ LDD++ + P + +LGPNGAGKST+ ++ + G+ +A G Sbjct: 5 AGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA-GH 63 Query: 70 T-----------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSE 113 +G + Q+P LDL +V++N+ + G++ +A E Sbjct: 64 DLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEA------------RE 111 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173 + +A+L GL + + L+GG +RRV + + LL Sbjct: 112 RIAALLARL-------GLAE---------------RADDKVRELNGGHRRRVEIARALLH 149 Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTH 211 P LLLLDEPT LD + A + ++R + +VL TH Sbjct: 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATH 191 Score = 78.5 bits (194), Expect = 4e-15 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 16/173 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E G+S +Y R +D++SF + PG V ++GPNGAGK+TLF +LT G I V Sbjct: 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61 Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDIS-GGDDIVKLNG------HEINSRAYCSAFNFKGG 430 R +L V++ + D V+ N H ++ Sbjct: 62 G---HDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLA 118 Query: 431 DQQ------QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 ++ L+GG R RV +A+ L ++LLDEPT LD + +A+ Sbjct: 119 RLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional. Length = 250 Score = 83.3 bits (206), Expect = 1e-16 Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 37/228 (16%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE K + K ++ + ++ + ++ PG +V +IGP+G+GKTTL R + E P++GTI VG Sbjct: 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63 Query: 378 ETVCLSYVDQSRDSLEAEK-----------------------TVWEDISGGDDIVKLNGH 414 + +D +R SL +K TV E+I G IVK Sbjct: 64 DIT----IDTAR-SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPK 118 Query: 415 E---INSRAYCSAFNFKGG-DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 E +R + G R LSGGQ+ RV +A+ L VIL DEPT+ LD Sbjct: 119 EEATARARELLAKVGLAGKETSYPR--RLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176 Query: 471 TETLSALEDALENFAG---CAVIISHDRMFLDRLATHILAFEGNGHVE 515 E + + + + A VI++H+ F +A + + VE Sbjct: 177 PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224 Score = 72.9 bits (179), Expect = 2e-13 Identities = 73/273 (26%), Positives = 120/273 (43%), Gaps = 61/273 (22%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-----------------IMA 53 L K F + VL I+L P + I+GP+G+GK+T+LR I Sbjct: 8 NLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITI 67 Query: 54 GIDKEYNGEAWLATGFT--VGYLPQEPQLDLSKTVKENIIEG-VAHKQAILDRYNELMMN 110 + + + L VG++ Q L +TV ENIIEG V K Sbjct: 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG------------ 115 Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 E EE A+ ++++ GL ET LSGG+++RVA+ + Sbjct: 116 --EPKEEATARARELLAKVGLAGKETSYP---------------RRLSGGQQQRVAIARA 158 Query: 171 LLSSPDLLLLDEPTNHLDAETIAWMEKYLR---EYSGAVLMVTHDRYFLDNVTNWILEVD 227 L P+++L DEPT+ LD E + + +R + +++VTH+ F +V + + +D Sbjct: 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD 218 Query: 228 RGKGIPYQGNYSAYLQMKAKRMAQENREEISRQ 260 +G+ I QG AK + + ++ +RQ Sbjct: 219 QGR-IVEQG--------PAKALFADPQQPRTRQ 242 >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional. Length = 257 Score = 82.4 bits (204), Expect = 3e-16 Identities = 64/214 (29%), Positives = 98/214 (45%), Gaps = 49/214 (22%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 +SK +G + VL+ ++L + ++G +G GKST+LR++AG++ GE L G Sbjct: 17 AVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGE--LLAGTA 74 Query: 71 --------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122 + Q+ +L K V +N+ G L + + + +A + Sbjct: 75 PLAEAREDTRLMFQDARLLPWKKVIDNVGLG-------------LKGQWRDAALQALAAV 121 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 GL D E PA +LSGG+K+RVAL + L+ P LLLLDE Sbjct: 122 -------GLADRANE---------WPA------ALSGGQKQRVALARALIHRPGLLLLDE 159 Query: 183 PTNHLDAETIAWM----EKYLREYSGAVLMVTHD 212 P LDA T M E +++ VL+VTHD Sbjct: 160 PLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193 Score = 64.7 bits (158), Expect = 6e-11 Identities = 52/180 (28%), Positives = 82/180 (45%), Gaps = 34/180 (18%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV 380 +SK Y +R +++ L +P G V V+G +G GK+TL R+L G E+P +G + G Sbjct: 16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAP 75 Query: 381 CLSYVDQSR----DS-LEAEKTVWEDISGGDDIVKLNGH------------EINSRAYCS 423 + +R D+ L K V +++ G L G + RA Sbjct: 76 LAEAREDTRLMFQDARLLPWKKVIDNVGLG-----LKGQWRDAALQALAAVGLADRA--- 127 Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 + +LSGGQ+ RV LA+ L ++LLDEP LD T ++D +E+ Sbjct: 128 ---------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIES 178 >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. Length = 190 Score = 82.5 bits (204), Expect = 3e-16 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 27/184 (14%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392 + L+F G ++ ++G NGAGK+TL L G P SG + + +D SR L Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEP----LDYSRKGL 63 Query: 393 EAEK-----------------TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG--GDQQ 433 + V +D++ G + L+ E+ R A G G ++ Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVR-EALTAVGASGLRE 122 Query: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVII 491 + LSGG++ RV +A + +V+LLDEPT LD + L G V+I Sbjct: 123 RPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVI 182 Query: 492 S-HD 494 S HD Sbjct: 183 STHD 186 Score = 74.8 bits (184), Expect = 5e-14 Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 48/214 (22%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE--------AWLATG 68 G +VL +N + + +LG NGAGKST+L + G+ + +G + G Sbjct: 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKG 62 Query: 69 FT-----VGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK 121 VG + Q+P QL + V +++ G +N E + Sbjct: 63 LLERRQRVGLVFQDPDDQL-FAADVDQDVAFG--------------PLNLGLSEAEVERR 107 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 +++ + + G L HC LSGGEK+RVA+ + PD+LLLD Sbjct: 108 VREALTAVGASGLRER------PTHC---------LSGGEKKRVAIAGAVAMRPDVLLLD 152 Query: 182 EPTNHLD---AETIAWMEKYLREYSGAVLMVTHD 212 EPT LD E + + + LR V++ THD Sbjct: 153 EPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186 >gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif. Length = 686 Score = 82.3 bits (204), Expect = 3e-16 Identities = 64/238 (26%), Positives = 115/238 (48%), Gaps = 51/238 (21%) Query: 318 IEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 IE ++ Y L++D++S ++ PG V ++GP+G+GK+TL R+L G E+P+SG++ Sbjct: 452 IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF 511 Query: 376 VGETVCLSYVDQSR----------DSLEAEKTVWEDISGG-----DD---IVKLNGHEIN 417 + L+ +D + +++E+I+GG D+ ++ G + Sbjct: 512 Y-DGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAED 570 Query: 418 SRA-------YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 RA S GG G+LSGGQR R+ +A+ L ++L DE T+ LD Sbjct: 571 IRAMPMGMHTVISE----GG------GTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620 Query: 471 TETLSALEDALENFAGCAVIISHDRMFLDRLAT-----HILAFEGNGHVEWFEGNFEE 523 T + + ++LE ++I+H RL+T I + V+ +G ++E Sbjct: 621 NRTQAIVSESLERLKVTRIVIAH------RLSTIRNADRIYVLDAGRVVQ--QGTYDE 670 Score = 43.4 bits (103), Expect = 2e-04 Identities = 16/37 (43%), Positives = 27/37 (72%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK 57 +LDD++L P + I+GP+G+GKST+LR++ G + Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 Score = 37.2 bits (87), Expect = 0.010 Identities = 16/39 (41%), Positives = 26/39 (66%) Query: 155 TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIA 193 +LSGG+++R+ + + L+ P +LL DE T+ LD T A Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625 >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 275 Score = 82.0 bits (203), Expect = 3e-16 Identities = 64/207 (30%), Positives = 94/207 (45%), Gaps = 40/207 (19%) Query: 317 VIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++E + + SY D + ++FK G +V ++GPNGAGK+TLF G P SG + Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60 Query: 376 V-GETVCLSY--------------VDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420 + GE + Y V Q+ D TV ED++ G + L+ E+ R Sbjct: 61 IKGEP--IKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRV 118 Query: 421 YCSAFNFKGGDQQQRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + + +G LSGGQ+ RV +A IL +I+LDEPT+ LD Sbjct: 119 K---------EALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169 Query: 471 TETLSALEDALE--NFAGCAVIIS-HD 494 S + L N G +IIS HD Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHD 196 Score = 60.9 bits (148), Expect = 7e-10 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 48/210 (22%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKST-------ILRIMAG---IDKE---YNGEAWLAT 67 L IN + +LGPNGAGKST IL+ +G I E Y+ ++ L Sbjct: 17 ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV 76 Query: 68 GFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 TVG + Q P QL + TV+E++ G +N EE ++++ Sbjct: 77 RKTVGIVFQNPDDQL-FAPTVEEDVAFGP--------------LNLGLSKEEVEKRVKEA 121 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 + + G+ E + H LSGG+K+RVA+ +L P++++LDEPT+ Sbjct: 122 LKAVGMEGFENKPP------H---------HLSGGQKKRVAIAGILAMKPEIIVLDEPTS 166 Query: 186 HLD---AETIAWMEKYLREYSGAVLMVTHD 212 LD A I + L + +++ THD Sbjct: 167 GLDPMGASQIMKLLYDLNKEGITIIISTHD 196 >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional. Length = 377 Score = 82.2 bits (203), Expect = 3e-16 Identities = 64/198 (32%), Positives = 98/198 (49%), Gaps = 25/198 (12%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E + ++KS++ + +D++S + G I ++G +G GK+TL RML G E P +G I + Sbjct: 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-M 77 Query: 377 GETVCLSYVD----------QSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR-----AY 421 + V LS+V QS +L TV ++I+ G KL EI SR Sbjct: 78 LDGVDLSHVPPYQRPINMMFQSY-ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGL 136 Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE--- 478 F Q LSGGQR RV LA+ L ++LLDEP LD + ++ Sbjct: 137 VHMQEFAKRKPHQ----LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 Query: 479 -DALENFAGCAVIISHDR 495 D LE V+++HD+ Sbjct: 193 VDILERVGVTCVMVTHDQ 210 Score = 75.3 bits (185), Expect = 3e-14 Identities = 67/237 (28%), Positives = 103/237 (43%), Gaps = 52/237 (21%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 L+K F + +DD++L+ Y +LG +G GKST+LR++AG ++ G+ L G + Sbjct: 25 LTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML-DGVDL 83 Query: 72 GYLP----------QEPQLDLSKTVKENIIEGVAH----KQAILDRYNELMMNYSEKTEE 117 ++P Q L TV++NI G+ K I R NE++ Sbjct: 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEML--------- 134 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 + +Q+ K H LSGG+++RVAL + L P L Sbjct: 135 GLVHMQEFAKRKP---------------H---------QLSGGQRQRVALARSLAKRPKL 170 Query: 178 LLLDEPTNHLDAETIAWME----KYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 LLLDEP LD + M+ L +MVTHD+ + I ++RGK Sbjct: 171 LLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGK 227 >gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 544 Score = 81.2 bits (201), Expect = 7e-16 Identities = 60/220 (27%), Positives = 95/220 (43%), Gaps = 61/220 (27%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------------------DKE 58 G K L I+ + I+GP+G+GKST+ R++ GI D+E Sbjct: 329 GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 Query: 59 YNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE- 117 G+ +GYLPQ+ +L TV ENI A + EK E Sbjct: 389 TFGK-------HIGYLPQDVEL-FPGTVAENI--------ARFGENAD-----PEKIIEA 427 Query: 118 -EIAKLQDIIDS--KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 ++A + ++I G +T + +LSGG+++R+AL + L Sbjct: 428 AKLAGVHELILRLPDG---YDTVIGPGGA------------TLSGGQRQRIALARALYGD 472 Query: 175 PDLLLLDEPTNHLDAE-TIAWME--KYLREYSGAVLMVTH 211 P L++LDEP ++LD E A K L+ V+++TH Sbjct: 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH 512 Score = 78.2 bits (193), Expect = 5e-15 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 40/209 (19%) Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 GH+ +E I + + +SF+L G + +IGP+G+GK+TL R++ G P SG+ Sbjct: 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374 Query: 374 IHV-------------GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIV---------KL 411 + + G+ + Y+ Q + TV E+I+ + KL Sbjct: 375 VRLDGADLKQWDRETFGKHI--GYLPQDVELFPG--TVAENIARFGENADPEKIIEAAKL 430 Query: 412 NG-HEINSR---AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467 G HE+ R Y + G +LSGGQR R+ LA+ L +++LDEP + Sbjct: 431 AGVHELILRLPDGYDTVIGPGG-------ATLSGGQRQRIALARALYGDPKLVVLDEPNS 483 Query: 468 DLDTETLSALEDALENF---AGCAVIISH 493 +LD E AL +A++ V+I+H Sbjct: 484 NLDEEGEQALANAIKALKARGITVVVITH 512 >gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 230 Score = 80.6 bits (200), Expect = 1e-15 Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 26/166 (15%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377 E ++ Y ++ +S ++P G + V+G NG GKTTL + L G SG+I + G Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61 Query: 378 ETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY----- 421 E + ++YV Q R+ TV E++ G + +I Y Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIF-PRLTVEENLLTGLAALPRRSRKIPDEIYELFPV 120 Query: 422 CSAF-NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 +GGD LSGGQ+ ++ +A+ L + ++LLDEPT Sbjct: 121 LKEMLGRRGGD-------LSGGQQQQLAIARALVTRPKLLLLDEPT 159 Score = 59.1 bits (144), Expect = 3e-09 Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 63/238 (26%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGFT---- 70 +G +L ++L +LG NG GK+T+L+ + G+ +G T Sbjct: 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPP 69 Query: 71 -------VGYLPQE----PQLDLSKTVKENIIEGVA----HKQAILDRYNELMMNYSEKT 115 + Y+PQ P+L TV+EN++ G+A + I D EL Sbjct: 70 HERARAGIAYVPQGREIFPRL----TVEENLLTGLAALPRRSRKIPDEIYELF------- 118 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 L++++ +G G LSGG+++++A+ + L++ P Sbjct: 119 ----PVLKEMLGRRG--------------------GD----LSGGQQQQLAIARALVTRP 150 Query: 176 DLLLLDEPTNHLDAETIAWME---KYLREYSG-AVLMVTHDRYFLDNVTNWILEVDRG 229 LLLLDEPT + I + + LR G A+L+V F + + ++RG Sbjct: 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERG 208 >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional. Length = 501 Score = 80.3 bits (199), Expect = 1e-15 Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 53/213 (24%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377 GI K++ +D++SF G + ++G NGAGK+TL ++L+G+ PD+G+I + G Sbjct: 6 SFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG 65 Query: 378 ETVCLSYVDQSRDSLEA-------------EKTVWEDI-------SGGDDIVKLNGHEIN 417 + + + +L A E TV E++ GG +N +N Sbjct: 66 QEMRFAST---TAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGG----IVNRRLLN 118 Query: 418 SRAYCSAFNFKGGDQQQRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTN 467 A +Q + +G LS GQR V +AK L VI DEPT+ Sbjct: 119 YEA---------REQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTS 169 Query: 468 DL---DTETLSALEDALENFAGCAVI-ISHDRM 496 L + E L + L G ++ +SH RM Sbjct: 170 SLSAREIEQLFRVIRELRA-EGRVILYVSH-RM 200 Score = 61.9 bits (151), Expect = 5e-10 Identities = 60/219 (27%), Positives = 93/219 (42%), Gaps = 47/219 (21%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW------ 64 G+ K F K LDDI+ ++G NGAGKST+L+I++G + G Sbjct: 9 GIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEM 68 Query: 65 --------LATGFTVGYLPQEPQLDLSKTVKENIIEG-VAHKQAILDRYNELMMNYSEKT 115 LA G + Y QE L TV EN+ G + HK I++R L+ + Sbjct: 69 RFASTTAALAAGVAIIY--QELHLVPEMTVAENLYLGQLPHKGGIVNR--RLLN---YEA 121 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 E++ L ID +T ++ LS G+++ V + K L + Sbjct: 122 REQLEHLGVDIDP------DTPLK----------------YLSIGQRQMVEIAKALARNA 159 Query: 176 DLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTH 211 ++ DEPT+ L A I + + LR +L V+H Sbjct: 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSH 198 Score = 56.5 bits (137), Expect = 2e-08 Identities = 49/207 (23%), Positives = 89/207 (42%), Gaps = 29/207 (14%) Query: 313 LGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 LG V + G+ L + +SF + G IVG+ G GAG++ L ++L G +G Sbjct: 253 LGEVRLRLDGLKG----PGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG 308 Query: 373 TIHV-GETVCLSYV-------------DQSRDSLEAEKTVWEDI--------SGGDDIVK 410 +++ G+ + + D+ + + +V ++I ++ Sbjct: 309 QVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLIN 368 Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 N+ + + N K ++Q I +LSGG + + L + L VILLDEPT +D Sbjct: 369 NRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428 Query: 471 TETLSALEDALENFA--GCAVI-ISHD 494 + + + A G AV+ +S D Sbjct: 429 VGAKHEIYNVIYELAAQGVAVLFVSSD 455 Score = 30.3 bits (69), Expect = 1.3 Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 I +LSGG +++ L + L ++LLDEPT +D Sbjct: 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428 >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional. Length = 351 Score = 80.1 bits (198), Expect = 1e-15 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 23/169 (13%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 + K I+K + +IDNL+ + G +V ++GP+G GKTT+ R++ G E P G I + Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66 Query: 377 GETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAY------- 421 GE V + Q RD +L ++ E++ G ++ + E R Sbjct: 67 GEDVTHRSI-QQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVD 125 Query: 422 CSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + F + DQ +SGGQ+ RV LA+ L V+L DEP ++LD Sbjct: 126 LAGFEDRYVDQ------ISGGQQQRVALARALILKPKVLLFDEPLSNLD 168 Score = 50.9 bits (122), Expect = 9e-07 Identities = 21/51 (41%), Positives = 37/51 (72%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62 ++K FGS V+D++NL+ + +LGP+G GK+T+LR++AG++K G+ Sbjct: 12 ITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62 Score = 48.2 bits (115), Expect = 5e-06 Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 4/78 (5%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 +SGG+++RVAL + L+ P +LL DEP ++LDA M + +RE ++ L VTHD Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196 Query: 213 RYFLDNVTNWILEVDRGK 230 + V++ ++ +++GK Sbjct: 197 QSEAFAVSDTVIVMNKGK 214 >gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. Length = 710 Score = 79.6 bits (197), Expect = 2e-15 Identities = 67/226 (29%), Positives = 107/226 (47%), Gaps = 51/226 (22%) Query: 308 PVGKRLGHVVIEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 P + G+V E + I+ Y+ + LI+N S L PG V ++G +G+GK+T+ +++ G Sbjct: 470 PSPRLSGYV--ELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG 527 Query: 366 DESPDSGTI--------HVGETV---CLSYVDQS--------RDSLEAEKTVWEDISGGD 406 P SG I + V ++ VDQ RD+L T+W+ Sbjct: 528 LYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNL----TLWDPTIPDA 583 Query: 407 DIVKLNG----H-EINSRAYCSAFNFKGGDQQQRI---GSLSGGQRGRVHLAKILKSGGN 458 D+V+ H I SR GG + +LSGGQR R+ +A+ L + Sbjct: 584 DLVRACKDAAIHDVITSR--------PGGYDAELAEGGANLSGGQRQRLEIARALVRNPS 635 Query: 459 VILLDEPTNDLDTETLSALEDALENFAGCA-VIISHDRMFLDRLAT 503 +++LDE T+ LD ET ++D L GC +I++H RL+T Sbjct: 636 ILILDEATSALDPETEKIIDDNLRR-RGCTCIIVAH------RLST 674 Score = 61.5 bits (150), Expect = 5e-10 Identities = 49/215 (22%), Positives = 92/215 (42%), Gaps = 62/215 (28%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-------------AWLAT 67 ++++ +L+ P ++ ++G +G+GKSTI +++AG+ + ++GE LA Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLAN 553 Query: 68 GFTVGYLPQEPQLDLSKTVKENI-----------IEGVAHKQAILDRYNELMMNYSEKTE 116 +V + Q+ L TV++N+ + AI D Sbjct: 554 --SVAMVDQDIFL-FEGTVRDNLTLWDPTIPDADLVRACKDAAIHD-------------- 596 Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 I + E+ E G N LSGG+++R+ + + L+ +P Sbjct: 597 -VITSRPG--------GYDAEL---AE------GGAN---LSGGQRQRLEIARALVRNPS 635 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTH 211 +L+LDE T+ LD ET ++ LR ++V H Sbjct: 636 ILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670 >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional. Length = 510 Score = 79.4 bits (196), Expect = 2e-15 Identities = 114/520 (21%), Positives = 198/520 (38%), Gaps = 129/520 (24%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI----- 55 MA +I MAG+ K FG L +NL+ YP +LG NGAGKST++++++GI Sbjct: 1 MATPYI-SMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTK 59 Query: 56 ------DKEYNG-EAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM 108 + YN + LA +G + QE + TV EN+ G + + Sbjct: 60 GTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNI 116 Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168 +++ E A + + K DL+ +V +LS K+ + + Sbjct: 117 IDWRE-MRVRAAMMLLRVGLK--VDLDEKVA----------------NLSISHKQMLEIA 157 Query: 169 KLLLSSPDLLLLDEPTNHLDAETIAWM---EKYLREYSGAVLMVTHDRYFLDNVTNWILE 225 K L+ ++++DEPT+ L + + ++ LR+ A++ ++H I Sbjct: 158 KTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHK-------LAEIRR 210 Query: 226 V-DRGKGIPYQGNYSAYLQMK-----AKRMAQENREEISRQKAIERERDWIVSSPKARQS 279 + DR Y MK M + D IV R+ Sbjct: 211 ICDR------------YTVMKDGSSVCSGMVS------------DVSNDDIVRLMVGREL 246 Query: 280 KSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFK 339 ++ R + V V E + ++ DR + ++SF Sbjct: 247 QN----------------RFNAMKEN---VSNLAHETVFEVRNVTS--RDRKKVRDISFS 285 Query: 340 LPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC-----------LSYVDQ 387 + G I+G G G+G+T L L G + G I + G+ + ++Y+ + Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 Query: 388 SRDSLEAEKTVWEDISGGDDI-----VKLNG--------HEINSRAYCSA----FNFKGG 430 SR + + + S ++ +K G HE++ + K Sbjct: 346 SR----RDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCH 401 Query: 431 DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 Q I LSGG + +V ++K L VI+ DEPT +D Sbjct: 402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGID 441 Score = 64.0 bits (156), Expect = 9e-11 Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 28/201 (13%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 I GI KS+ + +++ + PG I ++G NGAGK+TL ++L+G P GTI + Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65 Query: 378 ET------------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVK-------LNGHEINS 418 + + + Q S+ E TV E++ G + K ++ E+ Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQEL-SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV 124 Query: 419 RAYCSAFNFKGG---DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL---DTE 472 RA + + G D +++ +LS + + +AK L VI++DEPT+ L + + Sbjct: 125 RA--AMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182 Query: 473 TLSALEDALENFAGCAVIISH 493 L + + L V ISH Sbjct: 183 YLFLIMNQLRKEGTAIVYISH 203 Score = 57.1 bits (138), Expect = 1e-08 Identities = 57/203 (28%), Positives = 88/203 (43%), Gaps = 24/203 (11%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 KKV DI+ S +G G G+G++ ++ + G+DK GE L P+ P Sbjct: 277 KKV-RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL---NGKDISPRSP 332 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL---E 135 LD K I E R N N+S I++ KG L Sbjct: 333 -LDAVKKGMAYITES--------RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEV 383 Query: 136 TEVQVAIE-----SLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 E + A +L C + NIT LSGG +++V + K L P++++ DEPT +D Sbjct: 384 DEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVG 443 Query: 191 TIAWMEKYLREYSG---AVLMVT 210 A + K +R+ + +LMV+ Sbjct: 444 AKAEIYKVMRQLADDGKVILMVS 466 >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. Length = 243 Score = 79.6 bits (197), Expect = 2e-15 Identities = 60/210 (28%), Positives = 96/210 (45%), Gaps = 44/210 (20%) Query: 11 GLSKVFGS-KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYNGEA 63 LSKV+ + K+ L +INL+ P + I+GP+GAGKST+LR + + G Sbjct: 6 NLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTD 65 Query: 64 WLATG--------FTVGYLPQEPQLDLSKTVKENIIEG-VAHK---QAILDRYNELMMNY 111 +G + Q L TV EN++ G + +K +++L R+ Sbjct: 66 ITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF------- 118 Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 +EE+ + ++ GL D + AD LSGG+++RVA+ + L Sbjct: 119 ---SEEDKERALSALERVGLADKA----------YQRAD-----QLSGGQQQRVAIARAL 160 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLRE 201 PDL+L DEP LD +T + YL+ Sbjct: 161 AQQPDLILADEPIASLDPKTSKQVMDYLKR 190 Score = 78.9 bits (195), Expect = 3e-15 Identities = 67/251 (26%), Positives = 108/251 (43%), Gaps = 47/251 (18%) Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 ++E + +SK Y N + + N++ + PG V +IGP+GAGK+TL R + P SG+I Sbjct: 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60 Query: 376 V-GETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY 421 + G + + + Q + L TV E++ L+G + Sbjct: 61 LEGTDITKLRGKKLRKLRRRIGMIFQHYN-LIERLTVLENV--------LHGRLGYKPTW 111 Query: 422 CSAFN-FKGGDQQ----------------QRIGSLSGGQRGRVHLAKILKSGGNVILLDE 464 S F D++ QR LSGGQ+ RV +A+ L ++IL DE Sbjct: 112 RSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171 Query: 465 PTNDLDTETLSALEDALENFA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGN 520 P LD +T + D L+ G VII+ H + A I+ + G + F+G Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLK-AGEI-VFDGA 229 Query: 521 FEEYEKDKLSR 531 E + + L Sbjct: 230 PSELDDEVLRH 240 >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional. Length = 255 Score = 79.3 bits (196), Expect = 2e-15 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 39/180 (21%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + + ++ Y + ++++LS LP G I +IGPNG GK+TL + +P SGT+ +G Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62 Query: 378 ETV-----------CLSYVDQSRDSLEAEK-------------TVWEDISGGDD-IVK-- 410 + L+ + Q + E ++W +S D+ V Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA 122 Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + IN A +R+ LSGGQR R LA +L V+LLDEPT LD Sbjct: 123 MEQTRINHLA------------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 Score = 70.8 bits (174), Expect = 9e-13 Identities = 61/227 (26%), Positives = 97/227 (42%), Gaps = 54/227 (23%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 L+ +G+K++L+D++LS P KI ++GPNG GKST+L+ A + +G +L Sbjct: 8 LTVGYGTKRILNDLSLSL-PTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI 66 Query: 67 TGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR--YNELMMNYSEKTEE 117 + + + LPQ TV+E + G R + L S + Sbjct: 67 SMLSSRQLARRLALLPQHHLTPEGITVRELVAYG---------RSPWLSLWGRLSAEDNA 117 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCP--ADGLNITSLSGGEKRRVALCKLLLSSP 175 V A+E AD +T LSGG+++R L +L Sbjct: 118 R-------------------VNQAMEQTRINHLADRR-LTDLSGGQRQRAFLAMVLAQDT 157 Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHD-----RY 214 ++LLDEPT +LD + + +RE + V+ V HD RY Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRY 204 >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. Length = 354 Score = 78.6 bits (194), Expect = 3e-15 Identities = 54/210 (25%), Positives = 88/210 (41%), Gaps = 54/210 (25%) Query: 24 DINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY------NGEAWLATG---FT---- 70 D + + I G +G+GK+T++R++AG+ + NG + F Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74 Query: 71 --VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDS 128 +GY+ QE +L +V+ N+ G + + E + +L Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYG----------MKRARPSERRISFERVIEL------ 118 Query: 129 KGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 + I L P LSGGEK+RVA+ + LLSSP LLL+DEP Sbjct: 119 -----------LGIGHLLGRLPGR------LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161 Query: 187 LD----AETIAWMEKYLREYSGAVLMVTHD 212 LD E + ++E+ E+ +L V+H Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHS 191 Score = 66.3 bits (162), Expect = 2e-11 Identities = 60/212 (28%), Positives = 89/212 (41%), Gaps = 24/212 (11%) Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GET-- 379 SK D L + F LP G+ + G +G+GKTTL R++ G PD G I + G T Sbjct: 5 FSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLF 62 Query: 380 -----VCLS-------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF 427 + L YV Q L +V ++ G + + I+ Sbjct: 63 DSRKGIFLPPEKRRIGYVFQEA-RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGI 121 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALEN 483 G + G LSGG++ RV + + L S ++L+DEP LD E L LE Sbjct: 122 -GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180 Query: 484 FAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 F + +SH + RLA ++ E +G V Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLE-DGRVA 211 >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 78.3 bits (193), Expect = 4e-15 Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 47/231 (20%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG-------- 68 GSK+ L++IN +++I ++GPNGAGKST+ R GI K +G L G Sbjct: 15 GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV-LIRGEPITKENI 73 Query: 69 ----FTVGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 VG + Q P + S TV+++I G + + E+T ++ Sbjct: 74 REVRKFVGLVFQNPDDQIFSPTVEQDIAFGPIN------------LGLDEETVAH--RVS 119 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 + GL +L V H LSGGEK+RVA+ ++ P +L+LDEP Sbjct: 120 SALHMLGLEELRDRVP------H---------HLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 Query: 184 TNHLD----AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 T LD E I ++ Y V+ TH + + ++I +D+G+ Sbjct: 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215 Score = 75.6 bits (186), Expect = 3e-14 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 22/238 (9%) Query: 317 VIEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IE + + SY+ + ++N++F P + VIGPNGAGK+TLFR G P SG++ Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62 Query: 376 V-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 + GE + + V Q+ D TV +DI+ G + L+ + R SA Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRV-SSA 121 Query: 425 FNFKG-GDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482 + G + + R+ LSGG++ RV +A ++ V++LDEPT LD + + L D L Sbjct: 122 LHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 Query: 483 NFA---GCAVIIS-HDRMFLDRLATHILAFEGNGHVEWFEGNFEE-YEKDKLSRSSRV 535 + G VI S H + +A +I + G + G EE + + L + Sbjct: 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMD-KGRIVA-YGTVEEIFLQPDLLARVHL 237 >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional. Length = 490 Score = 78.1 bits (193), Expect = 6e-15 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 36/210 (17%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFL 216 LS GE R+ LC+ L+S PDLL+LDEP + LD + + + L + + + Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITL------- 188 Query: 217 DNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKA 276 +L ++R IP ++ L REEI + +V+ Sbjct: 189 ------VLVLNRFDEIPDFVQFAGVLA-DCTLAETGEREEI--------LQQALVAQLA- 232 Query: 277 RQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNL 336 S+ ++ E SA H P N I+ L + V+ SYNDR ++ NL Sbjct: 233 -HSEQLEGVQLPEPDEPSARHALPANEPRIV-----LNNGVV-------SYNDRPILHNL 279 Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGD 366 S+++ PG ++GPNGAGK+TL ++TGD Sbjct: 280 SWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 Score = 48.5 bits (116), Expect = 4e-06 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 49/193 (25%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID--KEYNGEAWL-----ATG 68 + + +L +++ P I+GPNGAGKST+L ++ G D + Y+ + L +G Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSG 328 Query: 69 FTV-------GYLPQEPQLD--LSKTVKENIIEG----VAHKQAILDRYNELMMNYSEKT 115 T+ GY+ LD +S +V+ I+ G + QA+ DR +L + Sbjct: 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQW---- 384 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 L L + + A H SLS G++R + + L+ P Sbjct: 385 ---------------LDILGIDKRTADAPFH---------SLSWGQQRLALIVRALVKHP 420 Query: 176 DLLLLDEPTNHLD 188 LL+LDEP LD Sbjct: 421 TLLILDEPLQGLD 433 Score = 35.0 bits (81), Expect = 0.050 Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 23/167 (13%) Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEA-E 395 S L G +G NG+GK+ L R L G+ S GE + +R S E + Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLS-----GERQS-QFSHITRLSFEQLQ 76 Query: 396 KTV---WED-----ISGGDD-------IVKLNGHEINSRAYCSAFNFKGGD-QQQRIGSL 439 K V W+ +S G+D + + + +R A F +R L Sbjct: 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYL 136 Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG 486 S G+ + L + L S ++++LDEP + LD + L + L + Sbjct: 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ 183 >gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed. Length = 375 Score = 77.7 bits (192), Expect = 8e-15 Identities = 53/172 (30%), Positives = 87/172 (50%), Gaps = 27/172 (15%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E +GISKS++ + +I NL + G + ++GP+G GKTT+ R++ G E+PDSG I + Sbjct: 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73 Query: 377 GETVCLSYVDQSRDSLEAEK----------------TVWEDISGGDDIVKLNGHEINSRA 420 Q + AE TV+E+++ G + K EI R Sbjct: 74 D--------GQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRV 125 Query: 421 YCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 A ++ Q++ LSGGQ+ RV +A+ + + V+LLDE + LD Sbjct: 126 M-EALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176 Score = 76.1 bits (188), Expect = 2e-14 Identities = 62/232 (26%), Positives = 104/232 (44%), Gaps = 54/232 (23%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 + + + G+SK F K+V+ +++L+ + +LGP+G GK+T+LR++AG + + Sbjct: 9 SSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDS 68 Query: 61 GEAWLATGFTVGYLPQE--------------PQLDLSKTVKENIIEGVAHKQAILDRYNE 106 G L G + ++P E P + TV EN+ G Sbjct: 69 GRIMLD-GQDITHVPAENRHVNTVFQSYALFPHM----TVFENVAFG------------- 110 Query: 107 LMMNYSEKT-EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRV 165 L M +KT EI +E V +E A LSGG+++RV Sbjct: 111 LRM---QKTPAAEITPRV----------MEALRMVQLEEF---AQ-RKPHQLSGGQQQRV 153 Query: 166 ALCKLLLSSPDLLLLDEPTNHLDAETIAWME---KYL-REYSGAVLMVTHDR 213 A+ + +++ P +LLLDE + LD + M+ K L R+ + VTHD+ Sbjct: 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ 205 >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 Score = 77.3 bits (190), Expect = 8e-15 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 22/200 (11%) Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD--S 371 G + I+ + +Y ++D+LS ++ G ++ +IG +G GKTTL R + G + Sbjct: 4 GGIRIDH--LRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61 Query: 372 GTIHVGETVCLSYVDQSRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 G I + + R +L V ++++ G K+ +I R + Sbjct: 62 GRIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADA 121 Query: 424 AFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT-------ETLS 475 GD + LSGG + R+ +A+ + +V+LLDEP + LD E ++ Sbjct: 122 LKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIA 181 Query: 476 ALEDALENFAGCAVIISHDR 495 AL + L + ++HD+ Sbjct: 182 ALHEELPELT--ILCVTHDQ 199 Score = 73.5 bits (180), Expect = 1e-13 Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 51/221 (23%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT- 70 L +G+ VLDD++L + ++G +G GK+T+LR +AG K +A Sbjct: 11 LRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD 70 Query: 71 ----------VGYLPQEPQLDLSKTVKENIIEGV-AHKQAILDRYNELMMNYSEKTEEEI 119 + L Q L V++N+ G+ A K D Sbjct: 71 LTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKAD----------------- 113 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 I + L+ V + + H PA LSGG ++R+A+ + + PD+LL Sbjct: 114 ------IAERVADALKL-VGLGDAAAHLPA------QLSGGMQQRIAIARAIAIEPDVLL 160 Query: 180 LDEPTNHLDA-------ETIAWMEKYLREYSGAVLMVTHDR 213 LDEP + LDA E IA + + L E + +L VTHD+ Sbjct: 161 LDEPLSALDANIRANMREEIAALHEELPELT--ILCVTHDQ 199 >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 Score = 76.7 bits (189), Expect = 1e-14 Identities = 53/201 (26%), Positives = 96/201 (47%), Gaps = 20/201 (9%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E K +SK + + ++N+S +P + G++GPNGAGK+TL +M+TG P SG I Sbjct: 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII-- 58 Query: 378 ETVCLSYVDQSRDSLEA------EKTVWEDISGGDD--IVKLNGHEINSR--AYCSAFNF 427 +R L ++E+++ ++ + +SR + + Sbjct: 59 ----FDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDL 114 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485 +++ S G + R+ +A L + +++LDEPTN LD + L + + +F Sbjct: 115 -TNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 Query: 486 GCAVII-SHDRMFLDRLATHI 505 G VI+ SH + +LA HI Sbjct: 174 GITVILSSHILSEVQQLADHI 194 Score = 70.5 bits (173), Expect = 1e-12 Identities = 51/201 (25%), Positives = 92/201 (45%), Gaps = 40/201 (19%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE------YNGEAW 64 LSK FG + +++I+L+ ++ G+LGPNGAGKST+L+++ GI + ++G W Sbjct: 5 NLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPW 64 Query: 65 LATGF-TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 +G L + P L + T +EN+ + + ++ + +E+ + Sbjct: 65 TRKDLHKIGSLIESPPLYENLTARENL------------KVHTTLLGLPDSRIDEVLNIV 112 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 D+ ++ S G K+R+ + LL+ P LL+LDEP Sbjct: 113 DLTNT---------------------GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEP 151 Query: 184 TNHLDAETIAWMEKYLREYSG 204 TN LD I + + +R + Sbjct: 152 TNGLDPIGIQELRELIRSFPE 172 >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional. Length = 242 Score = 76.2 bits (188), Expect = 2e-14 Identities = 63/267 (23%), Positives = 116/267 (43%), Gaps = 61/267 (22%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF- 69 G++ +G+ + L DI L + +LGP+GAGKS++LR++ ++ +G +A Sbjct: 7 GINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF 66 Query: 70 ----------------TVGYLPQEPQLDLSKTVKENIIE------GVAHKQAILDRYNEL 107 VG + Q+ L TV++N+IE G++ QA+ Sbjct: 67 DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL------- 119 Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167 + E+ + +L+ + + L LSGG+++RVA+ Sbjct: 120 -----ARAEKLLERLR-LKPYADRFPLH---------------------LSGGQQQRVAI 152 Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWIL 224 + L+ P +LL DEPT LD E A + +RE + ++VTH+ + ++ Sbjct: 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212 Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQ 251 ++ G I QG+ S + Q + + Sbjct: 213 YMENGH-IVEQGDASCFTQPQTEAFKN 238 Score = 60.8 bits (148), Expect = 9e-10 Identities = 57/230 (24%), Positives = 97/230 (42%), Gaps = 46/230 (20%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 I+ GI+ Y + +++ P G + ++GP+GAGK++L R+L E P SGT+++ Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62 Query: 377 GETVCLSYVDQSRDSLEAEK---------------TVWED-ISGGDDIVKLNGHEINSRA 420 G S + E + TV ++ I ++ L+ + +RA Sbjct: 63 GNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARA 122 Query: 421 -----------YCSAF--NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467 Y F + GG QQ RV +A+ L V+L DEPT Sbjct: 123 EKLLERLRLKPYADRFPLHLSGGQQQ------------RVAIARALMMEPQVLLFDEPTA 170 Query: 468 DLDTETLSALEDALENFAGCA---VIISHDRMFLDRLATHILAFEGNGHV 514 LD E + + + A VI++H+ + A+ ++ E NGH+ Sbjct: 171 ALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYME-NGHI 219 >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional. Length = 588 Score = 76.2 bits (188), Expect = 2e-14 Identities = 79/272 (29%), Positives = 126/272 (46%), Gaps = 47/272 (17%) Query: 281 SKARIRSYEELVESAAHRH-PGNAQIIIPVGKRLGHVVIEAKGISKSY-NDRLLIDNLSF 338 + ++ + E+ ++ P A I +G+ G V + +S SY N R ++++SF Sbjct: 302 AAPKLEEFFEVEDAVPDVRDPPGA---IDLGRVKGAVEFD--DVSFSYDNSRQGVEDVSF 356 Query: 339 KLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSL----- 392 + PG V ++GP GAGK+TL +L P SG I + G + +R SL Sbjct: 357 EAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIR----TVTRASLRRNIA 412 Query: 393 ----EA---EKTVWEDIS-GGDDIVKLNGHEINSRAYCSAF---NFKGGDQQ--QRIGSL 439 +A +++ ++I G D RA F G D +R L Sbjct: 413 VVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN-------FAGCAVIIS 492 SGG+R R+ +A+ L +++LDE T+ LD ET + ++ AL+ F II+ Sbjct: 473 SGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTF-----IIA 527 Query: 493 HDRMFLDRLATHILAFEGNGH-VEWFEGNFEE 523 H R+ R A IL F+ NG VE G+F+E Sbjct: 528 H-RLSTVRNADRILVFD-NGRVVE--SGSFDE 555 Score = 57.3 bits (139), Expect = 1e-08 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 48/192 (25%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL------------RIMA-GIDKEYNGEA 63 S++ ++D++ P + I+GP GAGKST++ RI+ G D A Sbjct: 346 NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRA 405 Query: 64 