BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] (539 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780273|ref|YP_003064686.1| putative ABC transporter ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 539 Score = 1109 bits (2869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 539/539 (100%), Positives = 539/539 (100%) Query: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN Sbjct: 1 MARKFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYN 60 Query: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120 GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA Sbjct: 61 GEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIA 120 Query: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL Sbjct: 121 KLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLL 180 Query: 181 DEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA 240 DEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA Sbjct: 181 DEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSA 240 Query: 241 YLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHP 300 YLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHP Sbjct: 241 YLQMKAKRMAQENREEISRQKAIERERDWIVSSPKARQSKSKARIRSYEELVESAAHRHP 300 Query: 301 GNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360 GNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF Sbjct: 301 GNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLF 360 Query: 361 RMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420 RMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA Sbjct: 361 RMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA 420 Query: 421 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA Sbjct: 421 YCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480 Query: 481 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA 539 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA Sbjct: 481 LENFAGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKLSRSSRVLSGA 539 >gi|254781123|ref|YP_003065536.1| putative ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 610 Score = 261 bits (668), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/513 (31%), Positives = 262/513 (51%), Gaps = 53/513 (10%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 I + +S G +L D+ LS P +I ++G NG+GKST+L+I AGI + +G +L Sbjct: 5 ILRLDHISATIGGIDLLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQSGNVFL 64 Query: 66 ATGFTVGYLPQEPQLDLSKTVKENI-------IEGVAHKQAILDRYNELMMNYSEKTEEE 118 + +GYL Q P L T+ + I IE ++L ++N Sbjct: 65 HSSSRLGYLEQNPDLSHFSTISQYIDDTIKDTIEAPYSPYSLLKKFN------------- 111 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 + QD I +LS G+ R VAL K+L+S PD+L Sbjct: 112 -LREQD----------------------------RIENLSVGQTRCVALMKMLISRPDIL 142 Query: 179 LLDEPTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNY 238 +LDEPTNHLD TI WME+ L + + A++ V+HDR FL+ ++ + +DRG + Sbjct: 143 ILDEPTNHLDFRTIHWMEQELLKINSALIFVSHDRRFLETLSTTTVWLDRGCLHHLDQGF 202 Query: 239 SAYLQMKAKRMAQENREEISRQKAIERERDWI---VSSPKARQSKSKARIRSYEELVESA 295 + + K + QE + +K E E++W+ V++ + R + + ++ ++ Sbjct: 203 AYFESWKKNILQQEQIRYHNLKKKNEAEKEWLRYGVTARRKRNVRRVKELHEIQKQLQEQ 262 Query: 296 AHRHPGNAQIIIPVGKRLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAG 355 Q + + G +V+EA I+K Y+DRL++ + S ++ G +G++GPNGAG Sbjct: 263 KKSFHSTIQTHLQTTQSSGKLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAG 322 Query: 356 KTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGD-DIVKLNGH 414 KTTL ++LTG PD G I +G + ++ +DQ R+ ++ +K++ ++G D + + G Sbjct: 323 KTTLLKLLTGKIKPDCGFITLGTNLKIATIDQKREDIDPDKSLASYLTGSSGDSLMVRGE 382 Query: 415 EINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETL 474 + Y F F + LSGG++ R +A++L N +++DEPTNDLD ETL Sbjct: 383 SRHVAGYIKDFLFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDEPTNDLDFETL 442 Query: 475 SALEDALENFAGCAVIISHDRMFLDRLATHILA 507 LE + G +I+SHDR FLDR T +A Sbjct: 443 DFLERTITQLQGTILIVSHDRDFLDRTVTSTIA 475 Score = 89.7 bits (221), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 112/224 (50%), Gaps = 19/224 (8%) Query: 312 RLGHVVIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDS 371 RL H+ GI L+ ++ + P + ++G NG+GK+TL ++ G P S Sbjct: 7 RLDHISATIGGID-------LLQDVCLSIKPKERICLVGCNGSGKSTLLKIAAGITEPQS 59 Query: 372 GTIHVGETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYC--SAFNFKG 429 G + + + L Y++Q+ D L T+ + I DD +K + E Y FN + Sbjct: 60 GNVFLHSSSRLGYLEQNPD-LSHFSTISQYI---DDTIK-DTIEAPYSPYSLLKKFNLR- 113 Query: 430 GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFAGCAV 489 +Q RI +LS GQ V L K+L S ++++LDEPTN LD T+ +E L + Sbjct: 114 --EQDRIENLSVGQTRCVALMKMLISRPDILILDEPTNHLDFRTIHWMEQELLKINSALI 171 Query: 490 