HHsearch alignment for GI: 254780274 and conserved domain: COG1770
>COG1770 PtrB Protease II [Amino acid transport and metabolism].
Probab=98.15 E-value=0.00046 Score=45.96 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=126.4
Q ss_pred CCEEEEEECCCEEEEEE-EEECC--CCCCCEEEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEECC-HHHCCCCCCCCC
Q ss_conf 72499950893789999-97348--899967999988687898--8899999999986989999586-020885536787
Q gi|254780274|r 2 SQKTFLTEDETIHKSVH-SYNQT--HKTPRAIILACQSIEENI--EDYNDFREYFAEENVAVYIYSY-RNTIKTTSDYLR 75 (317)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~--~~~p~~~vl~~HG~~~~~--~~~~~~~~~l~~~G~~V~a~D~-rG~G~s~~~~~~ 75 (317)
T Consensus 419 s~riwa~a~dgv~VPVSLvyrkd~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGf-iyAIAHVRGGgelG~~-WY 496 (682)
T COG1770 419 SRRIWATADDGVQVPVSLVYRKDTKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGF-VYAIAHVRGGGELGRA-WY 496 (682)
T ss_pred EEEEEEECCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCE-EEEEEEEECCCCCCHH-HH
T ss_conf 999988758980841799994156678998579999534565578664412422001726-9999995066434757-88
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHH-HCC-CCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCCHHHHHHHH
Q ss_conf 666556399999999999999998-559-955999933872289999999683232132022777775441015668887
Q gi|254780274|r 76 DYPKNTSDTTIVCDVMKLRTLISE-KHG-NTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLL 153 (317)
Q Consensus 76 ~~~~~~~~~~~~~d~~~~~~~~~~-~~~-~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~ 153 (317)
T Consensus 497 e~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltT--------- 567 (682)
T COG1770 497 EDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTT--------- 567 (682)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCHHHHHHEEECCCCCCHHHH---------
T ss_conf 73445533364788999999999717678241589635723489999986184654312432773331232---------
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77753056321023433311111001110012334457446888876421157897899999999985000233310356
Q gi|254780274|r 154 KIEKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSR 233 (317)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (317)
T Consensus 568 -----MlD~slP---LT~~E~~EWG------------NP~d~e~y~------------------yikSYSPYdNV~a-~~ 608 (682)
T COG1770 568 -----MLDPSLP---LTVTEWDEWG------------NPLDPEYYD------------------YIKSYSPYDNVEA-QP 608 (682)
T ss_pred -----HCCCCCC---CCCCCHHHHC------------CCCCHHHHH------------------HHHHCCCHHCCCC-CC
T ss_conf -----0387789---8852034307------------977788999------------------9862593321455-78
Q ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCC--CEEEEECCCCCCCCCCCCCHHHHHHHH
Q ss_conf 884799972688874675799999999998578998--289982598316565698989999999
Q gi|254780274|r 234 FIPFCLIGGGNVSSKIEDLTQTYKLTTRLQNEEFYD--ISLMSLPPTMHSNDPHNVFPPPAIKKL 296 (317)
Q Consensus 234 ~~Pvlli~G~~D~~~~~~~~~~~~~~~~l~~~~~~~--~~l~~~pg~~H~~~l~e~~~~~~~~~i 296 (317)
T Consensus 609 YP~ilv~~Gl~D~rV~YwE-pAKW-vAkLR~~~td~~plLlkt~M~aGHgG~S---gRf~~lee~ 668 (682)
T COG1770 609 YPAILVTTGLNDPRVQYWE-PAKW-VAKLRELKTDGNPLLLKTNMDAGHGGAS---GRFQRLEEI 668 (682)
T ss_pred CCCEEEECCCCCCCCCCCH-HHHH-HHHHHHCCCCCCCEEEEECCCCCCCCCC---CCHHHHHHH
T ss_conf 8836897034578614520-7899-9987641368971799841346578778---736889999