WL----ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 L A F Q+ L ++++++NI G D +E M +E Sbjct: 406 SLRRNIAVVF------QDAGL-FNRSIEDNIRVGRP------DATDEEMRAAAE-----R 447 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 A+ D I+ K +T V G LSGGE++R+A+ + LL P +L+ Sbjct: 448 AQAHDFIERKPD-GYDTVV------------GERGRQLSGGERQRLAIARALLKDPPILI 494 Query: 180 LDEPTNHLDAET 191 LDE T+ LD ET Sbjct: 495 LDEATSALDVET 506 >gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP) Family protein. Length = 216 Score = 75.9 bits (187), Expect = 2e-14 Identities = 60/221 (27%), Positives = 102/221 (46%), Gaps = 26/221 (11%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP- 75 G + LD++N + ++G +GAGKST L+++ GI+K G+ G + L Sbjct: 14 GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFN-GQDLTRLRG 72 Query: 76 -QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134 + P L + +I G+ + + L+ ++T + I D Sbjct: 73 REIPFL------RRHI--GMVFQD------HRLLS---DRTVYDNVAFPLRIIGVPPRDA 115 Query: 135 ETEVQVAIES--LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192 V A+E L A L + LSGGE++RVA+ + ++ P LLL DEPT +LD E Sbjct: 116 NERVSAALEKVGLEGKAHALPMQ-LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELS 174 Query: 193 AWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGK 230 + + E++ VL+ THD ++ + L + RG+ Sbjct: 175 RDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 Score = 73.2 bits (180), Expect = 2e-13 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 21/213 (9%) Query: 317 VIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +I + +SK+Y + +DNL+F + G +V ++G +GAGK+T +++ G E P G I Sbjct: 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI 60 Query: 375 HV-GETVC-------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420 G+ + + V Q L ++TV+++++ I+ + + N R Sbjct: 61 RFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS-DRTVYDNVAFPLRIIGVPPRDANERV 119 Query: 421 YCSAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALED 479 + + + LSGG++ RV +A+ + ++L DEPT +LD E + Sbjct: 120 SAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMR 179 Query: 480 ALENF--AGCAVII-SHDRMFLDRLATHILAFE 509 E F G V++ +HD ++ L Sbjct: 180 LFEEFNRRGTTVLVATHDINLVETYRHRTLTLS 212 >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 74.9 bits (184), Expect = 4e-14 Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 37/236 (15%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 L FG +VLD +NL + ++GP+G+GKST+LR+ + + Y EA ++ Sbjct: 8 DLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP-EARVSG--- 63 Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNE-------------LMMNYSEKTEE 117 E LD K ++IE Q + N L +N K+++ Sbjct: 64 ------EVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117 Query: 118 EI-AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 E+ +++ ++ LWD EV+ + L PA LSGG+++R+ + + L P+ Sbjct: 118 ELQERVRWALEKAQLWD---EVK---DRLDAPA-----GKLSGGQQQRLCIARALAFQPE 166 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGK 230 +LL DEPT +LD E A +E E +++VTH +++++ + +G+ Sbjct: 167 VLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQ 222 Score = 57.6 bits (139), Expect = 7e-09 Identities = 46/184 (25%), Positives = 93/184 (50%), Gaps = 22/184 (11%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DESPDS 371 IE + + S+ ++D ++ ++P I ++GP+G+GK+TL R+ E+ S Sbjct: 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62 Query: 372 GTIHV-GETVCLSYVDQSRDSLE---------AEKTVWEDISGGDDIVKL--NGHEINSR 419 G +++ G+ + V + R ++ +++E+++ G + +L + E+ R Sbjct: 63 GEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQER 122 Query: 420 AYCSAFNFKGGDQ-QQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 + + D+ + R+ G LSGGQ+ R+ +A+ L V+L DEPT +LD E Sbjct: 123 VRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENT 182 Query: 475 SALE 478 + +E Sbjct: 183 AKIE 186 >gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed. Length = 588 Score = 74.5 bits (184), Expect = 6e-14 Identities = 65/258 (25%), Positives = 115/258 (44%), Gaps = 51/258 (19%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG---------ID----KEYNGEAWL 65 K + +N + +I ++GP+GAGK+++L + G I+ +E + E+W Sbjct: 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWR 422 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 + ++ Q PQL T+++N++ + + A ++ + + N A + + Sbjct: 423 KH---LSWVGQNPQL-PHGTLRDNVL--LGNPDASDEQLQQALEN---------AWVSEF 467 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 + L+T + G LS G+ +R+AL + LL LLLLDEPT Sbjct: 468 LPLLPQ-GLDTPI------------GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTA 514 Query: 186 HLDAETIAWMEKYLREYSGA--VLMVTHDRYFLDNVTNW--ILEVDRGKGIPYQGNYSAY 241 LDA + + + L S LMVTH L+++ W I + G+ I QG+Y+ Sbjct: 515 SLDAHSEQLVMQALNAASRRQTTLMVTHQ---LEDLAQWDQIWVMQDGQ-IVQQGDYAEL 570 Query: 242 LQMKA--KRMAQENREEI 257 Q + +EEI Sbjct: 571 SQAGGLFATLLAHRQEEI 588 Score = 65.6 bits (161), Expect = 3e-11 Identities = 67/266 (25%), Positives = 110/266 (41%), Gaps = 49/266 (18%) Query: 289 EELVE--SAAHRHPGNAQIIIPVGKRLGHVVIEAKGIS-KSYNDRLLIDNLSFKLPPGGI 345 E LV HP + + V IEA+ + S + + L L+F LP G Sbjct: 322 ESLVTFLETPLAHPQQGEKELASND---PVTIEAEDLEILSPDGKTLAGPLNFTLPAGQR 378 Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGET-----------VCLSYVDQSRDSLEA 394 + ++GP+GAGKT+L L G P G++ + LS+V Q + Sbjct: 379 IALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRKHLSWVGQ--NPQLP 435 Query: 395 EKTVWEDISGGDDIVKLNGHEINS---RAYCSAF--------NFKGGDQQQRIGSLSGGQ 443 T+ +++ G+ + ++ A+ S F + GDQ LS GQ Sbjct: 436 HGTLRDNVLLGN--PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQA---AGLSVGQ 490 Query: 444 RGRVHLAKILKSGGNVILLDEPTNDLDTET----LSALEDALENFAGCAVIISHDRMFLD 499 R+ LA+ L ++LLDEPT LD + + AL A ++++H L+ Sbjct: 491 AQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRR--QTTLMVTHQ---LE 545 Query: 500 RLAT--HILAFEGNGHVEWFEGNFEE 523 LA I + V+ +G++ E Sbjct: 546 DLAQWDQIWVMQDGQIVQ--QGDYAE 569 >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 74.2 bits (182), Expect = 7e-14 Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 15/188 (7%) Query: 320 AKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE- 378 AK ++K+Y R +++++S + G IVG++GPNGAGKTT F M+ G D+G I + + Sbjct: 6 AKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65 Query: 379 -TVCLSYVDQSRDS---LEAEKTVWEDISGGDDIV-------KLNGHEINSRAYCSAFNF 427 L ++R L E +++ +S D+++ L+ + RA F Sbjct: 66 DISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125 Query: 428 KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-- 484 + +G SLSGG+R RV +A+ L + ILLDEP +D ++ ++ +E+ Sbjct: 126 HIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD 185 Query: 485 AGCAVIIS 492 +G V+I+ Sbjct: 186 SGLGVLIT 193 Score = 71.1 bits (174), Expect = 6e-13 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 53/221 (23%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ 65 L+K + ++V++D++L+ +G+LGPNGAGK+T ++ GI G + Sbjct: 9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDIS 68 Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL-----DRYNELMMNYSEK 114 +GYLPQE + +V +N++ + + + DR NELM Sbjct: 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELM------ 122 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 E I L+D + SLSGGE+RRV + + L ++ Sbjct: 123 EEFHIEHLRDSMGQ---------------------------SLSGGERRRVEIARALAAN 155 Query: 175 PDLLLLDEPTNHLDAETIAWMEK---YLREYSGAVLMVTHD 212 P +LLDEP +D ++ +++ +LR+ VL+ H+ Sbjct: 156 PKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHN 196 >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. Length = 221 Score = 74.3 bits (183), Expect = 8e-14 Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 52/226 (23%) Query: 11 GLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA 66 L K + K VL ++LS + I+G +G+GKST+L ++ G+D +GE Sbjct: 6 NLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFN 65 Query: 67 ---------------TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111 +G++ Q L T EN+ + L+ Sbjct: 66 GQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPL------------LIGKK 113 Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 S K +E A ++ +V + H P++ LSGGE++RVA+ + L Sbjct: 114 SVKEAKERAY-----------EMLEKVGLEHRINHRPSE------LSGGERQRVAIARAL 156 Query: 172 LSSPDLLLLDEPTNHLDAET----IAWMEKYLREYSGAVLMVTHDR 213 ++ P L+L DEPT +LD M + RE + + L+VTHD Sbjct: 157 VNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL 202 Score = 72.8 bits (179), Expect = 2e-13 Identities = 52/213 (24%), Positives = 98/213 (46%), Gaps = 33/213 (15%) Query: 317 VIEAKGISKSYNDRLL----IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +++ + + K Y + L + +S + G IV ++G +G+GK+TL +L G ++P SG Sbjct: 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 Query: 373 TIHV-GETV-CLSYVDQSR------------DSLEAEKTVWEDISGGDDIVKLNGHEINS 418 + G+++ LS ++++ L + T E+++ I K + E Sbjct: 61 EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE 120 Query: 419 RAY--CSAFNFKGGDQQQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 RAY + RI LSGG+R RV +A+ L + +++L DEPT +LD Sbjct: 121 RAYEMLEKVGLE-----HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175 Query: 473 TLSALEDAL----ENFAGCAVIISHDRMFLDRL 501 + D + ++++HD +L Sbjct: 176 NAKIIFDLMLELNRELNTSFLVVTHDLELAKKL 208 >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 Score = 74.1 bits (182), Expect = 8e-14 Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 32/235 (13%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---AGIDK---EYNGEAWL 65 ++K FG VLD +N S K+ ++GP+G+GKSTILRI+ ID+ + GE Sbjct: 6 VTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLY 65 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENI------IEGVAHKQAILDRYNELMMNYSEKTEEEI 119 G L + L + ++ I HK + + ++ E Sbjct: 66 HMPGRNGPLVPADEKHLRQ-MRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE 124 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 + +++D GL D ++ H PA LSGG+++RVA+ + L P ++L Sbjct: 125 KRAMELLDMVGLAD---------KADHMPA------QLSGGQQQRVAIARALAMRPKVML 169 Query: 180 LDEPTNHLDAETIAWMEKYLR----EYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 DE T+ LD E + + +R E+ +L+VTH+ F + + D+G+ Sbjct: 170 FDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGR 224 Score = 56.8 bits (137), Expect = 1e-08 Identities = 64/254 (25%), Positives = 109/254 (42%), Gaps = 40/254 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 + ++K + ++D L+F + G V +IGP+G+GK+T+ R+L E D G I V Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 Query: 377 GETVCLSYVDQSRD-------------------------SLEAEKTVWEDISGGDDIVK- 410 GE Y R+ +L KTV ++++ +V Sbjct: 61 GEQ---LYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLG 117 Query: 411 LNGHEINSRAYCSAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTND 468 + E RA + G D+ + + LSGGQ+ RV +A+ L V+L DE T+ Sbjct: 118 MARAEAEKRAM-ELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSA 176 Query: 469 LDT----ETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE- 523 LD E L+ + ++++H+ F A + F+ VE +G +E Sbjct: 177 LDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE--QGKPDEI 234 Query: 524 YEKDKLSRSSRVLS 537 + + K R+ LS Sbjct: 235 FRQPKEERTREFLS 248 >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. Length = 223 Score = 73.7 bits (181), Expect = 1e-13 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 36/197 (18%) Query: 27 LSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT------VGYLPQ--EP 78 LS +G+LGPNGAGK+T+LR + G+ G +A +GY+PQ E Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV 138 D +V ++ G L R + A ++D + GL +L Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRR----------PCVADFAAVRDALRRVGLTELADR- 109 Query: 139 QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKY 198 + LSGG+++RV + + L + P +LLLDEP LD T + + Sbjct: 110 --------------PVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTEL 155 Query: 199 LREYSG---AVLMVTHD 212 E +G A+LM THD Sbjct: 156 FIELAGAGTAILMTTHD 172 Score = 71.4 bits (175), Expect = 5e-13 Identities = 57/181 (31%), Positives = 78/181 (43%), Gaps = 33/181 (18%) Query: 338 FKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG------ETVCLSYVDQSRD- 390 G ++G++GPNGAGKTTL R + G P GT+ V + YV Q + Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60 Query: 391 ----SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR----------I 436 + TV +SG GH R C A D +R + Sbjct: 61 AWDFPISVAHTV---MSG------RTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV 111 Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCA---VIISH 493 G LSGGQR RV +A+ L + +V+LLDEP LD T L + AG ++ +H Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171 Query: 494 D 494 D Sbjct: 172 D 172 >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. Length = 708 Score = 73.6 bits (181), Expect = 1e-13 Identities = 67/238 (28%), Positives = 116/238 (48%), Gaps = 45/238 (18%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT----- 70 +GS +L DI+L+ ++K I+G +G+GKST+ +++ G + +GE L GF+ Sbjct: 485 YGSN-ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL-NGFSLKDID 542 Query: 71 -------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 + YLPQEP + S ++ EN+ L+ +++EI Sbjct: 543 RHTLRQFINYLPQEPYI-FSGSILENL----------------LLGAKENVSQDEIWAAC 585 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 +I + K D+E L +S+SGG+K+R+AL + LL+ +L+LDE Sbjct: 586 EIAEIKD--DIENMPLGYQTELSEEG-----SSISGGQKQRIALARALLTDSKVLILDES 638 Query: 184 TNHLDAET---IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238 T++LD T I + L ++ V H R + ++ I+ +D GK I QG++ Sbjct: 639 TSNLDTITEKKI--VNNLLNLQDKTIIFVAH-RLSVAKQSDKIIVLDHGKIIE-QGSH 692 Score = 58.2 bits (141), Expect = 5e-09 Identities = 48/229 (20%), Positives = 96/229 (41%), Gaps = 45/229 (19%) Query: 318 IEAKGISKSYN-DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 I +S SY ++ ++S + ++G +G+GK+TL ++L G SG I + Sbjct: 474 IVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILL 533 Query: 377 GETVC-----------LSYVDQ----------------SRDSLEAEKTVWEDISGG---D 406 ++Y+ Q +++++ ++ +W D Sbjct: 534 NGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDE-IWAACEIAEIKD 592 Query: 407 DIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 DI + Y + + +G S+SGGQ+ R+ LA+ L + V++LDE T Sbjct: 593 DIENM------PLGYQTELSEEGS-------SISGGQKQRIALARALLTDSKVLILDEST 639 Query: 467 NDLDTETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 ++LDT T + + L N +I R+ + + + I+ + +E Sbjct: 640 SNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIE 688 >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional. Length = 252 Score = 73.7 bits (181), Expect = 1e-13 Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 71/239 (29%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI---MAGIDKE---- 58 I ++ LS + KK L+ ++L FYP+ ++GP+G+GKST+LR M ++ E Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64 Query: 59 ----YNGEAWLATGFTVGYLPQEPQLDLSK--------------TVKENIIEGV----AH 96 YNG Y P+ +DL K ++ EN++ G+ Sbjct: 65 GSIVYNGHNI--------YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIK 116 Query: 97 KQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS 156 + +LD E E+ + +WD EV+ + LH A G Sbjct: 117 DKQVLD----------EAVEKSLK-------GASIWD---EVK---DRLHDSALG----- 148 Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTH 211 LSGG+++RV + ++L +SP ++LLDEPT+ LD + +E+ L +Y+ +L+VT Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYT--MLLVTR 205 Score = 60.9 bits (148), Expect = 8e-10 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 58/207 (28%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371 +++ +S YN + ++++S P I +IGP+G+GK+TL R + D +P+ + Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64 Query: 372 GTIHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNG---- 413 G+I S D+++ K +++E++ G ++L G Sbjct: 65 GSIVYNGHNIYS---PRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYG---LRLKGIKDK 118 Query: 414 -----------------HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456 E+ R + SA LSGGQ+ RV +A++L + Sbjct: 119 QVLDEAVEKSLKGASIWDEVKDRLHDSAL------------GLSGGQQQRVCIARVLATS 166 Query: 457 GNVILLDEPTNDLDTETLSALEDALEN 483 +ILLDEPT+ LD + +E+ L Sbjct: 167 PKIILLDEPTSALDPISAGKIEETLLG 193 >gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional. Length = 501 Score = 73.5 bits (181), Expect = 1e-13 Identities = 60/203 (29%), Positives = 99/203 (48%), Gaps = 28/203 (13%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH- 375 +++ KGI K++ + + + PG ++ ++G NGAGK+T+ ++LTG + D+G+I Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63 Query: 376 VGETVCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVKLNGHEINSRAYC 422 +G+ V + + S EA + T+ E+I G + V G + Y Sbjct: 64 LGKEVTFN---GPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA 120 Query: 423 SA------FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL-DTETLS 475 A N + + +G LS G++ V +AK+L VI++DEPT+ L DTET S Sbjct: 121 EADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETES 179 Query: 476 ALEDALE-NFAGCA-VIISHDRM 496 E G V ISH R+ Sbjct: 180 LFRVIRELKSQGRGIVYISH-RL 201 Score = 67.3 bits (165), Expect = 1e-11 Identities = 54/196 (27%), Positives = 87/196 (44%), Gaps = 40/196 (20%) Query: 309 VGKRL-----------GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357 VG++L G V ++ +S ++++SF L G I+GV G GAG+T Sbjct: 238 VGRKLEDQYPRLDKAPGEVRLKVDNLSGPG-----VNDVSFTLRKGEILGVSGLMGAGRT 292 Query: 358 TLFRMLTGDESPDSGTIHV-GETVC-----------LSYV--DQSRDSLEAEKTVWEDIS 403 L ++L G SG + + G V + Y+ D+ RD L +V E++S Sbjct: 293 ELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMS 352 Query: 404 --GGDDIVKLNGHEINSRA-------YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILK 454 + G + + FN K +Q IG LSGG + +V +A+ L Sbjct: 353 LTALRYFSRAGGS-LKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLM 411 Query: 455 SGGNVILLDEPTNDLD 470 + V++LDEPT +D Sbjct: 412 TRPKVLILDEPTRGVD 427 Score = 46.5 bits (111), Expect = 2e-05 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 26/107 (24%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK------EY 59 + + G+ K F K L L+ YP + ++G NGAGKST+++++ GI Y Sbjct: 4 LLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63 Query: 60 NGEAWLATGFT---------VGYLPQE----PQLDLSKTVKENIIEG 93 G+ F +G + QE PQL T+ ENI G Sbjct: 64 LGK---EVTFNGPKSSQEAGIGIIHQELNLIPQL----TIAENIFLG 103 Score = 40.0 bits (94), Expect = 0.002 Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 37/182 (20%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE---- 77 ++D++ + +G+ G GAG++ +++++ G +G L V PQ+ Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327 Query: 78 -----------PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 L L +VKEN+ L ++ S K +E + D I Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENM------SLTALRYFSRAG--GSLKHADEQQAVSDFI 379 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 L++++T P+ I LSGG +++VA+ + L++ P +L+LDEPT Sbjct: 380 R---LFNIKT-----------PSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 Query: 187 LD 188 +D Sbjct: 426 VD 427 >gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional. Length = 268 Score = 72.8 bits (179), Expect = 2e-13 Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 27/217 (12%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AW 64 Y GLS + VL++++LS + +LG +G GKST+ R++ G++ G +W Sbjct: 12 HYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSW 71 Query: 65 LATGFTVGYLPQEPQLDLSKTVK---ENIIEGVAHKQAILDRYNELMMNYSEKTEEE-IA 120 G + L + + + ++ ++ I V ++ + + E + + + E +A Sbjct: 72 R--GEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLA 129 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 + +++ + L D + P LSGG+ +RV L + L P LL+L Sbjct: 130 RASEMLRAVDL-DDSVLDK-------RPP------QLSGGQLQRVCLARALAVEPKLLIL 175 Query: 181 DEPTNHLD----AETIAWMEKYLREYSG-AVLMVTHD 212 DE ++LD A I ++K L++ G A L +THD Sbjct: 176 DEAVSNLDLVLQAGVIRLLKK-LQQQFGTACLFITHD 211 Score = 68.6 bits (168), Expect = 4e-12 Identities = 55/230 (23%), Positives = 98/230 (42%), Gaps = 29/230 (12%) Query: 309 VGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES 368 + H + K ++ +++N+S L G V ++G +G GK+TL R+L G ES Sbjct: 9 LSHHYAHGGLSGKHQHQT-----VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63 Query: 369 PDSGTIHVGETVCLSYVDQSR-------------DSLEA---EKTVWEDISGG-DDIVKL 411 P G + L+ +++++ DS+ A KTV E I ++ L Sbjct: 64 PSQGNVSWRGEP-LAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSL 122 Query: 412 N--GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469 + + A + +R LSGGQ RV LA+ L +++LDE ++L Sbjct: 123 DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182 Query: 470 D----TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 D + L+ + F + I+HD ++R ++ + VE Sbjct: 183 DLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. Length = 213 Score = 72.2 bits (177), Expect = 3e-13 Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 44/219 (20%) Query: 26 NLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL----ATGFT-----VGYLPQ 76 +L+ + I+GP+GAGKST+L ++AG + +G + TG V L Q Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK-TEEEIAKLQDIIDSKGLWDLE 135 E L TV++NI G ++ K E+ K+ D G+ D Sbjct: 78 ENNLFAHLTVRQNIGLG---------------LHPGLKLNAEQQEKVVDAAQQVGIADY- 121 Query: 136 TEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AET 191 ++ L P LSGG+++RVAL + L+ +LLLDEP + LD E Sbjct: 122 ------LDRL--PE------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167 Query: 192 IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 +A +++ E +LMVTH + + I V +GK Sbjct: 168 LALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGK 206 Score = 69.5 bits (170), Expect = 2e-12 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 16/204 (7%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386 Y L + G IV ++GP+GAGK+TL ++ G P SG+I V + Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67 Query: 387 QSR--------DSLEAEKTVWEDISGG-DDIVKLNGHEINSRAYCSAFNFKGGDQQQRI- 436 R ++L A TV ++I G +KLN + + +A D R+ Sbjct: 68 YQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQ-QEKVVDAAQQVGIADYLDRLP 126 Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIIS 492 LSGGQR RV LA+ L ++LLDEP + LD E L+ ++ ++++ Sbjct: 127 EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVT 186 Query: 493 HDRMFLDRLATHILAFEGNGHVEW 516 H +A+ I G ++ Sbjct: 187 HHLSDARAIASQIAVVS-QGKIKV 209 >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 72.2 bits (177), Expect = 3e-13 Identities = 61/230 (26%), Positives = 111/230 (48%), Gaps = 41/230 (17%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI--------- 51 + ++ +Y + G++ +G L +INLS + I+GP+G GKST ++ Sbjct: 7 VMKQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVP 66 Query: 52 ---MAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM 108 + G + YNG L + ++L K + +G Q+I D Sbjct: 67 NVKLTG-EMNYNGSNILKGKVDL--------VELRKNIGMVFQKGNPFPQSIFDNVAYGP 117 Query: 109 MNYSEKTEEEIAKLQDIIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164 + K ++ KLQ+I++ LWD EV+ + LH A SLSGG+++R Sbjct: 118 RIHGTKNKK---KLQEIVEKSLKDVALWD---EVK---DRLHTQA-----LSLSGGQQQR 163 Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 + + + L ++PD+LL+DEPT+ LD + +E+ + + +++VTH+ Sbjct: 164 LCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213 Score = 39.9 bits (93), Expect = 0.002 Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 48/236 (20%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML------------T 364 V + G++ Y + N++ +P + +IGP+G GK+T + L T Sbjct: 12 VYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLT 71 Query: 365 GDESPDSGTIHVGETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVK 410 G+ + + I G+ D +E K +++++++ G I Sbjct: 72 GEMNYNGSNILKGKV----------DLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHG 121 Query: 411 L-NGHEINSRAYCSAFNFKGGDQ-----QQRIGSLSGGQRGRVHLAKILKSGGNVILLDE 464 N ++ S + D+ + SLSGGQ+ R+ +A+ L + +V+L+DE Sbjct: 122 TKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDE 181 Query: 465 PTNDLDTETLSALEDAL----ENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEW 516 PT+ LD + +E+ + E + VI++H+ R++ F VE Sbjct: 182 PTSALDPVSTRKIEELILKLKEKYT--IVIVTHNMQQAARVSDQTAFFYMGELVEC 235 >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. Length = 571 Score = 71.7 bits (176), Expect = 4e-13 Identities = 51/190 (26%), Positives = 83/190 (43%), Gaps = 32/190 (16%) Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +E + ++ Y DR +D++S + PG V ++G +G+GK+TL ++ PDSG I Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI- 389 Query: 376 VGETVCLSYV---DQSRDSLEAE------------KTVWEDI--SGGDDIVKLNGHEINS 418 L D + SL + T+ +I + + + Sbjct: 390 -----LLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALA 444 Query: 419 RAYCSAF--NFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 AY F G IG LSGGQR R+ +A+ L +++LDE T+ LD E Sbjct: 445 AAYAQDFVDKLPLGLDTP-IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 Query: 473 TLSALEDALE 482 + ++ ALE Sbjct: 504 SERLVQAALE 513 Score = 50.1 bits (120), Expect = 1e-06 Identities = 48/189 (25%), Positives = 77/189 (40%), Gaps = 43/189 (22%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI-------------MAGIDKEYNGEAW 64 + LD I+L P + ++G +G+GKST++ + + G D A Sbjct: 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLAS 403 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE--EIAKL 122 L V + Q+ L + T+ NI Y + E A Sbjct: 404 LRR--QVALVSQDVVL-FNDTIANNI------------AYGRTEQADRAEIERALAAAYA 448 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 QD +D L L+T + G N LSGG+++R+A+ + LL +L+LDE Sbjct: 449 QDFVDKLPL-GLDTPI------------GENGVLLSGGQRQRLAIARALLKDAPILILDE 495 Query: 183 PTNHLDAET 191 T+ LD E+ Sbjct: 496 ATSALDNES 504 >gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. Length = 253 Score = 71.8 bits (176), Expect = 5e-13 Identities = 62/220 (28%), Positives = 95/220 (43%), Gaps = 48/220 (21%) Query: 322 GISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC 381 G+SKSY ++SF L PG ++G++G +G+GK+TL L G +PD GT Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTAT------ 61 Query: 382 LSYVDQSRDSL------EAE-----KTVW------------EDISGGDDIVKL-----NG 413 Y+ +S L EAE +T W +S G +I + Sbjct: 62 --YIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR 119 Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSL----SGGQRGRVHLAKILKSGGNVILLDEPTNDL 469 H N RA + + RI L SGG + R+ +A+ L + ++ +DEPT L Sbjct: 120 HYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGL 179 Query: 470 DTETLSALEDALE----NFAGCAVIISHD----RMFLDRL 501 D + L D L + +I++HD R+ RL Sbjct: 180 DVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRL 219 Score = 61.4 bits (149), Expect = 6e-10 Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 27/215 (12%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA--TG 68 GLSK +G K D++ YP +GI+G +G+GKST+L +AG +G A +G Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67 Query: 69 FTVGY--LPQEPQLDLSKT----VKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122 + L + + L +T V +N +G+ + + E +M + I Sbjct: 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAA 127 Query: 123 QDIIDSKGLWDLETEVQVA-IESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 W E E+ I+ L + SGG ++R+ + + L++ P L+ +D Sbjct: 128 A------HDWLEEVEIDPTRIDDLP--------RAFSGGMQQRLQIARNLVTRPRLVFMD 173 Query: 182 EPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 EPT LD A + + +R+ AV++VTHD Sbjct: 174 EPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208 >gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional. Length = 241 Score = 71.4 bits (175), Expect = 5e-13 Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 17/191 (8%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 IE K +S S + ++ ++S K G I ++GP+GAGK+TL +++ P G+I + Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63 Query: 378 ETVCLSY-VDQSRDSLEA--------EKTVWEDISGGDDIVKLNGHE-INSRAYCSAFNF 427 + V R + E TV ++I G L G + ++ Y S Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGP---MLKGEKNVDVEYYLSIVGL 120 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---TETLSALEDALENF 484 + + +LSGG+ RV +A+ L + V+LLDEPT+ LD TE + L L+N Sbjct: 121 NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNK 180 Query: 485 AGCAVI-ISHD 494 VI I+H+ Sbjct: 181 MNLTVIWITHN 191 Score = 65.2 bits (159), Expect = 4e-11 Identities = 56/239 (23%), Positives = 109/239 (45%), Gaps = 48/239 (20%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-----------DKEYNGEAWLAT 67 K++L DI++ F A I+GP+GAGKST+++++ + + + Sbjct: 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDL 75 Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 +G + Q+P L TVK+NI Y ++ Sbjct: 76 RRKIGMVFQQPHL-FEGTVKDNI------------EYGPML------------------- 103 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 KG +++ E ++I L+ ++ +LSGGE +RV++ + L ++P++LLLDEPT+ L Sbjct: 104 -KGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 Query: 188 DAETIAWMEKY---LREYSG-AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYL 242 D + +E+ L+ V+ +TH+ + ++ +++G + Y Y + Sbjct: 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221 >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. Length = 230 Score = 71.3 bits (175), Expect = 5e-13 Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 47/206 (22%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81 L +NL+ I ++G +G GKST+L +++G+ + +G L G EP D Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILE-----GKQITEPGPD 55 Query: 82 LS-----------KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130 TV+ENI V + ++ + S+ I +++ I G Sbjct: 56 RMVVFQNYSLLPWLTVRENIALAV----------DRVLPDLSKSERRAI--VEEHIALVG 103 Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 L E+ LSGG K+RVA+ + L P +LLLDEP LDA Sbjct: 104 L----------TEAADKR-----PGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 Query: 191 TIAWMEKYL----REYSGAVLMVTHD 212 T +++ L E+ VLMVTHD Sbjct: 149 TRGNLQEELMQIWEEHRVTVLMVTHD 174 Score = 60.6 bits (147), Expect = 1e-09 Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 12/174 (6%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQ---- 387 + ++ + G + +IG +G GK+TL +++G P SG + + G+ + D+ Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60 Query: 388 SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS---AFNFKGGDQQQRIGSLSGGQR 444 SL TV E+I+ D V + + RA A +R G LSGG + Sbjct: 61 QNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMK 120 Query: 445 GRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AGC-AVIISHD 494 RV +A+ L V+LLDEP LD T L++ L ++++HD Sbjct: 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174 >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional. Length = 246 Score = 71.2 bits (174), Expect = 7e-13 Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 40/223 (17%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI-------MAGID-- 56 I L+ +G K+ L DIN+ + ++G +G GKST LR +A ID Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61 Query: 57 -----KEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNY 111 K+ + +A VG + Q+P + K++ ENI Y + Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNV-FVKSIYENI------------SYAPKLHGM 108 Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 + +EE A + D + GL++ EV+ ++ N +LSGG+++R+ + + L Sbjct: 109 IKNKDEEEALVVDCLQKVGLFE---EVKDKLKQ--------NALALSGGQQQRLCIARAL 157 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 P LLLLDEPT+ LD + +E+ L+E S +++MVTH+ Sbjct: 158 AIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200 Score = 46.2 bits (109), Expect = 2e-05 Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 3/109 (2%) Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVI 490 +Q +LSGGQ+ R+ +A+ L ++LLDEPT+ LD + +E+ L+ + ++ Sbjct: 137 KQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIM 196 Query: 491 ISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA 539 ++H+ R+A + F +E+ E E +E K ++ LSGA Sbjct: 197 VTHNMQQGKRVADYTAFFHLGELIEFGESK-EFFENPKQEKTKAYLSGA 244 >gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 70.9 bits (174), Expect = 9e-13 Identities = 63/195 (32%), Positives = 91/195 (46%), Gaps = 18/195 (9%) Query: 317 VIEAKGISKSYND-RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IE + + Y D + LS +P G ++GPNGAGK+TL L G P G + Sbjct: 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63 Query: 376 V-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 V G V + V Q D TVW+D++ G + L+ E+ R + Sbjct: 64 VMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEAL 123 Query: 425 FNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD---TETLSALEDA 480 + D + + LS GQ+ RV +A +L +VI+LDEP LD ETL + D Sbjct: 124 KAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183 Query: 481 LENFAGCAVIIS-HD 494 L N G VI++ HD Sbjct: 184 LHN-QGKTVIVATHD 197 Score = 59.8 bits (145), Expect = 2e-09 Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 53/221 (23%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG-------------EAWLA 66 K L ++LS +K +LGPNGAGKST+L + GI G E W+ Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVR 78 Query: 67 TGFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 + VG + Q+P Q+ S TV +++ G +N +E ++++ Sbjct: 79 S--KVGLVFQDPDDQV-FSSTVWDDVAFGP--------------VNMGLDKDEVERRVEE 121 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 + + +WD P LS G+K+RVA+ +L PD+++LDEP Sbjct: 122 ALKAVRMWDFR----------DKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 Query: 185 NHLD---AETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNW 222 +LD ET+ + L V++ THD +D W Sbjct: 167 AYLDPRGQETLMEILDRLHNQGKTVIVATHD---VDLAAEW 204 >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed. Length = 240 Score = 70.5 bits (173), Expect = 1e-12 Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 54/239 (22%) Query: 13 SKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV- 71 SK FG +VL +I+L+ + I+GP+G+GKST+LR + +++ +G+ + G V Sbjct: 8 SKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL-IVDGLKVN 66 Query: 72 -------------GYLPQE----PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 G + Q+ P L T EN++ G + S++ Sbjct: 67 DPKVDERLIRQEAGMVFQQFYLFPHL----TALENVMFGPLRVRGA-----------SKE 111 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 E+ A+ +L +V +A + H P++ LSGG+++RVA+ + L Sbjct: 112 EAEKQAR-----------ELLAKVGLAERAHHYPSE------LSGGQQQRVAIARALAVK 154 Query: 175 PDLLLLDEPTNHLDAE---TIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 P L+L DEPT+ LD E + + + L E +++VTH+ F + V + ++ +D+G+ Sbjct: 155 PKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGR 213 Score = 64.0 bits (156), Expect = 1e-10 Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 24/218 (11%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +IE K +SK + ++ N+ + G +V +IGP+G+GK+TL R + E SG + V Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60 Query: 377 -GETVCLSYVDQSRDSLEA-----------EKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 G V VD+ EA T E++ G V+ E + Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKE-EAEKQARE 119 Query: 425 FNFKGGDQQQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSA 476 K G +R LSGGQ+ RV +A+ L ++L DEPT+ LD E L Sbjct: 120 LLAKVG-LAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178 Query: 477 LEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHV 514 ++D L VI++H+ F +++A+ ++ F G + Sbjct: 179 MQD-LAEEGMTMVIVTHEIGFAEKVASRLI-FIDKGRI 214 >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 70.0 bits (171), Expect = 2e-12 Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 17/235 (7%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 I + S +G KK + ++ + + + I+GP+G GK+T+LR + ++ G Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62 Query: 66 ATGFTVGYLPQEPQLDLS---KTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122 + G +PQLD++ K V + +I D + K++ ++ ++ Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122 Query: 123 -QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 ++ + LWD EV+ L+ P T LSGG+++R+ + + L P+++LLD Sbjct: 123 VEESLKKAALWD---EVK---SELNKPG-----TRLSGGQQQRLCIARALAVEPEVILLD 171 Query: 182 EPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPY 234 EPT+ LD +EK L E S +++VTH+ + ++I + RG+ I Y Sbjct: 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEY 226 Score = 60.7 bits (147), Expect = 9e-10 Identities = 65/262 (24%), Positives = 111/262 (42%), Gaps = 57/262 (21%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371 +IE + S Y ++ + N++ K+ I +IGP+G GKTTL R + D P Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62 Query: 372 GTIHV-GETVCLSYVD----QSRDSLEAEK------TVWEDISGG------------DDI 408 G I+ G+ + +D + + + +K +++++++ G D I Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122 Query: 409 VKLN----------GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGN 458 V+ + E+N LSGGQ+ R+ +A+ L Sbjct: 123 VEESLKKAALWDEVKSELNKPGT----------------RLSGGQQQRLCIARALAVEPE 166 Query: 459 VILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEW 516 VILLDEPT+ LD +E LE + VI++H+ R+A +I AF G + Sbjct: 167 VILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYI-AFMYRGELIE 225 Query: 517 FEGNFEEYEKDKLSRSSRVLSG 538 + E E+ K + L+G Sbjct: 226 YGPTREIVERPKNKLTEEYLTG 247 >gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei. Length = 659 Score = 69.4 bits (170), Expect = 2e-12 Identities = 56/198 (28%), Positives = 95/198 (47%), Gaps = 28/198 (14%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96 I GPNG GKS++ RI+ + Y G + Y+PQ P + L T+++ II + Sbjct: 483 ICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTL-GTLRDQII----Y 537 Query: 97 KQAILDRYNELMMNYSEKTEEEI---AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN 153 + D S+K E+I +L I++ +G W A+ D ++ Sbjct: 538 PDSSEDMK---RRGLSDKDLEQILDNVQLTHILEREGGWS-------AV------QDWMD 581 Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDR 213 + LSGGEK+R+A+ +L P +LDE T+ + + +M + RE+ + V+H R Sbjct: 582 V--LSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH-R 638 Query: 214 YFLDNVTNWILEVDRGKG 231 L ++L +D G+G Sbjct: 639 KSLWKYHEYLLYMD-GRG 655 Score = 50.9 bits (122), Expect = 9e-07 Identities = 48/199 (24%), Positives = 88/199 (44%), Gaps = 20/199 (10%) Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ 387 N +LI++LSF++P G + + GPNG GK++LFR+L G + L YV Q Sbjct: 463 NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQ 522 Query: 388 ----SRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGS----- 438 + +L ++ ++ D S +D+ + + + N + +R G Sbjct: 523 RPYMTLGTLR-DQIIYPDSS--EDMKRRGLSDKDLEQILD--NVQLTHILEREGGWSAVQ 577 Query: 439 -----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISH 493 LSGG++ R+ +A++ +LDE T+ + + + F +SH Sbjct: 578 DWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSH 637 Query: 494 DRMFLDRLATHILAFEGNG 512 R L + ++L +G G Sbjct: 638 -RKSLWKYHEYLLYMDGRG 655 >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 Score = 69.3 bits (170), Expect = 2e-12 Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 44/228 (19%) Query: 318 IEAKGISKSY-----NDRLL--IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 +E + +SK++ L + N+S + G V + GP+GAGK+TL + L + PD Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61 Query: 371 SGTI---HVGETV----------------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKL 411 SG I H G V + YV Q + + ++ + + Sbjct: 62 SGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSAL--EVVAEPLLERG 119 Query: 412 NGHEI---NSRAYCSAFNFKGGDQQQRIGSL-----SGGQRGRVHLAKILKSGGNVILLD 463 E +R + N +R+ L SGG++ RV++A+ + ++LLD Sbjct: 120 VPREAARARARELLARLNIP-----ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLD 174 Query: 464 EPTNDLDTETLSALEDALENF--AGCAVI-ISHDRMFLDRLATHILAF 508 EPT LD + + + G A+I I HD + +A ++ Sbjct: 175 EPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 Score = 67.8 bits (166), Expect = 6e-12 Identities = 66/256 (25%), Positives = 109/256 (42%), Gaps = 73/256 (28%) Query: 8 HMAGLSKVF-----GSKK--VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 + LSK F G + VL +++L+ + + GP+GAGKST+L+ + + Sbjct: 3 EVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDS 62 Query: 61 G-------EAW--LATG----------FTVGY-------LPQEPQLDLSKTVKENIIE-G 93 G AW LA T+GY +P+ L++ V E ++E G Sbjct: 63 GRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEV---VAEPLLERG 119 Query: 94 VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLN 153 V + A + E +A+L I + LW L PA Sbjct: 120 VPREAA------------RARARELLARLN--IPER-LWHLP------------PA---- 148 Query: 154 ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE--YSGAVLM-VT 210 + SGGE++RV + + ++ +LLLDEPT LDA + + + E GA L+ + Sbjct: 149 --TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIF 206 Query: 211 HDRYFLDNVTNWILEV 226 HD + V + +++V Sbjct: 207 HDEEVRELVADRVMDV 222 >gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. Length = 694 Score = 69.4 bits (170), Expect = 2e-12 Identities = 52/210 (24%), Positives = 101/210 (48%), Gaps = 22/210 (10%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS--- 388 ++ NL+ + PG +G++GP+G+GK+TL ++L +P G + V V L+ D + Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG-VDLAIADPAWLR 530 Query: 389 -------RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF-----KGGDQQ--Q 434 ++++ +++ ++I+ + H I++ A +F +G + + + Sbjct: 531 RQMGVVLQENVLFSRSIRDNIALCNPGAPFE-HVIHAAKLAGAHDFISELPQGYNTEVGE 589 Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISH 493 + +LSGGQR R+ +A+ L +++ DE T+ LD E+ + + + G VII Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIA 649 Query: 494 DRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 R+ R I+ E E G EE Sbjct: 650 HRLSTVRACDRIIVLEKGQIAE--SGRHEE 677 Score = 67.5 bits (165), Expect = 1e-11 Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 66/254 (25%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GIDKEYNGEAW 64 S +VL ++NL P IGI+GP+G+GKST+ +++ G+D AW Sbjct: 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAW 528 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENI--------IEGVAHKQAI---LDRYNELMMNYSE 113 L +G + QE L S+++++NI E V H + D +EL Y Sbjct: 529 LRR--QMGVVLQENVL-FSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGY-- 583 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLS 173 + KG +LSGG+++R+A+ + L+ Sbjct: 584 ---------NTEVGEKG------------------------ANLSGGQRQRIAIARALVG 610 Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKG 231 +P +L+ DE T+ LD E+ A + + +RE V+++ H + I+ +++G+ Sbjct: 611 NPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDR-IIVLEKGQ- 668 Query: 232 IPYQGNYSAYLQMK 245 I G + L ++ Sbjct: 669 IAESGRHEELLALQ 682 >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional. Length = 232 Score = 69.2 bits (170), Expect = 2e-12 Identities = 59/199 (29%), Positives = 89/199 (44%), Gaps = 42/199 (21%) Query: 26 NLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG---------FTVGYLPQ 76 +L+ ++ ILGP+GAGKST+L ++AG +G L V L Q Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136 E L TV +NI G+ L +N +++ KL I G+ DL Sbjct: 79 ENNLFSHLTVAQNIGLGLNPG---------LKLNAAQR-----EKLHAIARQMGIEDL-- 122 Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETI 192 + L P LSGG+++RVAL + L+ +LLLDEP + LD E + Sbjct: 123 -----LARL--PGQ------LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML 169 Query: 193 AWMEKYLREYSGAVLMVTH 211 + + +E +LMV+H Sbjct: 170 TLVSQVCQERQLTLLMVSH 188 Score = 56.5 bits (137), Expect = 2e-08 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 31/163 (19%) Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR------- 389 + G V ++GP+GAGK+TL ++ G +P SG++ + + R Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 Query: 390 -DSLEAEKTVWEDIS-GGDDIVKLNG------HEINSRAYCSAFNFKGGDQQQRI-GSLS 440 ++L + TV ++I G + +KLN H I + D R+ G LS Sbjct: 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------DLLARLPGQLS 131 Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 GGQR RV LA+ L ++LLDEP SAL+ AL Sbjct: 132 GGQRQRVALARCLVREQPILLLDEP--------FSALDPALRQ 166 >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. Length = 585 Score = 69.1 bits (169), Expect = 2e-12 Identities = 70/268 (26%), Positives = 132/268 (49%), Gaps = 37/268 (13%) Query: 280 KSKARIRSYEELVESAAHRH-PGNAQIIIPVGKRLGHVV--IEAKGISKSY-NDRLLIDN 335 +++A++ + +L +S R P +A L +V +E + I+ + N + + Sbjct: 301 EARAKLEDFFDLEDSVFQREEPADA-------PELPNVKGAVEFRHITFEFANSSQGVFD 353 Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL-EA 394 +SF+ G V ++GP GAGKTTL +L P G I + + + ++ V +R+SL ++ Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI-DGIDINTV--TRESLRKS 410 Query: 395 EKTVWEDISGGDDIVKLN---GHE-------INSRAYCSAFNF-----KGGDQQ--QRIG 437 TV++D + ++ N G E + +A +F G D +R Sbjct: 411 IATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGN 470 Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDR 495 LSGG+R R+ +A+ + +++LDE T+ LD ET + +++A++ II+H R Sbjct: 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAH-R 529 Query: 496 MFLDRLATHILAFEGNGHVEWFEGNFEE 523 + R A +L + +E +G+F+E Sbjct: 530 LSTVRNADLVLFLDQGRLIE--KGSFQE 555 Score = 49.5 bits (118), Expect = 2e-06 Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 38/179 (21%) Query: 26 NLSFYPDA--KIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLS 83 ++SF A + I+GP GAGK+T++ ++ + TVG + + +D++ Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILID-GIDIN 400 Query: 84 KTVKENI---IEGVAHKQAILDRY--NELMMNYSEKTEEEI------AKLQDIIDSKGLW 132 +E++ I V + +R + + T+EE+ A D I + Sbjct: 401 TVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKR-SN 459 Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191 +T V G LSGGE++R+A+ + +L + +L+LDE T+ LD ET Sbjct: 460 GYDTLV------------GERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506 >gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional. Length = 343 Score = 69.1 bits (170), Expect = 2e-12 Identities = 55/189 (29%), Positives = 85/189 (44%), Gaps = 46/189 (24%) Query: 317 VIEAKGISKSY----NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +IE K ISK + ++N+S +P G I GVIG +GAGK+TL R + E P SG Sbjct: 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG 60 Query: 373 TIHVG--ETVCLSYVD--QSRDS---------LEAEKTVWEDISGGDDIVKLNGHEINSR 419 + V + LS + ++R L + +TV+++++ ++ EI +R Sbjct: 61 RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR 120 Query: 420 ---------------AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDE 464 Y + LSGGQ+ RV +A+ L S V+L DE Sbjct: 121 VTELLELVGLSDKADRYPA--------------QLSGGQKQRVAIARALASNPKVLLCDE 166 Query: 465 PTNDLDTET 473 T+ LD T Sbjct: 167 ATSALDPAT 175 Score = 62.5 bits (153), Expect = 2e-10 Identities = 62/229 (27%), Positives = 102/229 (44%), Gaps = 63/229 (27%) Query: 11 GLSKVF--GSKKV--LDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 +SKVF G + + L++++L P +I G++G +GAGKST++R + +++ +G + Sbjct: 6 NISKVFPQGGRTIHALNNVSLHI-PAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLV 64 Query: 66 ---------ATGFT-----VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNE 106 +G + Q L S+TV +N+ + G K I R E Sbjct: 65 DGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTP-KAEIKARVTE 123 Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVA 166 L+ E+ L D D PA LSGG+K+RVA Sbjct: 124 LL---------ELVGLSDKADRY------------------PA------QLSGGQKQRVA 150 Query: 167 LCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTH 211 + + L S+P +LL DE T+ LD T + + L RE ++++TH Sbjct: 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITH 199 >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional. Length = 262 Score = 69.3 bits (169), Expect = 2e-12 Identities = 65/252 (25%), Positives = 111/252 (44%), Gaps = 35/252 (13%) Query: 315 HVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR----MLTGDESPD 370 +I + ++K++N + + + G +V ++GP+G+GK+TL R ++TGD+S Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAG 61 Query: 371 SGTIHVGETV-----CLSYVDQSRD---------SLEAEKTVWEDISGG--------DDI 408 S +G TV + +SR +L +V E++ G Sbjct: 62 SHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTC 121 Query: 409 VKLNGHEINSRAYCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 E RA A G QR+ +LSGGQ+ RV +A+ L VIL DEP Sbjct: 122 FSWFTREQKQRAL-QALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPI 180 Query: 467 NDLDTET----LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFE 522 LD E+ + L D +N V+ H + R I+A GHV +++G+ + Sbjct: 181 ASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALR-QGHV-FYDGSSQ 238 Query: 523 EYEKDKLSRSSR 534 +++ ++ R Sbjct: 239 QFDNERFDHLYR 250 Score = 52.7 bits (126), Expect = 2e-07 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 41/220 (18%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 L+K F + L ++L+ + + +LGP+G+GKST+LR ++G L TG Sbjct: 10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSG----------LITGDKS 59 Query: 72 GYLPQEPQLDLSKTVK------ENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 L +TV+ +I + A+ I ++N ++N E L Sbjct: 60 ---AGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN--LVNRLSVLEN---VLIGA 111 Query: 126 IDSKGLWDL------ETEVQVAIESL------HCPADGLNITSLSGGEKRRVALCKLLLS 173 + S W + Q A+++L H +++LSGG+++RVA+ + L+ Sbjct: 112 LGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ--RVSTLSGGQQQRVAIARALMQ 169 Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYS---GAVLMVT 210 ++L DEP LD E+ + LR+ + G ++VT Sbjct: 170 QAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional. Length = 225 Score = 68.6 bits (168), Expect = 3e-12 Identities = 61/215 (28%), Positives = 89/215 (41%), Gaps = 52/215 (24%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-TGFT----- 70 G K+L++I+ S I GP+G GKST+L+I+A + +G + Sbjct: 18 GDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPE 77 Query: 71 -----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 V Y Q P L TV +N+I + + A D Sbjct: 78 IYRQQVSYCAQTPTL-FGDTVYDNLI---------------FPWQIRNQQPDP-AIFLDD 120 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 ++ L + NI LSGGEK+R++L + L P +LLLDE T+ Sbjct: 121 LERFAL-PDTILTK-------------NIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166 Query: 186 HLDA-------ETIAWMEKYLREYSGAVLMVTHDR 213 LD E I +Y+RE + AVL VTHD+ Sbjct: 167 ALDESNKHNVNEII---HRYVREQNIAVLWVTHDK 198 Score = 57.8 bits (140), Expect = 6e-09 Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 17/194 (8%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +++ + + D +++N+SF L G + GP+G GK+TL +++ SP SGT+ Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66 Query: 377 -GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAF 425 GE + +SY Q+ +L + TV++++ I F Sbjct: 67 EGEDISTLKPEIYRQQVSYCAQT-PTLFGD-TVYDNLIFPWQIRNQQPDPAIFLDDLERF 124 Query: 426 NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485 + I LSGG++ R+ L + L+ V+LLDE T+ LD + + + + Sbjct: 125 ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYV 184 Query: 486 ---GCAVI-ISHDR 495 AV+ ++HD+ Sbjct: 185 REQNIAVLWVTHDK 198 >gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein. Length = 711 Score = 68.6 bits (168), Expect = 4e-12 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 42/208 (20%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AG---ID----KEYNGEA 63 VL + + +P + ++GP+G+GKST+ ++ G +D +Y+ Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYD-HH 551 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 +L V + QEP L S +V+ENI G L + + + K A Sbjct: 552 YLHR--QVALVGQEPVL-FSGSVRENIAYG-------LTDTPDEEIMAAAKA----ANAH 597 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 D I + +TEV G + LSGG+K+R+A+ + L+ P +L+LDE Sbjct: 598 DFI-MEFPNGYDTEV------------GEKGSQLSGGQKQRIAIARALVRKPRVLILDEA 644 Query: 184 TNHLDAETIAWMEKYLREYSGAVLMVTH 211 T+ LDAE +++ S VL++ H Sbjct: 645 TSALDAECEQLLQESRSRASRTVLLIAH 672 Score = 67.4 bits (165), Expect = 8e-12 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 27/233 (11%) Query: 317 VIEAKGISKSY---NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 +IE + +S SY D ++ L+F L PG +V ++GP+G+GK+T+ +L P G Sbjct: 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 Query: 374 IHVGETVCLS-----YVDQSRDSLEAEKTVW-----EDISGGDDIVKLNGHEINSRA-YC 422 + + + V L Y+ + + E ++ E+I+ G EI + A Sbjct: 538 VLL-DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLT--DTPDEEIMAAAKAA 594 Query: 423 SAFNFKGGDQQ---QRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 +A +F +G LSGGQ+ R+ +A+ L V++LDE T+ LD E Sbjct: 595 NAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQ 654 Query: 476 ALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDK 528 L++ + A V++ R+ A IL + VE G ++ +D+ Sbjct: 655 LLQE-SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVE--MGTHKQLMEDQ 704 >gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional. Length = 248 Score = 68.4 bits (168), Expect = 4e-12 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 33/190 (17%) Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSY--VDQ 387 RL LS ++ G I+ ++GPNGAGK+TL + G P SG+I ++ + Sbjct: 11 RLG--PLSAEVRAGEILHLVGPNGAGKSTLLARMAG-LLPGSGSIQFAGQPLEAWSAAEL 67 Query: 388 SR--------DSLEAEKTVWE--DISGGDDIVKLNGHEINSRAY--CSAFNFKGGDQQQR 435 +R + V++ + D K + S A D+ R Sbjct: 68 ARHRAYLSQQQTPPFAMPVFQYLTLHQPD---KTRTEAVASALNEVAEALGL--DDKLGR 122 Query: 436 -IGSLSGGQRGRVHLAKI-------LKSGGNVILLDEPTNDLDTETLSALEDALENFA-- 485 + LSGG+ RV LA + + G ++LLDEP N LD +AL+ L Sbjct: 123 SVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182 Query: 486 GCAVIIS-HD 494 G AV++S HD Sbjct: 183 GIAVVMSSHD 192 Score = 67.3 bits (165), Expect = 1e-11 Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 54/198 (27%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96 ++GPNGAGKST+L MAG+ +G +P S +A Sbjct: 27 LVGPNGAGKSTLLARMAGL-LPGSGSI---------QFAGQPLEAWSAA-------ELAR 69 Query: 97 KQAIL----------DRYNELMMNYSEKTEEEIAK--LQDIIDSKGLWDLETEVQVAIES 144 +A L + L ++ +KT E L ++ ++ GL D Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDK---------- 119 Query: 145 LHCPADGLNITSLSGGEKRRVALCKLLL-----SSPD--LLLLDEPTNHLDAETIAWMEK 197 L + LSGGE +RV L ++L +P LLLLDEP N LD A +++ Sbjct: 120 LGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDR 174 Query: 198 YLREYS---GAVLMVTHD 212 L E AV+M +HD Sbjct: 175 LLSELCQQGIAVVMSSHD 192 >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional. Length = 200 Score = 68.4 bits (167), Expect = 5e-12 Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 32/194 (16%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-----HVGETVC 381 Y+D+ L+ +SF LP GG++ + G NGAGKTTL +++ G +P+ G I + + +C Sbjct: 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLC 70 Query: 382 LSYVDQ-----SRDSLEAEKTVWEDI-------SGGDDIVKLNGHEINSRAYCSAFNFKG 429 +Y Q R + T+ E+ G I +L C F+ Sbjct: 71 -TYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITEL----------CRLFSL-E 118 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF---AG 486 G LS GQ+ +V L ++ S + LLDEP LD +L + ++ G Sbjct: 119 HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178 Query: 487 CAVIISHDRMFLDR 500 ++ SH + L++ Sbjct: 179 AVLLTSHQDLPLNK 192 Score = 53.0 bits (127), Expect = 2e-07 Identities = 64/219 (29%), Positives = 90/219 (41%), Gaps = 50/219 (22%) Query: 21 VLDDINLSF-YPDAKI-----------GIL---GPNGAGKSTILRIMAGIDKEYNGEAWL 65 +LD I L F Y D + G+L G NGAGK+T+L+++AG+ GE Sbjct: 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE--- 57 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAI----LDRYNELMMNYSEKTEEEIAK 121 + + Q + DL K+ V H+ I R N L + I + Sbjct: 58 -----ILFERQSIKKDLCTYQKQLCF--VGHRSGINPYLTLRENCLYDIHFSPGAVGITE 110 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 L + + L D GL LS G+KR+VAL +L +S L LLD Sbjct: 111 LCRLFSLEHLIDYPC--------------GL----LSSGQKRQVALLRLWMSKAKLWLLD 152 Query: 182 EPTNHLDA---ETIAWMEKYLREYSGAVLMVTHDRYFLD 217 EP LD TI + R GAVL+ +H L+ Sbjct: 153 EPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN 191 >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional. Length = 258 Score = 68.4 bits (168), Expect = 5e-12 Identities = 63/227 (27%), Positives = 100/227 (44%), Gaps = 58/227 (25%) Query: 320 AKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV--- 376 +G++K Y R ++SF L PG ++G++G +G+GKTTL L+ +PD+G +H Sbjct: 9 VRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMR 68 Query: 377 -GETVCL----------------SYVDQS-RDSLEAEKTVWEDISGGDDIV-KLNG---- 413 G+ L +V Q RD L + +S G +I +L Sbjct: 69 DGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQ------VSAGGNIGERLMAVGAR 122 Query: 414 HEINSRAYCSAFNFKGGDQQQRI-----------GSLSGGQRGRVHLAKILKSGGNVILL 462 H + RA GD +R+ + SGG + R+ +A+ L + ++ + Sbjct: 123 HYGDIRA-------TAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175 Query: 463 DEPTNDLDTETLSALEDALENFA---GCAVII-SHD----RMFLDRL 501 DEPT LD + L D L G AV+I +HD R+ RL Sbjct: 176 DEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRL 222 Score = 43.4 bits (103), Expect = 1e-04 Identities = 16/44 (36%), Positives = 30/44 (68%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54 GL+K++G +K D++ YP +GI+G +G+GK+T+L ++ Sbjct: 11 GLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA 54 Score = 41.1 bits (97), Expect = 7e-04 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%) Query: 155 TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR----EYSGAVLMVT 210 T+ SGG ++R+ + + L++ P L+ +DEPT LD A + LR E AV++VT Sbjct: 150 TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVT 209 Query: 211 HD 212 HD Sbjct: 210 HD 211 >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional. Length = 276 Score = 68.2 bits (166), Expect = 6e-12 Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 50/219 (22%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE-----YNGEAWLA--TG 68 F K VLD +++ F A ++GP G+GK+T LR + ++ + Y+G+ L + Sbjct: 31 FAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSI 90 Query: 69 FT----------VGYLPQEPQLDLSKTVKENIIEGV-AHKQAILDRYNELMMNYSEKTEE 117 F VG L Q P ++ +N++ GV AHK + + Sbjct: 91 FNYRDVLEFRRRVGMLFQRPN-PFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ-------- 141 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSP 175 A+L ++ GLWD A++ D L+ + LSGG+++ + L + L +P Sbjct: 142 --ARLTEV----GLWD-------AVK------DRLSDSPFRLSGGQQQLLCLARTLAVNP 182 Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 ++LLLDEPT+ LD T +E+++R + V++VTH+ Sbjct: 183 EVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHN 221 Score = 55.5 bits (133), Expect = 4e-08 Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 36/250 (14%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 + A ++ + + ++D +S P + ++GP G+GKTT R L SG + G Sbjct: 22 MAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG 81 Query: 378 ETVCLS-YVDQSRDSLEAEKTVWE--------DISGGDDIVK-LNGHEINSRAYCSAFNF 427 + + + RD LE + V +S D+++ + H++ R F Sbjct: 82 DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRK-----EF 136 Query: 428 KGGDQQQ--RIG--------------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 +G Q + +G LSGGQ+ + LA+ L V+LLDEPT+ LD Sbjct: 137 RGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDP 196 Query: 472 ETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE-YEKDK 528 T +E+ + + A +I++H+ R++ F VE EG E+ + K Sbjct: 197 TTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE--EGPTEQLFSSPK 254 Query: 529 LSRSSRVLSG 538 + ++R ++G Sbjct: 255 HAETARYVAG 264 >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional. Length = 272 Score = 68.0 bits (166), Expect = 6e-12 Identities = 56/180 (31%), Positives = 85/180 (47%), Gaps = 28/180 (15%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETV-------CLSYVD 386 + SF +P G I ++G NG+GK+TLF+ L G SG I + G+ ++YV Sbjct: 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVP 84 Query: 387 QSRDSLEAEKTVWEDISGGDDIVKLN--GH-------EINSRAYCSAFNFKGGDQQQR-- 435 QS E+ W +D+V + GH + R +A + + R Sbjct: 85 QS------EEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHR 138 Query: 436 -IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVIIS 492 IG LSGGQ+ RV LA+ + G VILLDEP +D +T + + L G +++S Sbjct: 139 QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198 Score = 46.4 bits (110), Expect = 2e-05 Identities = 50/195 (25%), Positives = 87/195 (44%), Gaps = 37/195 (18%) Query: 31 PDAKIGIL-GPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--------VGYLPQEPQLD 81 P I L G NG+GKST+ + + G + +G+ + T V Y+PQ ++D Sbjct: 31 PGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVD 90 Query: 82 LSKTVKENIIEGVAHKQAILDRYNEL-MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 S V ++E V ++ RY + + ++K + +I + + + + Sbjct: 91 WSFPV---LVEDVV----MMGRYGHMGWLRRAKKRDRQI--VTAALARVDMVEFRHR--- 138 Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200 I LSGG+K+RV L + + ++LLDEP +D +T A + LR Sbjct: 139 ------------QIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLR 186 Query: 201 EY--SGAVLMV-THD 212 E G ++V TH+ Sbjct: 187 ELRDEGKTMLVSTHN 201 >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 Score = 67.8 bits (166), Expect = 6e-12 Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 29/195 (14%) Query: 329 DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC------ 381 D+ +D L+ + PG V ++GP+GAGK+TLF++L P SG I + G + Sbjct: 352 DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAE 411 Query: 382 ----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQ---- 433 ++ V Q D + +V E+I G E +RA A F + Sbjct: 412 LRARMALVPQ--DPVLFAASVMENIRYGRPDATDEEVEAAARA-AHAHEFISALPEGYDT 468 Query: 434 ---QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CA 488 +R +LSGGQR R+ +A+ + ++LLDE T+ LD E+ ++ ALE Sbjct: 469 YLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTT 528 Query: 489 VIISHDRMFLDRLAT 503 +II+H RLAT Sbjct: 529 LIIAH------RLAT 537 Score = 61.3 bits (149), Expect = 7e-10 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 40/185 (21%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA-------------GIDKEYNGEAWLA 66 LD +NL+ P + ++GP+GAGKST+ +++ G+D A L Sbjct: 354 PALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELR 413 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 + +PQ+P L + +V ENI RY + T+EE+ Sbjct: 414 ARMAL--VPQDPVL-FAASVMENI------------RYGRP-----DATDEEVEAAARAA 453 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 + + E G +LSGG+++R+A+ + +L +LLLDE T+ Sbjct: 454 HAHEF------ISALPEGYDTYL-GERGVTLSGGQRQRIAIARAILKDAPILLLDEATSA 506 Query: 187 LDAET 191 LDAE+ Sbjct: 507 LDAES 511 >gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional. Length = 268 Score = 67.7 bits (165), Expect = 6e-12 Identities = 66/233 (28%), Positives = 108/233 (46%), Gaps = 57/233 (24%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGIDKE 58 I + LS +G K+ ++DI++ A ++GP+G GKST LR ++ E Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80 Query: 59 ----YNGEAWLATGFTV-------GYLPQEPQLDLSKTVKENIIEGVAH----KQAILDR 103 Y G L + V G + Q+P K++ NI + + ++++LD Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPN-PFPKSIYNNITHALKYAGERRKSVLD- 138 Query: 104 YNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR 163 E EE + K LWD EV+ + LH A SLSGG+++ Sbjct: 139 ---------EIVEESLTK-------AALWD---EVK---DRLHSSA-----LSLSGGQQQ 171 Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 R+ + + L P +LLLDEP + LD + A +E+ + EYS +++VTH+ Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYS--IIIVTHN 222 Score = 45.0 bits (106), Expect = 5e-05 Identities = 52/240 (21%), Positives = 94/240 (39%), Gaps = 61/240 (25%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR--------------- 361 ++E K +S Y ++ ++++S + + +IGP+G GK+T R Sbjct: 21 ILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80 Query: 362 -------------------------MLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEK 396 M+ +P +I+ T L Y + R K Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERR------K 134 Query: 397 TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456 +V ++I E+ R + SA SLSGGQ+ R+ +A+ L Sbjct: 135 SVLDEIVEESLTKAALWDEVKDRLHSSAL------------SLSGGQQQRLCIARTLAMK 182 Query: 457 GNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHV 514 V+LLDEP + LD + + +E+ + +I++H+ R++ AF NG + Sbjct: 183 PAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRT-AFFLNGDL 241 >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional. Length = 214 Score = 67.6 bits (165), Expect = 8e-12 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 13/170 (7%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ A ++ S N+ + L F + G + V G NGAGKTTL R+L G +SG I + Sbjct: 11 LLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70 Query: 377 GETVCLSYVDQSR-----DSLEAEKTVWEDISGGDDIVKLNG-HEINSRAY-CSAFNFKG 429 + + D+SR L K D+S +++ L G H ++ SA G Sbjct: 71 -DGKTATRGDRSRFMAYLGHLPGLK---ADLSTLENLHFLCGLHGRRAKQMPGSALAIVG 126 Query: 430 --GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 G + + LS GQ+ R+ LA++ S + LLDEP +LD E ++ + Sbjct: 127 LAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV 176 Score = 56.0 bits (135), Expect = 2e-08 Identities = 59/203 (29%), Positives = 82/203 (40%), Gaps = 49/203 (24%) Query: 27 LSFYPDAKIGIL--GPNGAGKSTILRIMAG----------IDKEYNGEAWLATGFTVGYL 74 L F+ DA +L G NGAGK+T+LR++AG ID + + + YL Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSR--FMAYL 87 Query: 75 PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDL 134 P L + EN+ H L M S Sbjct: 88 GHLPGLKADLSTLENL-----HFLCGLHGRRAKQMPGS---------------------- 120 Query: 135 ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAW 194 +AI L D L + LS G+K+R+AL +L LS L LLDEP +LD E I Sbjct: 121 ----ALAIVGLAGYEDTL-VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITL 175 Query: 195 MEKYLREY---SGAVLMVTHDRY 214 + + + + GA L+ TH Y Sbjct: 176 VNRMISAHLRGGGAALVTTHGAY 198 >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional. Length = 369 Score = 67.4 bits (165), Expect = 8e-12 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 21/165 (12%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGET- 379 + ++K+Y D ++ +++ + G V +GP+G GK+TL RM+ G E SG + +GE Sbjct: 7 RNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKR 66 Query: 380 -------------VCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN 426 V SY +L +V E++S G + EIN R A Sbjct: 67 MNDVPPAERGVGMVFQSY------ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV 120 Query: 427 FKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + R +LSGGQR RV + + L + +V LLDEP ++LD Sbjct: 121 LQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165 Score = 58.1 bits (141), Expect = 5e-09 Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 56/222 (25%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 ++K +G + DINL + + +GP+G GKST+LR++AG++ +G+ ++ Sbjct: 8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRM 67 Query: 67 -----TGFTVGYLPQEPQLDLSKTVKENIIEGV----AHKQAILDRYNELMMNYSEKTEE 117 VG + Q L +V EN+ G+ A K+ I R N++ Sbjct: 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV---------A 118 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 E+ +L ++D K P LSGG+++RVA+ + L++ P + Sbjct: 119 EVLQLAHLLDRK------------------PKA------LSGGQRQRVAIGRTLVAEPSV 154 Query: 178 LLLDEPTNHLDAE-------TIAWMEKYLREYSGAVLMVTHD 212 LLDEP ++LDA I+ + K L ++ VTHD Sbjct: 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGR---TMIYVTHD 193 >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional. Length = 257 Score = 67.3 bits (164), Expect = 9e-12 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 40/251 (15%) Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL 382 + K Y + ++ +S + G ++ +IG +G+GK+T R + E P G+I V Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNG---- 66 Query: 383 SYVDQSRDS---------------------------LEAEKTVWEDISGGD-DIVKLNGH 414 ++ RD L + TV E++ ++ L+ Sbjct: 67 QTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQ 126 Query: 415 EINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 E RA Y + Q + LSGGQ+ RV +A+ L V+L DEPT+ LD E Sbjct: 127 EARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE 186 Query: 473 TLSALEDALENFA---GCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEE-YEKDK 528 + + ++ A V+++H+ F +++H++ F G +E EG E+ + + Sbjct: 187 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEE-EGAPEQLFGNPQ 244 Query: 529 LSRSSRVLSGA 539 R + L G+ Sbjct: 245 SPRLQQFLKGS 255 Score = 58.1 bits (140), Expect = 5e-09 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 12/225 (5%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 L K +G +VL ++L I I+G +G+GKST LR + ++K G + Sbjct: 11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTIN 70 Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNEL--MMNYSEKTEEEIAKLQDIIDSK 129 ++ QL K +N + + + ++ ++ L M E E A +Q + SK Sbjct: 71 LVRDKDGQL---KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSK 125 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 +A + A G LSGG+++RV++ + L P++LL DEPT+ LD Sbjct: 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDP 185 Query: 190 ETIA----WMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 E + M++ L E +++VTH+ F +V++ ++ + +GK Sbjct: 186 ELVGEVLRIMQQ-LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 67.3 bits (164), Expect = 1e-11 Identities = 56/219 (25%), Positives = 103/219 (47%), Gaps = 44/219 (20%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------------------IMAGIDK 57 +G K+ + ++NL ++GP+G GK+T LR ++ G D Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73 Query: 58 EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 +A VG + Q+P + +V +N++ G+ I DR + +M +E++ Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGL-KLAGIRDR--DHLMEVAERS-- 128 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 + LWD EV+ + L PA GL SGG+++R+ + + L P++ Sbjct: 129 --------LRGAALWD---EVK---DRLKTPATGL-----SGGQQQRLCIARALAVEPEI 169 Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRY 214 LL+DEPT+ LD + A +E + + +++VTH+ + Sbjct: 170 LLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208 Score = 52.7 bits (126), Expect = 2e-07 Identities = 51/203 (25%), Positives = 99/203 (48%), Gaps = 33/203 (16%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371 ++ A+ ++ Y D+ + N++ + G + +IGP+G GKTT R + D +P + Sbjct: 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63 Query: 372 GTIHV-GETVCLSYVD----QSRDSLEAEK-------TVWEDISGGDDIVKLNG------ 413 G I + G+ + VD + R + +K +V++++ G +KL G Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAG---LKLAGIRDRDH 120 Query: 414 -HEINSRAYCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTND 468 E+ R+ A + + + R+ + LSGGQ+ R+ +A+ L ++L+DEPT+ Sbjct: 121 LMEVAERSLRGAALWD--EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSA 178 Query: 469 LDTETLSALEDALENFAGCAVII 491 LD + + +ED + + II Sbjct: 179 LDPASTARIEDLMTDLKKVTTII 201 >gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 67.3 bits (165), Expect = 1e-11 Identities = 50/169 (29%), Positives = 85/169 (50%), Gaps = 14/169 (8%) Query: 316 VVIEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 V+I+ + +S SY + + N+SF++ G V ++G NG+GK+T+ ++LTG P SG Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65 Query: 374 IHV-GETVCLSYVDQSR----------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422 I + G T+ + + R D+ TV +DI+ G + K+ ++ Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDD 125 Query: 423 SAFNFKGGDQQQR-IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 A D + +LSGGQ+ RV +A +L +I+ DE T+ LD Sbjct: 126 LAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLD 174 Score = 55.0 bits (133), Expect = 5e-08 Identities = 55/215 (25%), Positives = 95/215 (44%), Gaps = 53/215 (24%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT------- 70 L +++ + ILG NG+GKSTI +I+ G+ K +GE + G T Sbjct: 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI-DGITISKENLK 79 Query: 71 -----VGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 +G + Q P Q + TV+++I G+ +K+ + K++ Sbjct: 80 EIRKKIGIIFQNPDNQF-IGATVEDDIAFGLENKK--VPP----------------KKMK 120 Query: 124 DIIDSKGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 DIID + +V +E P +LSGG+K+RVA+ +L +P++++ D Sbjct: 121 DIID-------DLAKKVGMEDYLDKEP------QNLSGGQKQRVAIASVLALNPEIIIFD 167 Query: 182 EPTNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212 E T+ LD E M + ++ +THD Sbjct: 168 ESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHD 202 >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 Score = 67.2 bits (164), Expect = 1e-11 Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 24/222 (10%) Query: 317 VIEAKGISKSYN--DRLL--IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +I+ I+K ++ + + ++N+S +P G I GVIG +GAGK+TL R + E P SG Sbjct: 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG 60 Query: 373 TIHVG--ETVCLSYVDQSRD-----------SLEAEKTVWEDISGGDDIVKLNGHEINSR 419 ++ V + LS + ++ +L + +TV+ +++ ++ EI + Sbjct: 61 SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK 120 Query: 420 AYCSAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---- 473 G GD+ S LSGGQ+ RV +A+ L S V+L DE T+ LD T Sbjct: 121 V-TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSI 179 Query: 474 LSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 L L++ ++I+H+ + R+ + +E Sbjct: 180 LELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE 221 Score = 63.7 bits (155), Expect = 1e-10 Identities = 69/269 (25%), Positives = 119/269 (44%), Gaps = 64/269 (23%) Query: 12 LSKVF--GSKKV--LDDINLSFYPDAKI-GILGPNGAGKSTILR-------------IMA 53 ++KVF G+K + L++++L P +I G++G +GAGKST++R I+ Sbjct: 7 ITKVFHQGTKTIQALNNVSL-HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVD 65 Query: 54 GIDKEYNGEAWL-ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNEL 107 G D + L +G + Q L S+TV N+ ++ K I + EL Sbjct: 66 GQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTP-KDEIKRKVTEL 124 Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167 + + L D DS P++ LSGG+K+RVA+ Sbjct: 125 L---------ALVGLGDKHDSY------------------PSN------LSGGQKQRVAI 151 Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG----AVLMVTHDRYFLDNVTNWI 223 + L S+P +LL DE T+ LD T + + L+E + +L++TH+ + + + + Sbjct: 152 ARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211 Query: 224 LEVDRGKGIPYQGNYSAYLQMKAKRMAQE 252 + G+ I QG S +AQ+ Sbjct: 212 AVISNGELIE-QGTVSEIFSHPKTPLAQK 239 >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). Length = 325 Score = 66.7 bits (163), Expect = 1e-11 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 23/139 (16%) Query: 348 VIGPNGAGKTTLFRMLTGDESPDSGTIHVGE--------------TVCLSYVDQSRDSLE 393 ++GP+G GKTTL R+L G E PDSG+I + V SY +L Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSY------ALF 54 Query: 394 AEKTVWEDISGGDDIVKLNGHEINSR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK 451 TV E+++ G + K+ EI R ++ LSGGQ+ RV LA+ Sbjct: 55 PHMTVEENVAFGLKMRKVPRAEIKPRVLEALRLVQL-EEFADRKPHQLSGGQQQRVALAR 113 Query: 452 ILKSGGNVILLDEPTNDLD 470 L ++LLDEP + LD Sbjct: 114 ALVFKPKILLLDEPLSALD 132 Score = 63.7 bits (155), Expect = 1e-10 Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 40/189 (21%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96 +LGP+G GK+T+LR++AG ++ P + L E++ H Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQ-----------------PDSGSIMLDG---EDVTNVPPH 40 Query: 97 KQAILDRYNELMMNYS----EKTEEEIA---KLQDIIDSKGLWDLETEVQVAIESLHCPA 149 + I N + +Y+ EE +A K++ + + +++ V A+ + Sbjct: 41 LRHI----NMVFQSYALFPHMTVEENVAFGLKMRKVPRA----EIKPRVLEALRLVQLEE 92 Query: 150 DGLN-ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSG 204 LSGG+++RVAL + L+ P +LLLDEP + LD + M+ L + Sbjct: 93 FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 Query: 205 AVLMVTHDR 213 + VTHD+ Sbjct: 153 TFVFVTHDQ 161 >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional. Length = 255 Score = 66.6 bits (163), Expect = 1e-11 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 53/219 (24%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 L +G K L+DINL+ + +LGP+G GK+T+L ++AG +G L Sbjct: 6 HLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65 Query: 67 --TGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYSEKTEEEI 119 G G + Q L + V++N+ + GV Q + ++ Sbjct: 66 EGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQ-------------RLEIAHQM 112 Query: 120 AKLQDII--DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 K + + + +W L SGG+++RV + + L ++P L Sbjct: 113 LKKVGLEGAEKRYIWQL-----------------------SGGQRQRVGIARALAANPQL 149 Query: 178 LLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 LLLDEP LDA T M+ L +E VL++THD Sbjct: 150 LLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188 Score = 64.7 bits (158), Expect = 6e-11 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 26/172 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 ++ + Y + +++++ L G ++ V+GP+G GKTTL ++ G G+I + Sbjct: 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61 Query: 378 ETVCLSYVDQSRDSLEAEKTV---------WEDISGGDDI---VKLNGHEINSRAYCSAF 425 + + AE+ V W ++ D++ ++L G E R + Sbjct: 62 G--------KPVEGPGAERGVVFQNEGLLPWRNVQ--DNVAFGLQLAGVEKMQRLEIAHQ 111 Query: 426 NFK----GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 K G +++ I LSGGQR RV +A+ L + ++LLDEP LD T Sbjct: 112 MLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFT 163 >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 67.0 bits (164), Expect = 1e-11 Identities = 59/204 (28%), Positives = 97/204 (47%), Gaps = 34/204 (16%) Query: 317 VIEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +I + IS Y + ++SF + G V ++G NG+GK+TL ++L G P++GTI Sbjct: 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64 Query: 375 HVG------ETVC-----LSYVDQSRDSLEAEKTVWEDISGG--------DDIVKLNGHE 415 VG ETV + V Q+ D+ TV +D++ G +++V+ + Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVE-RVDQ 123 Query: 416 INSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----T 471 + F + LSGGQ+ RV +A +L ++I+LDE T+ LD Sbjct: 124 ALRQVGMEDF------LNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177 Query: 472 ETLSALEDALENFAGCAVI-ISHD 494 E L + L+ G V+ I+HD Sbjct: 178 EVLETVRQ-LKEQKGITVLSITHD 200 Score = 48.9 bits (117), Expect = 4e-06 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTH 211 LSGG+K+RVA+ +L PD+++LDE T+ LD E + + + + VL +TH Sbjct: 140 RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199 Query: 212 D 212 D Sbjct: 200 D 200 Score = 32.3 bits (74), Expect = 0.36 Identities = 13/38 (34%), Positives = 24/38 (63%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI 55 + L D++ S Y + I+G NG+GKST+ +++ G+ Sbjct: 19 ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL 56 >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional. Length = 305 Score = 66.6 bits (163), Expect = 1e-11 Identities = 64/234 (27%), Positives = 105/234 (44%), Gaps = 33/234 (14%) Query: 12 LSKVFGSK-----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYN 60 + K+F K K LD++++ I I+G G+GK+T + + + E+ Sbjct: 8 IVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWI 67 Query: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENI--IEGVAHKQAILDRYNELMMNYSEKTEEE 118 + T +L + KT + I I+ + + ++ ++ E + E+ Sbjct: 68 FKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-----FEQT 122 Query: 119 IAKLQDII---DSKGLWDLETEVQVA--IESLHCPADGLNIT--SLSGGEKRRVALCKLL 171 I K DII S G+ E + + A IE + L + LSGG+KRRVAL +L Sbjct: 123 IEK--DIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SG-AVLMVTHDRYFLDNVTNW 222 PD L+ DEPT LD + + + + G +++VTHD LDNV W Sbjct: 181 AMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD---LDNVLEW 231 Score = 49.7 bits (119), Expect = 2e-06 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Query: 318 IEAKGISKSYNDRL-----LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 I+ K I K +N +L +DN+S ++ G + +IG G+GKTT L PD+G Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62 Query: 373 TI 374 TI Sbjct: 63 TI 64 Score = 40.5 bits (95), Expect = 0.001 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVII-SHD 494 LSGGQ+ RV LA IL + ++ DEPT LD + + + + +N G +I+ +HD Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional. Length = 257 Score = 66.2 bits (161), Expect = 2e-11 Identities = 60/229 (26%), Positives = 119/229 (51%), Gaps = 27/229 (11%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 +++++ L K +L DI + ++ GI+GP+G+GKST+L+++ + + Y+ + + Sbjct: 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSK--I 67 Query: 66 ATGFTVGYLPQEP-QLDLSKTVKENIIEGVAHKQ-------AILDRYNELMMNYSEKTEE 117 V Y ++ Q+D K KE G+ +Q +I D + ++ K + Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKE---VGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKR 124 Query: 118 EIAKL-QDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 EI K+ ++ + GLW EV + L+ PA + LSGG+++R+ + + L P Sbjct: 125 EIKKIVEECLRKVGLW---KEVY---DRLNSPA-----SQLSGGQQQRLTIARALALKPK 173 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWI 223 +LL+DEPT+ +D +EK + E A+++V+H+ + V +++ Sbjct: 174 VLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYV 222 Score = 58.1 bits (140), Expect = 6e-09 Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 29/226 (12%) Query: 323 ISKSY---NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGET 379 IS+ Y ND+ ++ +++ K+P I G++GP+G+GK+TL ++L I V Sbjct: 13 ISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK 72 Query: 380 VCLSYVDQSR-DSLEAEKTV---------WEDISGGDDIV-KLNGHEINSRAYCSAFNFK 428 V D + D+++ K V + +S D+I L H I + + Sbjct: 73 VLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEE 132 Query: 429 G-------GDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 + R+ S LSGGQ+ R+ +A+ L V+L+DEPT+ +D A+ Sbjct: 133 CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAI 192 Query: 478 EDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGH-VEWFEGN 520 E + VI+SH+ + R+A ++ AF NG VEW N Sbjct: 193 EKLITELKNEIAIVIVSHNPQQVARVADYV-AFLYNGELVEWGSSN 237 >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 66.0 bits (161), Expect = 2e-11 Identities = 67/239 (28%), Positives = 108/239 (45%), Gaps = 59/239 (24%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI----- 55 M + I L+ +G K L DI +S + ++GP+G GKST+LR + Sbjct: 1 MTMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60 Query: 56 ------DKEYNGEAWLATGFTV-------GYLPQEPQLDLSKTVKENI-----IEGVAHK 97 D YNGE + +G V G + Q P K++ EN+ I G +K Sbjct: 61 GCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN-PFPKSIYENVAYGPRIHGEKNK 119 Query: 98 QAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSL 157 + LD E + + LWD EV+ + LH A SL Sbjct: 120 KT-LDTIVEKSLKGA-----------------ALWD---EVK---DRLHDSA-----LSL 150 Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 SGG+++R+ + + L +P+++L+DEP + LD A +E + +EY+ V++VTH+ Sbjct: 151 SGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYT--VIIVTHN 207 Score = 59.8 bits (145), Expect = 2e-09 Identities = 52/219 (23%), Positives = 96/219 (43%), Gaps = 52/219 (23%) Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR------------ 361 +++ K ++ Y ++ + +++ +P + +IGP+G GK+TL R Sbjct: 3 MEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGC 62 Query: 362 MLTGDESPDSGTIH--VGETVCL----SYVDQSRDSLEAEKTVWEDISGG---------- 405 +TGD + I + V L V Q + K+++E+++ G Sbjct: 63 RITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFP--KSIYENVAYGPRIHGEKNKK 120 Query: 406 --DDIVKLNGH------EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGG 457 D IV+ + E+ R + SA SLSGGQ+ R+ +A+ L Sbjct: 121 TLDTIVEKSLKGAALWDEVKDRLHDSAL------------SLSGGQQQRLCIARTLAVNP 168 Query: 458 NVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHD 494 VIL+DEP + LD + +ED +E+ +I++H+ Sbjct: 169 EVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207 >gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Length = 242 Score = 66.0 bits (162), Expect = 2e-11 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 52/248 (20%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ +G+S S++ +++LS + PG + +IGPNGAGKTT+ ++TG PD G++ Sbjct: 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLF 61 Query: 377 GETVCLS--------------------YVDQS-RDSLE----AEKTVWEDISGGDDIVKL 411 G T + + + ++LE +K+V+ + +L Sbjct: 62 GGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF-----RL 116 Query: 412 NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL-D 470 + E + + + G LS GQ+ + + +L ++LLDEP + D Sbjct: 117 SAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTD 176 Query: 471 TETLSALEDALENFAG-CAVI-ISHDRMFLDRLAT--------HILAFEGNGHVEWFEGN 520 ET + L++ AG +V+ + HD F+ +A +LA EG+ Sbjct: 177 EET-EKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLA----------EGS 225 Query: 521 FEEYEKDK 528 ++ + D Sbjct: 226 LDQVQADP 233 Score = 63.7 bits (156), Expect = 1e-10 Identities = 66/235 (28%), Positives = 108/235 (45%), Gaps = 41/235 (17%) Query: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64 I ++ GLS F K L+D++L P I+GPNGAGK+T++ ++ G + G Sbjct: 1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVL 60 Query: 65 LA----TGFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112 TG +G Q+P + + TV EN+ + +++ + Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVF----ASLF--F 114 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 + EE ++++++++ GL D A GL LS G+K+ + + LL+ Sbjct: 115 RLSAEEKDRIEEVLETIGLADE----------ADRLA-GL----LSHGQKQWLEIGMLLM 159 Query: 173 SSPDLLLLDEPTNHL-DAETIAWMEKYLREYSG--AVLMVTHD----RYFLDNVT 220 P LLLLDEP + D ET E L+ +G +V++V HD R D VT Sbjct: 160 QDPKLLLLDEPVAGMTDEETEKTAE-LLKSLAGKHSVVVVEHDMEFVRSIADKVT 213 >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional. Length = 510 Score = 65.8 bits (161), Expect = 2e-11 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 46/194 (23%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA---- 66 +SK + +VL I+ + + +LG NGAGKST+++I+AGI +G + Sbjct: 16 SISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPC 75 Query: 67 TGFTVG-------YL-PQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 T YL PQEP L + +VKENI+ G+ +QA +K ++ Sbjct: 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQAS-----------MQKMKQL 124 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 +A L +D L A L + +++ V + + L+ +L Sbjct: 125 LAALGCQLD-----------------LDSSAGSLEV-----ADRQIVEILRGLMRDSRIL 162 Query: 179 LLDEPTNHLD-AET 191 +LDEPT L AET Sbjct: 163 ILDEPTASLTPAET 176 Score = 56.2 bits (136), Expect = 2e-08 Identities = 24/65 (36%), Positives = 40/65 (61%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ A+ ISK Y+ ++ + F L G + ++G NGAGK+TL +++ G PDSGT+ + Sbjct: 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEI 70 Query: 377 GETVC 381 G C Sbjct: 71 GGNPC 75 Score = 53.5 bits (129), Expect = 1e-07 Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 24/195 (12%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC------------L 382 N+S ++ G I+G+ G GAG+T L L G G I + L Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 Query: 383 SYVDQSRDS----LEAEKTVWEDISGGDDIVKLNGHEINSRA----YCSAFNFKGGDQQQ 434 Y+ + R S L+A W + + A Y A N K +Q Sbjct: 341 VYLPEDRQSSGLYLDAPLA-WNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ 399 Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA--GCAVI-I 491 +LSGG + +V +AK L++ ++++DEPT +D + + + + A AV+ I Sbjct: 400 AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFI 459 Query: 492 SHDRMFLDRLATHIL 506 S D ++++A +L Sbjct: 460 SSDLEEIEQMADRVL 474 Score = 37.0 bits (86), Expect = 0.013 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET---IAWMEKYLREYSGAVLMVTHD 212 LSGG +++V + K L +SP LL++DEPT +D I + + + + AVL ++ D Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSD 462 >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional. Length = 271 Score = 66.0 bits (161), Expect = 2e-11 Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 55/235 (23%) Query: 3 RKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------- 52 +K ++ L+ +G L +INL + + I+GP+G GKST ++ + Sbjct: 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSV 80 Query: 53 --AG---------IDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAIL 101 G DK Y+ E L T VG + Q+P K++ +N+ G I Sbjct: 81 KTTGKILYRDQNIFDKSYSVEE-LRT--NVGMVFQKPN-PFPKSIYDNVTYG-PKIHGIK 135 Query: 102 DRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGE 161 D+ KT +EI + + +WD E++ + LH N LSGG+ Sbjct: 136 DK----------KTLDEIV--EKSLRGAAIWD---ELK---DRLH-----DNAYGLSGGQ 172 Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 ++R+ + + L PD++L+DEPT+ LD + +E+ ++E YS +++VTH+ Sbjct: 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS--IIIVTHN 225 Score = 42.1 bits (99), Expect = 3e-04 Identities = 60/266 (22%), Positives = 117/266 (43%), Gaps = 63/266 (23%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRMLTGDESPDS 371 VV + + ++ Y + + N++ + + +IGP+G GK+T L RM+ + P Sbjct: 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV--ELVPSV 80 Query: 372 GTIHVGETVCLSYVDQ-------SRDSLEAE------------KTVWEDISGG------- 405 T G+ + Y DQ S + L K+++++++ G Sbjct: 81 KT--TGKIL---YRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIK 135 Query: 406 -----DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILK 454 D+IV+ L G E+ R + +A+ LSGGQ+ R+ +A+ L Sbjct: 136 DKKTLDEIVEKSLRGAAIWDELKDRLHDNAY------------GLSGGQQQRLCIARCLA 183 Query: 455 SGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNG 512 +VIL+DEPT+ LD + +E+ ++ +I++H+ R++ AF NG Sbjct: 184 IEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKT-AFFLNG 242 Query: 513 HVEWFEGNFEEYEKDKLSRSSRVLSG 538 +V ++ + + R+ ++G Sbjct: 243 YVNEYDDTDKIFSNPSDKRTEDYITG 268 >gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 65.5 bits (160), Expect = 3e-11 Identities = 60/215 (27%), Positives = 106/215 (49%), Gaps = 27/215 (12%) Query: 318 IEAKGISKSYN-----DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 I+ + ++ Y ++ +DN++ ++ G VG+IG G+GK+TL + L G P SG Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62 Query: 373 TIHV------GETVCLSY-------VDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419 I + + V LS V Q + E+T+ +DI+ G + L+ EI +R Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122 Query: 420 AYCSAFNFKGGD----QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----T 471 A N G D + + LSGGQ+ RV +A ++ +++LDEPT LD Sbjct: 123 VK-RAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181 Query: 472 ETLSALEDALENFAGCAVIISHDRMFLDRLATHIL 506 E L+ +++ + + +++SH + +LA I+ Sbjct: 182 EILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216 Score = 59.7 bits (145), Expect = 2e-09 Identities = 59/205 (28%), Positives = 102/205 (49%), Gaps = 33/205 (16%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 KK LD++N+ +G++G G+GKST+++ + G+ K +G+ + G + Sbjct: 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIII-DGVDI------- 71 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII---DSKGLWDLE 135 K VK + I K ++ +Y E + EE I K DI + GL + E Sbjct: 72 ---TDKKVKLSDIR---KKVGLVFQYPEYQL-----FEETIEK--DIAFGPINLGLSEEE 118 Query: 136 TEVQV--AIESLHCPADGLNITS---LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA- 189 E +V A+ + + S LSGG+KRRVA+ ++ P +L+LDEPT LD Sbjct: 119 IENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPK 178 Query: 190 ---ETIAWMEKYLREYSGAVLMVTH 211 E + +++ +EY+ +++V+H Sbjct: 179 GRDEILNKIKELHKEYNMTIILVSH 203 >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. Length = 265 Score = 65.2 bits (159), Expect = 4e-11 Identities = 53/215 (24%), Positives = 99/215 (46%), Gaps = 23/215 (10%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 Y GL VL +++LS +G+LG +G GKST+ R++ G++K G Sbjct: 11 TYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF 70 Query: 66 ATGFTVGYLPQEPQLDLSKTVK---ENIIEGVAHKQAILDRYNELMMNYSEKTE-EEIAK 121 G + L ++ + + V+ ++ V + + E + + + E E+ A+ Sbjct: 71 R-GQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKAR 129 Query: 122 LQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 + +++D + L +E AD L LSGG+ +R+ + + L P L++LD Sbjct: 130 IAELLD---MVGLRSED----------ADKLP-RQLSGGQLQRINIARALAVKPKLIVLD 175 Query: 182 EPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 E ++LD A + + K + + A L +THD Sbjct: 176 EAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHD 210 Score = 60.6 bits (147), Expect = 1e-09 Identities = 54/231 (23%), Positives = 92/231 (39%), Gaps = 33/231 (14%) Query: 317 VIEAKGISKSYNDRLL---------IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367 ++E + ++ +Y L + N+S + G VG++G +G GK+TL R+L G E Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61 Query: 368 SPDSGTIH----------------VGETVCLSYVDQSRDSLEAEKTVWEDISGG-DDIVK 410 P GT+ V L + D S ++ TV + I + Sbjct: 62 KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQD-SPSAVNPRMTVRQIIGEPLRHLTS 120 Query: 411 LNGHEINSR--AYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 L+ E +R + D + LSGGQ R+++A+ L +I+LDE ++ Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180 Query: 469 LD----TETLSALEDALENFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 LD L L + F + I+HD + + + VE Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231 >gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. Length = 243 Score = 64.6 bits (158), Expect = 6e-11 Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 39/247 (15%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY---NGEAWLATGFTVGYLP 75 K++L +NL+ I+GPNG+GKST+ + +AG Y +G + P Sbjct: 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG-HPSYEVTSGTILFKGQDLLELEP 71 Query: 76 QEPQ---LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 E L L+ E I GV++ + + N S + EE + L Sbjct: 72 DERARAGLFLAFQYPEEI-PGVSNLEFLRSALNARR---SARGEEPLD----------LL 117 Query: 133 DLETEVQVAIESLHCPAD----GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 D ++ + L + +N SGGEK+R + ++ L P L +LDE + LD Sbjct: 118 DFLKLLKAKLALLGMDEEFLNRSVN-EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176 Query: 189 -------AETIAWMEKYLREYSGAVLMVTHDRYFLDNVT-NWILEVDRGKGIPYQGNYSA 240 AE I LRE + L++TH + L+ + +++ + G+ I G+ Sbjct: 177 IDALKIVAEGI----NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGR-IVKSGDVEL 231 Query: 241 YLQMKAK 247 +++ K Sbjct: 232 AKELEEK 238 Score = 44.2 bits (105), Expect = 8e-05 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD--SGTI 374 S D+ ++ ++ + G I ++GPNG+GK+TL + + G S + SGTI Sbjct: 9 SVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59 >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional. Length = 491 Score = 64.0 bits (156), Expect = 1e-10 Identities = 112/505 (22%), Positives = 204/505 (40%), Gaps = 125/505 (24%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG 68 M+ +SK F K LD++NL P + ++G NGAGKST+L+ + GI ++ +G Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGS------ 54 Query: 69 FTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMN-----YSEK----TEEEI 119 + + +E SK EN I V H++ L +M N Y K ++++ Sbjct: 55 --ILFQGKEIDFKSSKEALENGISMV-HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKM 111 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 + D+K ++D E+ + I+ P + +LS + + + + K + +++ Sbjct: 112 YR-----DTKAIFD---ELDIDID----PRA--KVATLSVSQMQMIEIAKAFSYNAKIVI 157 Query: 180 LDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYS 239 +DEPT+ L + + + +R+ +RG GI Sbjct: 158 MDEPTSSLTEKEVNHLFTIIRKLK-----------------------ERGCGI------- 187 Query: 240 AYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELV-----ES 294 Y+ K + + Q + + I R+ WI + P + ++++ S Sbjct: 188 VYISHKMEEIFQ-----LCDEITILRDGQWIATQP--------LAGLTMDKIIAMMVGRS 234 Query: 295 AAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGA 354 R P + G V++E + ++ I ++SF L G I+G+ G GA Sbjct: 235 LTQRFP-------DKENKPGEVILEVRNLTSLRQPS--IRDVSFDLHKGEILGIAGLVGA 285 Query: 355 GKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLEAEKT----VWED-----ISG 404 +T + L G +GTI + G+ + + ++ EA V E+ I Sbjct: 286 KRTDIVETLFGIREKSAGTITLHGKKI------NNHNANEAINHGFALVTEERRSTGIYA 339 Query: 405 GDDIVKLNGHEINSRAYCSAF-------------------NFKGGDQQQRIGSLSGGQRG 445 DI N N R Y + K + +IGSLSGG + Sbjct: 340 YLDI-GFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQ 398 Query: 446 RVHLAKILKSGGNVILLDEPTNDLD 470 +V + + L + +++LDEPT +D Sbjct: 399 KVIIGRWLLTQPEILMLDEPTRGID 423 Score = 48.6 bits (116), Expect = 4e-06 Identities = 49/194 (25%), Positives = 90/194 (46%), Gaps = 24/194 (12%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-HVGET 379 ISKS+ +DN++ K+ P I ++G NGAGK+TL + L G DSG+I G+ Sbjct: 2 SNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKE 61 Query: 380 VCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVK--LNGHEINSRAYCSA 424 + S+++LE +++V +++ G K + R + Sbjct: 62 IDFK---SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAI 118 Query: 425 FNFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482 F+ D + ++ +LS Q + +AK ++++DEPT+ L + ++ L + Sbjct: 119 FDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIR 178 Query: 483 NFA--GCAVI-ISH 493 GC ++ ISH Sbjct: 179 KLKERGCGIVYISH 192 >gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein. Length = 617 Score = 63.9 bits (156), Expect = 1e-10 Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 33/183 (18%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTIL-----RIMAGIDKE----YNGEAWLATGF 69 K +L +++ P + ++G +GAGK+T++ R G+ NG A Sbjct: 38 KHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEM 97 Query: 70 TV--GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 Y+ Q+ + TV+E+++ QA L M +E+ ++ +++ Sbjct: 98 RAISAYVQQDDLFIPTLTVREHLM-----FQA------HLRMPRRVTKKEKRERVDEVLQ 146 Query: 128 SKGLWDL-ETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 + GL T + V + LSGGE++R+A LL+ P LL DEPT+ Sbjct: 147 ALGLRKCANTRIGV----------PGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 Query: 187 LDA 189 LD+ Sbjct: 197 LDS 199 Score = 35.8 bits (83), Expect = 0.026 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTL-----FRMLTG 365 L+ N+S PG ++ V+G +GAGKTTL FR G Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG 78 Score = 35.0 bits (81), Expect = 0.054 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 432 QQQRIG------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA 485 RIG LSGG+R R+ A L + ++ DEPT+ LD+ ++ L+ A Sbjct: 154 ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLA 213 Query: 486 --GCAVIIS 492 G +I + Sbjct: 214 QKGKTIICT 222 >gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional. Length = 1560 Score = 63.6 bits (155), Expect = 1e-10 Identities = 52/181 (28%), Positives = 86/181 (47%), Gaps = 46/181 (25%) Query: 18 SKKVLDDINLSFYPDAKIG-ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 K +L D+++S P K+ +LG G+GKST+L+ + + G W ++ Y+PQ Sbjct: 672 PKVLLRDVSVSV-PRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER--SIAYVPQ 728 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL----- 131 + + ++ TV+ NI+ D EE+ A+L D + L Sbjct: 729 QAWI-MNATVRGNIL--------FFD-------------EEDAARLADAVRVSQLEADLA 766 Query: 132 ---WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 LETE+ G+N LSGG+K RV+L + + ++ D+ LLD+P + LD Sbjct: 767 QLGGGLETEIG---------EKGVN---LSGGQKARVSLARAVYANRDVYLLDDPLSALD 814 Query: 189 A 189 A Sbjct: 815 A 815 Score = 47.5 bits (113), Expect = 9e-06 Identities = 67/276 (24%), Positives = 114/276 (41%), Gaps = 44/276 (15%) Query: 274 PKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGH----VVIEAKGISKSYND 329 P R + + S+A RH I+ G GH + K D Sbjct: 612 PTKRHPSPSVVVEDTDYGSPSSASRH------IVEGGTGGGHEATPTSERSAKTPKMKTD 665 Query: 330 -------RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCL 382 ++L+ ++S +P G + V+G G+GK+TL + L G + ++ Sbjct: 666 DFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSI-- 723 Query: 383 SYVDQSRDSLEAEKTVWEDISGGD--------DIVKLNGHEINSRAYCSAFNFKGGDQQQ 434 +YV Q + A TV +I D D V+++ E + GG + Sbjct: 724 AYVPQQAWIMNA--TVRGNILFFDEEDAARLADAVRVSQLEADLAQL-------GGGLET 774 Query: 435 RIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET--LSALEDALENFAGCA 488 IG +LSGGQ+ RV LA+ + + +V LLD+P + LD E L AG Sbjct: 775 EIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKT 834 Query: 489 VIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEY 524 +++ ++ + A +++A G VE F G+ ++ Sbjct: 835 RVLATHQVHVVPRADYVVALGD-GRVE-FSGSSADF 868 Score = 32.8 bits (75), Expect = 0.20 Identities = 53/204 (25%), Positives = 82/204 (40%), Gaps = 65/204 (31%) Query: 331 LLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RMLTGDESPDSGTIHVGETVCLSY-- 384 L++ +SF++ P VG++G G+GK+TL RM+ G I V +Y Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV----EVCGGEIRVNGREIGAYGL 1379 Query: 385 --------------------VDQSRDS-LEAEKT-VWEDISGGDDIVKLNGH------EI 416 V Q+ D LEA VW + ++V L I Sbjct: 1380 RELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAAL----ELVGLRERVASESEGI 1435 Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK-ILKSGGNVILLDEPTNDLDTETLS 475 +SR N+ S GQR + +A+ +LK G IL+DE T ++D Sbjct: 1436 DSRVLEGGSNY------------SVGQRQLMCMARALLKKGSGFILMDEATANID----P 1479 Query: 476 ALEDALEN-----FAGCAVI-ISH 493 AL+ ++ F+ VI I+H Sbjct: 1480 ALDRQIQATVMSAFSAYTVITIAH 1503 Score = 30.5 bits (69), Expect = 0.98 Identities = 13/29 (44%), Positives = 19/29 (65%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTIL 49 VL ++ P K+GI+G G+GKST+L Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLL 1353 >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 283 Score = 63.7 bits (155), Expect = 1e-10 Identities = 65/248 (26%), Positives = 109/248 (43%), Gaps = 57/248 (22%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA--------WLATGF---- 69 L IN++ ILG NGAGKST+ + + GI K +G + G Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81 Query: 70 -TVGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 +VG + Q+P L S +V +++ G + + D + + N ++T I L+D Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTG--IEHLKD--- 136 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 + HC LS G+K+RVA+ +L+ P +L+LDEPT L Sbjct: 137 ---------------KPTHC---------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172 Query: 188 DAETIAWMEKYLREYSG----AVLMVTHDRYFLDNVTNW---ILEVDRGKGIPYQGNYSA 240 D ++ + K L E +++ THD +D V + + + G+ I QGN Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHD---IDIVPLYCDNVFVMKEGRVI-LQGNPK- 227 Query: 241 YLQMKAKR 248 ++ A++ Sbjct: 228 --EVFAEK 233 Score = 59.1 bits (143), Expect = 3e-09 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 25/200 (12%) Query: 317 VIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +++ + ++ +Y+D + ++ + G + ++G NGAGK+TLF+ L G P SG I Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64 Query: 376 VG---------------ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420 E+V + V Q D+ +V++D+S G +KL E+ R Sbjct: 65 FDGKPIDYSRKGLMKLRESVGM--VFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122 Query: 421 YCSAFNFKGGD--QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETL 474 +A G + + + LS GQ+ RV +A +L V++LDEPT LD +E + Sbjct: 123 D-NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181 Query: 475 SALEDALENFAGCAVIISHD 494 L + + +I +HD Sbjct: 182 KLLVEMQKELGLTIIIATHD 201 >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional. Length = 265 Score = 63.3 bits (154), Expect = 1e-10 Identities = 60/222 (27%), Positives = 92/222 (41%), Gaps = 45/222 (20%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETV 380 + +S R L+ LS P G + G+IG NG+GK+TL +ML + P G I + Sbjct: 15 RNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQP 74 Query: 381 C-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKG 429 ++Y+ Q + E TV E ++ G + H R F Sbjct: 75 LESWSSKAFARKVAYLPQQLPAAEG-MTVRELVAIG----RYPWHGALGR-------FGA 122 Query: 430 GDQQQ----------------RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD--- 470 D+++ + SLSGG+R R +A ++ +LLDEPT+ LD Sbjct: 123 ADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 Query: 471 -TETLSALEDALENFAGCAVI-ISHDRMFLDRLATHILAFEG 510 + L AL L G VI + HD R +++A G Sbjct: 183 QVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRG 223 Score = 61.3 bits (149), Expect = 5e-10 Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 42/210 (20%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNG---------EAWLATGF 69 + +L ++L+F G++G NG+GKST+L+++ G E+W + F Sbjct: 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAF 83 Query: 70 T--VGYLPQE-PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 V YLPQ+ P + TV+E + G L R+ EK EE I+ + Sbjct: 84 ARKVAYLPQQLPAAE-GMTVRELVAIGRYPWHGALGRFG---AADREKVEEAISLV---- 135 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 GL L + + SLSGGE++R + L+ LLLDEPT+ Sbjct: 136 ---GLKPLAHRL---------------VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177 Query: 187 LD----AETIAWMEKYLREYSGAVLMVTHD 212 LD + +A + + +E V+ V HD Sbjct: 178 LDIAHQVDVLALVHRLSQERGLTVIAVLHD 207 >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). Length = 500 Score = 63.3 bits (154), Expect = 1e-10 Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 26/201 (12%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG----------- 365 ++E KGI K++ +D + ++ PG VG+ G NGAGK+TL ++L+G Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60 Query: 366 --DESP-DSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEIN----- 417 SP + I E + + Q +L E +V E+I G++I L G + Sbjct: 61 YWSGSPLKASNIRDTERAGIVIIHQEL-TLVPELSVAENIFLGNEIT-LPGGRMAYNAMY 118 Query: 418 --SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLS 475 ++ + + +G GGQ+ V +AK L +++LDEP++ L + Sbjct: 119 LRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETE 178 Query: 476 ALEDALENFA--GCAVI-ISH 493 L D + + G A + ISH Sbjct: 179 ILLDIIRDLKAHGVACVYISH 199 Score = 59.8 bits (145), Expect = 1e-09 Identities = 49/200 (24%), Positives = 82/200 (41%), Gaps = 42/200 (21%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI--------DKEYN 60 M G+ K FG K LD I+L P +G+ G NGAGKST+++I++G+ + ++ Sbjct: 4 MKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWS 63 Query: 61 GEAWLATGFT------VGYLPQEPQLDLSKTVKENIIEG--VAHKQAILDRYNELMMNYS 112 G A+ + + QE L +V ENI G + M Y+ Sbjct: 64 GSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGR--------MAYN 115 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 L+ E+Q+ ++ + GG+++ V + K L Sbjct: 116 AMYLRAKNLLR-------------ELQLDADN-----VTRPVGDYGGGQQQLVEIAKALN 157 Query: 173 SSPDLLLLDEPTNHLDAETI 192 LL+LDEP++ L + Sbjct: 158 KQARLLILDEPSSSLTEKET 177 Score = 46.4 bits (110), Expect = 2e-05 Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 39/186 (20%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-DKEYNGEAWLATGFTVGYLPQE 77 +K +DD++ S +G+ G GAG++ +++ + G ++ G ++ Sbjct: 273 RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI----------NG 322 Query: 78 PQLDLSKTVKENIIEGVA------HKQAILDRYN-------ELMMNYSEKTEEEIAKLQD 124 +D+ + + I G+A + I+ ++ ++ K + A Sbjct: 323 KPVDI-RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQ 381 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADG--LNITSLSGGEKRRVALCKLLLSSPDLLLLDE 182 II S AI+ L L I LSGG +++ L K+LL++P +L+LDE Sbjct: 382 IIGS------------AIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDE 429 Query: 183 PTNHLD 188 PT +D Sbjct: 430 PTRGVD 435 Score = 43.3 bits (102), Expect = 2e-04 Identities = 44/183 (24%), Positives = 74/183 (40%), Gaps = 25/183 (13%) Query: 313 LGHVVIEAKGISKSYND---RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD-ES 368 +G V++EA+ ++ R +D++SF L G I+GV G GAG+T L + L G Sbjct: 253 IGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG 312 Query: 369 PDSGTIH--------------VGETVCLSYVDQSRDSLEAEKTVWEDIS-------GGDD 407 G + + + + D+ R + V ++I+ Sbjct: 313 KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKM 372 Query: 408 IVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTN 467 + + K IG LSGG + + LAK+L + V++LDEPT Sbjct: 373 RIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTR 432 Query: 468 DLD 470 +D Sbjct: 433 GVD 435 >gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 63.2 bits (154), Expect = 2e-10 Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 55/224 (24%) Query: 14 KVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----------EYNG 61 VF G K+ L D++L +GP+G GKST LR + ++ +G Sbjct: 26 SVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 Query: 62 EAWLATGF-------TVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMM 109 E VG + Q+P K++ EN+ I G+A +A LD E++ Sbjct: 86 EDIYDPRLDVVELRARVGMVFQKPN-PFPKSIYENVAYGPRIHGLARSKAELD---EIVE 141 Query: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169 K GLW+ EV+ + LH P T LSGG+++R+ + + Sbjct: 142 TSLRKA--------------GLWE---EVK---DRLHEPG-----TGLSGGQQQRLCIAR 176 Query: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211 + SP+++L+DEP + LD A +E+ + E +++VTH Sbjct: 177 AIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTH 220 Score = 49.3 bits (118), Expect = 2e-06 Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 37/207 (17%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDSG 372 + A+ +S Y ++ + ++ +P + IGP+G GK+T R L T D +G Sbjct: 20 MRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG 79 Query: 373 TIHV-GETVCLSYVDQSRDSLEAE--------------KTVWEDISGGDDI-----VKLN 412 I + GE + D D +E K+++E+++ G I K Sbjct: 80 KITLDGEDI----YDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAE 135 Query: 413 GHEI--NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 EI S + + LSGGQ+ R+ +A+ + VIL+DEP + LD Sbjct: 136 LDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALD 195 Query: 471 ---TETLSALEDAL-ENFAGCAVIISH 493 T + L D L +N+ VI++H Sbjct: 196 PIATAKVEELIDELRQNY--TIVIVTH 220 >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional. Length = 506 Score = 63.4 bits (155), Expect = 2e-10 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 26/200 (13%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG--DESPDSGTI 374 ++E K I+K++ +DN+S K+ G IV + G NGAGK+TL ++L+G G I Sbjct: 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64 Query: 375 HV-GETVCLSYVDQSRDSLEA-------------EKTVWEDISGGDDIVK---LNGHEIN 417 GE + S + RD+ A E +V E+I G++I ++ + Sbjct: 65 IFEGEELQASNI---RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMY 121 Query: 418 SRAYCSAFNFK-GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDL---DTET 473 RA K + +G+L GQ+ V +AK L +++LDEPT L +T Sbjct: 122 LRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAV 181 Query: 474 LSALEDALENFAGCAVIISH 493 L + L+ + ISH Sbjct: 182 LLDIIRDLKAHGIACIYISH 201 Score = 51.5 bits (124), Expect = 5e-07 Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 49/202 (24%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKE--YN 60 M ++K FG K LD+++L + + G NGAGKST++++++G+ + E + Sbjct: 8 MKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFE 67 Query: 61 GEAWLATGFT------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM----MN 110 GE A+ + + QE L +V ENI G NE+ M+ Sbjct: 68 GEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLG-----------NEITPGGIMD 116 Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 Y L ++++ I PA + +L G+++ V + K Sbjct: 117 YDAMYLRAQKLLA-------------QLKLDIN----PA--TPVGNLGLGQQQLVEIAKA 157 Query: 171 LLSSPDLLLLDEPTNHL-DAET 191 L LL+LDEPT L ++ET Sbjct: 158 LNKQARLLILDEPTASLTESET 179 Score = 46.5 bits (111), Expect = 2e-05 Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 25/182 (13%) Query: 314 GHVVIEAKGIS---KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD-ESP 369 G V++E + ++ +D++SF L G I+G+ G GAG+T L + L G Sbjct: 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR 315 Query: 370 DSGTIHV-GETV-------------CLSYVDQSRDSLEAEKTVWEDI--SGGDDIVKL-- 411 G I + G+ V + D+ RD + V ++I + D Sbjct: 316 WEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR 375 Query: 412 --NGHEINS-RAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 + E+ + K + I LSGG + + LAK L +++LDEPT Sbjct: 376 IDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435 Query: 469 LD 470 +D Sbjct: 436 ID 437 Score = 44.5 bits (106), Expect = 7e-05 Identities = 18/37 (48%), Positives = 25/37 (67%) Query: 152 LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD 188 L I LSGG +++ L K LL +P +L+LDEPT +D Sbjct: 401 LAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional. Length = 253 Score = 63.3 bits (154), Expect = 2e-10 Identities = 64/233 (27%), Positives = 107/233 (45%), Gaps = 47/233 (20%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------- 52 MA GLS +G + L DI+L F + ++GP+G GKST LR + Sbjct: 1 MASPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP 60 Query: 53 -AGIDKE--YNGEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILD 102 A ++ E +GE VG + Q+P K++ EN+ G+ Sbjct: 61 GARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN-PFPKSIFENVAYGL-------- 111 Query: 103 RYNELMMNYSEKTEEEIA-KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGE 161 R N + K + +A +++ + LWD EV+ + LH A GL SGG+ Sbjct: 112 RVNGV------KDKAYLAERVERSLRHAALWD---EVK---DRLHESALGL-----SGGQ 154 Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 ++R+ + + L P++LL+DEP + LD +E+ + E +++VTH+ Sbjct: 155 QQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHN 207 Score = 49.8 bits (119), Expect = 2e-06 Identities = 45/188 (23%), Positives = 83/188 (44%), Gaps = 30/188 (15%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +EA+G+S Y D + ++S + + +IGP+G GK+T R L G G Sbjct: 7 MEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG 66 Query: 378 ETVCLSYVDQSRDSLEA-----------------EKTVWEDISGGDDIVKLNG----HEI 416 E + L + ++ K+++E+++ G +++NG + Sbjct: 67 E-ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG---LRVNGVKDKAYL 122 Query: 417 NSRAYCSAFNFKGGDQ-QQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 R S + D+ + R+ LSGGQ+ R+ +A+ L V+L+DEP + LD Sbjct: 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182 Query: 472 ETLSALED 479 +E+ Sbjct: 183 IATQKIEE 190 >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 63.1 bits (153), Expect = 2e-10 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 52/235 (22%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 A+K I + + +G + L I+L F + ++GP+G GKST LR + ++ Sbjct: 1 EAKKII-TSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIP 59 Query: 61 GEAWLATGFTVG---YLPQEPQLDLSK--------------TVKENIIEGVAHK----QA 99 G G Y P E + L K ++ EN+I G+ +A Sbjct: 60 GVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKA 119 Query: 100 ILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSG 159 +LD E E + + +WD EV+ + LH A SLSG Sbjct: 120 VLD----------EAVETSLKQ-------AAIWD---EVK---DHLHESA-----LSLSG 151 Query: 160 GEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 G+++RV + ++L PD++LLDEPT+ LD + +E L E +++VTH Sbjct: 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206 Score = 45.4 bits (107), Expect = 4e-05 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 28/194 (14%) Query: 313 LGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD 370 +I + + Y + + I +IGP+G GK+T R L D P Sbjct: 1 EAKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG 60 Query: 371 SGTIHVGETVCLSYVD---QSRDSLEAEK--------------TVWEDISGGDDIVKLNG 413 + + V L + + D ++ K +++E++ G + + Sbjct: 61 ---VTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKD 117 Query: 414 HEINSRAYCSAFNFKG--GDQQQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTN 467 + A ++ + + + SLSGGQ+ RV +A++L +VILLDEPT+ Sbjct: 118 KAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTS 177 Query: 468 DLDTETLSALEDAL 481 LD + + +E+ L Sbjct: 178 ALDPISSTQIENML 191 >gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. Length = 1522 Score = 63.0 bits (153), Expect = 2e-10 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 35/157 (22%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQ----S 388 ++ ++F +P G +V V+G G GK++L L + G +H+ +V +YV Q Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSV--AYVPQQAWIQ 711 Query: 389 RDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN----------FKGGDQQQRIG- 437 DSL E+I L G +N + Y GD+ + IG Sbjct: 712 NDSLR------ENI--------LFGKALNEKYYQQVLEACALLPDLEILPSGDRTE-IGE 756 Query: 438 ---SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 +LSGGQ+ RV LA+ + S ++ L D+P + +D Sbjct: 757 KGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDA 793 Score = 58.0 bits (140), Expect = 7e-09 Identities = 61/228 (26%), Positives = 109/228 (47%), Gaps = 37/228 (16%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILR-IMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 L+ I S A + ++G G GKS++L ++A +DK E + +V Y+PQ+ + Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVHMKGSVAYVPQQAWI 710 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 + +++ENI+ G A L Y ++ E A L D+ E+ Sbjct: 711 Q-NDSLRENILFGKA-----------LNEKYYQQVLEACALLPDL-----------EILP 747 Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200 + + G+N LSGG+K+RV+L + + S+ D+ L D+P + +DA + +++ Sbjct: 748 SGDRTEIGEKGVN---LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVI 804 Query: 201 EYSGAV-----LMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQ 243 G + ++VTH +L V + I+ + GK I G+Y LQ Sbjct: 805 GPEGVLKNKTRILVTHGISYLPQV-DVIIVMSGGK-ISEMGSYQELLQ 850 Score = 50.3 bits (120), Expect = 1e-06 Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 43/185 (23%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL-----------ATGF 69 VL IN++ + K+GI+G GAGKS++ + I++ GE + F Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360 Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK---TEEEIAKLQDII 126 + +PQ+P L S +++ N LD +++ YS++ E+A L+ + Sbjct: 1361 KITIIPQDPVL-FSGSLRMN-----------LDPFSQ----YSDEEVWWALELAHLKTFV 1404 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 + C G N LS G+++ V L + LL +L+LDE T Sbjct: 1405 SA----------LPDKLDHECAEGGEN---LSVGQRQLVCLARALLRKTKILVLDEATAA 1451 Query: 187 LDAET 191 +D ET Sbjct: 1452 VDLET 1456 Score = 33.0 bits (75), Expect = 0.21 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE-NFAGCAVI-ISH 493 +LS GQR V LA+ L +++LDE T +D ET + ++ + F C V+ I+H Sbjct: 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAH 1478 >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature. Length = 363 Score = 62.9 bits (153), Expect = 2e-10 Identities = 48/197 (24%), Positives = 81/197 (41%), Gaps = 29/197 (14%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-G 377 + G K ND + G I ++G +G+GK+T RML P +G I + G Sbjct: 1 KKTGGKKGVND------ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDG 54 Query: 378 ETVC--------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 E + + V Q +L T+ ++ S G +++ E +A Sbjct: 55 ENIMKQSPVELREVRRKKIGMVFQQF-ALFPHMTILQNTSLGPELLGWPEQERKEKAL-E 112 Query: 424 AFNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 G + + LSGG + RV LA+ L + +++L+DE + LD +++D L Sbjct: 113 LLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDEL 172 Query: 482 ----ENFAGCAVIISHD 494 V I+HD Sbjct: 173 KKLQATLQKTIVFITHD 189 Score = 52.2 bits (125), Expect = 3e-07 Identities = 54/218 (24%), Positives = 86/218 (39%), Gaps = 48/218 (22%) Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------AG--------IDKE 58 K G KK ++D +L+ I+G +G+GKST +R++ AG I K+ Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60 Query: 59 YNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEE 118 E +G + Q+ L T+ +N L E+E Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQNT---------------SLGPELLGWPEQE 105 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 + + ++ L LE E H D LSGG ++RV L + L + PD+L Sbjct: 106 --RKEKALELLKLVGLE-------EYEHRYPD-----ELSGGMQQRVGLARALAAEPDIL 151 Query: 179 LLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 L+DE + LD M+ L ++ +THD Sbjct: 152 LMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD 189 >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional. Length = 265 Score = 62.7 bits (152), Expect = 2e-10 Identities = 60/262 (22%), Positives = 118/262 (45%), Gaps = 53/262 (20%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID-----KEYNGEAWL- 65 L+ +G + L +IN+ + ++GP+G GKST LR + Y GE L Sbjct: 22 LNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 Query: 66 ---ATGFTVGYLPQEPQLDLS----------KTVKENIIEGV----AHKQAILDRYNELM 108 + P E ++ +S K++ EN+ G+ +++IL+ Sbjct: 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE----- 136 Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168 ++++ + + LWD EV+ + L +LSGG+++R+ + Sbjct: 137 ------------RVENALRNAALWD---EVKDRLGDL--------AFNLSGGQQQRLCIA 173 Query: 169 KLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV--LMVTHDRYFLDNVTNWILEV 226 + L + P++LL DEPT+ LD A +E+ + + V L+VTH+ V+++ + Sbjct: 174 RALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYM 233 Query: 227 DRGKGIPYQGNYSAYLQMKAKR 248 G+ I + + +++ K K+ Sbjct: 234 YMGELIEFGATDTIFIKPKNKQ 255 Score = 43.8 bits (103), Expect = 1e-04 Identities = 42/202 (20%), Positives = 88/202 (43%), Gaps = 26/202 (12%) Query: 319 EAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGE 378 E ++ Y + N++ + + +IGP+G GK+T R G + GE Sbjct: 18 EVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGE 77 Query: 379 TVC----LSYVDQSRDSLEAE--------------KTVWEDISGGDDIVKLNGHEINSRA 420 + ++ + D +E K+++E+++ G I + I Sbjct: 78 IILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEER 137 Query: 421 YCSAFNFKG--GDQQQRIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 +A + + R+G +LSGGQ+ R+ +A+ L + ++L DEPT+ LD Sbjct: 138 VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIAT 197 Query: 475 SALEDALENFAG--CAVIISHD 494 +++E+ + + +I++H+ Sbjct: 198 ASIEELISDLKNKVTILIVTHN 219 >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional. Length = 228 Score = 62.5 bits (152), Expect = 3e-10 Identities = 59/211 (27%), Positives = 89/211 (42%), Gaps = 48/211 (22%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-------------- 66 +L + L I ++G +G+GKST+L I+AG+D +GE L Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 Query: 67 -TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI 125 VG++ Q L + EN+ L+ S + AK Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENV------------ELPALLRGESSRQSRNGAK---- 128 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 L ++ + H PA LSGGE++RVAL + PD+L DEPT Sbjct: 129 -------ALLEQLGLGKRLDHLPA------QLSGGEQQRVALARAFNGRPDVLFADEPTG 175 Query: 186 HLDAET---IAWMEKYL-REYSGAVLMVTHD 212 +LD +T IA + L RE+ +++VTHD Sbjct: 176 NLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 Score = 39.0 bits (91), Expect = 0.004 