IISHDRMFLDRLATHILAFEGNG--HVEWFEGNFEEYEKDKLSR 531 +SHDR FL+ L+T + + H++ FE ++K+ L + Sbjct: 172 FVSHDRRFLETLSTTTVWLDRGCLHHLDQGFAYFESWKKNILQQ 215 Score = 77.0 bits (188), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 35/250 (14%) Query: 4 KFIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEA 63 K + ++K + + V+ D +L + IGI+GPNGAGK+T+L+++ G K G Sbjct: 282 KLVLEADKITKQYDDRLVVKDFSLRIHYGECIGIVGPNGAGKTTLLKLLTGKIKPDCGFI 341 Query: 64 WLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQ 123 L T + + Q+ +E+I + + + +M E + ++ Sbjct: 342 TLGTNLKIATIDQK---------REDIDPDKSLASYLTGSSGDSLMVRGE-SRHVAGYIK 391 Query: 124 DIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSP-DLLLLDE 182 D L P ++ G ++ A+ +L+ P + L++DE Sbjct: 392 DF-------------------LFHPDQAHSLMKHLSGGEKMRAIVARVLAQPFNFLIMDE 432 Query: 183 PTNHLDAETIAWMEKYLREYSGAVLMVTHDRYFLD-NVTNWI----LEVDRGKGIPYQGN 237 PTN LD ET+ ++E+ + + G +L+V+HDR FLD VT+ I +E G I Y G Sbjct: 433 PTNDLDFETLDFLERTITQLQGTILIVSHDRDFLDRTVTSTIAAQNIEDPNGYWIKYAGG 492 Query: 238 YSAYLQMKAK 247 YS L + K Sbjct: 493 YSDMLVQQKK 502 >gi|254780718|ref|YP_003065131.1| putative high-affinity zinc uptake system ATP-binding component of ABC transporter protein [Candidatus Liberibacter asiaticus str. psy62] Length = 240 Score = 79.7 bits (195), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 40/221 (18%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79 K+L DIN + P+ + ++GPNG+GKSTI +++ GI K G VGY+PQ Sbjct: 24 KILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQ--- 80 Query: 80 LDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQ 139 K EN + L R+ L M + +++ ++ D ++ G ++ Sbjct: 81 ----KVTIENTLP------LSLMRFMTLSM---PSSRDDVLQILDRVNLIGKYNR----- 122 Query: 140 VAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE---TIAWME 196 NI LSGGE +R L K LL P+LL+LDEP +D ++ + Sbjct: 123 -------------NIKDLSGGEFQRALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELI 169 Query: 197 KYLREYSGA-VLMVTHDRYFLDNVTNWILEVDRGKGIPYQG 236 +R+ +G +L+++H+ + + T+ ++ ++ I YQG Sbjct: 170 TSVRQSTGCGILLISHNLHMVMASTDTVICLN--NRICYQG 208 Score = 62.4 bits (150), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 21/173 (12%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQS--- 388 ++ +++F + P IV +IGPNG+GK+T+ +++TG P G++ + + YV Q Sbjct: 25 ILQDINFTIKPNEIVTLIGPNGSGKSTIAKLITGIIKPTIGSVKRHPQLIVGYVPQKVTI 84 Query: 389 RDSLEAEKTVWEDI---SGGDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRG 445 ++L + + S DD++++ N G + I LSGG+ Sbjct: 85 ENTLPLSLMRFMTLSMPSSRDDVLQI----------LDRVNLI-GKYNRNIKDLSGGEFQ 133 Query: 446 RVHLAKILKSGGNVILLDEPTNDLDTE---TLSALEDALENFAGCAV-IISHD 494 R LAK L N+++LDEP +D +L L ++ GC + +ISH+ Sbjct: 134 RALLAKALLRKPNLLVLDEPLQGIDFPGELSLYELITSVRQSTGCGILLISHN 186 >gi|254780744|ref|YP_003065157.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 73.2 bits (178), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 96/191 (50%), Gaps = 16/191 (8%) Query: 317 VIEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 ++ A ++K YN ++ + + PG IVG++GPNGAGKTT F M+TG DSG+I + Sbjct: 25 LLSACSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKI 84 Query: 377 -GETVC-----------LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 G + +SY+ Q S+ TV E+I ++ + + + + + Sbjct: 85 DGNDITKMPMYRRARLGISYLPQEA-SIFRGLTVEENILAVLEVYEKDKKKRHEKLDSLL 143 Query: 425 FNFKGGDQQQRIGS-LSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALEN 483 F + + LSGGQR R+ +A+ L S + ILLDEP +D +S + + + Sbjct: 144 KEFNITKWRHVLAPLLSGGQRRRLEIARSLVSFPSYILLDEPFAGVDPVAISDIHVLIRD 203 Query: 484 FA--GCAVIIS 492 A G ++I+ Sbjct: 204 LASRGIGILIT 214 Score = 65.5 bits (158), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 50/235 (21%) Query: 10 AGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGE------- 62 L+K + S V+ ++L P +G+LGPNGAGK+T +M G+ +G Sbjct: 29 CSLTKKYNSVYVVKGVDLYVKPGEIVGLLGPNGAGKTTFFYMMTGLICADSGSIKIDGND 88 Query: 63 -----AWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEE 117 + + YLPQE + TV+ENI+ A+L+ Y E+ Sbjct: 89 ITKMPMYRRARLGISYLPQEASIFRGLTVEENIL-------AVLEVY-----------EK 130 Query: 118 EIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDL 177 + K + +DS L E + + H A LSGG++RR+ + + L+S P Sbjct: 131 DKKKRHEKLDS-----LLKEFNIT-KWRHVLA-----PLLSGGQRRRLEIARSLVSFPSY 179 Query: 178 LLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEVDRG 229 +LLDEP +D I+ + +R+ + +L+ H NV + +DR Sbjct: 180 ILLDEPFAGVDPVAISDIHVLIRDLASRGIGILITDH------NVHEILTLIDRA 228 >gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 65.1 bits (157), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 62/218 (28%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT---------- 70 VL++++LS + ++ P+G GKSTIL I ++ G +A Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 Query: 71 -----VGYLPQEPQLDLSKTVKENII-----EGVAHKQAILDRYNELM--MNYSEKTEEE 118 +G++ QE +L + +V ENII G+ HK A Y M ++Y + ++ Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTA----YQRAMDLLSYMDMSQYA 140 Query: 119 IAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLL 178 + DI SGGE++RVA+C+ + + P ++ Sbjct: 141 NRRSSDI--------------------------------SGGEQQRVAICRAIANKPLII 168 Query: 179 LLDEPTNHLD---AETIAWMEKYLREYSG-AVLMVTHD 212 L DEPT +LD A+ + + KYL SG A L+ TH+ Sbjct: 169 LADEPTGNLDLKTAQQVFSILKYLVVRSGLAALIATHN 206 Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%) Query: 332 LIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDS 391 +++N+ L G IV ++ P+G GK+T+ + E PD G + + +C D + Sbjct: 25 VLENVHLSLKKGEIVALVSPSGTGKSTILHIAGLLEVPDQGNVIIANQLCNKLSDDKKSF 84 Query: 392 LEAEK--------------TVWEDISGGDDIVKLNGHEINSRAYCSAFNFKGGDQ--QQR 435 L K +V E+I I +N RA ++ Q +R Sbjct: 85 LRCSKIGFVYQEHRLLMDFSVIENIIFPQIIAGINHKTAYQRAM-DLLSYMDMSQYANRR 143 Query: 436 IGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 +SGG++ RV + + + + +IL DEPT +LD +T Sbjct: 144 SSDISGGEQQRVAICRAIANKPLIILADEPTGNLDLKT 181 >gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 64.7 bits (156), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 27/177 (15%) Query: 318 IEAKGISKSY-NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV 376 +E K IS +Y N +++++ +P I +IG NGAGK+TLF+ + G D G+I + Sbjct: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71 Query: 377 -GETV-------CLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHE-INSRAYCSAFNF 427 +TV ++Y+ Q+ E W +D+V + ++ +N R S ++ Sbjct: 72 FNQTVENALKADLIAYIPQT------ESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125 Query: 428 K-----------GGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 + +Q++IG LS GQ+ RV LA+ L VI++DEP +D +T Sbjct: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182 Score = 42.7 bits (99), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 40/205 (19%) Query: 22 LDDINLSFYPDAKI-GILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFT--------VG 72 L+D+NL F P+ I ++G NGAGKST+ + + G+ G + + Sbjct: 28 LEDVNL-FIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86 Query: 73 YLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLW 132 Y+PQ +D + + ++E V ++ RY MN+ + S + Sbjct: 87 YIPQTESIDWTFPI---LVEDV----VMMGRYKH--MNWRR------------VASNNDY 125 Query: 133 DLETEV--QVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 + TE V + S+ G LS G+++RV L + L ++++DEP +D + Sbjct: 126 RIVTEALENVGMSSMRQRQIG----ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181 Query: 191 T---IAWMEKYLREYSGAVLMVTHD 212 T + ++ K L +L+ TH+ Sbjct: 182 TEREMIFLLKSLLNEDIMILVSTHN 206 >gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 254 Score = 63.5 bits (153), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 56/233 (24%) Query: 6 IYHMAG--LSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKE----- 58 IY M +S +G K+ L DINL ++ ++GP+G GKST LR + +++ Sbjct: 4 IYKMISNKVSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCV 63 Query: 59 YNGEAWL-------------ATGFTVGYLPQEPQLDLSKTVKENI-----IEGVAHKQAI 100 + GE L VG + Q P K++ +N+ I G+ + +A Sbjct: 64 FTGEIILDGKNIYQSSVDVVRLRARVGMVFQRPN-PFPKSIYDNVAYGPRIHGLGNNKAD 122 Query: 101 LDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGG 160 +D+ E+ + + E +L H + + LSGG Sbjct: 123 IDQIVEMSLKKASLFNEVKDRL----------------------FH------DASLLSGG 154 Query: 161 EKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYLREY--SGAVLMVTH 211 +++RV + + L +P+++L+DEP + LD A +E+ + E S +++VTH Sbjct: 155 QQQRVCIARALAVNPEVILMDEPCSALDPIATASVEELIHELRESLTIVIVTH 207 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/234 (26%), Positives = 105/234 (44%), Gaps = 36/234 (15%) Query: 323 ISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRML-----TGDESPDSGTIHV- 376 +S Y ++ + +++ K+P + +IGP+G GK+T R L T D +G I + Sbjct: 12 VSVCYGEKRALFDINLKIPQNSVTALIGPSGCGKSTFLRCLNRMNETIDNCVFTGEIILD 71 Query: 377 GETVCLSYVDQSRDSLEAE------------KTVWEDISGGDDIVKLNGHEIN------- 417 G+ + S VD R L A K+++++++ G I L ++ + Sbjct: 72 GKNIYQSSVDVVR--LRARVGMVFQRPNPFPKSIYDNVAYGPRIHGLGNNKADIDQIVEM 129 Query: 418 SRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSAL 477 S S FN LSGGQ+ RV +A+ L VIL+DEP + LD +++ Sbjct: 130 SLKKASLFNEVKDRLFHDASLLSGGQQQRVCIARALAVNPEVILMDEPCSALDPIATASV 189 Query: 478 EDALENF--AGCAVIISHDRMFLDRLATHILAFEGNGHVEWFEGNFEEYEKDKL 529 E+ + + VI++H R++ F GH+ EE + DK+ Sbjct: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM-GHL------VEEDDTDKM 236 >gi|254780596|ref|YP_003065009.1| ABC transporter nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 62.0 bits (149), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/243 (27%), Positives = 104/243 (42%), Gaps = 62/243 (25%) Query: 6 IYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWL 65 I L K+ G+ VLD +N + +G+LG +G+GKST+LRI+AG+ +G+ Sbjct: 17 ICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPSSGQVLF 76 Query: 66 ATGFTVGYLPQEPQLDLSK-----------TVKENIIEGVAHKQAILDRYNELMMNYSEK 114 G ++P D+S TV EN+ G+ K ++ E+ Sbjct: 77 K-----GKKIKDPPKDISVVFQTFALFPWLTVLENVELGLKAKG----------IDKEER 121 Query: 115 TEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSS 174 + ++ + D+I G ES H T +SGG +RV + + Sbjct: 122 RKRALSAI-DLIGLDGF-----------ESAHT-------TEISGGMLQRVGFARAFVVF 162 Query: 175 PDLLLLDEPTNHLDAETI---------AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILE 225 P LLL+DEP + LD T W+E L S +LMVTH N+ +L Sbjct: 163 PSLLLMDEPFSALDVLTAENLRTDLIDLWIEGRLPIES--MLMVTH------NIEEAVLM 214 Query: 226 VDR 228 DR Sbjct: 215 CDR 217 Score = 59.7 bits (143), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/171 (29%), Positives = 89/171 (52%), Gaps = 16/171 (9%) Query: 317 VIEAKGISKSYN------DRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPD 370 ++E + I +S++ + L++D ++F + G IVG++G +G+GK+TL R++ G SP Sbjct: 11 LLEIQDICQSFSLKKISGNLLVLDKVNFNVSSGEIVGLLGRSGSGKSTLLRIIAGLVSPS 70 Query: 371 SGTIHV-GETVC-----LSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRAYCSA 424 SG + G+ + +S V Q+ +L TV E++ G ++ E RA SA Sbjct: 71 SGQVLFKGKKIKDPPKDISVVFQTF-ALFPWLTVLENVELGLKAKGIDKEERRKRA-LSA 128 Query: 425 FNFKG--GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 + G G + +SGG RV A+ +++L+DEP + LD T Sbjct: 129 IDLIGLDGFESAHTTEISGGMLQRVGFARAFVVFPSLLLMDEPFSALDVLT 179 >gi|254780139|ref|YP_003064552.1| putative ATP-binding component of ABC transporter [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 98/223 (43%), Gaps = 46/223 (20%) Query: 35 IGILGPNGAGKSTILRIMAGIDKEYNGEAW-------LATG-----FT--VGYLPQEPQL 80 +G++G +G GKS ++R + G+ +GE LA G F+ +G L Q L Sbjct: 42 LGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQHGAL 101 Query: 81 DLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQV 140 S TV+ENI S +E + D+I+ ++ Sbjct: 102 FSSMTVQENI---------------------SMPIKEHLNLPADLIEHI------VHTKI 134 Query: 141 AIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLD---AETIAWMEK 197 AI L L LSGG +RV+L + L PDLL LDEPT+ LD AE + Sbjct: 135 AIVGLPPETANLMPFQLSGGMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLI 194 Query: 198 YLREYSG-AVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYS 239 LR G +V M+THD L + N + + + KGI +G S Sbjct: 195 KLRHSLGLSVYMITHDLNNLISTCNRVAVIQK-KGIMKEGTIS 236 Score = 42.4 bits (98), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 30/177 (16%) Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVDQS------------R 389 G I+GVIG +G GK+ L R + G SG + V GE + L+ Q+ Sbjct: 39 GEILGVIGSSGTGKSILMRGILGLIPRVSGEVKVLGEHLNLAKGKQNFAFSAKLGVLFQH 98 Query: 390 DSLEAEKTVWEDISG--------GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSG 441 +L + TV E+IS D+++ H ++++ + + LSG Sbjct: 99 GALFSSMTVQENISMPIKEHLNLPADLIE---HIVHTKIAIVGLPPETANLMPF--QLSG 153 Query: 442 GQRGRVHLAKILKSGGNVILLDEPTNDLD---TETLSALEDALENFAGCAV-IISHD 494 G RV LA+ L +++ LDEPT+ LD E L L + G +V +I+HD Sbjct: 154 GMIKRVSLARALAIDPDLLFLDEPTSGLDPIAAEEFDKLLIKLRHSLGLSVYMITHD 210 >gi|254780559|ref|YP_003064972.1| thiamine transporter ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 234 Score = 60.5 bits (145), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 84/192 (43%), Gaps = 42/192 (21%) Query: 34 KIGILGPNGAGKSTILRIMAGIDKEYNGEAWL---------ATGFTVGYLPQEPQLDLSK 84 +I ILGP+GAGKST+L +MAG G +L + + L QE L Sbjct: 27 RIVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQENNLFSHL 86 Query: 85 TVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIES 144 TV +NI G+A LD Y A+++ +++ L D Sbjct: 87 TVWQNIALGIA-PNLRLDHYQH-------------AQVKQMLEKVFLEDFFNRFP----- 127 Query: 145 LHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA----ETIAWMEKYLR 200 + +SGG+++RVAL + L+ +LLLDEP D E + +++ Sbjct: 128 ----------SQMSGGQRQRVALARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCD 177 Query: 201 EYSGAVLMVTHD 212 E +LM++H+ Sbjct: 178 ERQLTLLMISHN 189 Score = 55.5 bits (132), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 27/185 (14%) Query: 346 VGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG---------ETVCLSYVDQSRDSLEAEK 396 + ++GP+GAGK+TL ++ G + P G+I + LS + Q ++L + Sbjct: 28 IVILGPSGAGKSTLLSLMAGFKYPTRGSIFLNGQNHTRSSPSKRPLSILFQE-NNLFSHL 86 Query: 397 TVWEDISGG-------DDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHL 449 TVW++I+ G D ++ + + F + Q +SGGQR RV L Sbjct: 87 TVWQNIALGIAPNLRLDHYQHAQVKQMLEKVFLEDFFNRFPSQ------MSGGQRQRVAL 140 