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVIISHD 494 LSGG++ RV LA+ +V+ DEPT +LD +T + D L ++++HD Sbjct: 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206 >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional. Length = 222 Score = 61.8 bits (150), Expect = 4e-10 Identities = 54/224 (24%), Positives = 107/224 (47%), Gaps = 21/224 (9%) Query: 12 LSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 +SK + G ++ L + P + G +GAGKST+L+++ GI++ G+ W + Sbjct: 7 VSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFS---- 62 Query: 71 VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130 G+ D+++ +K + + + ++ + + L+M ++T + + II Sbjct: 63 -GH-------DITR-LKNREVPFLRRQIGMIFQDHHLLM---DRTVYDNVAIPLIIAGAS 110 Query: 131 LWDLETEVQVAIESLHCPADGLNI-TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 D+ V A++ + N LSGGE++RV + + +++ P +LL DEPT +LD Sbjct: 111 GDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDD 170 Query: 190 ETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRGK 230 + + E++ VLM THD + + +L + G Sbjct: 171 ALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGH 214 Score = 55.7 bits (134), Expect = 3e-08 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 29/221 (13%) Query: 317 VIEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +I + +SK+Y R + ++F + PG + + G +GAGK+TL +++ G E P +G I Sbjct: 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIW 60 Query: 376 VG----------------ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419 + + + D L ++TV+++++ I +G +I R Sbjct: 61 FSGHDITRLKNREVPFLRRQIGMIFQDH---HLLMDRTVYDNVAIPLIIAGASGDDIRRR 117 Query: 420 AYCSAFNFKGG--DQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 SA K G D+ + LSGG++ RV +A+ + + V+L DEPT +LD Sbjct: 118 V--SAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 Query: 477 LEDALENF--AGCAVII-SHDRMFLDRLATHILAFEGNGHV 514 + E F G V++ +HD + R + +L +GH+ Sbjct: 176 ILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTL-SDGHL 215 >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 61.6 bits (149), Expect = 4e-10 Identities = 61/250 (24%), Positives = 123/250 (49%), Gaps = 29/250 (11%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNG---EAWLA 66 G++ + +VL +IN+ F P+ +I I+GP+G GKST+LR + ++ +G E + Sbjct: 9 GVNFFYHKHQVLKNINMDF-PERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVL 67 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR--YNELMMNYSEKTEEEIAKLQD 124 Y P ++L K V + ++I D + M+ + ++ +L + Sbjct: 68 LDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQS-----RLDE 122 Query: 125 IIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 +++ LWD EV+ ++LH GL +LSGG+++R+ + ++L P+++L+ Sbjct: 123 VVEKSLRQAALWD---EVK---DNLH--KSGL---ALSGGQQQRLCIARVLAIEPEVILM 171 Query: 181 DEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238 DEP + LD + +E+ ++E + +VTH+ ++W + G + Y Sbjct: 172 DEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTG 231 Query: 239 SAYLQMKAKR 248 + + + KR Sbjct: 232 EIFSRPRDKR 241 Score = 50.4 bits (120), Expect = 1e-06 Identities = 44/190 (23%), Positives = 85/190 (44%), Gaps = 24/190 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 I+ +G++ Y+ ++ N++ P I +IGP+G GK+TL R L SG G Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64 Query: 378 ETVCLSYVDQSRDSLEA-----------------EKTVWEDISGGDDIVKLNGHE----- 415 V L + +L+ K+++++++ G ++ Sbjct: 65 A-VLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEV 123 Query: 416 INSRAYCSAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 + +A + D + G +LSGGQ+ R+ +A++L VIL+DEP + LD + Sbjct: 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVST 183 Query: 475 SALEDALENF 484 +E+ ++ Sbjct: 184 MRIEELMQEL 193 >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional. Length = 648 Score = 61.7 bits (150), Expect = 5e-10 Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 45/213 (21%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 +VL I+L Y + I+G +G+GKST++ I+ +DK +G +A G V L Sbjct: 19 EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVA-GQDVATLDA 77 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI-------------AKLQ 123 + L++ +E H I RY+ L+ + + E+ + Q Sbjct: 78 D---ALAQLRRE-------HFGFIFQRYH-LLSHLTAAQNVEVPAVYAGLERKQRLLRAQ 126 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 +++ GL D E Q P+ LSGG+++RV++ + L++ ++L DEP Sbjct: 127 ELLQRLGLED-RVEYQ--------PS------QLSGGQQQRVSIARALMNGGQVILADEP 171 Query: 184 TNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212 T LD+ E +A + LR+ V++VTHD Sbjct: 172 TGALDSHSGEEVMAIL-HQLRDRGHTVIIVTHD 203 Score = 50.1 bits (120), Expect = 1e-06 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 3/63 (4%) Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT---ETLSALEDALENFAGCAVII 491 + LSGGQ+ RV +A+ L +GG VIL DEPT LD+ E + A+ L + +I+ Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIV 200 Query: 492 SHD 494 +HD Sbjct: 201 THD 203 Score = 38.9 bits (91), Expect = 0.003 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 4/63 (6%) Query: 318 IEAKGISKSY----NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 +E K I +SY ++ +S + G +V ++G +G+GK+TL +L + P SGT Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64 Query: 374 IHV 376 V Sbjct: 65 YRV 67 >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional. Length = 265 Score = 61.5 bits (149), Expect = 6e-10 Identities = 61/208 (29%), Positives = 92/208 (44%), Gaps = 26/208 (12%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386 Y + +NL+ ++P G +IGPNG GK+TL R L+ +P G + + Y Sbjct: 17 YGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS 76 Query: 387 QS---RDSLEAEK-------TVWEDISGG---DDIVKLNGHEINSRAYCSAFNFKGGDQ- 432 + R L A+ TV E ++ G + + + A A G Sbjct: 77 KEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL 136 Query: 433 -QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT-------ETLSALEDALENF 484 Q + +LSGGQR R +A +L ++LLDEPT LD E LS L + + + Sbjct: 137 ADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSEL-NREKGY 195 Query: 485 AGCAVIISHDRMFLDRLATHILAF-EGN 511 AV+ HD R A+H++A EG Sbjct: 196 TLAAVL--HDLNQACRYASHLIALREGK 221 Score = 59.6 bits (144), Expect = 2e-09 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 38/189 (20%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWL----- 65 L+ +G V +++ + PD I+GPNG GKST+LR ++ + +G WL Sbjct: 13 LTLGYGKYTVAENLTVEI-PDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHI 71 Query: 66 ------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 +G L Q TV+E + G Q + R+ ++ EE + Sbjct: 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWR-------KEDEEAV 124 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 K + + G+ L + ++ +LSGG+++R + +L ++L Sbjct: 125 TK---AMQATGITHLADQ---------------SVDTLSGGQRQRAWIAMVLAQETAIML 166 Query: 180 LDEPTNHLD 188 LDEPT LD Sbjct: 167 LDEPTTWLD 175 >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional. Length = 233 Score = 61.4 bits (149), Expect = 6e-10 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 32/206 (15%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77 VL +++ S + I+G +G+GKST+L ++ G+D +G+ + G + L Sbjct: 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSA 79 Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA-------KLQDIIDSKG 130 + +L K + +++ L+ +++ E +A K I+S+ Sbjct: 80 AKAELRN-----------QKLGFIYQFHHLLPDFT--ALENVAMPLLIGKKKPAEINSRA 126 Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 L ++ V + + H P++ LSGGE++RVA+ + L+++P L+L DEPT +LDA Sbjct: 127 L-EMLAAVGLEHRANHRPSE------LSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179 Query: 191 TIAWMEKYLREYS----GAVLMVTHD 212 + + L E + A L+VTHD Sbjct: 180 NADSIFQLLGELNRLQGTAFLVVTHD 205 Score = 57.1 bits (138), Expect = 1e-08 Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 27/212 (12%) Query: 315 HVVIEAKGISKSYND-RLLID---NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 ++++ + K Y + + D N+SF + G ++ ++G +G+GK+TL +L G ++P Sbjct: 3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT 62 Query: 371 SG-TIHVGETVC--------------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE 415 SG I G+ + L ++ Q L + T E+++ I K E Sbjct: 63 SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL-PDFTALENVAMPLLIGKKKPAE 121 Query: 416 INSRAYCSAFNFKGGDQ--QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD--- 470 INSRA G + R LSGG+R RV +A+ L + ++L DEPT +LD Sbjct: 122 INSRAL-EMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180 Query: 471 TETLSALEDALENFAGCA-VIISHDRMFLDRL 501 +++ L L G A ++++HD R+ Sbjct: 181 ADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM 212 >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional. Length = 352 Score = 61.4 bits (150), Expect = 6e-10 Identities = 28/60 (46%), Positives = 42/60 (70%), Gaps = 4/60 (6%) Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTH 211 SLSGGEK+RVA+ + LL++P+LLL+DEP LD E + ++E+ RE + +L V+H Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSH 187 Score = 48.7 bits (117), Expect = 4e-06 Identities = 62/217 (28%), Positives = 85/217 (39%), Gaps = 55/217 (25%) Query: 340 LPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRD-SLEAEKT- 397 LP GI + G +GAGKT+L ++G P G I + V D + L EK Sbjct: 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRV---LFDAEKGICLPPEKRR 77 Query: 398 ---VWED--------ISGG-------------DDIVKLNGHEINSRAYCSAFNFKGGDQQ 433 V++D + G D IV L G E Y Sbjct: 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPG---------- 127 Query: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAV 489 SLSGG++ RV + + L + ++L+DEP LD E L LE + Sbjct: 128 ----SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183 Query: 490 IISHDRMFLD---RLATHILAFEGNGHVEWFEGNFEE 523 +SH LD RLA ++ E G V+ F G EE Sbjct: 184 YVSHS---LDEILRLADRVVVLE-QGKVKAF-GPLEE 215 >gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional. Length = 286 Score = 61.4 bits (149), Expect = 6e-10 Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 51/215 (23%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----------EYNGEAWLAT 67 KKV DI LS Y A I+GP+G GKST LR + ++ ++GE + Sbjct: 56 KKVNADI-LSKYVTA---IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGED-IYG 110 Query: 68 GFT--------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 FT +G + Q+P K++ +NI G I D+ K EEI Sbjct: 111 KFTDEVLLRKKIGMVFQKPN-PFPKSIFDNIAYG-PRLHGINDK----------KQLEEI 158 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 ++ + LWD EV ++ N LSGG+++R+ + + L P++LL Sbjct: 159 --VEKSLRKAALWD---EVSDRLDK--------NALGLSGGQQQRLCVARTLAVEPEILL 205 Query: 180 LDEPTNHLDAETIAWMEKYLREYSGA--VLMVTHD 212 LDEPT+ LD + A +E ++E G+ +++VTH+ Sbjct: 206 LDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240 Score = 46.4 bits (110), Expect = 2e-05 Identities = 57/237 (24%), Positives = 109/237 (45%), Gaps = 40/237 (16%) Query: 315 HVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD-- 370 HVV AK S Y + + ++ + + +IGP+G GK+T R + D P Sbjct: 39 HVV--AKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCH 96 Query: 371 -SGTIHV-GETVCLSYVDQS--RDSLEA--------EKTVWEDISGGDDIVKLNG----- 413 +G + GE + + D+ R + K+++++I+ G +L+G Sbjct: 97 TTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGP---RLHGINDKK 153 Query: 414 --HEINSRAYCSAFNF-KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDL 469 EI ++ A + + D+ + LSGGQ+ R+ +A+ L ++LLDEPT+ L Sbjct: 154 QLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSAL 213 Query: 470 DTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEY 524 D + + +ED ++ G +I++H+ R++ + + F +EG E+ Sbjct: 214 DPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFF--------YEGVLVEH 262 >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional. Length = 260 Score = 61.2 bits (149), Expect = 7e-10 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 45/217 (20%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY-----------NGEAW 64 +G L +INL + +GP+G GKST+LR + + Y +GE Sbjct: 23 YGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENI 82 Query: 65 LATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 L VG + Q+P ++ +NI GV + + + +E E Sbjct: 83 LTPKQDIALLRAKVGMVFQKP-TPFPMSIYDNIAFGVRLFEKL---------SRAEMDE- 131 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 +++ + LW+ EV+ + LH SLSGG+++R+ + + + P++ Sbjct: 132 ---RVEWALTKAALWN---EVK---DKLHQSGY-----SLSGGQQQRLCIARGIAIRPEV 177 Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 LLLDEP + LD + +E+ + E V++VTH+ Sbjct: 178 LLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHN 214 Score = 41.5 bits (98), Expect = 6e-04 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 36/182 (19%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RM--LTGDESPDS 371 I+ + ++ Y + N++ + + IGP+G GK+TL RM L ++ + Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG 73 Query: 372 GTIHVGETVCLSYVDQSRDSLEAE------------KTVWEDISGGDDIVKLNGHEINSR 419 + GE + D + L A+ +++++I+ G V+L E SR Sbjct: 74 EILLDGENILTPKQDIAL--LRAKVGMVFQKPTPFPMSIYDNIAFG---VRL--FEKLSR 126 Query: 420 AYC----------SAFNFKGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 A +A + D+ + G SLSGGQ+ R+ +A+ + V+LLDEP + Sbjct: 127 AEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSA 186 Query: 469 LD 470 LD Sbjct: 187 LD 188 >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 269 Score = 60.2 bits (146), Expect = 1e-09 Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 30/183 (16%) Query: 317 VIEAKGISKSYN--DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +I K +S Y + ++SF +P G ++G NG+GK+T+ +++ G E SG I Sbjct: 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66 Query: 375 -----------------HVGETVCLSYVDQSRDSLEAEKTVWEDISGGDD---IVKLNGH 414 H+G V Q+ D+ V D++ G + + H Sbjct: 67 FYNNQAITDDNFEKLRKHIG------IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMH 120 Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 S A + D + +LSGGQ+ RV +A +L +VI+LDE T+ LD + Sbjct: 121 RRVSEALKQVDMLERADYEPN--ALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178 Query: 475 SAL 477 L Sbjct: 179 QNL 181 Score = 51.3 bits (123), Expect = 6e-07 Identities = 50/207 (24%), Positives = 93/207 (44%), Gaps = 45/207 (21%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE------YNGEAWLATGFT----- 70 L D++ + I+G NG+GKSTI ++M GI+K YN +A F Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 Query: 71 VGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129 +G + Q P + VK ++ G + N++ +E ++ + + Sbjct: 85 IGIVFQNPDNQFVGSIVKYDVAFG--------------LENHAVPYDEMHRRVSEAL--- 127 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD- 188 +V + + + P +LSGG+K+RVA+ +L +P +++LDE T+ LD Sbjct: 128 ------KQVDMLERADYEP------NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175 Query: 189 ---AETIAWMEKYLREYSGAVLMVTHD 212 + + K E++ ++ +THD Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITHD 202 >gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional. Length = 269 Score = 59.8 bits (145), Expect = 2e-09 Identities = 23/58 (39%), Positives = 39/58 (67%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +++ +G+S + +R + DN+S +P G I ++GP+G GKTTL R++ G +PD G I Sbjct: 7 LVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64 Score = 56.3 bits (136), Expect = 2e-08 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 32/215 (14%) Query: 9 MAGLSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLAT 67 M G+S G++ + D+I+L+ P KI I+GP+G GK+T+LR++ G +GE Sbjct: 10 MRGVSFTRGNRCIFDNISLTV-PRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF-D 67 Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELM--MNYSEKTE---EEIAKL 122 G + P + S+ + V + ++L + L MN + E +L Sbjct: 68 GENI------PAMSRSR------LYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL 115 Query: 123 QDIIDSKGLWDLETEVQVAIESLHCP-ADGLNITSLSGGEKRRVALCKLLLSSPDLLLLD 181 + L + V + +E++ A L + LSGG RR AL + + PDL++ D Sbjct: 116 PAPL-------LHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168 Query: 182 EPTNHLDAETIAWMEKYLREYSGAV----LMVTHD 212 EP D T+ + K + E + A+ ++V+HD Sbjct: 169 EPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 Score = 27.8 bits (62), Expect = 7.5 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---LSALEDALENFAGCA-VIISHD 494 LSGG R LA+ + ++I+ DEP D T L L L + G V++SHD Sbjct: 144 LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHD 203 >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional. Length = 253 Score = 59.5 bits (144), Expect = 2e-09 Identities = 64/252 (25%), Positives = 111/252 (44%), Gaps = 49/252 (19%) Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-----IMAGIDKE 58 KF L +GS V+ ++L + ++GP+G GKST+LR + + Sbjct: 2 KFAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61 Query: 59 YNGEAWL-------------ATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYN 105 GE L VG + Q P T+ +N+ GV + N Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGV--------KLN 113 Query: 106 ELMMNYSEKTEEEIAKLQD-IIDSKGLWDLETEVQVAIESLHCPADGLN--ITSLSGGEK 162 L+ K+++E+ + + + LWD EV+ D LN ++LSGG++ Sbjct: 114 GLV-----KSKKELDERVEWALKKAALWD---EVK----------DRLNDYPSNLSGGQR 155 Query: 163 RRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVT 220 +R+ + + L P +LL+DEPT ++D A +E+ L E +++VTH V+ Sbjct: 156 QRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVS 215 Query: 221 NWILEVDRGKGI 232 +++ + GK I Sbjct: 216 DYVAFLYLGKLI 227 Score = 53.3 bits (128), Expect = 2e-07 Identities = 49/195 (25%), Positives = 89/195 (45%), Gaps = 38/195 (19%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT-----GDESPDSG 372 IE + Y +I + K+P G+ ++GP+G GK+TL R +E+ G Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64 Query: 373 TIHV-GETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIVKLNG--- 413 + + G + VD +E + T++++++ G VKLNG Sbjct: 65 EVRLFGRNIYSPDVD----PIEVRREVGMVFQYPNPFPHLTIYDNVAIG---VKLNGLVK 117 Query: 414 --HEINSRAYCSAFNFKGGDQ-QQRI----GSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 E++ R + D+ + R+ +LSGGQR R+ +A+ L ++L+DEPT Sbjct: 118 SKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPT 177 Query: 467 NDLDTETLSALEDAL 481 ++D + +E+ L Sbjct: 178 ANIDPVGTAKIEELL 192 >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional. Length = 254 Score = 59.3 bits (143), Expect = 2e-09 Identities = 62/247 (25%), Positives = 109/247 (44%), Gaps = 25/247 (10%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +IE + ++ Y D ++N++ K+ I +IGP+G GK+T R L G Sbjct: 6 AIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKI 65 Query: 376 VGETVC--LSYVDQSRDSLEAEK--------------TVWEDIS------GGDDIVKLNG 413 G + + + D LE + +++++IS G D KL+ Sbjct: 66 EGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDE 125 Query: 414 HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 S + +N SLSGGQ+ R+ +A+ L NVIL+DEPT+ LD + Sbjct: 126 IVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPIS 185 Query: 474 LSALEDALENF--AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSR 531 +E+ + N + +I++H+ R++ AF NG +E E + K ++ Sbjct: 186 TGKIEELIINLKESYTIIIVTHNMQQAGRISDRT-AFFLNGCIEEESSTDELFFNPKNTK 244 Query: 532 SSRVLSG 538 + +SG Sbjct: 245 TEEYISG 251 Score = 56.6 bits (136), Expect = 1e-08 Identities = 60/235 (25%), Positives = 107/235 (45%), Gaps = 57/235 (24%) Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGID 56 + I L+ + K L++IN+ ++ ++GP+G GKST LR ++ GI Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64 Query: 57 KE----YNGEAWLATGFTV-------GYLPQEPQLDLSKTVKENI-----IEGVAHKQAI 100 E Y G+ + F + G + Q P L ++ +NI I G K+ + Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKL 123 Query: 101 LDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGG 160 E E+ + K LW+ EV+ + + N SLSGG Sbjct: 124 -----------DEIVEQSLKK-------SALWN---EVKDKLNT--------NALSLSGG 154 Query: 161 EKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKY---LREYSGAVLMVTHD 212 +++R+ + + L P+++L+DEPT+ LD + +E+ L+E S +++VTH+ Sbjct: 155 QQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHN 208 >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional. Length = 195 Score = 59.1 bits (143), Expect = 3e-09 Identities = 51/181 (28%), Positives = 76/181 (41%), Gaps = 45/181 (24%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT-------V 71 +K L D++++F P A I G NG GKS++LR++AGI + +G + Sbjct: 13 QKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYC 72 Query: 72 GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA--KLQDIIDSK 129 Y+ L L TV EN L ++E+ N +E I KL D++D K Sbjct: 73 TYIGHNLGLKLEMTVFEN-----------LKFWSEIY-NSAETLYAAIHYFKLHDLLDEK 120 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 SLS G ++ VA+ +L+ DL LLDE +L Sbjct: 121 ------------------------CYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 Query: 190 E 190 E Sbjct: 157 E 157 Score = 47.9 bits (114), Expect = 6e-06 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 24/185 (12%) Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH------- 375 + + + L D LS P I + G NG GK++L RM+ G P SG I+ Sbjct: 7 LQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNIN 65 Query: 376 -VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAFNFKGGD- 431 + + C +Y+ + L+ E TV+E++ +I NS Y + FK D Sbjct: 66 NIAKPYC-TYIGHNL-GLKLEMTVFENLKFWSEIY-------NSAETLYAAIHYFKLHDL 116 Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL---ENFAGCA 488 ++ SLS G + V +A+++ ++ LLDE +L E L + + N G Sbjct: 117 LDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIV 176 Query: 489 VIISH 493 ++ SH Sbjct: 177 LLSSH 181 >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 58.7 bits (142), Expect = 4e-09 Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 54/249 (21%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------------------IM 52 L+ +GSK++L DINL Y +GP+G GKST LR + Sbjct: 10 NLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDI 69 Query: 53 AGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNEL 107 GID + VG + Q+P K++ +N+ + G+A + LD Sbjct: 70 DGIDVYSVDTNVVLLRAKVGMVFQKPN-PFPKSIYDNVAYGPKLHGLAKNKKKLD----- 123 Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167 E E+ + + GLW+ E+ ++ + LSGG+++R+ + Sbjct: 124 -----EIVEKSLTSV-------GLWE---ELGDRLKD--------SAFELSGGQQQRLCI 160 Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHDRYFLDNVTNWILE 225 + + P +LL+DEP + LD +E ++E +++VTH V++ + Sbjct: 161 ARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAF 220 Query: 226 VDRGKGIPY 234 G+ + Y Sbjct: 221 FQSGRIVEY 229 Score = 36.7 bits (85), Expect = 0.016 Identities = 48/237 (20%), Positives = 97/237 (40%), Gaps = 57/237 (24%) Query: 320 AKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPDSGTIHVG 377 K ++ Y + ++ +++ + + IGP+G GK+T R D P+ G Sbjct: 8 VKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKV--KG 65 Query: 378 ETVCLSYVDQSRDS----LEAE------------KTVWEDISGG-------------DDI 408 E S D+ L A+ K+++++++ G D+I Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEI 125 Query: 409 VKLN------GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILL 462 V+ + E+ R SAF LSGGQ+ R+ +A+ + ++L+ Sbjct: 126 VEKSLTSVGLWEELGDRLKDSAFE------------LSGGQQQRLCIARAIAVKPTMLLM 173 Query: 463 DEPTNDLDTETLSALEDALE----NFAGCAVIISHDRMFLDRLATHILAFEGNGHVE 515 DEP + LD + +E+ ++ NF ++++H +++ + F+ VE Sbjct: 174 DEPCSALDPVATNVIENLIQELKKNFT--IIVVTHSMKQAKKVSDRVAFFQSGRIVE 228 >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 58.1 bits (140), Expect = 6e-09 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 49/219 (22%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI-----DKEYNGEAWLATGF- 69 +G L I++ + + +GP+G GKST LR+ + GE G Sbjct: 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI-RIDGRN 71 Query: 70 -------------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMN-YSEKT 115 VG + Q P K++ EN+ G+ R N + N + + Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPN-PFPKSIFENVAYGL--------RVNGVKDNAFIRQR 122 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP 175 EE K LWD EV+ ++ + +LSGG+++R+ + + + SP Sbjct: 123 VEETLK------GAALWD---EVKDKLKE--------SAFALSGGQQQRLCIARAMAVSP 165 Query: 176 DLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 +LL+DEP + LD + A +E+ + E +++VTH+ Sbjct: 166 SVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHN 204 Score = 55.8 bits (134), Expect = 3e-08 Identities = 56/242 (23%), Positives = 110/242 (45%), Gaps = 42/242 (17%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPDS-- 371 V I+A+ ++ Y D + +S ++ +V IGP+G GK+T R+ D P + Sbjct: 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61 Query: 372 -GTIHV-GETVCLS--YVDQSRDSLEA--------EKTVWEDISGGDDIVKLNGHEINSR 419 G I + G + VD+ R ++ K+++E+++ G +++NG + Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG---LRVNG--VKDN 116 Query: 420 AYCSAF---NFKGG---DQ-----QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 A+ KG D+ ++ +LSGGQ+ R+ +A+ + +V+L+DEP + Sbjct: 117 AFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASA 176 Query: 469 LDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEK 526 LD + + +E+ + VI++H+ R++ F + G EY+ Sbjct: 177 LDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFF--------YMGEMVEYDD 228 Query: 527 DK 528 K Sbjct: 229 TK 230 >gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 290 Score = 58.1 bits (141), Expect = 6e-09 Identities = 55/174 (31%), Positives = 76/174 (43%), Gaps = 50/174 (28%) Query: 330 RLLID-NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS----- 383 R L D N+S P G V +IG G+GK+TL + L G P SGT+ +GE V + Sbjct: 21 RALYDVNVSI--PSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNK 78 Query: 384 ----------YVDQSRDSLEAEKTVWEDISGG---------------DDIVKLNG--HEI 416 V Q + E+TV +DI G ++++L G E+ Sbjct: 79 KLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEEL 138 Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 +R S F LSGGQ RV +A +L V++LDEPT LD Sbjct: 139 LAR---SPFE------------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD 177 Score = 52.7 bits (127), Expect = 2e-07 Identities = 58/215 (26%), Positives = 96/215 (44%), Gaps = 52/215 (24%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA----TGFT---- 70 ++ L D+N+S + + I+G G+GKST+L+ + G+ + +G + T Sbjct: 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKK 79 Query: 71 -------VGYLPQEPQLDL-SKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKL 122 VG + Q P+ L +TV+++I G MN+ E+ K Sbjct: 80 LKPLRKKVGIVFQFPEHQLFEETVEKDICFGP--------------MNFGVSEEDAKQKA 125 Query: 123 QDIIDSKGLWDLETEVQVAIESL--HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 +++I+ GL E L P + LSGG+ RRVA+ +L P++L+L Sbjct: 126 REMIELVGL----------PEELLARSPFE------LSGGQMRRVAIAGVLAMEPEVLVL 169 Query: 181 DEPTNHLDA----ETIAWMEKYLREYSGAVLMVTH 211 DEPT LD E + K +E ++VTH Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTH 204 >gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional. Length = 1622 Score = 57.8 bits (140), Expect = 6e-09 Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 38/222 (17%) Query: 326 SYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS-GTIHVGETVCLSY 384 S +R + N++ +P G +V ++G G GKT+L + G+ P S ++ + TV +Y Sbjct: 626 SKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTV--AY 683 Query: 385 VDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFN----------FKGGDQQQ 434 V Q A TV ++I L G + Y A + GGD + Sbjct: 684 VPQVSWIFNA--TVRDNI--------LFGSPFDPERYERAIDVTALQHDLDLLPGGDLTE 733 Query: 435 RIG----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL-----SALEDALENFA 485 IG ++SGGQ+ RV +A+ + S +V + D+P + LD ++D L Sbjct: 734 -IGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRG-- 790 Query: 486 GCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKD 527 V++++ FL ++ IL EG + EG +EE + Sbjct: 791 KTRVLVTNQLHFLSQVDRIILVHEG---MIKEEGTYEELSNN 829 Score = 56.3 bits (136), Expect = 2e-08 Identities = 79/301 (26%), Positives = 127/301 (42%), Gaps = 82/301 (27%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ATGFT---- 70 VL ++ P K+GI+G GAGKS++L + I + G + G Sbjct: 1254 VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRK 1313 Query: 71 -VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE-EIAKLQDII-- 126 +G +PQ P L S TV+ N LD +NE N ++ E E A L+D+I Sbjct: 1314 VLGIIPQAPVL-FSGTVRFN-----------LDPFNE--HNDADLWESLERAHLKDVIRR 1359 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 +S G L+ EV A E + S G+++ ++L + LL +L+LDE T Sbjct: 1360 NSLG---LDAEVSEAGE------------NFSVGQRQLLSLARALLRRSKILVLDEATAA 1404 Query: 187 LDAETIAWMEKYLRE--YSGAVLMVTH--------DRYFLDNVTNWILEVDRGKGIPY-- 234 +D T A ++K +RE S +L++ H DR IL +D G+ + + Sbjct: 1405 VDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDR---------ILVLDAGRVVEFDT 1455 Query: 235 -----QGNYSAYLQM----------KAKRMAQENREEISR---QKAIERERDWIVSSPKA 276 SA+ +M + + E+ KA++ +R W+ SS A Sbjct: 1456 PENLLSNEGSAFSKMVQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLASSRWA 1515 Query: 277 R 277 Sbjct: 1516 A 1516 Score = 52.0 bits (125), Expect = 4e-07 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 35/268 (13%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQ 76 + L +INL + + I+G G GK++++ M G + + + G TV Y+PQ Sbjct: 628 AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG-TVAYVPQ 686 Query: 77 EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLET 136 + + TV++NI+ G +RY + ++ LQ +D DL T Sbjct: 687 VSWI-FNATVRDNILFGSPFDP---ERYERAI---------DVTALQHDLDLLPGGDL-T 732 Query: 137 EVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWM- 195 E+ G+NI SGG+K+RV++ + + S+ D+ + D+P + LDA + Sbjct: 733 EIG---------ERGVNI---SGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVF 780 Query: 196 EKYLR-EYSGAV-LMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY---SAYLQMKAKRMA 250 +K ++ E G ++VT+ +FL V IL V G I +G Y S + K M Sbjct: 781 DKCIKDELRGKTRVLVTNQLHFLSQVDRIIL-VHEGM-IKEEGTYEELSNNGPLFQKLME 838 Query: 251 QENREEISRQKAIERERDWIVSSPKARQ 278 + E ++ E E D S P A Sbjct: 839 NAGKMEEYVEENGEEEDDQTSSKPVANG 866 Score = 36.6 bits (85), Expect = 0.015 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 60/205 (29%) Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVC-------------L 382 LSF++ P VG++G GAGK+++ L + G I + C L Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDG--CDISKFGLMDLRKVL 1315 Query: 383 SYVDQS--------RDSLE-----AEKTVWEDISGG--DDIVKLNGHEINSRAYCSAFNF 427 + Q+ R +L+ + +WE + D+++ N +++ + NF Sbjct: 1316 GIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENF 1375 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL------ 481 S GQR + LA+ L +++LDE T +D T DAL Sbjct: 1376 ------------SVGQRQLLSLARALLRRSKILVLDEATAAVDVRT-----DALIQKTIR 1418 Query: 482 ENFAGCA-VIISHDRMFLDRLATHI 505 E F C +II+H RL T I Sbjct: 1419 EEFKSCTMLIIAH------RLNTII 1437 >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 57.7 bits (139), Expect = 7e-09 Identities = 55/224 (24%), Positives = 101/224 (45%), Gaps = 59/224 (26%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----EYNGEAWLATGF- 69 +G K+ L+DINL Y + ++GP+G GKST LR + ++ + GE L Sbjct: 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNI 73 Query: 70 ------------TVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYS 112 VG + Q+P ++ +N+ I G+ K+ + Sbjct: 74 YDKDVDVVELRKRVGMVFQKPN-PFPMSIYDNVAYGPRIHGIKDKKEL-----------D 121 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 + E + K LWD EV+ ++ + LSGG+++R+ + + + Sbjct: 122 KIVEWALKK-------AALWD---EVKDDLKK--------SALKLSGGQQQRLCIARTIA 163 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 PD++L+DEPT+ LD + +E + +EY+ +++VTH+ Sbjct: 164 VKPDVILMDEPTSALDPISTLKIEDLMVELKKEYT--IVIVTHN 205 Score = 44.6 bits (105), Expect = 6e-05 Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 44/227 (19%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML------------ 363 + +E+K ++ Y ++ +++++ + I +IGP+G GK+T R L Sbjct: 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKI 62 Query: 364 TGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTV--------------WEDISGGDDI- 408 G+ D I+ D+ D +E K V +++++ G I Sbjct: 63 EGEVLLDGKNIY----------DKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH 112 Query: 409 ---VKLNGHEINSRAYCSA--FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463 K +I A A ++ D ++ LSGGQ+ R+ +A+ + +VIL+D Sbjct: 113 GIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172 Query: 464 EPTNDLDTETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAF 508 EPT+ LD + +ED + VI++H+ R++ + F Sbjct: 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFF 219 >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 255 Score = 57.7 bits (140), Expect = 7e-09 Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 + G+ + L ++N++ ++ IV +IGPNGAGKTT+F LTG P GTI Sbjct: 6 LSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI 62 Score = 54.6 bits (132), Expect = 7e-08 Identities = 60/240 (25%), Positives = 111/240 (46%), Gaps = 34/240 (14%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT 70 GL FG ++++NL + ++GPNGAGK+T+ + G K G L G Sbjct: 10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL-RGQH 68 Query: 71 VGYLP-------------QEPQLDLSKTVKENIIEGVA-HKQAILDRYNELMMNYSEKTE 116 + LP Q +L TV EN++ VA H+Q ++ L+ + + Sbjct: 69 IEGLPGHQIARMGVVRTFQHVRLFREMTVIENLL--VAQHQQLKTGLFSGLLKTPAFRRA 126 Query: 117 EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 E + +D W LE +V + G +L+ G++RR+ + + +++ P+ Sbjct: 127 E-----SEALDRAATW-LE---RVGLLEHANRQAG----NLAYGQQRRLEIARCMVTQPE 173 Query: 177 LLLLDEPTNHLD-AETI---AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232 +L+LDEP L+ ET + + E++ VL++ HD + +++ I V++G + Sbjct: 174 ILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL 233 Score = 34.6 bits (80), Expect = 0.060 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPT---NDLDTETLSALEDALENFAGCAV-IIS 492 G+L+ GQ+ R+ +A+ + + +++LDEP N +T+ L L L N V +I Sbjct: 152 GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIE 211 Query: 493 HD 494 HD Sbjct: 212 HD 213 >gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional. Length = 250 Score = 57.7 bits (139), Expect = 8e-09 Identities = 51/209 (24%), Positives = 103/209 (49%), Gaps = 21/209 (10%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----EYNGEAWLA 66 L+ F +L ++NL ++ ++GP+G GKST +R + ++ + G +L Sbjct: 9 LNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYL- 67 Query: 67 TGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAK-LQDI 125 G + Y P ++L K V + ++I D + + E E+ I + +++ Sbjct: 68 DGVDI-YDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEES 126 Query: 126 IDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTN 185 + + LWD EV+ + L A GL SGG+++R+ + + + SP+++L+DEP + Sbjct: 127 LKAAALWD---EVK---DKLDKSALGL-----SGGQQQRLCIARTIAVSPEVILMDEPCS 175 Query: 186 HLDAETIAWMEKYLREYSG--AVLMVTHD 212 LD + +E + + +++VTH+ Sbjct: 176 ALDPISTTKIEDLIHKLKEDYTIVIVTHN 204 Score = 49.2 bits (117), Expect = 2e-06 Identities = 51/226 (22%), Positives = 100/226 (44%), Gaps = 33/226 (14%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 IE + ++ ++D ++ N++ +P + +IGP+G GK+T R L G H Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62 Query: 377 GETVCLSYVDQSRDSLEA-----------------EKTVWEDISGG---------DDIVK 410 G + L VD +++ K+++++++ G D I + Sbjct: 63 GH-IYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121 Query: 411 LNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + + A K + +G LSGGQ+ R+ +A+ + VIL+DEP + LD Sbjct: 122 RVEESLKAAALWD--EVKDKLDKSALG-LSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 Query: 471 TETLSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHV 514 + + +ED + VI++H+ R++ + +F NG + Sbjct: 179 PISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYT-SFFLNGEI 223 >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional. Length = 252 Score = 57.3 bits (138), Expect = 1e-08 Identities = 49/217 (22%), Positives = 96/217 (44%), Gaps = 44/217 (20%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR------------------IMAGIDK 57 FG + D+++ F ++ I+GP+G GKST+LR ++ D Sbjct: 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI 73 Query: 58 EYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 G ++ VG + Q+P + ++ +N+I G +N E Sbjct: 74 YDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYK-------------LNGRVNRSE 120 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 ++ + LWD EV+ ++S N LSGG+++R+ + + + P++ Sbjct: 121 ADEIVESSLKRVALWD---EVKDRLKS--------NAMELSGGQQQRLCIARTIAVKPEV 169 Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 +L+DEP + LD + +E+ + E +++VTH+ Sbjct: 170 ILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206 Score = 44.6 bits (105), Expect = 7e-05 Identities = 53/214 (24%), Positives = 95/214 (44%), Gaps = 31/214 (14%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---SGTIHVGETVCLSYVDQ 387 + ++S P + +IGP+G GK+T+ R + D P +G I + +T D+ Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT---DIYDR 76 Query: 388 SRDSLEAEKTV---------WEDISGGDDIV---KLNGH----EINSRAYCSAFNFKGGD 431 D + + V + +S D+++ KLNG E + S D Sbjct: 77 GVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWD 136 Query: 432 Q-QQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG 486 + + R+ S LSGGQ+ R+ +A+ + VIL+DEP + LD + +E+ +E Sbjct: 137 EVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE 196 Query: 487 --CAVIISHDRMFLDRLATHILAFEGNGHVEWFE 518 +I++H+ R++ + F VE E Sbjct: 197 KYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGE 230 >gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional. Length = 529 Score = 57.0 bits (138), Expect = 1e-08 Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 57/226 (25%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKST----ILRIMAGIDKEYNGEAW--- 64 L + V+ +I+ + P +G++G +G+GKST +LR++ GE W Sbjct: 292 LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINS-----QGEIWFDG 346 Query: 65 --LATGFTVGYLP---------QEPQLDLSK--TVKENIIEGVAHKQAILDRYNELMMNY 111 L LP Q+P L+ V + I EG+ Q L + Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTL--------SA 398 Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLH-CPADGLNITSLSGGEKRRVALCKL 170 +++ ++ IA ++ EV + E+ H PA+ SGG+++R+A+ + Sbjct: 399 AQREQQVIAVME-------------EVGLDPETRHRYPAE------FSGGQRQRIAIARA 439 Query: 171 LLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 L+ P L++LDEPT+ LD A+ +A ++ +++ A L ++HD Sbjct: 440 LILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHD 485 Score = 55.9 bits (135), Expect = 3e-08 Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 59/223 (26%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG----AVLMVTHD 212 LSGGE++RV + LL+ P+LL+ DEPT LD A + + LRE +L +TH+ Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN 216 Query: 213 ----RYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERD 268 R D V M+ R ++NR Sbjct: 217 LSIVRKLADRVA----------------------VMQNGRCVEQNR------------AA 242 Query: 269 WIVSSPKARQSKSKARIRSYEELVESAAHRHP----GNAQIIIPVGKRLGHVVIEAKGIS 324 + S+P ++ + V P Q+ P+ K + ++ + Sbjct: 243 TLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVV 302 Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRML 363 K N+SF L PG +G++G +G+GK+T L R++ Sbjct: 303 K---------NISFTLRPGETLGLVGESGSGKSTTGLALLRLI 336 Score = 38.5 bits (90), Expect = 0.004 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---LSALEDALENFAGCAVI-IS 492 SGGQR R+ +A+ L ++I+LDEPT+ LD + AL +L+ A + IS Sbjct: 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS 483 Query: 493 HD 494 HD Sbjct: 484 HD 485 Score = 32.0 bits (73), Expect = 0.40 Identities = 15/32 (46%), Positives = 21/32 (65%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 LSGG+R RV +A L + +++ DEPT LD Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALD 188 >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 282 Score = 56.7 bits (137), Expect = 1e-08 Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 29/203 (14%) Query: 317 VIEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG----DESPD 370 ++E K +S +Y D + ++++SF +P G +IG NG+GK+T+ +++ G D++P+ Sbjct: 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64 Query: 371 SGTIHVGETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEI---- 416 S G T+ + V Q+ D+ TV +D++ G + + E+ Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124 Query: 417 -NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----T 471 + A ++ + +LSGGQ+ RV +A IL +I+LDE T+ LD Sbjct: 125 RDVLADVGMLDYIDSEPA----NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKE 180 Query: 472 ETLSALEDALENFAGCAVIISHD 494 + L + + + I+HD Sbjct: 181 QILKLIRKLKKKNNLTVISITHD 203 Score = 44.0 bits (104), Expect = 9e-05 Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 48/213 (22%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG--IDKEYNGEAWLATGFT------ 70 K L+DI+ S + ++G NG+GKSTI +++ G + + G T Sbjct: 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79 Query: 71 ------VGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 VG + Q P + TV +++ G+ ++ M+ ++ L Sbjct: 80 WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV----PRPEMIKIVRDVLADVGML- 134 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 D IDS+ PA+ LSGG+K+RVA+ +L P +++LDE Sbjct: 135 DYIDSE------------------PAN------LSGGQKQRVAIAGILAVEPKIIILDES 170 Query: 184 TNHLDAETIAWMEKYLREYSG----AVLMVTHD 212 T+ LD + K +R+ V+ +THD Sbjct: 171 TSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional. Length = 258 Score = 56.7 bits (137), Expect = 1e-08 Identities = 57/224 (25%), Positives = 111/224 (49%), Gaps = 48/224 (21%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKE--Y 59 L+ +GS ++D+NL+ P + +GP+G GKST+LR + A ++ E Sbjct: 9 DLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLL 68 Query: 60 NGEAWLATGF-------TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112 +GE G T+G + Q P + ++++N++ G+ +L + Sbjct: 69 DGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGL-----------KLNGVRN 117 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 +K +E+ + + LW+ EV+ + L P GL SGG+++R+ + + + Sbjct: 118 KKDLDELV--EKSLRGANLWN---EVK---DRLDKPGGGL-----SGGQQQRLCIARAIA 164 Query: 173 SSPDLLLLDEPTNHLDA-ETIA---WMEKYLREYSGAVLMVTHD 212 PD+LL+DEP + LD T+A + + ++Y+ +++VTH+ Sbjct: 165 VEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT--IVIVTHN 206 Score = 51.3 bits (123), Expect = 7e-07 Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 37/208 (17%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFR---------------- 361 I+ K ++ Y +++++ + P + IGP+G GK+T+ R Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64 Query: 362 --MLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSR 419 +L G++ G V + V Q + ++ +++ G +KLNG Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPT-MSIRDNVVAG---LKLNGVRNKKD 120 Query: 420 AYCSA-FNFKGG-------DQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + +G D+ + G LSGGQ+ R+ +A+ + +V+L+DEP + LD Sbjct: 121 LDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 Query: 471 TETLSALEDAL----ENFAGCAVIISHD 494 + A+ED + +++ VI++H+ Sbjct: 181 PISTLAIEDLINELKQDYT--IVIVTHN 206 >gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 287 Score = 56.8 bits (137), Expect = 1e-08 Identities = 56/204 (27%), Positives = 90/204 (44%), Gaps = 25/204 (12%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCL--------- 382 +DN+SF+L G V ++G G+GK+TL + P SGTI + G + Sbjct: 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKK 82 Query: 383 -----SYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIG 437 S V Q ++ E TV +D+ G + E +A + K G + I Sbjct: 83 LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKAL--KWLKKVGLSEDLIS 140 Query: 438 ----SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVI- 490 LSGGQ RV +A ++ ++ LDEP LD E + +++ AG VI Sbjct: 141 KSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVIL 200 Query: 491 ISHDRMFLDRLATHILAFEGNGHV 514 ++H+ + A +L E +G + Sbjct: 201 VTHNMDDVAEYADDVLVLE-HGKL 223 Score = 55.2 bits (133), Expect = 4e-08 Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 35/227 (15%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 KK LD+I+ + + ++G G+GKST+++ + K +G +A G+ + P Sbjct: 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIA-GYHI-----TP 73 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII---DSKGLWDLE 135 + +K +K+ L + L+ + E E L+D+ + G + E Sbjct: 74 ETG-NKNLKK------------LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120 Query: 136 TEVQVA--IESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191 + + ++ + D ++ + LSGG+ RRVA+ ++ P++L LDEP LD E Sbjct: 121 AKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 Query: 192 IAWMEKYLREYSGA---VLMVTHDRYFLDNVTNW---ILEVDRGKGI 232 M + ++Y A V++VTH+ +D+V + +L ++ GK I Sbjct: 181 RKEMMQLFKDYQKAGHTVILVTHN---MDDVAEYADDVLVLEHGKLI 224 >gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional. Length = 1495 Score = 56.5 bits (136), Expect = 2e-08 Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 20/206 (9%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESP-DSGTIHVGETVCLSYVDQSRDS 391 + +++ ++P G +V ++G G GKT+L + G+ S ++ ++ + +V +YV Q Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSV--AYVPQVSWI 690 Query: 392 LEAEKTVWEDISGGDDI-VKLNGHEINSRAYCSAFNFKGGDQQQRIG----SLSGGQRGR 446 A TV E+I G D + I+ A + G IG ++SGGQ+ R Sbjct: 691 FNA--TVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748 Query: 447 VHLAKILKSGGNVILLDEPTNDLDTETL-----SALEDALENFAGCAVIISHDRMFLDRL 501 V +A+ + S ++ + D+P + LD S ++D L+ V++++ FL + Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK--GKTRVLVTNQLHFLPLM 806 Query: 502 ATHILAFEGNGHVEWFEGNFEEYEKD 527 IL EG + EG F E K Sbjct: 807 DRIILVSEG---MIKEEGTFAELSKS 829 Score = 54.6 bits (131), Expect = 6e-08 Identities = 55/204 (26%), Positives = 93/204 (45%), Gaps = 39/204 (19%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL------ATGFT---- 70 VL ++ P K+G++G GAGKS++L + I + G + G T Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRR 1310 Query: 71 -VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129 + +PQ P L S TV+ NI H A D + L E A ++D+ID + Sbjct: 1311 VLSIIPQSPVL-FSGTVRFNIDPFSEHNDA--DLWEAL----------ERAHIKDVID-R 1356 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 + L+ EV E+ S G+++ ++L + LL +L+LDE T +D Sbjct: 1357 NPFGLDAEVSEGGENF------------SVGQRQLLSLARALLRRSKILVLDEATASVDV 1404 Query: 190 ETIAWMEKYLRE--YSGAVLMVTH 211 T + +++ +RE S +L++ H Sbjct: 1405 RTDSLIQRTIREEFKSCTMLVIAH 1428 Score = 54.6 bits (131), Expect = 7e-08 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 27/172 (15%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77 SK L DINL + + I+G G GK++++ M G + + + + +V Y+PQ Sbjct: 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLG-ELSHAETSSVVIRGSVAYVPQV 687 Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 + + TV+ENI+ G + +RY + ++ LQ +D DL TE Sbjct: 688 SWI-FNATVRENILFGSDFES---ERYWRAI---------DVTALQHDLDLLPGRDL-TE 733 Query: 138 VQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 + G+NI SGG+K+RV++ + + S+ D+ + D+P + LDA Sbjct: 734 IG---------ERGVNI---SGGQKQRVSMARAVYSNSDIYIFDDPLSALDA 773 Score = 40.0 bits (93), Expect = 0.002 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 39/188 (20%) Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV--------GET---VCLSY 384 LSF + P VGV+G GAGK+++ L + G I + G T LS Sbjct: 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSI 1314 Query: 385 VDQS--------RDSLEA-----EKTVWEDISGG--DDIVKLNGHEINSRAYCSAFNFKG 429 + QS R +++ + +WE + D++ N +++ +G Sbjct: 1315 IPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEV------SEG 1368 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL-ENFAGCA 488 G+ + S GQR + LA+ L +++LDE T +D T S ++ + E F C Sbjct: 1369 GE------NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCT 1422 Query: 489 VIISHDRM 496 +++ R+ Sbjct: 1423 MLVIAHRL 1430 >gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. Length = 1490 Score = 56.5 bits (136), Expect = 2e-08 Identities = 52/193 (26%), Positives = 85/193 (44%), Gaps = 32/193 (16%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 VL +I+ + + G G+GKS++L ++ G + G+ + + + PQ + Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGK--IKHSGRISFSPQTSWI 498 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 + T+K+NII G+++ D Y + + + EE+IA E + V Sbjct: 499 -MPGTIKDNIIFGLSY-----DEYRYTSVIKACQLEEDIALFP-----------EKDKTV 541 Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLR 200 E IT LSGG++ R++L + + DL LLD P HLD T EK + Sbjct: 542 LGEG--------GIT-LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT----EKEIF 588 Query: 201 EYSGAVLMVTHDR 213 E LM R Sbjct: 589 ESCLCKLMSNKTR 601 Score = 56.5 bits (136), Expect = 2e-08 Identities = 63/222 (28%), Positives = 97/222 (43%), Gaps = 33/222 (14%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI-HVGETVCLSYVDQSRD 390 ++ N+SFKL G ++ V G G+GK++L M+ G+ P G I H G +S+ Q+ Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGR---ISFSPQT-- 495 Query: 391 SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA---------FNFKGGDQQQRIG-SLS 440 S T+ ++I I L+ E + A F K G +LS Sbjct: 496 SWIMPGTIKDNI-----IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLS 550 Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAVIISHDRMF--- 497 GGQR R+ LA+ + ++ LLD P LD T E + C ++ + R+ Sbjct: 551 GGQRARISLARAVYKDADLYLLDSPFTHLDVVT----EKEIFESCLCKLMSNKTRILVTS 606 Query: 498 -LDRL--ATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVL 536 L+ L A IL G +F G F E + + SS +L Sbjct: 607 KLEHLKKADKILLLH-EGVC-YFYGTFSELQAKRPDFSSLLL 646 Score = 54.9 bits (132), Expect = 5e-08 Identities = 54/201 (26%), Positives = 90/201 (44%), Gaps = 48/201 (23%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI---MAGIDKEY--NGEAWLATGF-- 69 + VL D++ S ++G+LG G+GKST+L + + E +G +W + Sbjct: 1230 AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQT 1289 Query: 70 ---TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII 126 G +PQ+ + S T ++N LD Y + +S+ EEI K+ + Sbjct: 1290 WRKAFGVIPQKVFI-FSGTFRKN-----------LDPYEQ----WSD---EEIWKVAE-- 1328 Query: 127 DSKGLWDLETEVQVAIESLHCPADGLNIT------SLSGGEKRRVALCKLLLSSPDLLLL 180 E ++ IE D L+ LS G K+ + L + +LS +LLL Sbjct: 1329 --------EVGLKSVIEQF---PDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLL 1377 Query: 181 DEPTNHLDAETIAWMEKYLRE 201 DEP+ HLD T+ + K L++ Sbjct: 1378 DEPSAHLDPVTLQIIRKTLKQ 1398 Score = 49.9 bits (119), Expect = 1e-06 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 30/205 (14%) Query: 314 GHVVIEAKGISKSYND--RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF----RMLTGDE 367 G + + +G++ Y + R ++ +LSF + G VG++G G+GK+TL R+L+ + Sbjct: 1216 GQMDV--QGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEG 1273 Query: 368 -------SPDSGTIH-------VGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNG 413 S +S T+ V + R +L+ + W D ++I K+ Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQ-WSD----EEIWKV-A 1327 Query: 414 HEINSRAYCSAFNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 E+ ++ F K G LS G + + LA+ + S ++LLDEP+ LD Sbjct: 1328 EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPV 1387 Query: 473 TLSALEDAL-ENFAGCAVIISHDRM 496 TL + L ++F+ C VI+S R+ Sbjct: 1388 TLQIIRKTLKQSFSNCTVILSEHRV 1412 >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 279 Score = 56.7 bits (137), Expect = 2e-08 Identities = 55/206 (26%), Positives = 102/206 (49%), Gaps = 24/206 (11%) Query: 317 VIEAKGISKSYN---DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGT 373 +IE K ++ Y ++ ++++SF + G + +IG NG+GK+T R++ G +SG Sbjct: 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63 Query: 374 IHV-GETVC----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC 422 I + G+ + + V Q+ D+ TV +D++ G + + E+ R Sbjct: 64 IIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVN- 122 Query: 423 SAFNFKG-GDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSA 476 A G D ++R + LSGGQ+ RV +A + +I+LDE T+ LD E + Sbjct: 123 EALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKT 182 Query: 477 LEDALENFAGCAVIISHDRMFLDRLA 502 ++ +++ + I+HD LD +A Sbjct: 183 IKGIRDDYQMTVISITHD---LDEVA 205 Score = 45.9 bits (109), Expect = 3e-05 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 7/68 (10%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIAWMEKYLREYSGAVLMVTHD 212 LSGG+K+RVA+ + P +++LDE T+ LD E I ++ +Y V+ +THD Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200 Query: 213 RYFLDNVT 220 LD V Sbjct: 201 ---LDEVA 205 >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional. Length = 250 Score = 56.6 bits (137), Expect = 2e-08 Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 67/228 (29%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKE--YNGEAW 64 +G + L INL + ++GP+G GKST LR + I+ E +G+ Sbjct: 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDI 72 Query: 65 LATGFT-------VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELMMNYS 112 + VG + Q+P ++ +N+ G+ K Sbjct: 73 YKSDIDVNQLRKRVGMVFQQPNP-FPMSIYDNVAYGPRTHGIKDK--------------- 116 Query: 113 EKTEEEIAKLQDIIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168 KL +I++ LWD EV+ + L A LSGG+++R+ + Sbjct: 117 -------KKLDEIVEKSLKGAALWD---EVK---DRLKKSA-----LGLSGGQQQRLCIA 158 Query: 169 KLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 + L P++LL+DEPT+ LD + +E+ ++E Y+ +++VTH+ Sbjct: 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYT--IVIVTHN 204 Score = 48.5 bits (116), Expect = 4e-06 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 46/196 (23%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---SG 372 I K + Y D + ++ + + +IGP+G GK+T R L D P G Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG 63 Query: 373 TIHV-GETVCLSYVD----QSRDSLEAEK------TVWEDISGG------------DDIV 409 + + G+ + S +D + R + ++ +++++++ G D+IV Sbjct: 64 EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIV 123 Query: 410 K--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463 + L G E+ R SA LSGGQ+ R+ +A+ L V+L+D Sbjct: 124 EKSLKGAALWDEVKDRLKKSAL------------GLSGGQQQRLCIARALAVEPEVLLMD 171 Query: 464 EPTNDLDTETLSALED 479 EPT+ LD + +E+ Sbjct: 172 EPTSALDPISTLKIEE 187 >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional. Length = 623 Score = 56.0 bits (135), Expect = 2e-08 Identities = 89/399 (22%), Positives = 150/399 (37%), Gaps = 89/399 (22%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 LSGG ++RV + L P +L+ DEPT LD A+ + ++ +E S V+ +THD Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228 Query: 213 RYFLDNVTNWILEVDRGKGIPY----------QGNYSAYLQMKAKRMAQENREEISRQKA 262 + + + +L + +G+ + Q Y+ L ++ + R+ Sbjct: 229 MGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFP 288 Query: 263 IERERDWIVSSPKARQSKSKAR--IRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEA 320 + P Q I LV R P + ++ V R H V Sbjct: 289 LISLEHPAKQEPPIEQDTVVDGEPILQVRNLVT----RFPLRSGLLNRV-TREVHAV--- 340 Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG--- 377 + +SF L PG + ++G +G+GK+T R L G I Sbjct: 341 -------------EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQR 387 Query: 378 -ETVCLSYVDQSRD-----------SLEAEKTVWEDISGGDDIVK-------LNGHEINS 418 +T+ + R SL+ +TV GD I++ L G + Sbjct: 388 IDTLSPGKLQALRRDIQFIFQDPYASLDPRQTV------GDSIMEPLRVHGLLPGKAAAA 441 Query: 419 RAYCSAFNFKGGDQQQRIG-----------SLSGGQRGRVHLAKILKSGGNVILLDEPTN 467 R +R+G SGGQR R+ +A+ L VI+ DE + Sbjct: 442 RV---------AWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVS 492 Query: 468 DLDT----ETLSALEDALENFAGCAVIISHDRMFLDRLA 502 LD + ++ L D +F + ISHD ++R++ Sbjct: 493 ALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERIS 531 Score = 33.7 bits (77), Expect = 0.13 Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 6/73 (8%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA----LEDALENFAGCAVI-ISH 493 LSGG R RV +A L V++ DEPT LD T+ A L L+ VI I+H Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDV-TIQAQILQLIKVLQKEMSMGVIFITH 227 Query: 494 DRMFLDRLATHIL 506 D + +A +L Sbjct: 228 DMGVVAEIADRVL 240 >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. Length = 2272 Score = 56.2 bits (135), Expect = 2e-08 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 18/207 (8%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC--LSYVDQSR 389 +D L + PG G++G NGAGKTT F+MLTGD + SG V G+++ +S V Q+ Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 Query: 390 DSLEAEKTVWEDISGGDDI---VKLNG---HEINSRAYCSAFNFKGGDQQQRI-GSLSGG 442 + + ++G + + +L G EI A S + R+ G+ SGG Sbjct: 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGG 2074 Query: 443 QRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF--AGCAVIISHDRM---- 496 + ++ A L ++LLDEPT +D + L + + + G AV+++ M Sbjct: 2075 NKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 Query: 497 -FLDRLATHIL-AFEGNGHVEWFEGNF 521 RLA + AF+ G ++ + F Sbjct: 2135 ALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 Score = 53.9 bits (129), Expect = 1e-07 Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 17/181 (9%) Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSR 389 R +D L+ I +G NGAGKTT +LTG P SGT+ VG + +D R Sbjct: 943 RPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVR 1002 Query: 390 DSL---EAEKTVWEDISGGDDIV---KLNGH-------EINSRAYCSAFNFKGGDQQQRI 436 SL ++ ++ + I+ +L G E+ + + + K ++ Q Sbjct: 1003 QSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-- 1060 Query: 437 GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISHDR 495 LSGG + ++ +A V++LDEPT+ +D + ++ D L + +G +I+S Sbjct: 1061 -DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHH 1119 Query: 496 M 496 M Sbjct: 1120 M 1120 Score = 53.5 bits (128), Expect = 1e-07 Identities = 65/227 (28%), Positives = 103/227 (45%), Gaps = 56/227 (24%) Query: 6 IYHMAGLSKVFG--SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 I + L+KV+ S +D + + P G+LG NGAGK+T +++ G +G+A Sbjct: 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996 Query: 64 WLA-----TGFT-----VGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNELM 108 +A T + +GY PQ +D T +E++ + GV ++ E + Sbjct: 1997 TVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEI------EKV 2050 Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALC 168 N+S I S GL SL+ AD L T SGG KR+++ Sbjct: 2051 ANWS-------------IQSLGL------------SLY--ADRLAGT-YSGGNKRKLSTA 2082 Query: 169 KLLLSSPDLLLLDEPTNHLD--AETIAW--MEKYLREYSGAVLMVTH 211 L+ P L+LLDEPT +D A + W + +RE AV++ +H Sbjct: 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSH 2128 Score = 49.2 bits (117), Expect = 3e-06 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 35/210 (16%) Query: 12 LSKVF--GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69 L K+F + +D +N++FY + LG NGAGK+T L I+ G+ +G Sbjct: 934 LVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV------ 987 Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY---NELMMNYSE---KTEEEIAKLQ 123 VG E LD V++++ G+ + IL + E ++ Y++ ++ EE Sbjct: 988 LVGGKDIETNLD---AVRQSL--GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEA---- 1038 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 LE E + LH + LSGG +R++++ + +++LDEP Sbjct: 1039 ---------QLEMEAMLEDTGLHHKRNE-EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEP 1088 Query: 184 TNHLDAETIAWMEKYLREY-SG-AVLMVTH 211 T+ +D + + L +Y SG ++M TH Sbjct: 1089 TSGVDPYSRRSIWDLLLKYRSGRTIIMSTH 1118 >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional. Length = 305 Score = 55.6 bits (134), Expect = 3e-08 Identities = 53/217 (24%), Positives = 96/217 (44%), Gaps = 33/217 (15%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDK--EYNGEAW 64 +G L +++ + ++GP+G GKST LR + A ID E +G+ Sbjct: 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 Query: 65 LATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 G VG + Q P K+++ENI G K ++ + + + Sbjct: 115 YQDGVNLVELRKRVGMVFQSPN-PFPKSIRENISYG-PRKHGDINTGLLARLLGRDDKDA 172 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 E ++ + LWD EV ++ N LSGG+++R+ + + L P++ Sbjct: 173 EDELVERSLRQAALWD---EVNDRLDD--------NALGLSGGQQQRLCIARCLAVDPEV 221 Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 +L+DEP + LD + +E + E + V++VTH+ Sbjct: 222 ILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHN 258 Score = 43.7 bits (103), Expect = 1e-04 Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 44/208 (21%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRM--------------LTGDES 368 Y D + +S +P + +IGP+G GK+T L RM L G + Sbjct: 55 YGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 Query: 369 PDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGG----DDI-----VKLNGH----- 414 G V + V QS + K++ E+IS G DI +L G Sbjct: 115 YQDGVNLVELRKRVGMVFQSPNPFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDA 172 Query: 415 --EINSRAYCSAFNFKGGDQQQRIGS----LSGGQRGRVHLAKILKSGGNVILLDEPTND 468 E+ R+ A + + R+ LSGGQ+ R+ +A+ L VIL+DEP + Sbjct: 173 EDELVERSLRQAALW--DEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASA 230 Query: 469 LDTETLSALEDALENFAG--CAVIISHD 494 LD S +ED +E A V+++H+ Sbjct: 231 LDPIATSKIEDLIEELAEEYTVVVVTHN 258 >gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional. Length = 267 Score = 55.9 bits (135), Expect = 3e-08 Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 51/224 (22%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMA----GIDK-EYNGEAWLA 66 L +G K+ + I++ F + ++GP+G+GKST LR + ID G+ Sbjct: 26 LHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILY- 84 Query: 67 TGFTV--------------GYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112 G + G + Q P +K++ ENI A ++A + L Sbjct: 85 RGIDINRKEINVYEMRKHIGMVFQRPN-PFAKSIYENIT--FALERAGVKDKKVLD---- 137 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 E E + + LWD QV + LH A +LSGG+++R+ + + + Sbjct: 138 EIVETSLKQ-------AALWD-----QVK-DDLHKSA-----LTLSGGQQQRLCIARAIA 179 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 PD+LL+DEP + LD + +E+ + E Y+ +++VTH+ Sbjct: 180 VKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTHN 221 Score = 39.3 bits (92), Expect = 0.003 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 7/105 (6%) Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCAVIISH 493 +LSGGQ+ R+ +A+ + +++L+DEP + LD + LE+ + +N+ +I++H Sbjct: 163 TLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYT--IIIVTH 220 Query: 494 DRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSG 538 + R A+ AF G + ++ + KL ++ +SG Sbjct: 221 NMQQAAR-ASDYTAFFYLGDLIEYDKTRNIFTNPKLQSTNDYVSG 264 Score = 29.7 bits (67), Expect = 2.2 Identities = 13/48 (27%), Positives = 23/48 (47%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 + + K + Y + I + + I +IGP+G+GK+T R L Sbjct: 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL 66 >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 288 Score = 55.5 bits (133), Expect = 3e-08 Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 23/188 (12%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386 + R L D + ++ G +IG G+GK+TL + L G P G + VG+ V S Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSK 75 Query: 387 QSR---------------DSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGD 431 Q +S E+TV +D++ G + + A G Sbjct: 76 QKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIA-AEKLEMVGLA 134 Query: 432 Q---QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET---LSALEDALENFA 485 ++ LSGGQ RV +A IL V++LDEPT LD + + L +++ Sbjct: 135 DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194 Query: 486 GCAVIISH 493 V+++H Sbjct: 195 QTVVLVTH 202 Score = 52.8 bits (126), Expect = 2e-07 Identities = 54/215 (25%), Positives = 99/215 (46%), Gaps = 32/215 (14%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE 77 + + L DI+L + ++G G+GKST+L+ + G+ + G+ + Sbjct: 18 ASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVG----------- 66 Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 + +S T K+ I+ V K ++ ++ E S+ EE + L+D+ + + E Sbjct: 67 -DIVVSSTSKQKEIKPVRKKVGVVFQFPE-----SQLFEETV--LKDVAFGPQNFGIPKE 118 Query: 138 VQVAIESLHCPADGLNIT-------SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 I + GL LSGG+ RRVA+ +L P++L+LDEPT LD + Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 Query: 191 TIAWMEKY---LREYSGAVLMVTHDRYFLDNVTNW 222 M + + + V++VTH +D+V ++ Sbjct: 179 ARIEMMQLFESIHQSGQTVVLVTH---LMDDVADY 210 >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional. Length = 249 Score = 55.6 bits (134), Expect = 3e-08 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 52/223 (23%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGI----DKEYN 60 L +G + L INL ++GP+G GKST+LR ++ G+ + Sbjct: 9 LDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMD 68 Query: 61 GEAWLAT------GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEK 114 GE VG + Q+P ++ EN+ G+ Q I D+ K Sbjct: 69 GEDIYGNIDVADLRIKVGMVFQKPN-PFPMSIYENVAYGL-RAQGIKDK----------K 116 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 +E+ ++ + LWD EV+ + L A GL SGG+++R+ + + + Sbjct: 117 VLDEV--VERSLRGAALWD---EVK---DRLKSHAFGL-----SGGQQQRLCIARTIAME 163 Query: 175 PDLLLLDEPTNHLDAETIA------WMEKYLREYSGAVLMVTH 211 PD++L+DEPT+ LD IA ME+ + Y+ +++VTH Sbjct: 164 PDVILMDEPTSALDP--IATHKIEELMEELKKNYT--IVIVTH 202 Score = 46.4 bits (110), Expect = 2e-05 Identities = 53/206 (25%), Positives = 92/206 (44%), Gaps = 55/206 (26%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML------------TGDESPDS--- 371 Y + + +++ +P + +IGP+G GK+TL R L TG + D Sbjct: 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI 72 Query: 372 -GTIHVGE-TVCLSYVDQSRDSLEAEKTVWEDISGG------------DDIVK--LNG-- 413 G I V + + + V Q + +++E+++ G D++V+ L G Sbjct: 73 YGNIDVADLRIKVGMVFQKPNPFPM--SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAA 130 Query: 414 --HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD- 470 E+ R AF LSGGQ+ R+ +A+ + +VIL+DEPT+ LD Sbjct: 131 LWDEVKDRLKSHAF------------GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDP 178 Query: 471 --TETLSALEDAL-ENFAGCAVIISH 493 T + L + L +N+ VI++H Sbjct: 179 IATHKIEELMEELKKNYT--IVIVTH 202 >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional. Length = 272 Score = 55.0 bits (133), Expect = 5e-08 Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 55/226 (24%) Query: 11 GLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKE--Y 59 L+ +G K+ L DI++ + +GP+G GKST+LR I+ E Sbjct: 30 NLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRL 89 Query: 60 NGEAWLATGF-------TVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAILDRYNEL 107 +G+ VG + Q P K++ EN+ ++G+ ++ +LD Sbjct: 90 DGQNIYDKKVDVAELRRRVGMVFQRPN-PFPKSIYENVVYGLRLQGINNR-RVLD----- 142 Query: 108 MMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVAL 167 E E + LWD EV+ + LH A GL SGG+++R+ + Sbjct: 143 -----EAVERSLR-------GAALWD---EVK---DRLHENAFGL-----SGGQQQRLVI 179 Query: 168 CKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211 + + P++LLLDEPT+ LD + +E+ + E +++VTH Sbjct: 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225 Score = 50.8 bits (122), Expect = 9e-07 Identities = 54/218 (24%), Positives = 92/218 (42%), Gaps = 56/218 (25%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPD 370 +E + ++ Y D+ + ++S ++P + IGP+G GK+TL R D Sbjct: 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRI 83 Query: 371 SGTIHV-GETVCLSYVDQSRDSLEAE------------KTVWEDISGG------------ 405 G I + G+ + VD + L K+++E++ G Sbjct: 84 EGEIRLDGQNIYDKKVDVA--ELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVL 141 Query: 406 DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459 D+ V+ L G E+ R + +AF LSGGQ+ R+ +A+ + V Sbjct: 142 DEAVERSLRGAALWDEVKDRLHENAF------------GLSGGQQQRLVIARAIAIEPEV 189 Query: 460 ILLDEPTNDLD---TETLSALEDAL-ENFAGCAVIISH 493 +LLDEPT+ LD T + L L + VI++H Sbjct: 190 LLLDEPTSALDPISTLKIEELITELKSKYT--IVIVTH 225 >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional. Length = 329 Score = 55.1 bits (132), Expect = 5e-08 Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 45/214 (21%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID-----KEYNGEAWLATGFT-- 70 +K VL D+NL + +GP+G GKST LR + ++ + GE + T Sbjct: 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 Query: 71 -----------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 +G + Q+P ++ +N+ G I DR K E+I Sbjct: 154 KKISSLELRTRIGMVFQKPT-PFEMSIFDNVAYG-PRNNGINDR----------KILEKI 201 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 ++ + S LWD EV+ ++ +LSGG+++R+ + + + P++LL Sbjct: 202 --VEKSLKSAALWD---EVKDDLDKAG--------NALSGGQQQRLCIARAIALEPEVLL 248 Query: 180 LDEPTNHLDAETIAWMEKYLREYSG--AVLMVTH 211 +DEPT+ LD A +E+ + E ++++VTH Sbjct: 249 MDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282 Score = 48.2 bits (114), Expect = 5e-06 Identities = 50/218 (22%), Positives = 95/218 (43%), Gaps = 26/218 (11%) Query: 317 VIEAKGISKSYNDRL--LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 V E + + Y +R ++ +L+ + + IGP+G GK+T R L GT Sbjct: 80 VFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTS 139 Query: 375 HVGETVCLSYVDQSR--DSLEA--------------EKTVWEDISGGDDIVKLNGHEI-- 416 H GE L +S+ SLE E +++++++ G +N +I Sbjct: 140 HEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE 199 Query: 417 ----NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 S + ++ D + +LSGGQ+ R+ +A+ + V+L+DEPT+ LD Sbjct: 200 KIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPI 259 Query: 473 TLSALEDALENFAG--CAVIISHDRMFLDRLATHILAF 508 + +E+ + +I++H R++ + F Sbjct: 260 ATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFF 297 >gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional. Length = 274 Score = 54.6 bits (131), Expect = 6e-08 Identities = 74/285 (25%), Positives = 122/285 (42%), Gaps = 62/285 (21%) Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKI-GILGPNGAGKSTILR-------IMAGI 55 ++ + G+ +G L D++L P KI +GP+G GKST+LR ++ G Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKI-PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGA 76 Query: 56 DKE----------YNGEA-WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY 104 E Y+ + + VG + Q P K++ ENI A R Sbjct: 77 KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN-PFPKSIYENI--------AFAPRA 127 Query: 105 NELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRR 164 N N E E+ + + +W+ EV+ ++ G T+LSGG+++R Sbjct: 128 NGYKGNLDELVEDSLRR-------AAIWE---EVKDKLK-----EKG---TALSGGQQQR 169 Query: 165 VALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTHDRYFLDNVTNW 222 + + + + PD+LL+DEP + LD + +E+ E ++MVTH+ V +W Sbjct: 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADW 229 Query: 223 I----LEVD-----RGKGIPYQGNYSAYLQMKAKRMAQENREEIS 258 E+D RGK + +S QM +E RE IS Sbjct: 230 TAFFNTEIDEYGKRRGKLV----EFSPTEQMFGSPQTKEAREYIS 270 Score = 50.8 bits (121), Expect = 9e-07 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 32/191 (16%) Query: 315 HVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPDS- 371 H V E +G+ Y L + ++ K+P I+ IGP+G GK+TL R D P + Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK 77 Query: 372 --GTIHVGETVCLSYVDQSRDSLEAE--------------KTVWEDISGGDDIVKLNGHE 415 G + + + D +S++ K+++E+I+ + NG++ Sbjct: 78 VEGRLLYRDR---NIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAP---RANGYK 131 Query: 416 IN-------SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTND 468 N S + + +++ +LSGGQ+ R+ +A+ + +V+L+DEP + Sbjct: 132 GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSA 191 Query: 469 LDTETLSALED 479 LD + +E+ Sbjct: 192 LDPISTRQVEE 202 >gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 54.3 bits (131), Expect = 7e-08 Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 51/232 (21%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM-------------AGIDKEYNGEAW 64 K LDD+NL + ILG NG+GKSTI + M G+D W Sbjct: 22 EKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLW 81 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQD 124 G + Q P + T+ E E VA N EE ++ + Sbjct: 82 DIRN-KAGMVFQNPDNQIVATIVE---EDVAFGPE----------NLGIPPEEIRERVDE 127 Query: 125 IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 + G+++ H P LSGG+K+RVA+ +L P+ ++ DEPT Sbjct: 128 SLKKVGMYEYRR---------HAPH------LLSGGQKQRVAIAGILAMRPECIIFDEPT 172 Query: 185 NHLDA----ETIAWMEKYLREYSGAVLMVTHDRYFLDNV--TNWILEVDRGK 230 LD E + +++ ++Y ++++TH +++ + I+ +D GK Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITH---YMEEAVEADRIIVMDSGK 221 Score = 53.6 bits (129), Expect = 1e-07 Identities = 48/209 (22%), Positives = 92/209 (44%), Gaps = 41/209 (19%) Query: 317 VIEAKGISKSYND------RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 +I+ K +S Y +L +D+++ ++ G + ++G NG+GK+T+ + + P Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63 Query: 371 SGTIHV-GETVCLS-----------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINS 418 G ++V G V Q+ D+ V ED++ G + + + EI Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123 Query: 419 RAYCSAFNFKGGDQQQRIGS----------LSGGQRGRVHLAKILKSGGNVILLDEPTND 468 R + +++G LSGGQ+ RV +A IL I+ DEPT Sbjct: 124 RV---------DESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAM 174 Query: 469 LD----TETLSALEDALENFAGCAVIISH 493 LD E ++ +++ + + ++I+H Sbjct: 175 LDPSGRREVVNTIKELNKKYGITIILITH 203 >gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional. Length = 659 Score = 54.5 bits (131), Expect = 7e-08 Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 36/186 (19%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT----- 70 + +L+ + P + +LGP+G+GKST+L +AG G + T Sbjct: 78 IQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG---RIQGNNFTGTILANNRKP 134 Query: 71 -------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 G++ Q+ L TV+E ++ + L + S +E+I + Sbjct: 135 TKQILKRTGFVTQDDILYPHLTVRETLV-----------FCSLLRLPKSLTKQEKILVAE 183 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEP 183 +I GL E + I +SGGE++RV++ +L +P LL+LDEP Sbjct: 184 SVISELGLTKCENTI----------IGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 Query: 184 TNHLDA 189 T+ LDA Sbjct: 234 TSGLDA 239 Score = 35.2 bits (81), Expect = 0.046 Identities = 14/42 (33%), Positives = 27/42 (64%) Query: 324 SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 ++ +R +++ ++ PG I+ V+GP+G+GK+TL L G Sbjct: 75 TRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAG 116 Score = 33.7 bits (77), Expect = 0.11 Identities = 15/36 (41%), Positives = 24/36 (66%) Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT 471 I +SGG+R RV +A + ++++LDEPT+ LD Sbjct: 204 IRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDA 239 >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional. Length = 259 Score = 54.3 bits (130), Expect = 8e-08 Identities = 50/221 (22%), Positives = 101/221 (45%), Gaps = 45/221 (20%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTV 71 LS + + K ++ I++ Y + I+GP+G GKST ++ + I + E + V Sbjct: 13 LSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL---EGPVKVEGVV 69 Query: 72 GYLPQ---EPQLDLSKTVKE-------------NIIEGVAHKQAILDRYNELMMNYSEKT 115 + Q +P++++++ ++ +I E VA+ I + + + Sbjct: 70 DFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL------ 123 Query: 116 EEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS--LSGGEKRRVALCKLLLS 173 +EI ++ + LW EV+ D LN ++ LSGG+++R+ + + L Sbjct: 124 -DEI--VESALKGAALWQ---EVK----------DKLNKSALGLSGGQQQRLCIARALAI 167 Query: 174 SPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 P +LL+DEP + LD +E+ + + +VTH+ Sbjct: 168 KPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208 Score = 41.5 bits (97), Expect = 5e-04 Identities = 47/203 (23%), Positives = 88/203 (43%), Gaps = 28/203 (13%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV- 376 I+ K +S YN I+ +S + + +IGP+G GK+T + L S G + V Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN-RISELEGPVKVE 66 Query: 377 ------GETVCLSYVDQSRDSLEA----------EKTVWEDISGGDDIV----KLNGHEI 416 G+ + ++ +R + +++E+++ G I + + EI Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEI 126 Query: 417 NSRAYCSAF---NFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 A A K + +G LSGGQ+ R+ +A+ L V+L+DEP + LD Sbjct: 127 VESALKGAALWQEVKDKLNKSALG-LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIA 185 Query: 474 LSALEDALENFAG--CAVIISHD 494 +E+ + + I++H+ Sbjct: 186 TMKVEELIHSLRSELTIAIVTHN 208 >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 592 Score = 54.0 bits (130), Expect = 9e-08 Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 35/213 (16%) Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 I+ +S +Y +D L++ N++ +P G V ++G G+GK+TL +L G G I + Sbjct: 341 IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 Query: 377 -GETV-CLSY---------VDQS----RDSLEAEKTVWEDISGGD-----DIVKLNGHEI 416 G + LS+ V Q D+ A T+ DIS + V+L E+ Sbjct: 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLA--EL 458 Query: 417 NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 +R+ G+Q +LS GQ+ + LA++L +++LDE T ++D+ T A Sbjct: 459 -ARSLPDGLYTPLGEQGN---NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQA 514 Query: 477 LEDALENFAGCA--VIISHDRMFLDRLATHILA 507 ++ AL V+I+H RL+T + A Sbjct: 515 IQQALAAVREHTTLVVIAH------RLSTIVEA 541 Score = 48.6 bits (116), Expect = 4e-06 Identities = 51/189 (26%), Positives = 86/189 (45%), Gaps = 29/189 (15%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 VL +INLS + ++G G+GKST+ ++ G GE L P Sbjct: 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI---------RLDGRP 404 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWD-LETE 137 LS +V + V +L ++ + +DI + + +W LET Sbjct: 405 LSSLSHSVLRQGVAMVQQDPVVL----------ADTFLANVTLGRDISEEQ-VWQALET- 452 Query: 138 VQVAIESLHCPADGLNI------TSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191 VQ+A E DGL +LS G+K+ +AL ++L+ +P +L+LDE T ++D+ T Sbjct: 453 VQLA-ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGT 511 Query: 192 IAWMEKYLR 200 +++ L Sbjct: 512 EQAIQQALA 520 >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional. Length = 258 Score = 53.9 bits (129), Expect = 1e-07 Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 23/200 (11%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DESPDSG 372 I+ + ++ Y ++ + N+S ++P + +IGP+G GK+T R L G Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72 Query: 373 TIHV-GETVCLSYVD----QSRDSLEAEK------TVWEDISGGDDIVKLNGHEINS--- 418 + + GE + VD + + +K +++++++ G I N +++ Sbjct: 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVE 132 Query: 419 RAYCSA--FNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSA 476 A SA ++ + SLSGGQ+ R+ +A+ L +IL DEPT+ LD + + Sbjct: 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192 Query: 477 LEDALENFAG--CAVIISHD 494 +ED + N VI++H+ Sbjct: 193 IEDLIMNLKKDYTIVIVTHN 212 Score = 50.4 bits (120), Expect = 1e-06 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 20/204 (9%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRI---MAGIDKEYNGEAWLATGFTVG 72 +G K+ L ++++ ++ ++GP+G GKST +R M + K E ++ Sbjct: 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDI 81 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDR--YNELMMNYSEKTEEEIAKLQDIIDSKG 130 Y P ++L K V + +I D Y + ++K + + +++ + S Sbjct: 82 YEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGV--VENALRSAA 139 Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 LWD ET + L PA SLSGG+++R+ + + L P ++L DEPT+ LD Sbjct: 140 LWD-ETS-----DRLKSPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPI 188 Query: 191 TIAWMEKYLREYSG--AVLMVTHD 212 + A +E + +++VTH+ Sbjct: 189 STARIEDLIMNLKKDYTIVIVTHN 212 >gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 320 Score = 53.7 bits (129), Expect = 1e-07 Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 7/86 (8%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDR 213 LSGG+KRRVA+ +L P++L+ DEPT LD + M + + + V ++TH Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236 Query: 214 YFLDNVTNWILEVDRGK----GIPYQ 235 + V + ++ +D+GK G PY+ Sbjct: 237 EHVLEVADEVIVMDKGKILKTGTPYE 262 Score = 49.1 bits (117), Expect = 3e-06 Identities = 43/193 (22%), Positives = 77/193 (39%), Gaps = 34/193 (17%) Query: 314 GHVVIEAKGISKSYNDR-----LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDES 368 +++ K + ++++ + ++N+S+ I +IG +G+GK+TL G Sbjct: 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 Query: 369 PDSGTIHVGETVC---------------------------LSYVDQSRDSLEAEKTVWED 401 GTI VG+ +S V Q + + T+ +D Sbjct: 78 SKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKD 137 Query: 402 ISGGDDIVKLNGHEINSRA--YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459 I G + + E A Y + ++ LSGGQ+ RV +A IL + Sbjct: 138 IMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEI 197 Query: 460 ILLDEPTNDLDTE 472 ++ DEPT LD + Sbjct: 198 LIFDEPTAGLDPK 210 Score = 33.7 bits (77), Expect = 0.14 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query: 6 IYHMAGLSKVFGSK-----KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 I + L VF K L++I+ +F + I+G +G+GKST++ G+ K Sbjct: 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY 80 Query: 61 GEAWL 65 G + Sbjct: 81 GTIQV 85 >gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional. Length = 285 Score = 53.3 bits (128), Expect = 1e-07 Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 47/217 (21%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM---------AGIDKEYNGEAW-- 64 +G ++ LDD+++ + ++GP+G GKST LR + A ++ E Sbjct: 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNV 108 Query: 65 -------LATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 +A +G + Q+P K++ +N+ G+ + + E+ EE Sbjct: 109 YDADVDPVALRRRIGMVFQKPN-PFPKSIYDNVAYGL--------KIQGYDGDIDERVEE 159 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 + + LWD EV+ ++S GL+ LSGG+++R+ + + + P++ Sbjct: 160 