Query: 450 AKILKSGGNVILLDEPTNDLDT----ETLSALEDALENFAGCAVIISHDRMFLDRLATHI 505 A+ L ++LLDEP D E L L+ + ++ISH+ ++AT Sbjct: 141 ARCLIRQKPILLLDEPFAVFDPALRHEILGLLKQVCDERQLTLLMISHNLEDSMQIATRF 200 Query: 506 LAFEG 510 + G Sbjct: 201 IVIAG 205 >gi|255764467|ref|YP_003064798.2| Type I secretion system ATPase, PrtD [Candidatus Liberibacter asiaticus str. psy62] Length = 565 Score = 56.6 bits (135), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 54/221 (24%), Positives = 89/221 (40%), Gaps = 50/221 (22%) Query: 308 PVGKRLGHVVIEAKGI--SKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 P+ RL + I AK I RL+ NLSF +P G + GP+G GK+ + G Sbjct: 321 PISMRLSNNTITAKNIVFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLG 380 Query: 366 DESPDSGTIHVGE-----------TVCLSYVDQ-----------------SRDSLEAEKT 397 + + GTI G+ + + Y+ Q ++SL + Sbjct: 381 LLTLEKGTISFGDRQISRDFIEKFSAQIGYLSQHCSLFPISITENIILSHDQNSLHIAQK 440 Query: 398 VWEDISGGDDIVKL-NGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456 + + +DI+ L NG++ YCS + ++ L++I+ + Sbjct: 441 TAKIVGCHEDILSLKNGYQ---TTYCS-------------DEIPYNIVQKIRLSRIIANN 484 Query: 457 GNVILLDEPTNDLDTETLSALEDALENF---AGCAVIISHD 494 ++L+DEP LD E + L+ F VIISHD Sbjct: 485 PAILLMDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 Score = 40.8 bits (94), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 98/216 (45%), Gaps = 45/216 (20%) Query: 15 VFGSKKVLDDI--NLSF-YPDAKIGIL-GPNGAGKSTILRIMAGI-----------DKEY 59 VF KK I NLSF P+ I+ GP+G GKS L M G+ D++ Sbjct: 337 VFRDKKTSRLICQNLSFTIPEGSCCIIAGPSGCGKSNFLLCMLGLLTLEKGTISFGDRQI 396 Query: 60 NGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 + + +GYL Q L ++ ENII ++H Q N L + ++KT + + Sbjct: 397 SRDFIEKFSAQIGYLSQHCSL-FPISITENII--LSHDQ------NSLHI--AQKTAKIV 445 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLL 179 +DI+ K + ++ +C + + +++ L +++ ++P +LL Sbjct: 446 GCHEDILSLKNGY----------QTTYCSDE------IPYNIVQKIRLSRIIANNPAILL 489 Query: 180 LDEPTNHLDAET---IAWMEKYLREYSGAVLMVTHD 212 +DEP HLD E + K +E +++++HD Sbjct: 490 MDEPLYHLDNEAKNNFYTLLKQFKENKKTIVIISHD 525 >gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 596 Score = 53.9 bits (128), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 94/197 (47%), Gaps = 30/197 (15%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVC----------LS 383 NL FK G + ++GP+G+GK+T+ +L P SG+I + G + +S Sbjct: 373 NLCFK--SGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINIRDITFSSLRERIS 430 Query: 384 YVDQSRDSLEAEKTVWEDISGG------DDIVKL----NGHEINSRAYCSAFNFKGGDQQ 433 YV Q D TV +I G ++++++ N H+ + ++ G+ Sbjct: 431 YVGQ--DVFLFSNTVRYNILIGRPMATEEEMIEIAKSANAHDF-IMSLPQGYDTYVGENG 487 Query: 434 QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDALENFA-GCAVIIS 492 +LSGGQ+ R+ +A+ + G++++LDE T+ LDT T + + AL G I+ Sbjct: 488 ---SNLSGGQKQRIAIARAMLRDGHILVLDEATSALDTHTENLVRQALSRLMQGRTTIVI 544 Query: 493 HDRMFLDRLATHILAFE 509 R+ A HI+ E Sbjct: 545 AHRISTIIEADHIIFIE 561 Score = 51.6 bits (122), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 46/195 (23%) Query: 15 VFGSKK----VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGI------DKEYNGEAW 64 VF S K VL INL F ++GP+G+GKSTI+ ++ + E +G Sbjct: 358 VFFSYKQGHPVLSGINLCFKSGKMTALVGPSGSGKSTIINLLMRMYDPSSGSIEIDGINI 417 Query: 65 LATGFT-----VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEI 119 F+ + Y+ Q+ L S TV+ NI+ G TEEE+ Sbjct: 418 RDITFSSLRERISYVGQDVFL-FSNTVRYNILIG-----------------RPMATEEEM 459 Query: 120 AKLQDIIDSKGLWDLETEVQVAIESLHCPAD---GLNITSLSGGEKRRVALCKLLLSSPD 176 +I S D I SL D G N ++LSGG+K+R+A+ + +L Sbjct: 460 I---EIAKSANAHDF-------IMSLPQGYDTYVGENGSNLSGGQKQRIAIARAMLRDGH 509 Query: 177 LLLLDEPTNHLDAET 191 +L+LDE T+ LD T Sbjct: 510 ILVLDEATSALDTHT 524 >gi|254780173|ref|YP_003064586.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 257 Score = 52.0 bits (123), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 109/244 (44%), Gaps = 48/244 (19%) Query: 5 FIYHMAGLSKVFGSKKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAW 64 F + L+K +G+ L DINL+ ++ I GP+G+GKST++R + I+K GE Sbjct: 16 FAVEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEI- 74 Query: 65 LATGFT--------------VGYLPQEPQLDLSKTVKENIIEGVAHKQAILDR-YNELMM 109 + G VG + Q L + +V EN G + + + EL M Sbjct: 75 IINGIPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134 Query: 110 NYSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCK 169 +Y K V++A +S + + LSGGE +R A+ + Sbjct: 135 HYLNK-----------------------VKIADKSHR------SSSLLSGGESQRAAIAR 165 Query: 170 LLLSSPDLLLLDEPTNHLDAETIAWMEKYLREYSG---AVLMVTHDRYFLDNVTNWILEV 226 L P ++L DEPT+ LD E + + + E + ++ VTH+ F V + ++ + Sbjct: 166 SLCMQPKIMLFDEPTSALDPEMVKEVLDIMIELAEEGMTMVCVTHEMGFARQVADRVVFM 225 Query: 227 DRGK 230 D+G+ Sbjct: 226 DQGQ 229 Score = 37.7 bits (86), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 29/240 (12%) Query: 318 IEAKGISKSYNDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG 377 +E K ++K Y + + +++ + G V + GP+G+GK+TL R + E +G I + Sbjct: 18 VEIKFLNKWYGNFHALRDINLNVLRGERVIIAGPSGSGKSTLIRCINHIEKHQAGEIIIN 77 Query: 378 ETVCLSYVDQSRDSLEAEK---------------TVWEDISGGDDIV-KLNGHEINSRAY 421 + D R+ E + +V E+ + G V K+ + A Sbjct: 78 G---IPLNDDIRNIHEVRRDVGMVFQHFNLFSNLSVLENCTLGPIWVRKMPKKDAEELAM 134 Query: 422 CSAFNFKGGDQQQRIGSLSGGQRG-RVHLAKILKSGGNVILLDEPTNDLDTETLSALEDA 480 K D+ R SL G R +A+ L ++L DEPT+ LD E + + D Sbjct: 135 HYLNKVKIADKSHRSSSLLSGGESQRAAIARSLCMQPKIMLFDEPTSALDPEMVKEVLDI 194 Query: 481 LENFAG---CAVIISHDRMFLDRLATHILAF------EGNGHVEWFEGNFEEYEKDKLSR 531 + A V ++H+ F ++A ++ E N E+F E + LS+ Sbjct: 195 MIELAEEGMTMVCVTHEMGFARQVADRVVFMDQGQIVEQNSPEEFFNNPQHERTQAFLSQ 254 >gi|254781060|ref|YP_003065473.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 249 Score = 50.8 bits (120), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 114/248 (45%), Gaps = 27/248 (10%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQ 79 +++ +NL P + I+GPNG+GKST+ +++G K+Y T G + + + Sbjct: 17 EIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG-HKDYE--------ITAGDILYKGE 67 Query: 80 LDLSKTVKENIIEG--------VAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID-SKG 130 L ++ E +G V I+ ++ ++ +N K E L I D ++ Sbjct: 68 SILDWSIVERASKGIFLAFQYPVEIPGIIMMQFLKIALNEQRKARNEKELL--IPDFTRK 125 Query: 131 LWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAE 190 + + E+ + ++ L P LN+ SGGEK+ + ++ L P L +LDE + LD + Sbjct: 126 VRKITAELGINMDMLKRP---LNL-GFSGGEKKIAEILQMRLLEPSLCILDETDSGLDID 181 Query: 191 TI---AWMEKYLREYSGAVLMVTHDRYFLDNVTNWILEVDRGKGIPYQGNYSAYLQMKAK 247 + A LR + L++TH + L+ + + V I G+YS L ++ Sbjct: 182 ALKIAAQGVNALRSQDRSFLIITHYQRLLNYIKPDTIHVLHNGKIIKTGDYSIALDLEEN 241 Query: 248 RMAQENRE 255 A+ +E Sbjct: 242 GYAELIKE 249 Score = 38.5 bits (88), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTG 365 D +I L+ K+ P +V ++GPNG+GK+TL +L+G Sbjct: 14 TDTEIIRGLNLKVEPSEVVAIMGPNGSGKSTLSYLLSG 51 >gi|254780340|ref|YP_003064753.1| proline/glycine betaine ABC transporter, ATP-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 45.8 bits (107), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 33/202 (16%) Query: 337 SFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVG------------------- 377 + ++ G I+ ++G +GAGK+TL R + G G + V Sbjct: 49 NLEVKKGEILVLMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVNPYAADANVLRKL 108 Query: 378 --ETVCLSYVDQSRDSLEAEKTVWEDISGGDDIVKLNGHEINSRA--YCSAFNF-KGGDQ 432 TV + + + +L +TV ++ G + + + E SR + N K D Sbjct: 109 RMHTVSMVF---QQFALLPWRTVARNVELGLEFLDIPDVERKSRVAEHLEIVNLTKWADC 165 Query: 433 QQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTETLSALEDAL----ENFAGCA 488 +I LSGG + RV A+ +G ++L+DEP + LD L+D L Sbjct: 166 --KINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRKLKKTI 223 Query: 489 VIISHDRMFLDRLATHILAFEG 510 V +SHD RL I EG Sbjct: 224 VFVSHDINEAFRLGNRIAIMEG 245 Score = 44.3 bits (103), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 86/191 (45%), Gaps = 36/191 (18%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLAT--GFTVGYLPQEPQLDLSKTVKENIIEGV 94 ++G +GAGKST+LR + G+ GE + T GF P ++ + ++ + + V Sbjct: 60 LMGLSGAGKSTLLRSINGLAPVVRGEVLVDTDKGFVN---PYAADANVLRKLRMHTVSMV 116 Query: 95 AHKQAILD-----RYNELMMNYSEKTEEEIAKLQDIIDSKGLWDLETEVQVA----IESL 145 + A+L R EL + + + + D+E + +VA I +L Sbjct: 117 FQQFALLPWRTVARNVELGLEFLD-----------------IPDVERKSRVAEHLEIVNL 159 Query: 146 HCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDAETIAWMEKYL----RE 201 AD I LSGG K+RV + + +LL+DEP + LD ++ L R+ Sbjct: 160 TKWAD-CKINMLSGGMKQRVGFARAFATGAPILLMDEPFSSLDPLIRMRLQDELLALQRK 218 Query: 202 YSGAVLMVTHD 212 ++ V+HD Sbjct: 219 LKKTIVFVSHD 229 >gi|254780576|ref|YP_003064989.1| ABC transporter related protein [Candidatus Liberibacter asiaticus str. psy62] Length = 597 Score = 45.4 bits (106), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 36/182 (19%) Query: 21 VLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQL 80 + I+ P K ++G +G GKST+ +++ + Y+ + G + + Q Sbjct: 372 IFKGISFEIAPSKKTALIGESGVGKSTVAKLLY---RLYDIKG--------GIITIDGQ- 419 Query: 81 DLSKTVKENIIE--GVAHKQAILD----RYNELMMNYSEKTEE-----EIAKLQDIIDSK 129 D+ K KE++ + G+ + IL RYN L N + +E E+A+L+ I Sbjct: 420 DIKKITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVEVAQLKSFI--- 476 Query: 130 GLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHLDA 189 + + + + G LSGGEK+RV++ + +L +P +++ DE T+ LD Sbjct: 477 ----------MKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDI 526 Query: 190 