SLRR-------AALWD---EVKDQLDS-----SGLD---LSGGQQQRLCIARAIAPDPEV 201 Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 +L+DEP + LD + +E + E + V++VTH+ Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238 Score = 50.6 bits (121), Expect = 9e-07 Identities = 54/217 (24%), Positives = 94/217 (43%), Gaps = 50/217 (23%) Query: 314 GHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG-----DES 368 G VIEA+ ++ Y D +D++S +P + +IGP+G GK+T R + D + Sbjct: 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAA 95 Query: 369 PDSGTIHV-GETVCLSYVD------------QSRDSLEAEKTVWEDISGG---------- 405 G + G+ V + VD Q + K+++++++ G Sbjct: 96 RVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF--PKSIYDNVAYGLKIQGYDGDI 153 Query: 406 DDIVK--LNG----HEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNV 459 D+ V+ L E+ + S + GG QQ R+ +A+ + V Sbjct: 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ------------RLCIARAIAPDPEV 201 Query: 460 ILLDEPTNDLDTETLSALEDALENFAG--CAVIISHD 494 IL+DEP + LD S +ED +E A VI++H+ Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHN 238 >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed. Length = 248 Score = 53.3 bits (128), Expect = 2e-07 Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 17/208 (8%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQE- 77 K +L +NL P I+GPNG+GKST+ +AG E + TG TV + ++ Sbjct: 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG------REDYEVTGGTVEFKGKDL 67 Query: 78 PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETE 137 +L E I + I N+ + + + Q+ +D +D + Sbjct: 68 LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSY-RGQEPLDR---FDFQDL 123 Query: 138 VQVAIESLHCPADGLNIT---SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---T 191 ++ I L P D L + SGGEK+R + ++ + P+L +LDE + LD + Sbjct: 124 MEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKI 183 Query: 192 IAWMEKYLREYSGAVLMVTHDRYFLDNV 219 +A LR+ + ++VTH + LD + Sbjct: 184 VADGVNSLRDGKRSFIIVTHYQRILDYI 211 Score = 35.9 bits (83), Expect = 0.028 Identities = 17/51 (33%), Positives = 31/51 (60%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367 ++ K + S D+ ++ L+ ++ PG + ++GPNG+GK+TL L G E Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional. Length = 251 Score = 53.1 bits (127), Expect = 2e-07 Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 31/210 (14%) Query: 16 FGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLP 75 +G+ + L I+L F ++GP+G GKST LR + ++ + Sbjct: 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI---------------- 57 Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDI---IDSKGLW 132 + ++ +K K +++ E+ M + + T + ++ + G+ Sbjct: 58 --ENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVK 115 Query: 133 DLETEVQVAIESLHCPA------DGL--NITSLSGGEKRRVALCKLLLSSPDLLLLDEPT 184 D E Q ESL A D L N + SGG+++R+ + + L P ++LLDEPT Sbjct: 116 DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175 Query: 185 NHLDAETIAWMEKYLRE--YSGAVLMVTHD 212 + LD + + +E+ L E + +MVTH+ Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHN 205 Score = 47.3 bits (112), Expect = 1e-05 Identities = 51/212 (24%), Positives = 91/212 (42%), Gaps = 31/212 (14%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD---S 371 +I AK + SY + + +S + +IGP+G GK+T R L D+ + + Sbjct: 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKIT 63 Query: 372 GTIHV-GETVCLSYVDQSRDSLEAEK----------TVWEDISGGDDIVKLNGHEI---- 416 G I G+ + S +D E +V+++++ G I + E+ Sbjct: 64 GEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR 123 Query: 417 --NSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 S + + + + + SGGQ+ R+ +A+ L V+LLDEPT+ LD + Sbjct: 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISS 183 Query: 475 SALEDALENFAGCAVIISHDRMFLDRLATHIL 506 S +E+ L + H F+ + TH L Sbjct: 184 SEIEETLME-------LKHQYTFI--MVTHNL 206 >gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional. Length = 1466 Score = 52.3 bits (125), Expect = 3e-07 Identities = 52/233 (22%), Positives = 102/233 (43%), Gaps = 52/233 (22%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGID---------------KEYNGEAW 64 ++ D+N + +G +G GKSTIL+++ + K+ N + W Sbjct: 399 EIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWW 458 Query: 65 LATGFTVGYLPQEPQLDLSKTVKENI---IEGVAHKQAILDRYNE--------------- 106 + +G + Q+P L S ++K NI + + +A+ + YNE Sbjct: 459 RSK---IGVVSQDPLL-FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSC 514 Query: 107 ---------LMMNYSEKTEE-EIAKLQDIIDSKGLWDLETEVQV-----AIESLHCPADG 151 M N ++ E E+ K I + D+ +V + A+ + G Sbjct: 515 RAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG 574 Query: 152 LNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG 204 N + LSGG+K+R+++ + ++ +P +L+LDE T+ LD ++ ++K + G Sbjct: 575 SNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG 627 Score = 47.3 bits (112), Expect = 1e-05 Identities = 21/42 (50%), Positives = 31/42 (73%) Query: 156 SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEK 197 SLSGG+K+R+A+ + LL P +LLLDE T+ LD+ + +EK Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEK 1399 Score = 38.1 bits (88), Expect = 0.007 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG----CAVIISHD 494 LSGGQ+ R+ +A+ + +++LDE T+ LD ++ ++ + N G +II+H Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAH- 638 Query: 495 RMFLDRLATHIL 506 R+ R A I Sbjct: 639 RLSTIRYANTIF 650 Score = 36.9 bits (85), Expect = 0.012 Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 SLSGGQ+ R+ +A+ L ++LLDE T+ LD+ + +E + Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 Score = 30.0 bits (67), Expect = 1.5 Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 310 GKRLGHVV-IEAKGISKSYNDRLLID---NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 GK+L + I+ K + Y+ R ++ +L+F L G +G +G GK+T+ +++ Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433 Query: 366 DESPDSGTIHVGET 379 P G I + ++ Sbjct: 434 LYDPTEGDIIINDS 447 >gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional. Length = 356 Score = 52.2 bits (126), Expect = 3e-07 Identities = 50/169 (29%), Positives = 81/169 (47%), Gaps = 22/169 (13%) Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ + + KSY +I + + G + ++GP+G GK+TL RM+ G E SG I + Sbjct: 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWI 63 Query: 377 GETVCLSYVDQ----SRD--------SLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 G V V++ RD +L +V E+++ G I + EI R +A Sbjct: 64 GGRV----VNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA 119 Query: 425 FNFKGG---DQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + D++ R LSGGQR RV + + + V L DEP ++LD Sbjct: 120 RILELEPLLDRKPR--ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166 Score = 40.2 bits (95), Expect = 0.001 Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 6/64 (9%) Query: 9 MAGLS-----KVFGSK-KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62 MAGL K + K +V+ I+L I ++GP+G GKST+LR++AG+++ +GE Sbjct: 1 MAGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGE 60 Query: 63 AWLA 66 W+ Sbjct: 61 IWIG 64 Score = 36.7 bits (86), Expect = 0.013 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWM----EKYLREYSGAVLMVTHD 212 LSGG+++RVA+ + ++ P + L DEP ++LDA+ M ++ R L VTHD Sbjct: 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHD 194 >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 271 Score = 52.3 bits (125), Expect = 3e-07 Identities = 58/241 (24%), Positives = 99/241 (41%), Gaps = 44/241 (18%) Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF 69 + L + + VL +NL F G++G NG GKST+ ++G+ + G Sbjct: 5 SDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV------ 58 Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAH-----KQAILDRYNELMMNYSEKT----EEEIA 120 L Q LD SK + + VA +Q I + + +S + E EI Sbjct: 59 ----LWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEIT 114 Query: 121 KLQD----IIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 + D ++D++ H P I LS G+K+RVA+ L+ Sbjct: 115 RRVDEALTLVDAQHF-------------RHQP-----IQCLSHGQKKRVAIAGALVLQAR 156 Query: 177 LLLLDEPTNHLDAETIAWMEKYLREYSGA---VLMVTHDRYFLDNVTNWILEVDRGKGIP 233 LLLDEPT LD M +R V++ +HD + +++ + + +G+ + Sbjct: 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT 216 Query: 234 Y 234 + Sbjct: 217 H 217 Score = 50.0 bits (119), Expect = 1e-06 Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 27/190 (14%) Query: 327 YNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVD 386 Y D ++ L+ + G++G NG GK+TLF L+G P G + + + L Y Sbjct: 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSK 69 Query: 387 QSRDSLEAE-KTVWED----ISGGD---DI------VKLNGHEINSR-----AYCSAFNF 427 + +L + TV++D I D DI + + EI R A +F Sbjct: 70 RGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF 129 Query: 428 KGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGC 487 + Q I LS GQ+ RV +A L +LLDEPT LD + + + Sbjct: 130 R----HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ 185 Query: 488 A---VIISHD 494 +I SHD Sbjct: 186 GNHVIISSHD 195 >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional. Length = 264 Score = 52.1 bits (125), Expect = 4e-07 Identities = 49/204 (24%), Positives = 96/204 (47%), Gaps = 28/204 (13%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML--TGDESP---- 369 V+ + ++ Y L + N+ +P I IGP+G GK+T+ R D P Sbjct: 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRV 68 Query: 370 DSGTIHVGETVCLSYVD----QSRDSLEAE------KTVWEDISGGDDIVKLNGH----- 414 + G+ + VD + R + + K+++++I+ G ++NG+ Sbjct: 69 EGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYG---ARINGYKGDMD 125 Query: 415 EINSRAYCSAFNF-KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 E+ R+ A + + D+ ++ G SLSGGQ+ R+ +A+ + VIL+DEP + LD Sbjct: 126 ELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185 Query: 473 TLSALEDALENFAG--CAVIISHD 494 + +E+ + +I++H+ Sbjct: 186 STLRIEELMHELKEQYTIIIVTHN 209 Score = 49.0 bits (117), Expect = 3e-06 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 55/225 (24%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGIDKE----YN 60 L+ +GS + ++ L + +GP+G GKSTILR ++ G E ++ Sbjct: 16 LNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFH 75 Query: 61 GEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSE 113 G+ A +G + Q+P K++ +NI G R N + E Sbjct: 76 GKNLYAPDVDPVEVRRRIGMVFQKPN-PFPKSIYDNIAYGA--------RINGYKGDMDE 126 Query: 114 KTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNIT--SLSGGEKRRVALCKLL 171 E + + LWD EV+ D L + SLSGG+++R+ + + + Sbjct: 127 LVERSLRQ-------AALWD---EVK----------DKLKQSGLSLSGGQQQRLCIARAI 166 Query: 172 LSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 P+++L+DEP + LD + +E+ + E Y+ +++VTH+ Sbjct: 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT--IIIVTHN 209 >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 277 Score = 52.0 bits (124), Expect = 4e-07 Identities = 53/207 (25%), Positives = 94/207 (45%), Gaps = 45/207 (21%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEY------NGEAWLATGF-----T 70 L+ ++ S + I+G NG+GKST R++ G+ +E+ +GE A Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 Query: 71 VGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSK 129 +G + Q P + TV++++ G M N EE I ++ + + + Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFG--------------MENQGIPREEMIKRVDEALLAV 128 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD- 188 + D +T PA LSGG+K+RVA+ ++ P++++LDE T+ LD Sbjct: 129 NMLDFKTRE---------PA------RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDP 173 Query: 189 ---AETIAWMEKYLREYSGAVLMVTHD 212 E + + + +Y VL +THD Sbjct: 174 TGRQEIMRVIHEIKEKYQLTVLSITHD 200 Score = 48.2 bits (114), Expect = 5e-06 Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 16/178 (8%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC---------- 381 ++ +SF + G V +IG NG+GK+T R++ G G + + GE + Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 Query: 382 LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQR-IGSLS 440 + V Q+ D+ TV +D++ G + + E+ R + D + R LS Sbjct: 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLS 142 Query: 441 GGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494 GGQ+ RV +A I+ +I+LDE T+ LD E + + + E + + I+HD Sbjct: 143 GGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200 >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 51.9 bits (124), Expect = 4e-07 Identities = 54/222 (24%), Positives = 100/222 (45%), Gaps = 48/222 (21%) Query: 12 LSKVF-GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILR-------IMAGIDKE----Y 59 L K+F G+ + D ++ + G +GP+G GKST+LR ++ G E + Sbjct: 13 LDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 Query: 60 NGEAWLATGFT-------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYS 112 G+ G +G + Q+P S ++ +N+ G+ R N + Sbjct: 73 LGQDVYGKGVDPVVVRRYIGMVFQQPN-PFSMSIFDNVAFGL--------RLNRYKGDLG 123 Query: 113 EKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLL 172 ++ + + LWD EV+ ++ GL SLSGG+++R+ + + + Sbjct: 124 DRVKHALQG-------AALWD---EVKDKLK-----VSGL---SLSGGQQQRLCIARAIA 165 Query: 173 SSPDLLLLDEPTNHLDAETIAWMEKYLREYSG--AVLMVTHD 212 + P++LLLDEP + LD +E+ + E + +VTH+ Sbjct: 166 TEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHN 207 Score = 34.6 bits (79), Expect = 0.062 Identities = 16/33 (48%), Positives = 24/33 (72%) Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 SLSGGQ+ R+ +A+ + + V+LLDEP + LD Sbjct: 149 SLSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 50.5 bits (120), Expect = 1e-06 Identities = 37/171 (21%), Positives = 60/171 (35%), Gaps = 46/171 (26%) Query: 342 PGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWED 401 PG ++ ++GP G+GKTTL R L + P G Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG----------------------------- 31 Query: 402 ISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVIL 461 ++ ++G +I G ++ S SG R R+ LA K +V++ Sbjct: 32 -----GVIYIDGEDILEEVLDQLLLIIVGGKK---ASGSGELRLRLALALARKLKPDVLI 83 Query: 462 LDEPTNDLDTETLSALEDALENFAG---------CAVIISHDRMFLDRLAT 503 LDE T+ LD E + L E ++ ++D L Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALL 134 Score = 41.2 bits (96), Expect = 8e-04 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 9/94 (9%) Query: 133 DLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETI 192 D E ++ ++ L G S SG + R+AL PD+L+LDE T+ LDAE Sbjct: 37 DGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQE 96 Query: 193 A---------WMEKYLREYSGAVLMVTHDRYFLD 217 A + E + V++ T+D L Sbjct: 97 ALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLG 130 Score = 34.3 bits (78), Expect = 0.075 Identities = 11/24 (45%), Positives = 16/24 (66%) Query: 31 PDAKIGILGPNGAGKSTILRIMAG 54 P I I+GP G+GK+T+ R +A Sbjct: 1 PGEVILIVGPPGSGKTTLARALAR 24 >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 274 Score = 50.4 bits (120), Expect = 1e-06 Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 14/171 (8%) Query: 317 VIEAKGISKSYNDRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 +I + +S SY D ++N++ + G +G+IG NG+GK+TL L G P G + Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60 Query: 376 V-GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 V G + V Q+ ++ +TV ED++ G + + L EI R + Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRA 120 Query: 424 AFNFKGGDQQQRI-GSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 + R +LSGGQ V LA IL ++ DE T+ LD ++ Sbjct: 121 LAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171 Score = 49.6 bits (118), Expect = 2e-06 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 48/226 (21%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGF------------ 69 L++INL IGI+G NG+GKST+ + G+ + G+ L +G Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV-LVSGIDTGDFSKLQGIR 76 Query: 70 -TVGYLPQEPQLD-LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 VG + Q P+ + +TV+E++ G + L + EI K D Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPEN----------LCL-----PPIEIRKRVD--- 118 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 + L E+ + P +LSGG+ + VAL +L P+ L+ DE T+ L Sbjct: 119 -RAL----AEIGLEKYRHRSP------KTLSGGQGQCVALAGILTMEPECLIFDEVTSML 167 Query: 188 DAET-IAWME--KYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGK 230 D ++ IA +E K L E ++ +TH+ L + + I+ +DRGK Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGK 212 >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional. Length = 330 Score = 50.1 bits (120), Expect = 1e-06 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 4/59 (6%) Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 SGG ++RV + LL P LL+ DEPT LD A+ + + + RE++ A++M+THD Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 Score = 30.8 bits (70), Expect = 0.91 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494 SGG R RV +A L +++ DEPT LD + ++ L + F ++I+HD Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD 221 >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 286 Score = 50.2 bits (120), Expect = 1e-06 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 17/155 (10%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS--------- 383 I +++ + G ++G G+GK+TL + + P +GT+ V + Sbjct: 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 Query: 384 ------YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAY--CSAFNFKGGDQQQR 435 V Q +S E TV +I G K+N E+ + A+ F Q Sbjct: 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQS 142 Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 +SGGQ ++ + IL ++I+LDEPT LD Sbjct: 143 PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177 Score = 47.9 bits (114), Expect = 7e-06 Identities = 46/218 (21%), Positives = 95/218 (43%), Gaps = 31/218 (14%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEP 78 + + D+N F I+G G+GKST+++ + + K G Sbjct: 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTV------------TVD 67 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGL-WDLETE 137 + ++ K+ I V + ++ ++ E + + + E EI I K +L+ Sbjct: 68 DITITHKTKDKYIRPVRKRIGMVFQFPESQL-FEDTVEREI-----IFGPKNFKMNLDEV 121 Query: 138 VQVAIESLHCPADGLNITSLS-----GGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET- 191 A L ++ S S GG+ R++A+ +L +PD+++LDEPT LD ++ Sbjct: 122 KNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSK 181 Query: 192 ---IAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEV 226 + ++ + + +++V+HD ++ V + EV Sbjct: 182 RQVMRLLKSLQTDENKTIILVSHD---MNEVARYADEV 216 >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 280 Score = 50.1 bits (120), Expect = 1e-06 Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 37/223 (16%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81 L D+NL+ + +G G+GKSTI++++ G+ G V Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV------RVD------DTL 70 Query: 82 LSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDII---DSKGLWDLETEV 138 ++ T K I+ + K ++ ++ E S+ EE + L+D+ + G+ E E Sbjct: 71 ITSTSKNKDIKQIRKKVGLVFQFPE-----SQLFEETV--LKDVAFGPQNFGVSQEEAE- 122 Query: 139 QVAIESLHCP--ADGL---NITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA---E 190 +A E L ++ L N LSGG+ RRVA+ +L P +L+LDEPT LD + Sbjct: 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRK 182 Query: 191 TIAWMEKYLREYSGAVLMVTHDRYFLDNVTN---WILEVDRGK 230 + + K L + +++VTH +D+V N ++ +++GK Sbjct: 183 ELMTLFKKLHQSGMTIVLVTH---LMDDVANYADFVYVLEKGK 222 Score = 48.6 bits (116), Expect = 4e-06 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 19/154 (12%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLS----------- 383 +++ + G IG G+GK+T+ ++L G P G++ V +T+ S Sbjct: 25 DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIR 84 Query: 384 ----YVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGS- 438 V Q +S E+TV +D++ G ++ E + A G + + Sbjct: 85 KKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAR-EKLALVGISESLFEKNP 143 Query: 439 --LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 LSGGQ RV +A IL +++LDEPT LD Sbjct: 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177 >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional. Length = 272 Score = 49.8 bits (119), Expect = 2e-06 Identities = 46/176 (26%), Positives = 68/176 (38%), Gaps = 38/176 (21%) Query: 330 RLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGD--ESPDSGTIHVGETVC-----L 382 R ++ +LS ++ PG + ++G NGAGK+TL + L GD V V L Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPL 73 Query: 383 SYVDQSRDSLEAEKTVWEDIS------GGDDIVKLN-----------GHEINSRAYCSAF 425 + +D R L + V + +IV L H A+ A Sbjct: 74 AAIDAPR--LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQ-AL 130 Query: 426 NFKGGDQQQR--IGSLSGGQRGRVHLAKIL---------KSGGNVILLDEPTNDLD 470 G + +LSGG+ RV A++L +LLDEPT LD Sbjct: 131 ALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALD 186 Score = 42.5 bits (100), Expect = 3e-04 Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG 54 + +L D++L P +LG NGAGKST+L+ +AG Sbjct: 13 HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG 49 Score = 42.1 bits (99), Expect = 3e-04 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 13/78 (16%) Query: 148 PADGLNITSLSGGEKRRVALCKLL---------LSSPDLLLLDEPTNHLDA----ETIAW 194 G ++T+LSGGE RV ++L P LLLDEPT LD + Sbjct: 137 ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDT 196 Query: 195 MEKYLREYSGAVLMVTHD 212 + + R+++ VL + HD Sbjct: 197 VRRLARDWNLGVLAIVHD 214 >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional. Length = 237 Score = 49.5 bits (118), Expect = 2e-06 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 13/163 (7%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIH 375 V++ +S Y + +S + G IV +IG NGAGKTTL L GD SG I Sbjct: 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV 63 Query: 376 V-GETV-----------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCS 423 G+ + ++ V + R + TV E+++ G + + + + Sbjct: 64 FDGKDITDWQTAKIMREAVAIVPEGRRVF-SRMTVEENLAMGGFFAERDQFQERIKWVYE 122 Query: 424 AFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPT 466 F + QR G++SGG++ + + + L S ++LLDEP+ Sbjct: 123 LFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165 Score = 40.6 bits (95), Expect = 9e-04 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 46/187 (24%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE--------- 62 +S +G + L +++L + ++G NGAGK+T+L + G + +G Sbjct: 11 VSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDIT 70 Query: 63 AWLATGF---TVGYLPQEPQLDLSKTVKENIIEG--VAHKQAILDRYNELMMNYSEKTEE 117 W V +P+ ++ TV+EN+ G A + +R + E Sbjct: 71 DWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI--------KWVYE 122 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 +L E +Q A ++SGGE++ +A+ + L+S P L Sbjct: 123 LFPRLH-----------ERRIQRA-------------GTMSGGEQQMLAIGRALMSQPRL 158 Query: 178 LLLDEPT 184 LLLDEP+ Sbjct: 159 LLLDEPS 165 >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional. Length = 549 Score = 48.7 bits (116), Expect = 4e-06 Identities = 20/44 (45%), Positives = 33/44 (75%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++N+SF++P G IVG+IG NG+GK+TL ++ G P+ GT+ + Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDI 83 Score = 30.6 bits (69), Expect = 0.99 Identities = 16/32 (50%), Positives = 25/32 (78%), Gaps = 2/32 (6%) Query: 26 NLSF-YPDAKI-GILGPNGAGKSTILRIMAGI 55 N+SF P+ +I GI+G NG+GKST+ ++AG+ Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGV 73 >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional. Length = 569 Score = 48.2 bits (115), Expect = 5e-06 Identities = 50/195 (25%), Positives = 84/195 (43%), Gaps = 56/195 (28%) Query: 18 SKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIM------AGIDKEYNG--------EA 63 L+++N + P +GI GP G+GKST+L ++ + D ++ ++ Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDS 386 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGV--AHKQAILDRYNELMMNYSEKTEEEIAK 121 W + V Q P L S TV NI G A +Q I E +A+ Sbjct: 387 WRSRLAVVS---QTPFL-FSDTVANNIALGRPDATQQEI----------------EHVAR 426 Query: 122 LQDIIDS-----KGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPD 176 L + D +G +TEV G LSGG+K+R+++ + LL + + Sbjct: 427 LASVHDDILRLPQG---YDTEV------------GERGVMLSGGQKQRISIARALLLNAE 471 Query: 177 LLLLDEPTNHLDAET 191 +L+LD+ + +D T Sbjct: 472 ILILDDALSAVDGRT 486 Score = 40.1 bits (94), Expect = 0.002 Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 7/87 (8%) Query: 277 RQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNL 336 R S + +RIR+ ++ A G +P G+ G + + + + D ++N+ Sbjct: 282 RGSAAYSRIRA---MLAEAPVVKDG--SEPVPEGR--GELDVNIRQFTYPQTDHPALENV 334 Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRML 363 +F L PG ++G+ GP G+GK+TL ++ Sbjct: 335 NFTLKPGQMLGICGPTGSGKSTLLSLI 361 Score = 28.5 bits (64), Expect = 4.0 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENF-AGCAVIISHDRMF 497 LSGGQ+ R+ +A+ L +++LD+ + +D T + L + G VIIS R+ Sbjct: 452 LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLS 511 Query: 498 LDRLATHILAFEGNGHV 514 A+ IL + +GH+ Sbjct: 512 ALTEASEILVMQ-HGHI 527 >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional. Length = 289 Score = 48.1 bits (114), Expect = 6e-06 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 19/219 (8%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79 K L++ +L+F + ++G G+GKST++++ G+ G+ VG Sbjct: 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT------IVGDYAIPAN 78 Query: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139 L K VK + + ++ ++ E + + E E++IA + + + +V Sbjct: 79 LKKIKEVKR-----LRKEIGLVFQFPEYQL-FQETIEKDIA-FGPVNLGENKQEAYKKVP 131 Query: 140 VAIESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIA 193 ++ + P D + + LSGG+KRRVAL ++ + L+LDEPT LD + I Sbjct: 132 ELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFIN 191 Query: 194 WMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGI 232 E+ +EY ++MVTH+ + + + ++ + GK I Sbjct: 192 LFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 Score = 43.8 bits (103), Expect = 1e-04 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 18/156 (11%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSL 392 ++N S + VIG G+GK+T+ ++ G ++G VG+ + + + ++ Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86 Query: 393 EAEK----------------TVWEDISGGDDIVKLNGHEINSRA--YCSAFNFKGGDQQQ 434 K T+ +DI+ G + N E + ++ Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKR 146 Query: 435 RIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 LSGGQ+ RV LA I+ GN ++LDEPT LD Sbjct: 147 SPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLD 182 >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional. Length = 261 Score = 47.0 bits (111), Expect = 1e-05 Identities = 52/232 (22%), Positives = 98/232 (42%), Gaps = 50/232 (21%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTT----LFRM--LTGDESPDS 371 I+ +S Y+ + +++ +S ++ + +IGP+G GK+T L RM L + + Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67 Query: 372 GTIHVGETVCLSYVDQSRDSLEAEK----------TVWEDISGG------------DDIV 409 + + V+ +R + +V+++++ G DDIV Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127 Query: 410 KLN------GHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLD 463 + EI + + SA + LSGGQ+ R+ +A+ L V+L+D Sbjct: 128 ESALKDADLWDEIKHKIHKSALD------------LSGGQQQRLCIARALAVKPKVLLMD 175 Query: 464 EPTNDLDTETLSALEDALENFA----GCAVIISHDRMFLDRLATHILAFEGN 511 EP LD +E +++ VI+SH+ + RL+ F+GN Sbjct: 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 Score = 46.2 bits (109), Expect = 2e-05 Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 49/198 (24%) Query: 12 LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDK-----------EYN 60 LS + ++K+L+ +++ Y I+GP+G GKST L+ + +++ E+ Sbjct: 13 LSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFF 72 Query: 61 GEAWLATGFTVGYLPQEPQLDLSK------TVKENIIEGVAHKQAILDRYNELMMNYSEK 114 + + L ++ + K +V +N+ GV ++ + K Sbjct: 73 NQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVK------------IVGWRPK 120 Query: 115 TEEEIAKLQDIIDSK----GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKL 170 E + DI++S LWD E++ +H A LSGG+++R+ + + Sbjct: 121 LE-----IDDIVESALKDADLWD---EIK---HKIHKSA-----LDLSGGQQQRLCIARA 164 Query: 171 LLSSPDLLLLDEPTNHLD 188 L P +LL+DEP LD Sbjct: 165 LAVKPKVLLMDEPCFGLD 182 >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional. Length = 326 Score = 46.7 bits (111), Expect = 2e-05 Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 58/232 (25%) Query: 12 LSKVFGSKKV----LDDINLSFYPDAKIGILGPNGAGKS-TILRIMAGIDK--------- 57 LS FG + +D I+ S +GI+G +G+GKS + L IM ID Sbjct: 9 LSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL 68 Query: 58 EYNGEAWLA---------TGFTVGYLPQEP--QLDLSKTVKENIIEGVAHKQAILDRYNE 106 E+NG+ G V + Q+P L+ TV I+E + Q Sbjct: 69 EFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQG------- 121 Query: 107 LMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNIT--SLSGGEKRR 164 ++KT + A ++ QV I PA L++ LSGG +R Sbjct: 122 ----GNKKTRRQRA-------------IDLLNQVGIPD---PASRLDVYPHQLSGGMSQR 161 Query: 165 VALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 V + + P LL+ DEPT LD A+ I + + ++ + A++++THD Sbjct: 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD 213 Score = 32.4 bits (74), Expect = 0.27 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 10/91 (10%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL------ENFAGCAVIIS 492 LSGG RV +A + +++ DEPT LD + + + L EN A V+I+ Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMA--LVLIT 211 Query: 493 HDRMFLDRLATHILAFEGNGHVEWFEGNFEE 523 HD + A I+ VE G + Sbjct: 212 HDLALVAEAAHKIIVMYAGQVVE--TGKAHD 240 Score = 28.2 bits (63), Expect = 6.2 Identities = 9/25 (36%), Positives = 19/25 (76%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKT 357 +D +S+ + G +VG++G +G+GK+ Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKS 47 >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional. Length = 269 Score = 46.3 bits (110), Expect = 2e-05 Identities = 56/209 (26%), Positives = 94/209 (44%), Gaps = 38/209 (18%) Query: 316 VVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLT--GDESPD--- 370 ++I + ++ SY + N+ +P G + +IGP+G GK+T+ R L D Sbjct: 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSL 71 Query: 371 SGTIHVGETVCLSYVDQSRDSLEAE--------------KTVWEDISGGDDIVKLNGH-- 414 G + T D D +E K+++E+I+ G I G Sbjct: 72 KGRVLFDGT---DLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMD 128 Query: 415 EINSRAYCSAFNF-KGGDQQQRIG-SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD-- 470 E+ R+ A + + D+ G SLSGGQ+ R+ +A+ + VIL+DEP + LD Sbjct: 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPI 188 Query: 471 -----TETLSALEDALENFAGCAVIISHD 494 ET+ L+ +NF VI++H+ Sbjct: 189 STLKIEETMHELK---KNFT--IVIVTHN 212 Score = 42.9 bits (101), Expect = 2e-04 Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 51/198 (25%) Query: 37 ILGPNGAGKSTILR------------------IMAGIDKEYNGEAWLATGFTVGYLPQEP 78 ++GP+G GKST+LR + G D + +G + Q+P Sbjct: 44 LIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQP 103 Query: 79 QLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEV 138 K++ ENI G R N + E E + K +WD Sbjct: 104 N-PFPKSIYENIAFGA--------RINGYTGDMDELVERSLRK-------AAVWD----- 142 Query: 139 QVAIESLHCPADGLNIT--SLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWME 196 C D LN + SLSGG+++R+ + + + P+++L+DEP + LD + +E Sbjct: 143 -------EC-KDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIE 194 Query: 197 KYLREY--SGAVLMVTHD 212 + + E + +++VTH+ Sbjct: 195 ETMHELKKNFTIVIVTHN 212 >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional. Length = 582 Score = 46.2 bits (110), Expect = 2e-05 Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 8/68 (11%) Query: 438 SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--CAVIISHDR 495 LSGGQR R+ +A+ L +++LDE T+ LDTE+ A++ AL+ +++I+H Sbjct: 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAH-- 537 Query: 496 MFLDRLAT 503 RL+T Sbjct: 538 ----RLST 541 Score = 41.9 bits (99), Expect = 5e-04 Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 151 GLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAET 191 G N LSGG+++R+A+ + LL +L+LDE T+ LD E+ Sbjct: 475 GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 Score = 37.7 bits (88), Expect = 0.008 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 2/59 (3%) Query: 318 IEAKGISKSY--NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 IE + ++ +Y + + N++FK+P G V ++G +G+GK+T+ +LT D G I Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI 400 >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional. Length = 267 Score = 45.6 bits (108), Expect = 3e-05 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 9/67 (13%) Query: 317 VIEAKGISKSYNDRL---------LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDE 367 ++E + +SK++ R + LSF L G + +IG NG+GK+TL +ML G Sbjct: 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 Query: 368 SPDSGTI 374 P SG + Sbjct: 64 EPTSGEL 70 Score = 29.8 bits (67), Expect = 1.7 Identities = 12/28 (42%), Positives = 22/28 (78%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGE 62 + I+G NG+GKST+ +++AG+ + +GE Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGE 69 >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional. Length = 895 Score = 45.7 bits (108), Expect = 3e-05 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 13/90 (14%) Query: 154 ITSLSGGEKR------RVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWMEKY-LREYS 203 I SLSGGEK RVA+ + L + LL++DEPT LD + + + +Y L++ S Sbjct: 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSS 858 Query: 204 G--AVLMVTHDRYFLDNVTNWILEVDRGKG 231 V+M++H R L +V + EV + G Sbjct: 859 DIPQVIMISHHRELL-SVADVAYEVKKSSG 887 Score = 36.8 bits (85), Expect = 0.016 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 6/55 (10%) Query: 434 QRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALE 482 + I SLSGG++ RV +A+ L + +++++DEPT LD + + L+D +E Sbjct: 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIE 851 >gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional. Length = 1470 Score = 45.2 bits (107), Expect = 5e-05 Identities = 48/201 (23%), Positives = 91/201 (45%), Gaps = 51/201 (25%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG------IDKEYNGEAWLATGFT--- 70 ++L ++ +F P ++G +GAGK+T++ ++AG I+ + +GF Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIR-----ISGFPKKQ 948 Query: 71 ------VGYLPQ----EPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120 GY Q PQ+ TV+E++I Y+ + E ++EE Sbjct: 949 ETFARISGYCEQNDIHSPQV----TVRESLI------------YSAFLRLPKEVSKEEKM 992 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGL-NITSLSGGEKRRVALCKLLLSSPDLLL 179 D E V +++L GL +T LS +++R+ + L+++P ++ Sbjct: 993 MFVD----------EVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIF 1042 Query: 180 LDEPTNHLDAETIAWMEKYLR 200 +DEPT+ LDA A + + +R Sbjct: 1043 MDEPTSGLDARAAAIVMRTVR 1063 Score = 31.4 bits (71), Expect = 0.69 Identities = 52/203 (25%), Positives = 85/203 (41%), Gaps = 23/203 (11%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAG-IDKE--------YNGEAW--LATGF 69 +L D + P +LGP +GK+T+L +AG +D YNG Sbjct: 180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRK 239 Query: 70 TVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRY---NELMMNYSEK---TEEEIAKLQ 123 T Y+ Q TVKE + + A Q + RY +EL + E E+ Sbjct: 240 TSAYISQNDVHVGVMTVKETL-DFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFM 298 Query: 124 DIIDSKGL-WDLETEVQVAIESLHCPADGL----NITSLSGGEKRRVALCKLLLSSPDLL 178 +G+ L T+ + I L D + I +SGG+K+RV ++++ L Sbjct: 299 KATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTL 358 Query: 179 LLDEPTNHLDAETIAWMEKYLRE 201 +DE + LD+ T + K L++ Sbjct: 359 FMDEISTGLDSSTTYQIVKCLQQ 381 Score = 30.2 bits (68), Expect = 1.3 Identities = 14/35 (40%), Positives = 22/35 (62%) Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD 470 + LS QR R+ +A L + ++I +DEPT+ LD Sbjct: 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 Score = 30.2 bits (68), Expect = 1.5 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%) Query: 329 DRL-LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 DRL L+ ++ PG + ++G +GAGKTTL +L G Sbjct: 891 DRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG 928 Score = 27.9 bits (62), Expect = 7.7 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 GD+ R +SGGQ+ RV +++ + +DE + LD+ T Sbjct: 330 GDEMIR--GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSST 371 >gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein. Length = 1394 Score = 44.7 bits (106), Expect = 6e-05 Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 52/211 (24%) Query: 6 IYHMAGLSKVFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTIL-----RIMAGI- 55 I+H L+ KK +L++++ P ++G +GAGK+T+L R+ G+ Sbjct: 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVI 818 Query: 56 ---DKEYNGEAWLATGF--TVGYLPQEPQLDL---SKTVKENIIEGVAHKQAILDRYNEL 107 D+ NG L + F ++GY+ Q+ DL + TV+E++ A L + + Sbjct: 819 TGGDRLVNGRP-LDSSFQRSIGYVQQQ---DLHLPTSTVRESLR-----FSAYLRQPKSV 869 Query: 108 MMNYSEKTE--EEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKR-R 164 SEK E EE+ KL LE E A + P +GLN+ E+R R Sbjct: 870 SK--SEKMEYVEEVIKL-----------LEME-SYADAVVGVPGEGLNV------EQRKR 909 Query: 165 VALCKLLLSSPDLLL-LDEPTNHLDAETIAW 194 + + L++ P LLL LDEPT+ LD++T AW Sbjct: 910 LTIGVELVAKPKLLLFLDEPTSGLDSQT-AW 939 Score = 38.2 bits (89), Expect = 0.006 Identities = 59/277 (21%), Positives = 97/277 (35%), Gaps = 66/277 (23%) Query: 230 KGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYE 289 KG +G + + KR + E S + E ++ S Sbjct: 694 KGAKQKGEILVFRRGSLKRA--KKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDM 751 Query: 290 ELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVI 349 E H N + + K R++++N+ + PG + ++ Sbjct: 752 EKESGEDIFHWRNLTYEVKIKK----------------EKRVILNNVDGWVKPGTLTALM 795 Query: 350 GPNGAGKTTLFRMLTGDESPDSGTIHVGETVC------------LSYVDQS--------- 388 G +GAGKTTL +L E +G I G+ + + YV Q Sbjct: 796 GASGAGKTTLLNVLA--ERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853 Query: 389 RDSLE--------AEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLS 440 R+SL + E + ++++KL E +Y A G G L+ Sbjct: 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME----SYADAVVGVPG-----EG-LN 903 Query: 441 GGQRGR----VHLAKILKSGGNVILLDEPTNDLDTET 473 QR R V L K ++ LDEPT+ LD++T Sbjct: 904 VEQRKRLTIGVELVAKPKL---LLFLDEPTSGLDSQT 937 Score = 35.9 bits (83), Expect = 0.026 Identities = 33/170 (19%), Positives = 60/170 (35%), Gaps = 41/170 (24%) Query: 342 PGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWED 401 PG + V+G G+G +TL + + ++ H+G ++Y + + ++ Sbjct: 86 PGELTVVLGRPGSGCSTLLKTIAS----NTDGFHIGVEGVITYDGITPEEIKKHYRGDVV 141 Query: 402 ISGGDDI-------------------VKLNGHEINSRAYCS--------------AFNFK 428 + D+ + ++ Y N K Sbjct: 142 YNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTK 201 Query: 429 GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALE 478 G+ R +SGG+R RV +A+ G + D T LD+ T ALE Sbjct: 202 VGNDFVR--GVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSAT--ALE 247 Score = 35.5 bits (82), Expect = 0.032 Identities = 41/185 (22%), Positives = 67/185 (36%), Gaps = 62/185 (33%) Query: 37 ILGPNGAGKSTILRIMAG----------------------IDKEYNGEAWLATGFTVGYL 74 +LG G+G ST+L+ +A I K Y G+ V Y Sbjct: 92 VLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGD--------VVYN 143 Query: 75 PQE----PQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKG 130 + P L TV E + + A + +R + + + EE AK Sbjct: 144 AETDVHFPHL----TVGETL-DFAARCKTPQNRPDGV-------SREEYAKH-------- 183 Query: 131 LWDLETEVQVAIESL-HCPADGLN---ITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNH 186 +V +A L H + + +SGGE++RV++ + L + D T Sbjct: 184 ----IADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRG 239 Query: 187 LDAET 191 LD+ T Sbjct: 240 LDSAT 244 >gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional. Length = 547 Score = 44.6 bits (106), Expect = 6e-05 Identities = 56/211 (26%), Positives = 84/211 (39%), Gaps = 41/211 (19%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPP-------GGIVGVIGPNGAGKTTLFRMLTGDESPD 370 +E + ++ +Y D F + P G ++ +IG NG+GK+TL +LTG P Sbjct: 323 LELRNVTFAYQDN------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQ 376 Query: 371 SGTIHV-GETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSAFNF-- 427 SG I + G+ V + R A V+ D D ++ G N Sbjct: 377 SGEILLDGKPVTAEQPEDYRKLFSA---VFTDFHLFDQLLGPEGKPANPALVEKWLERLK 433 Query: 428 ---KGGDQQQRIG--SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLD--------TETL 474 K + RI LS GQ+ R+ L L +++LLDE D D L Sbjct: 434 MAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLL 493 Query: 475 SALEDALENFAGCAVI-ISHDRMFL---DRL 501 L++ G + ISHD + DRL Sbjct: 494 PLLQE-----MGKTIFAISHDDHYFIHADRL 519 Score = 34.2 bits (79), Expect = 0.098 Identities = 14/28 (50%), Positives = 18/28 (64%) Query: 155 TSLSGGEKRRVALCKLLLSSPDLLLLDE 182 LS G+K+R+AL L D+LLLDE Sbjct: 448 LKLSKGQKKRLALLLALAEERDILLLDE 475 >gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional. Length = 880 Score = 44.3 bits (105), Expect = 7e-05 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 11/70 (15%) Query: 153 NITSLSGGEK------RRVALCKLLLSSPDLLLLDEPTNHLDAET----IAWMEKYLREY 202 +T LSGGE+ R+AL L + LL+LDEPT LD E + ME+YLR+ Sbjct: 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKI 844 Query: 203 SGAVLMVTHD 212 V++V+HD Sbjct: 845 P-QVIIVSHD 853 >gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. Length = 382 Score = 44.4 bits (105), Expect = 8e-05 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 10/86 (11%) Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG----C 487 ++ G LSGG + RV LA+ +++L+DEP + LD + L+D L Sbjct: 158 ADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKT 217 Query: 488 AVIISHDRMFLD---RLATHILAFEG 510 + +SHD LD ++ I EG Sbjct: 218 IIFVSHD---LDEALKIGNRIAIMEG 240 Score = 34.8 bits (80), Expect = 0.056 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 LSGG ++RV L + D+LL+DEP + LD ++ L + + ++ V+HD Sbjct: 165 LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD 224 >gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional. Length = 327 Score = 44.2 bits (105), Expect = 9e-05 Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 10/71 (14%) Query: 314 GHVVIEAKGISKSYN--------DRLL--IDNLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 +++A + K Y +RL+ +D +SF L G + V+G +G GK+TL R+L Sbjct: 2 QQPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLL 61 Query: 364 TGDESPDSGTI 374 T E+P G + Sbjct: 62 TMIETPTGGEL 72 Score = 38.8 bits (91), Expect = 0.003 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 158 SGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 SGG+++R+A+ + L+ PD+++ DEP + LD A+ + M +E + + ++HD Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 Score = 38.0 bits (89), Expect = 0.006 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 440 SGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494 SGGQR R+ +A+ L +V++ DEP + LD + L+ + D + V ISHD Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHD 214 >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. Length = 230 Score = 43.5 bits (103), Expect = 1e-04 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHD 212 LSGG +RV + LL P L+ DEPT LD A + K LRE + +L++THD Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185 Score = 38.1 bits (89), Expect = 0.006 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAVIISHD 494 LSGG RV +A L ++ DEPT DLD L L + + F ++I+HD Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185 Query: 495 RMFLDRLA 502 + R+A Sbjct: 186 LGVVARIA 193 >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. Length = 555 Score = 42.6 bits (100), Expect = 3e-04 Identities = 46/187 (24%), Positives = 75/187 (40%), Gaps = 28/187 (14%) Query: 336 LSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQSRDSLEA 394 + ++ G IV ++G NG GK+TL ++ G P G I + G V D RD Sbjct: 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFS- 419 Query: 395 EKTVWEDISGGDDIVKLNGHE----INSRAYCSAFNFKGGDQQQRIG-----SLSGGQRG 445 ++ D DD++ + E N++ Y + + G +LS GQ+ Sbjct: 420 --AIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477 Query: 446 RVHLAKILKSGGNVILLDEPTNDLD--------TETLSALEDALENFAGCAVIISHDRMF 497 R+ L ++L DE D D E L L+ + +IISHD + Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTI----IIISHDDQY 533 Query: 498 L---DRL 501 D++ Sbjct: 534 FELADQI 540 Score = 41.5 bits (97), Expect = 6e-04 Identities = 50/209 (23%), Positives = 83/209 (39%), Gaps = 47/209 (22%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLD 81 L I+L + I+G NG GKST+ ++ G+ Y+PQE ++ Sbjct: 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL-----------------YIPQEGEI- 399 Query: 82 LSKTVKENIIEGVAHKQAILDRYNELMM----------NYSEKTEEEIAKLQDIIDSKGL 131 +++G A D Y +L + E E A L + + L Sbjct: 400 --------LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNA--QQYL 449 Query: 132 WDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA-- 189 LE +V IE T+LS G+++R+AL L +LL DE D Sbjct: 450 QRLEIADKVKIEDGGFS----TTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505 Query: 190 ETIAWMEKY--LREYSGAVLMVTH-DRYF 215 + + E L+ +++++H D+YF Sbjct: 506 KRFFYEELLPDLKRQGKTIIIISHDDQYF 534 >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional. Length = 264 Score = 41.7 bits (98), Expect = 5e-04 Identities = 16/42 (38%), Positives = 28/42 (66%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +D++S K G ++G++G NG+GK+TL ++ G SP G + Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV 81 Score = 35.2 bits (81), Expect = 0.044 Identities = 18/41 (43%), Positives = 25/41 (60%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62 LDDI+L Y IG++G NG+GKST+ I+ G G+ Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK 80 >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional. Length = 400 Score = 40.4 bits (94), Expect = 0.001 Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 44/226 (19%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++E G+S L + + S + G I ++G +G+GK+T+ R+L P G + + Sbjct: 34 ILEKTGLS------LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLI 87 Query: 377 GETVCLSYVDQSRDSLEAEK--------------TVWEDISGGDDIVKLNGHEINSRAYC 422 D + +K TV ++ + G ++ +N E +A Sbjct: 88 DGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKAL- 146 Query: 423 SAFNFKGGDQQQRIG----------SLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 D +++G LSGG R RV LA+ L +++L+DE + LD Sbjct: 147 --------DALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPL 198 Query: 473 TLSALEDALENFAG----CAVIISHDRMFLDRLATHILAFEGNGHV 514 + ++D L V ISHD R+ I A NG V Sbjct: 199 IRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRI-AIMQNGEV 243 Score = 40.4 bits (94), Expect = 0.001 Identities = 55/225 (24%), Positives = 94/225 (41%), Gaps = 35/225 (15%) Query: 3 RKFIYHMAGLSKVFGSKKVLDDINLSF-YPDAKIGI--------LGPNGAGKSTILRIMA 53 R F Y GLSK +++L+ LS DA + I +G +G+GKST++R++ Sbjct: 20 RAFKYIEQGLSK----EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLN 75 Query: 54 GIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVA--HKQAILDRYNELMMNY 111 + + G+ L G + + ++ + + + A +LD M Sbjct: 76 RLIEPTRGQV-LIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA 134 Query: 112 SEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLL 171 EE K D + GL + H D LSGG ++RV L + L Sbjct: 135 GINAEERREKALDALRQVGLENYA----------HSYPD-----ELSGGMRQRVGLARAL 179 Query: 172 LSSPDLLLLDEPTNHLDAETIAWME----KYLREYSGAVLMVTHD 212 +PD+LL+DE + LD M+ K ++ ++ ++HD Sbjct: 180 AINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224 >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional. Length = 331 Score = 40.1 bits (94), Expect = 0.001 Identities = 50/219 (22%), Positives = 93/219 (42%), Gaps = 58/219 (26%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE-AWLATGFT-------- 70 K +D + L Y +G++G +G GKST R + G+ K +GE AWL Sbjct: 35 KAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWR 94 Query: 71 -----VGYLPQEP--QLDLSKTVKENIIEGVA------HKQAILDRYNELMMNYSEKTEE 117 + + Q+P L+ T+ E I E + +Q + DR +M+ Sbjct: 95 AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMML-------- 146 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 ++ L ++I+ P + SGG+ +R+ + + L+ P L Sbjct: 147 KVGLLPNLINRY------------------PHE------FSGGQCQRIGIARALILEPKL 182 Query: 178 LLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 ++ DEP + LD A+ + +++ RE +++ + HD Sbjct: 183 IICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHD 221 Score = 32.4 bits (74), Expect = 0.30 Identities = 12/33 (36%), Positives = 21/33 (63%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 +D ++ +L G +GV+G +G GK+T R + G Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIG 69 >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional. Length = 330 Score = 39.8 bits (93), Expect = 0.002 Identities = 53/235 (22%), Positives = 90/235 (38%), Gaps = 73/235 (31%) Query: 17 GSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLAT--------- 67 G K +D ++++ G++G +G+GKS I + + G+ K+ W T Sbjct: 18 GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKD----NWRVTADRMRFDDI 73 Query: 68 --------------GFTVGYLPQEPQ--LDLSKTVKENIIE---GVAHKQAILDRYNELM 108 G V + QEPQ LD S+ V +++ G +K R+ Sbjct: 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFG--- 130 Query: 109 MNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPA--DGLNITS-----LSGGE 161 W AIE LH D + L+ GE Sbjct: 131 -----------------------WRKRR----AIELLHRVGIKDHKDAMRSFPYELTEGE 163 Query: 162 KRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----REYSGAVLMVTHD 212 ++V + L + P LL+ DEPTN ++ T A + + L + + +L+++HD Sbjct: 164 CQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHD 218 >gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional. Length = 254 Score = 38.5 bits (90), Expect = 0.004 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 157 LSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD----AETIAWMEKYLREYSGAVLMVTHD 212 +SGG +R+ + LL ++ DEPT LD A + +E +++ + +L+VTHD Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 Score = 37.0 bits (86), Expect = 0.012 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%) Query: 439 LSGGQRGRVHLAKILKSGGNVILLDEPTNDLD----TETLSALEDALENFAGCAVIISHD 494 +SGG R+ +A L I+ DEPT DLD L LE ++ A ++++HD Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHD 200 Query: 495 RMFLDRLATHILAFEGNGHVE 515 + RLA + VE Sbjct: 201 MGVVARLADDVAVMSHGRIVE 221 >gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional. Length = 1809 Score = 38.3 bits (89), Expect = 0.005 Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 29/189 (15%) Query: 154 ITSLSGGEKRRVALCKLLLS--SPDLLLLDEPTNHL---DAETIAWMEKYLREYSGAVLM 208 + +LSGGE+ R AL K L + +LDEP+ L D + + K LR+ VL+ Sbjct: 474 LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533 Query: 209 VTHDRYFLDNVTNWILEVDRGKGI-----PYQGNYSAYLQMKAKRMAQENREEISRQKAI 263 V HD + ++ + I+++ G GI + G+ +L A+ R+E++ Sbjct: 534 VEHDEQMI-SLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQELTIPIPE 592 Query: 264 ERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGI 323 +R + SKA + ++L I +P+G+ + G Sbjct: 593 KRTN------SLGTLTLSKATKHNLKDLT------------ISLPLGRLTVVTGVSGSGK 634 Query: 324 SKSYNDRLL 332 S ND L+ Sbjct: 635 SSLINDTLV 643 Score = 37.5 bits (87), Expect = 0.009 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 12/98 (12%) Query: 151 GLNITSLSGGEKRRVAL-CKLLLSS--PDLLLLDEPTNHLDAETIAWMEKYLRE--YSG- 204 G ++SLSGGE +R+ L +LL S P L +LDEPT L I + L+ + G Sbjct: 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 Query: 205 AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYL 242 V+++ H+ + + V +++LE+ P GN YL Sbjct: 864 TVVIIEHNMHVV-KVADYVLELG-----PEGGNLGGYL 895 Score = 37.1 bits (86), Expect = 0.012 Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 151 GLNITSLSGGEKRRVALCKLLL---SSPDLLLLDEPTNHLDAETIAWMEKYLREY--SG- 204 G N++SLS EK + + K L P L LLDE LD + + + LR G Sbjct: 1694 GQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGH 1753 Query: 205 AVLMVTHDRYFLDNVTNWILEVDRGKG 231 +V+ + HD L I E+ G G Sbjct: 1754 SVIYIDHDPALLKQADYLI-EMGPGSG 1779 Score = 33.3 bits (76), Expect = 0.17 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 438 SLSGGQRGRVHLAKILKSGG---NVILLDEPTNDLDTETLSALEDALENFA--GCAVIIS 492 SLSGG+ R+ LA L + + +LDEPT L T + AL L++ G V+I Sbjct: 809 SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII 868 Query: 493 HDRMFLDRLATHIL 506 M + ++A ++L Sbjct: 869 EHNMHVVKVADYVL 882 Score = 32.9 bits (75), Expect = 0.25 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 8/74 (10%) Query: 436 IGSLSGGQRGRVHLAKILKS--GGNVILLDEPTNDL---DTETLSALEDALENFAGCAVI 490 + +LSGG++ R LAK L + G +LDEP+ L DT L + L + ++ Sbjct: 474 LATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLL 533 Query: 491 ISHD-RM--FLDRL 501 + HD +M DR+ Sbjct: 534 VEHDEQMISLADRI 547 Score = 31.7 bits (72), Expect = 0.53 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 8/53 (15%) Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSG-GNVI-LLDEPTNDL---DTETLSAL 477 G +Q +LS G+ R+HLAK + S ++I LL++P + L D TL L Sbjct: 1382 GQEQD---TLSDGEHYRLHLAKKISSNLTDIIYLLEDPLSGLHPQDAPTLLQL 1431 >gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. Length = 1179 Score = 37.3 bits (87), Expect = 0.009 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 7/40 (17%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKT 357 +E G KS+ D I+ F GI G++GPNG GK+ Sbjct: 5 LELAGF-KSFADPTTIN---F---DKGITGIVGPNGCGKS 37 Score = 29.3 bits (66), Expect = 2.4 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49 ++ G K D ++F GI+GPNG GKS I+ Sbjct: 6 ELAGFKSFADPTTINF-DKGITGIVGPNGCGKSNIV 40 Score = 27.3 bits (61), Expect = 9.0 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 10/69 (14%) Query: 153 NITSLSGGEKRRVALCKLLLS------SPDLLLLDEPTNHLDAETIAWMEKYLREYSGAV 206 N++ LSGGEK AL LL + +P +LDE LD + L+E+S Sbjct: 1086 NLSLLSGGEKALTAL-ALLFAIFKVKPAP-FCILDEVDAPLDDANVERFANLLKEFSKNT 1143 Query: 207 --LMVTHDR 213 +++TH++ Sbjct: 1144 QFIVITHNK 1152 >gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 924 Score = 36.5 bits (85), Expect = 0.015 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Query: 151 GLNITSLSGGEKRRVALCKLLL---SSPDLLLLDEPTNHLDAETIA 193 G T+LSGGE +R+ L K L + L +LDEPT L + I Sbjct: 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIK 868 Score = 35.8 bits (83), Expect = 0.031 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 12/114 (10%) Query: 435 RIGSLSGGQRGRVHLAKILKSG--GNVILLDEPTNDL---DTETLSALEDALENFAGCAV 489 G+LSGG+ R+ LA + SG G + +LDEP+ L D E L L + + Sbjct: 484 AAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVI 543 Query: 490 IISHDRMFLDRLATHIL-----AFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSG 538 ++ HD + R A +++ A G V G EE + S + + LSG Sbjct: 544 VVEHDEETI-RAADYVIDIGPGAGIHGGEVV-ASGTPEEILANPDSLTGQYLSG 595 Score = 34.2 bits (79), Expect = 0.084 Identities = 48/215 (22%), Positives = 83/215 (38%), Gaps = 59/215 (27%) Query: 154 ITSLSGGEKRRVALCKLLLS--SPDLLLLDEPT-------NHLDAETIAWMEKYLREYSG 204 +LSGGE +R+ L + S + L +LDEP+ N T+ K LR+ Sbjct: 485 AGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTL----KRLRDLGN 540 Query: 205 AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIE 264 V++V HD + +++ +D G P G + + +A EEI Sbjct: 541 TVIVVEHDEETI-RAADYV--IDIG---PGAGIHGGEV------VASGTPEEI------- 581 Query: 265 RERDWIVSSPKARQSKSKARIRSYEELVESAAHRHPGNAQIIIPVGKRLGHVVIEAKGIS 324 A + S ++ +E R PGN + + G + Sbjct: 582 ----------LANPDSLTGQYLSGKKKIEVPKERRPGNGKFLTLKG-------------A 618 Query: 325 KSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTL 359 + N + N++ +P G + G +G+GK+TL Sbjct: 619 RENN----LKNITVSIPLGLFTCITGVSGSGKSTL 649 Score = 34.2 bits (79), Expect = 0.095 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Query: 438 SLSGGQRGRVHLAKIL--KSGGNVI-LLDEPTNDLDTETLSALEDALENFAG---CAVII 491 +LSGG+ R+ LAK L +S G + +LDEPT L + + L + L+ V+I Sbjct: 828 TLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 Query: 492 SH 493 H Sbjct: 888 EH 889 Score = 28.1 bits (63), Expect = 6.2 Identities = 9/27 (33%), Positives = 17/27 (62%) Query: 22 LDDINLSFYPDAKIGILGPNGAGKSTI 48 L +I++ D + I G +G+GKS++ Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38 >gnl|CDD|185099 PRK15177, PRK15177, Vi polysaccharide export ATP-binding protein VexC; Provisional. Length = 213 Score = 34.7 bits (79), Expect = 0.061 Identities = 15/42 (35%), Positives = 26/42 (61%) Query: 331 LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 +++D F + +G++ G+GKTTL R+L G ++PD G Sbjct: 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG 42 Score = 31.2 bits (70), Expect = 0.63 Identities = 15/42 (35%), Positives = 23/42 (54%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE 62 VLD + IGIL G+GK+T+ R++ G+D G+ Sbjct: 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 >gnl|CDD|129694 TIGR00606, rad50, rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1311 Score = 33.9 bits (77), Expect = 0.11 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 18/90 (20%) Query: 428 KGGDQQQRIGSLSGGQRG------RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL 481 KG G S GQ+ R+ LA+ +I LDEPT +LD E + +L AL Sbjct: 1189 KGDTALDMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHAL 1248 Query: 482 ----------ENFAGCAVIISHDRMFLDRL 501 NF ++I+HD F++ L Sbjct: 1249 VEIIKSRSQQRNFQ--LLVITHDEDFVELL 1276 Score = 31.6 bits (71), Expect = 0.50 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL--------REYSGAVLMVTHDRYF 215 R+AL + + ++ LDEPT +LD E I + L ++ + +L++THD F Sbjct: 1213 RLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDF 1272 Query: 216 LDNVT 220 ++ + Sbjct: 1273 VELLG 1277 >gnl|CDD|183990 PRK13351, PRK13351, elongation factor G; Reviewed. Length = 687 Score = 32.6 bits (75), Expect = 0.24 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Query: 346 VGVIGPNGAGKTTLF-RML-TGDESPDSGTIHVGETVCLSYVDQSRD 390 +G++ AGKTTL R+L + G + G TV ++ Q ++ Sbjct: 11 IGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVT-DWMPQEQE 56 >gnl|CDD|183705 PRK12727, PRK12727, flagellar biosynthesis regulator FlhF; Provisional. Length = 559 Score = 32.7 bits (74), Expect = 0.25 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 8/36 (22%) Query: 331 LLIDNLSFKLP--------PGGIVGVIGPNGAGKTT 358 L++ LS +LP GG++ ++GP GAGKTT Sbjct: 330 LMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTT 365 >gnl|CDD|180056 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional. Length = 854 Score = 32.4 bits (75), Expect = 0.31 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 9/39 (23%) Query: 24 DINLSFYPDAKIGIL-GPNGAGKSTILR------IMAGI 55 D +L + ++ ++ GPN AGKST +R ++A I Sbjct: 600 DCDLD--EERRLLLITGPNMAGKSTYMRQVALIVLLAQI 636 >gnl|CDD|181948 PRK09554, feoB, ferrous iron transport protein B; Reviewed. Length = 772 Score = 32.4 bits (74), Expect = 0.31 Identities = 12/20 (60%), Positives = 15/20 (75%) Query: 346 VGVIGPNGAGKTTLFRMLTG 365 +G+IG +GKTTLF LTG Sbjct: 6 IGLIGNPNSGKTTLFNQLTG 25 >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 1042 Score = 31.5 bits (71), Expect = 0.51 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 10/111 (9%) Query: 341 PPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWE 400 G I + G GAGKTTL +T E + + S A + E Sbjct: 24 ALGPIFLICGKTGAGKTTLLDAITYALYGKLPRR--SEVIRSLNSLYAAPSEAAFAEL-E 80 Query: 401 DISGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAK 451 G K+ R + + +Q +++ RGR+ AK Sbjct: 81 FSLGT----KIYR---VHRTLRCTRSHRKTEQPEQLYLEQKKGRGRILAAK 124 Score = 27.6 bits (61), Expect = 7.4 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 14/90 (15%) Query: 431 DQQQR-IGSLSGGQRGRVH------LAKILKSGGNVIL----LDEPTNDLDTETLSALED 479 R +LSGG+ LA +L + G +L +DE LD ++L Sbjct: 942 TGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIG 1001 Query: 480 ALE--NFAGCAV-IISHDRMFLDRLATHIL 506 L+ + IISH F +R+ IL Sbjct: 1002 ILDAIREGSKMIGIISHVPEFRERIPHRIL 1031 >gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional. Length = 349 Score = 31.7 bits (72), Expect = 0.57 Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 341 PPGGIVGVIGPNGAGKTTL 359 P G+ V+G N AGKT L Sbjct: 21 FPPGVTAVVGENAAGKTNL 39 >gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed. Length = 943 Score = 31.2 bits (72), Expect = 0.63 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 3/31 (9%) Query: 439 LSGGQRGRVHLAKIL--KSGGNVI-LLDEPT 466 LSGG+ RV LAK L +S G + +LDEPT Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 Score = 31.2 bits (72), Expect = 0.71 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%) Query: 151 GLNITSLSGGEKRRVALCKLLLSSPD---LLLLDEPT 184 G T+LSGGE +RV L K L L +LDEPT Sbjct: 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPT 861 >gnl|CDD|130430 TIGR01363, strep_his_triad, streptococcal histidine triad protein. This model represents the N-terminal half of a family of Streptococcal proteins that contain a signal peptide and then up to five repeats of a region that includes a His-X-X-His-X-His (histidine triad) motif. Three repeats are found in the seed alignment. Members of this family from Streptococcus pneumoniae are suggested to cleave human C3, and the member PhpA has been shown in vaccine studies to be a protective antigen in mice. Length = 348 Score = 31.1 bits (70), Expect = 0.68 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query: 225 EVDRGKGIPYQGNYSAYLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKAR 284 E+ G I G Y YL+ A +EEI+RQK E ++ S + + ++AR Sbjct: 120 EIKGGYVIKVNGKYYVYLKDAAHADNIRTKEEIARQKQ-EGSKEAKEKSKREDAAVAEAR 178 >gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed. Length = 668 Score = 31.3 bits (72), Expect = 0.76 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 12/51 (23%) Query: 349 IGPNGAGKTTLF-RML--TGDESPDSGTIHVGETVCLSYVDQSRDSLEAEK 396 +G +GAGKTTL +L TG G + G T D + E+ Sbjct: 1 VGHSGAGKTTLTEAILFYTG-AIHRIGEVEDGTTTM--------DFMPEER 42 >gnl|CDD|179652 PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional. Length = 401 Score = 31.1 bits (71), Expect = 0.81 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%) Query: 513 HVEWFEGNFEEYEKDKLS 530 H+ W G+FE Y K KL Sbjct: 165 HLSW-HGSFENYVKAKLK 181 >gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional. Length = 1047 Score = 30.9 bits (70), Expect = 0.89 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%) Query: 438 SLSGGQRGRVHLAKIL--------KSGGNVILLDEPTNDLDTETLSALEDALE--NFAGC 487 +LSGG+ V LA L K+ + + LDE LD+ETL DAL+ N +G Sbjct: 949 TLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGK 1008 Query: 488 AV-IISHDRMFLDRLATHILAFEGNG 512 + +ISH +R+ I + NG Sbjct: 1009 TIGVISHVEAMKERIPVQIKVKKING 1034 Score = 27.5 bits (61), Expect = 8.7 Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 344 GIVGVIGPNGAGKTTL 359 G+ + GP GAGKTTL Sbjct: 31 GLFAITGPTGAGKTTL 46 >gnl|CDD|132639 TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. Length = 421 Score = 30.8 bits (70), Expect = 0.96 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 23/141 (16%) Query: 230 KGIPYQGNYSAYL-QMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSY 288 P N S+Y ++ K R+ I+ + I + S + ++ K + Sbjct: 82 NNTPSAANISSYARIVREKAKE---RKLIAACQRIID----LACSDGGQTAEQK--VEEA 132 Query: 289 EELVESAAHRHPGNAQIIIPVGKRLGHVVIEAK----------GISKSYNDRLLIDNLSF 338 + + + G + + G+ L VV + G+S +D L+ Sbjct: 133 QAALLALTGMSDGQERGFVTFGEVLEDVVRDLDKRFNPKGELTGLSTGLPK---LDRLTN 189 Query: 339 KLPPGGIVGVIGPNGAGKTTL 359 L G ++ + GKTTL Sbjct: 190 GLVKGDLIVIGARPSMGKTTL 210 >gnl|CDD|180329 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional. Length = 423 Score = 30.6 bits (70), Expect = 0.97 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 15/64 (23%) Query: 436 IGSLSGGQRGRVH------LAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAG--C 487 IG++S G RG +H L + + P + + TL ALE LE AG Sbjct: 149 IGTMSVGDRGGMHALYTPLLFE-------QVTAPFPPDGYEQATLDALEALLEKHAGEIA 201 Query: 488 AVII 491 A I+ Sbjct: 202 AFIV 205 >gnl|CDD|163294 TIGR03499, FlhF, flagellar biosynthetic protein FlhF. Length = 282 Score = 30.7 bits (70), Expect = 0.98 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%) Query: 330 RLLIDNLSFK------LPPGGIVGVIGPNGAGKTT 358 L L K L GG++ ++GP G GKTT Sbjct: 175 EALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTT 209 >gnl|CDD|180730 PRK06851, PRK06851, hypothetical protein; Provisional. Length = 367 Score = 30.7 bits (70), Expect = 1.0 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 14/53 (26%) Query: 28 SFYPDA-----KIGIL-GPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYL 74 S Y +I IL G G GKST+++ + GE +L G+ V +L Sbjct: 20 SLYDSIIDGANRIFILKGGPGTGKSTLMKKI--------GEEFLEKGYDVEFL 64 >gnl|CDD|161778 TIGR00231, small_GTP, small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. Length = 161 Score = 30.8 bits (70), Expect = 1.0 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS 388 + ++G GK+TL L G++ +YV Sbjct: 4 IVIVGDPNVGKSTLLNRLLGNKFITE----YKPGTTRNYVTTV 42 >gnl|CDD|131585 TIGR02533, type_II_gspE, general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. Length = 486 Score = 30.4 bits (69), Expect = 1.2 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Query: 342 PGGIVGVIGPNGAGK-TTLFRMLTGDESPDSGTIHV 376 P GI+ V GP G+GK TTL+ L+ +P+ + V Sbjct: 241 PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTV 276 >gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed. Length = 356 Score = 30.3 bits (69), Expect = 1.3 Identities = 15/42 (35%), Positives = 24/42 (57%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTI 374 +D L+ L G V ++G +G GK+TL L G+E +G + Sbjct: 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226 >gnl|CDD|128807 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family. Length = 185 Score = 30.2 bits (69), Expect = 1.4 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 6/25 (24%) Query: 37 ILGPNGAGKSTILR------IMAGI 55 I GPN GKST LR IMA I Sbjct: 4 ITGPNMGGKSTYLRQVGLIVIMAQI 28 >gnl|CDD|184357 PRK13873, PRK13873, conjugal transfer ATPase TrbE; Provisional. Length = 811 Score = 29.9 bits (68), Expect = 1.5 Identities = 10/17 (58%), Positives = 14/17 (82%) Query: 37 ILGPNGAGKSTILRIMA 53 ++GP GAGKS +L +MA Sbjct: 446 VVGPTGAGKSVLLALMA 462 >gnl|CDD|184924 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional. Length = 702 Score = 30.0 bits (67), Expect = 1.8 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 17/110 (15%) Query: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139 LD+S + + I H+ A+L EL + YSE+ +I +L +I ++ DL+ Q Sbjct: 275 LDVSLVLDQLI--STLHELALLQYLPELGLKYSEEINAKILQLSKLISAQ---DLQLYYQ 329 Query: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKL-LLS----SPDLLLLDEPT 184 +A + G + L+ +++ +C L LL+ +P+ +L+ EP Sbjct: 330 IACK-------GRSDLQLAVTQEQGFEMCVLRLLAFRPLAPNEILVSEPV 372 >gnl|CDD|162740 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. Length = 1164 Score = 29.7 bits (67), Expect = 1.8 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 6/36 (16%) Query: 14 KVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTIL 49 K FG KKV+ F I GPNG+GKS I Sbjct: 11 KSFGKKKVI-----PFSKGF-TVISGPNGSGKSNIG 40 >gnl|CDD|180213 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 424 Score = 29.9 bits (68), Expect = 1.9 Identities = 11/19 (57%), Positives = 14/19 (73%) Query: 340 LPPGGIVGVIGPNGAGKTT 358 L GG+V ++GP G GKTT Sbjct: 218 LKQGGVVALVGPTGVGKTT 236 >gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase; Provisional. Length = 512 Score = 29.9 bits (68), Expect = 2.0 Identities = 12/19 (63%), Positives = 14/19 (73%) Query: 35 IGILGPNGAGKSTILRIMA 53 I I GP GAGKST+ R +A Sbjct: 287 IAIDGPAGAGKSTVTRAVA 305 Score = 28.3 bits (64), Expect = 5.6 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 5/32 (15%) Query: 332 LIDN--LSFKLPPGGIVGVIGPNGAGKTTLFR 361 LIDN L + P I+ + GP GAGK+T+ R Sbjct: 274 LIDNVFLMKRQP---IIAIDGPAGAGKSTVTR 302 >gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed. Length = 712 Score = 29.8 bits (67), Expect = 2.1 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 13/67 (19%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAWLATG-----FTVGYLPQ----EPQLDLSKT 85 + I GP G GKS++ R +A +Y G A+L TG L Q + +L + Sbjct: 4 VAIDGPAGVGKSSVSRALA----QYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQV 59 Query: 86 VKENIIE 92 V E + E Sbjct: 60 VTEAVGE 66 >gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors. Length = 217 Score = 29.3 bits (66), Expect = 2.3 Identities = 11/19 (57%), Positives = 15/19 (78%) Query: 35 IGILGPNGAGKSTILRIMA 53 I I GP+GAGKST+ + +A Sbjct: 5 IAIDGPSGAGKSTVAKAVA 23 >gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. Length = 142 Score = 29.3 bits (66), Expect = 2.3 Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 348 VIGPNGAGKTTLFRMLTGDE 367 IG G GKTTL + L G+E Sbjct: 5 FIGSVGCGKTTLTQALQGEE 24 >gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional. Length = 225 Score = 29.3 bits (67), Expect = 2.4 Identities = 10/19 (52%), Positives = 14/19 (73%) Query: 35 IGILGPNGAGKSTILRIMA 53 I I GP G+GK T+ +I+A Sbjct: 7 IAIDGPAGSGKGTVAKILA 25 >gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional. Length = 327 Score = 29.2 bits (66), Expect = 2.4 Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 345 IVGVIGPNGAGKTTLFRMLT 364 ++GV G +G GKTT R L Sbjct: 10 LLGVAGDSGCGKTTFLRGLA 29 Score = 28.1 bits (63), Expect = 6.6 Identities = 8/16 (50%), Positives = 12/16 (75%) Query: 35 IGILGPNGAGKSTILR 50 +G+ G +G GK+T LR Sbjct: 11 LGVAGDSGCGKTTFLR 26 >gnl|CDD|162115 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785 Score = 29.2 bits (66), Expect = 2.5 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%) Query: 336 LSFKLPPGGIVG---VIGPNGAGKTTLFRML 363 +F + ++G + GP G+GKTTL L Sbjct: 424 FNFHVRDAKVLGHTLIFGPTGSGKTTLLNFL 454 >gnl|CDD|181981 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed. Length = 364 Score = 29.3 bits (67), Expect = 2.8 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 3/22 (13%) Query: 344 GIVGVIGPNGAGKTTLFRMLTG 365 GIVG+ PN GK+TLF LT Sbjct: 6 GIVGL--PN-VGKSTLFNALTK 24 >gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed. Length = 309 Score = 28.8 bits (65), Expect = 3.5 Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 346 VGVIGPNGAGKTTLFRMLTGD 366 + +IG GAGK+TL RML Sbjct: 136 IALIGLRGAGKSTLGRMLAAR 156 >gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed. Length = 229 Score = 28.7 bits (65), Expect = 3.6 Identities = 11/15 (73%), Positives = 13/15 (86%) Query: 345 IVGVIGPNGAGKTTL 359 IVG+ GP GAGK+TL Sbjct: 35 IVGIAGPPGAGKSTL 49 >gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. Length = 1169 Score = 28.8 bits (65), Expect = 3.7 Identities = 10/14 (71%), Positives = 12/14 (85%) Query: 348 VIGPNGAGKTTLFR 361 VIGP G+GKTTL + Sbjct: 116 VIGPPGSGKTTLLQ 129 >gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional. Length = 562 Score = 28.8 bits (65), Expect = 3.8 Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 25 INLSFYPDAKIGILGPNGAGKSTIL 49 I + K I G NGAGKST+L Sbjct: 20 IEIQLDKVKKTLITGKNGAGKSTML 44 >gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed. Length = 725 Score = 28.9 bits (65), Expect = 3.8 Identities = 9/14 (64%), Positives = 11/14 (78%) Query: 350 GPNGAGKTTLFRML 363 GP G GKTTL R++ Sbjct: 59 GPPGVGKTTLARII 72 >gnl|CDD|180787 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated. Length = 484 Score = 28.8 bits (65), Expect = 4.1 Identities = 9/16 (56%), Positives = 12/16 (75%) Query: 343 GGIVGVIGPNGAGKTT 358 GG+ ++GP G GKTT Sbjct: 256 GGVFALMGPTGVGKTT 271 >gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional. Length = 172 Score = 28.6 bits (64), Expect = 4.4 Identities = 9/24 (37%), Positives = 12/24 (50%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDES 368 V + G +G+GKTTL L Sbjct: 17 TVLIDGRSGSGKTTLAGALAARTG 40 >gnl|CDD|172357 PRK13830, PRK13830, conjugal transfer protein TrbE; Provisional. Length = 818 Score = 28.7 bits (64), Expect = 4.5 Identities = 12/25 (48%), Positives = 17/25 (68%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNG 61 I GP G+GKST+L ++A + Y G Sbjct: 461 IFGPTGSGKSTLLALIAAQFRRYAG 485 >gnl|CDD|168339 PRK06002, fliI, flagellum-specific ATP synthase; Validated. Length = 450 Score = 28.4 bits (64), Expect = 4.5 Identities = 11/23 (47%), Positives = 16/23 (69%) Query: 34 KIGILGPNGAGKSTILRIMAGID 56 +IGI +G GKST+L ++A D Sbjct: 167 RIGIFAGSGVGKSTLLAMLARAD 189 >gnl|CDD|131611 TIGR02560, HrpB4, type III secretion protein HrpB4. This family of genes are always found in type III secretion operons in a limited number of species including Burkholderia, Xanthomonas and Ralstonia. Length = 210 Score = 28.3 bits (63), Expect = 4.5 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 4/64 (6%) Query: 164 RVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLRE----YSGAVLMVTHDRYFLDNV 219 RV L S P L L E N L A + + LR + DR L + Sbjct: 53 RVIQAWLGWSGPSLSALLERANRLAVLPPALLLRVLRMRALFSRRTAVRRCIDRARLSRL 112 Query: 220 TNWI 223 W+ Sbjct: 113 EAWV 116 >gnl|CDD|148992 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side. Length = 301 Score = 28.5 bits (64), Expect = 4.9 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Query: 321 KGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +++ L+ +L+ PG ++G+ G G+GKT+ +L + H+ Sbjct: 2 GKYAENLAKLLVEPSLA----PGFVIGLYGAWGSGKTSFLNLLEDELKEFPEEFHI 53 >gnl|CDD|173172 PRK14709, PRK14709, hypothetical protein; Provisional. Length = 469 Score = 28.5 bits (64), Expect = 4.9 Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 39 GPNGAGKSTILRIMAGIDKEY 59 G G GKS L ++AGI +Y Sbjct: 212 GGGGNGKSVFLNVLAGILGDY 232 >gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below. Length = 207 Score = 28.5 bits (64), Expect = 4.9 Identities = 11/23 (47%), Positives = 17/23 (73%) Query: 341 PPGGIVGVIGPNGAGKTTLFRML 363 P G I+G+ G +G+GKTT+ R + Sbjct: 4 PKGIIIGIGGGSGSGKTTVARKI 26 >gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed. Length = 361 Score = 28.2 bits (64), Expect = 5.2 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 341 PPGGIVGVIGPNGAGKTTL 359 G+ ++G NG GKT L Sbjct: 21 LSPGVNVLVGENGQGKTNL 39 >gnl|CDD|173186 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional. Length = 767 Score = 28.2 bits (63), Expect = 5.3 Identities = 9/16 (56%), Positives = 13/16 (81%) Query: 343 GGIVGVIGPNGAGKTT 358 GG++ ++GP G GKTT Sbjct: 185 GGVLALVGPTGVGKTT 200 >gnl|CDD|115150 pfam06474, MLTD_N, MLTD_N. Length = 93 Score = 28.1 bits (63), Expect = 5.4 Identities = 7/29 (24%), Positives = 14/29 (48%) Query: 248 RMAQENREEISRQKAIERERDWIVSSPKA 276 R+ Q + I ++ +RDW + +P Sbjct: 63 RIRQGFQLGIPDNPRVDYQRDWYLKNPSF 91 >gnl|CDD|128571 smart00275, G_alpha, G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site. Length = 342 Score = 28.3 bits (64), Expect = 5.8 Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 26/118 (22%) Query: 34 KIGILGPNGAGKSTIL---RIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENI 90 K+ +LG +GKSTIL RI+ G GF+ QE + + + NI Sbjct: 23 KLLLLGAGESGKSTILKQMRILHG------------DGFS-----QEERREYRPLIYSNI 65 Query: 91 IEGVAHKQAILDRYNELMMNYS-EKTEEEIAKLQDIIDSKGLWD--LETEVQVAIESL 145 +E + +A++D EL + + ++ +I + + + + L E+ AI++L Sbjct: 66 LESM---KALVDAMEELNIPFEDPESILDIRIITEQFNKTDETENVLPKEIAKAIKAL 120 >gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP; Provisional. Length = 158 Score = 28.0 bits (62), Expect = 5.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 346 VGVIGPNGAGKTTLFRMLTGDES 368 + +G GAGKTTLF L G+ + Sbjct: 4 IAFVGAVGAGKTTLFNALQGNYT 26 >gnl|CDD|178393 PLN02796, PLN02796, D-glycerate 3-kinase. Length = 347 Score = 28.2 bits (63), Expect = 5.9 Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 341 PPGGIVGVIGPNGAGKTTLFRMLT 364 P ++G+ P G GKTTL L Sbjct: 98 IPPLVIGISAPQGCGKTTLVFALV 121 >gnl|CDD|162806 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. Length = 179 Score = 28.1 bits (63), Expect = 6.1 Identities = 10/17 (58%), Positives = 14/17 (82%) Query: 343 GGIVGVIGPNGAGKTTL 359 G ++ V+GP+GAGK TL Sbjct: 1 GRLIYVVGPSGAGKDTL 17 >gnl|CDD|163162 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). Length = 351 Score = 27.8 bits (63), Expect = 6.6 Identities = 11/23 (47%), Positives = 15/23 (65%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDE 367 V ++G AGK+TLF LTG + Sbjct: 191 TVALVGYTNAGKSTLFNALTGAD 213 >gnl|CDD|149505 pfam08477, Miro, Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 118 Score = 27.8 bits (62), Expect = 6.7 Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPD---SGTIHVGETVCLSYVDQSRDSLE 393 V VIG G+GK++L L G E P V VD + L Sbjct: 2 VVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLH 52 >gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. There are two conserved sequence motifs: GKT and YLP. Length = 1192 Score = 27.7 bits (62), Expect = 6.9 Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 340 LPPGGIVGVIGPNGAGKTTLFRML 363 L G + G N AGKTTL R++ Sbjct: 14 LDLDGHTNICGTNAAGKTTLQRLI 37 >gnl|CDD|173184 PRK14721, flhF, flagellar biosynthesis regulator FlhF; Provisional. Length = 420 Score = 28.0 bits (62), Expect = 7.2 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 340 LPPGGIVGVIGPNGAGKTT 358 + GG+ +IGP G GKTT Sbjct: 188 IEQGGVYALIGPTGVGKTT 206 >gnl|CDD|148770 pfam07350, DUF1479, Protein of unknown function (DUF1479). This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown. Length = 408 Score = 27.6 bits (62), Expect = 7.3 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%) Query: 352 NGAGKTTLFRMLTG-----DESPDSGTIHV 376 NG G ++FR G D P GT+ V Sbjct: 226 NGPGACSMFRTFQGWLALSDTGPGEGTLRV 255 >gnl|CDD|179921 PRK05057, aroK, shikimate kinase I; Reviewed. Length = 172 Score = 27.8 bits (62), Expect = 7.4 Identities = 12/19 (63%), Positives = 15/19 (78%) Query: 35 IGILGPNGAGKSTILRIMA 53 I ++GP GAGKSTI R +A Sbjct: 7 IFLVGPMGAGKSTIGRQLA 25 >gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Length = 143 Score = 27.6 bits (62), Expect = 7.4 Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 348 VIGPNGAGKTTLFRMLTGDE 367 +IG +G GKTTL + L G+E Sbjct: 6 LIGRSGCGKTTLTQALNGEE 25 >gnl|CDD|184339 PRK13807, PRK13807, maltose phosphorylase; Provisional. Length = 756 Score = 27.9 bits (63), Expect = 7.5 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 3/30 (10%) Query: 101 LDRYNELMMNYSEK---TEEEIAKLQDIID 127 L+ +++ + TEEE+AK QDI+D Sbjct: 508 LENLDKVKKEAPARLNVTEEELAKWQDIVD 537 >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional. Length = 484 Score = 27.6 bits (61), Expect = 7.6 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%) Query: 34 KIG----ILGPNGAGKSTILRIMA 53 KIG GP G GK+TI RI+A Sbjct: 38 KIGHAYIFFGPRGVGKTTIARILA 61 >gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase. Length = 656 Score = 27.9 bits (62), Expect = 7.7 Identities = 10/13 (76%), Positives = 12/13 (92%) Query: 345 IVGVIGPNGAGKT 357 +VGV GP+GAGKT Sbjct: 67 LVGVAGPSGAGKT 79 >gnl|CDD|163364 TIGR03631, bact_S13, 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type. Length = 113 Score = 27.5 bits (62), Expect = 8.2 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%) Query: 112 SEKTEEEIAKLQDIIDSK----GLWDLETEVQVAIESL 145 + TEEE+ +++ I++K G DL EV + I+ L Sbjct: 44 KDLTEEELNAIREEIEAKYKVEG--DLRREVSLNIKRL 79 >gnl|CDD|179955 PRK05179, rpsM, 30S ribosomal protein S13; Validated. Length = 122 Score = 27.4 bits (62), Expect = 8.9 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 6/35 (17%) Query: 115 TEEEIAKLQDIIDSK----GLWDLETEVQVAIESL 145 T+EE+ K+++ ID G DL EV + I+ L Sbjct: 49 TDEELDKIREEIDKNYKVEG--DLRREVSMNIKRL 81 >gnl|CDD|182441 PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional. Length = 318 Score = 27.4 bits (62), Expect = 9.1 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 3/14 (21%) Query: 345 IVGVIGPNGAGKTT 358 +VGV NG GKTT Sbjct: 119 VVGV---NGVGKTT 129 >gnl|CDD|162659 TIGR02012, tigrfam_recA, protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. Length = 321 Score = 27.3 bits (61), Expect = 9.6 Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 340 LPPGGIVGVIGPNGAGKTTL 359 LP G I+ + GP +GKTTL Sbjct: 52 LPRGRIIEIYGPESSGKTTL 71 >gnl|CDD|172354 PRK13826, PRK13826, Dtr system oriT relaxase; Provisional. Length = 1102 Score = 27.4 bits (61), Expect = 9.8 Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 342 PGGIVGVIGPNGAGKTTLFR 361 P I V+G GAGKTT+ + Sbjct: 396 PARIAAVVGRAGAGKTTMMK 415 >gnl|CDD|179671 PRK03906, PRK03906, mannonate dehydratase; Provisional. Length = 385 Score = 27.5 bits (62), Expect = 9.9 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 6/31 (19%) Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESL 145 EEI + I++ G LE V +ES+ Sbjct: 41 PVEEILARKAEIEAAG---LEWSV---VESV 65 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.316 0.135 0.391 Gapped Lambda K H 0.267 0.0636 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 8,998,246 Number of extensions: 606862 Number of successful extensions: 2941 Number of sequences better than 10.0: 1 Number of HSP's gapped: 2742 Number of HSP's successfully gapped: 872 Length of query: 539 Length of database: 5,994,473 Length adjustment: 98 Effective length of query: 441 Effective length of database: 3,876,889 Effective search space: 1709708049 Effective search space used: 1709708049 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 60 (27.1 bits)