ET 191 T Sbjct: 527 IT 528 Score = 43.5 bits (101), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 102/224 (45%), Gaps = 29/224 (12%) Query: 314 GHVVIEAKGISKSYNDR-LLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSG 372 GH+V +S SYN + +SF++ P +IG +G GK+T+ ++L G Sbjct: 355 GHIVFN--NVSFSYNHHNCIFKGISFEIAPSKKTALIGESGVGKSTVAKLLYRLYDIKGG 412 Query: 373 TIHV-GETVCLSYVDQSRDSL-EAEKTVWEDISGGDDIVKLNGHEINSRA----YCSA-- 424 I + G+ + +++SL + + +D +D ++ N N A C+A Sbjct: 413 IITIDGQDIK----KITKESLRQTIGIIPQDTILFNDTLRYNILYGNPNASDQELCAAVE 468 Query: 425 ------FNFK---GGDQQ--QRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTET 473 F K G D +R LSGG++ RV +A+ + +I+ DE T+ LD T Sbjct: 469 VAQLKSFIMKLPNGYDTVVGERGLKLSGGEKQRVSIARAILKNPPIIIFDEATSSLDIIT 528 Query: 474 LSALEDALENFAG--CAVIISHDRMFLDRLATHILAFEGNGHVE 515 ++ AL + ++I+H R+ A +I+ F+ VE Sbjct: 529 ERHIQTALATLSKNRTTLVIAH-RLSTITDADNIIVFDQGTVVE 571 >gi|254780193|ref|YP_003064606.1| lipid A ABC exporter family, fused ATPase and inner membrane subunits [Candidatus Liberibacter asiaticus str. psy62] Length = 528 Score = 44.3 bits (103), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 25/165 (15%) Query: 328 NDRLLIDNLSFKLPPGGIVGVIGPNGAGKTTLFRMLTGDESPDSGTIHV-GETVCLSYVD 386 + R ++ N++F + PG + ++G +GAGKT++F ++ P SG++ + G + L ++ Sbjct: 301 SKRSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLE 360 Query: 387 QSR--------DSLEAEKTVWEDISGGDDIVKLNGHEI-NSRAYCSAFNFKG-------- 429 + R + +V+++I+ G EI N+ A F G Sbjct: 361 EIRRFIAWVPQHPIMIAASVYDNIAIGCP--HATRKEIQNAAMLAQAHEFIGCLENGYDT 418 Query: 430 --GDQQQRIGSLSGGQRGRVHLAKILKSGGNVILLDEPTNDLDTE 472 GD LS GQ R+ +A+ + ++LLDE + LD E Sbjct: 419 ILGDGAVH---LSTGQIQRIAIARAILKDSPILLLDEMGSALDIE 460 Score = 41.2 bits (95), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 36/194 (18%) Query: 19 KKVLDDINLSFYPDAKIGILGPNGAGKSTILRIMAGIDKEYNGEAWLA-----------T 67 + +L ++N + P I ++G +GAGK++I ++ +G + Sbjct: 303 RSILKNVNFTVQPGETIALVGDSGAGKTSIFSLILRFYDPCSGSVEIEGIDLRLLSLEEI 362 Query: 68 GFTVGYLPQEPQLDLSKTVKENIIEGVAHKQAILDRYNELMMNYSEKTEEEIAKLQDIID 127 + ++PQ P + ++ +V +NI G H T +EI Sbjct: 363 RRFIAWVPQHPIM-IAASVYDNIAIGCPHA-----------------TRKEI-------Q 397 Query: 128 SKGLWDLETEVQVAIESLHCPADGLNITSLSGGEKRRVALCKLLLSSPDLLLLDEPTNHL 187 + + E +E+ + G LS G+ +R+A+ + +L +LLLDE + L Sbjct: 398 NAAMLAQAHEFIGCLENGYDTILGDGAVHLSTGQIQRIAIARAILKDSPILLLDEMGSAL 457 Query: 188 DAETIAWMEKYLRE 201 D E + K LRE Sbjct: 458 DIENEQKIWKVLRE 471 >gi|254780184|ref|YP_003064597.1| excinuclease ABC subunit A [Candidatus Liberibacter asiaticus str. psy62] Length = 959 Score = 35.8 bits (81), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 434 QRIGSLSGGQRGRVHLAKILK---SGGNVILLDEPTNDLDTETLSALEDALENFA--GCA 488 Q +LSGG+ RV LAK L +G + +LDEPT L ++ L + L G + Sbjct: 841 QSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGNS 900 Query: 489 VIISHDRMFLDRLATHILAF 508 +I+ + + + A IL F Sbjct: 901 IIVIEHNLEVIKTADWILDF 920 Score = 34.3 bits (77), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%) Query: 151 GLNITSLSGGEKRRVALCKLL---LSSPDLLLLDEPTNHLDAETIAWMEKYLR---EYSG 204 G + +LSGGE +RV L K L + L +LDEPT L IA + L + Sbjct: 840 GQSANTLSGGESQRVKLAKELSKQATGNTLYILDEPTTGLHYHDIAKLLNILHTLVDRGN 899 Query: 205 AVLMVTHDRYFLDNVTNWILE 225 +++++ H+ + +WIL+ Sbjct: 900 SIIVIEHNLEVI-KTADWILD 919 Score = 23.9 bits (50), Expect = 6.6, Method: Compositional matrix adjust. Identities = 9/27 (33%), Positives = 19/27 (70%) Query: 333 IDNLSFKLPPGGIVGVIGPNGAGKTTL 359 + N+S +LP ++ + G +G+GK++L Sbjct: 17 LQNISIELPRNKLIVMTGVSGSGKSSL 43 >gi|254780709|ref|YP_003065122.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 321 Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESPDSGTIHVGETVCLSYVDQSRDSLEAEKTVWEDISG 404 ++ V+G NG GKTT+ L+ S G V L+ D R + + +W D + Sbjct: 113 VILVVGVNGVGKTTVIGKLSKKMS------DAGLKVMLAAGDTFRSAAIDQLKIWADRTS 166 Query: 405 GDDIVKLNGHEINSRAYCSAFNFKGGDQQQRIGSLSGGQRGRVHLAKILKSG 456 D + EI S A A+ Q +++ L GR+H IL +G Sbjct: 167 ADFVCS----EIGSDAAALAYEAFKQAQAKKVDVLIIDTAGRLHNNSILMAG 214 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 26.6 bits (57), Expect = 1.0, Method: Compositional matrix adjust. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 76 QEPQLDLSKTVKENIIEGVAHKQAILDRYNELMM 109 Q PQ D+ + NIIE +++ D Y L+M Sbjct: 287 QFPQQDIDSFIPLNIIEEALNREPCPDPYAPLIM 320 >gi|255764460|ref|YP_003064605.2| recombinase A [Candidatus Liberibacter asiaticus str. psy62] Length = 363 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 13/20 (65%) Query: 340 LPPGGIVGVIGPNGAGKTTL 359 P G IV + GP +GKTTL Sbjct: 64 FPKGRIVEIYGPESSGKTTL 83 >gi|254780747|ref|YP_003065160.1| putative protease IV transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 293 Score = 26.2 bits (56), Expect = 1.4, Method: Compositional matrix adjust. Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 8/65 (12%) Query: 111 YSEKTEEEIAKLQDIIDSKGLWDLETEVQVAIESLHCPADGLNITS----LSGGEKRRVA 166 +SE + + +QD++DS W V++ ES + P D + S +G E ++V Sbjct: 167 FSEVNPKAVQMMQDVVDSSYHW----FVRLVSESRNIPYDKTLVLSDGRIWTGAEAKKVG 222 Query: 167 LCKLL 171 L ++ Sbjct: 223 LIDVV 227 >gi|254780226|ref|YP_003064639.1| translation-associated GTPase [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 26.2 bits (56), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 15/76 (19%) Query: 343 GGIVGVIGPNGAGKTTLFRMLTGDES------------PDSGTIHVGETVC--LSYVDQS 388 G G+IG GK+TLF LT S P+SG + V + L+ + +S Sbjct: 2 GFKCGIIGLPNVGKSTLFNALTRTASAQAANYPFCTIEPNSGEVAVPDPRMHKLAEIAES 61 Query: 389 RDSLEAEKTVWEDISG 404 +D L + + DI+G Sbjct: 62 KD-LVPTRMSFVDIAG 76 >gi|254780158|ref|YP_003064571.1| phosphoribosylaminoimidazole carboxylase ATPase subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 354 Score = 25.8 bits (55), Expect = 1.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Query: 432 QQQRIGSLSGGQRGRVHLAKILKSGGNVILLDE----PTNDLDTETLSALED---ALENF 484 +++ IG + GGQ R+ + G ++LD P N + + ++A D AL F Sbjct: 2 KKKTIGIIGGGQLARMLSMSAARLGFCTVILDPDSNCPANQVSNQQIAARHDDIKALNTF 61 Query: 485 A 485 A Sbjct: 62 A 62 >gi|254780545|ref|YP_003064958.1| metalloprotease [Candidatus Liberibacter asiaticus str. psy62] Length = 647 Score = 25.4 bits (54), Expect = 2.3, Method: Compositional matrix adjust. Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%) Query: 331 LLIDNLSFKLPPGGI---VGVIGPNGAGKTTLFRMLTGD 366 L D FK G I V ++GP G GKT L R + G+ Sbjct: 166 FLCDPQKFKRLGGRIPHGVLLVGPPGTGKTLLARAVAGE 204 >gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 24.6 bits (52), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 16/71 (22%) Query: 37 ILGPNGAGKSTILRIMAGIDKEYNGEAWLATGFTVGYLPQEPQLDLSKTVKENIIEGVAH 96 I P+G GKSTI R + D+ + + T + + N ++G + Sbjct: 20 ISSPSGVGKSTIARHLLKCDQNFEMSISVTT----------------RVRRPNEVDGKDY 63 Query: 97 KQAILDRYNEL 107 L R+NEL Sbjct: 64 YFLSLSRFNEL 74 >gi|254780768|ref|YP_003065181.1| hypothetical protein CLIBASIA_03295 [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 24.6 bits (52), Expect = 4.4, Method: Compositional matrix adjust. Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Query: 378 ETVCLSYVDQSRDSLEAEKTVWEDISGGD 406 + +C S +DSL K +W+ +SGG+ Sbjct: 82 QDLCFSI----KDSLRISKMIWQLVSGGN 106 >gi|255764477|ref|YP_003065232.2| dephospho-CoA kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 199 Score = 24.6 bits (52), Expect = 4.6, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 15/25 (60%) Query: 345 IVGVIGPNGAGKTTLFRMLTGDESP 369 I+G+ G G GKTT+ L ++ P Sbjct: 3 IIGLTGSIGTGKTTVAEFLKKEKIP 27 >gi|254780829|ref|YP_003065242.1| ATP-dependent protease ATP-binding subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 437 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Query: 335 NLSFKLPPGGIVGVIGPNGAGKTTLFRML 363 +L +L P I+ ++GP G GKT + R L Sbjct: 46 DLRDELMPKNIL-LVGPTGVGKTAISRRL 73 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 24.3 bits (51), Expect = 5.1, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Query: 21 VLDDINLSFYPDAKIGIL----GPNGAGKSTILR 50 + +D +LS D G L GPN GKST LR Sbjct: 635 IANDCDLSCPNDKNSGKLWLLTGPNMGGKSTFLR 668 >gi|254780615|ref|YP_003065028.1| F0F1 ATP synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 478 Score = 23.9 bits (50), Expect = 6.3, Method: Compositional matrix adjust. Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%) Query: 20 KVLDDINLSFYPDAKIGILGPNGAGKST-ILRIMAGIDKEYNGEAWLA 66 KV+D I+ + KIG+ G G GK+ I+ ++ + K + G + A Sbjct: 138 KVIDLIS-PYQKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFA 184 >gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 438 Score = 23.5 bits (49), Expect = 9.9, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 34 KIGILGPNGAGKSTILRIMAGID 56 +IG+ +G GKST+L + A D Sbjct: 163 RIGVFAGSGIGKSTLLSMFARSD 185 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.135 0.391 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,460 Number of Sequences: 1233 Number of extensions: 15710 Number of successful extensions: 143 Number of sequences better than 100.0: 35 Number of HSP's better than 100.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 48 Number of HSP's gapped (non-prelim): 78 length of query: 539 length of database: 328,796 effective HSP length: 78 effective length of query: 461 effective length of database: 232,622 effective search space: 107238742 effective search space used: 107238742 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 41 (20.4 bits)