HHsearch alignment for GI: 254780274 and conserved domain: PRK10115
>PRK10115 protease 2; Provisional.
Probab=98.45 E-value=8.3e-06 Score=57.55 Aligned_cols=252 Identities=11% Similarity=0.031 Sum_probs=132.0
Q ss_pred CEEEEEECCCEEEEEE-EEECCC--CCCCEEEEEECCCCCCH--HHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCC
Q ss_conf 2499950893789999-973488--99967999988687898--889999999998698999958602088553678766
Q gi|254780274|r 3 QKTFLTEDETIHKSVH-SYNQTH--KTPRAIILACQSIEENI--EDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDY 77 (317)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~--~~p~~~vl~~HG~~~~~--~~~~~~~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~ 77 (317)
T Consensus 417 ~rv~~~SkDGt~VP~siv~rk~~~~dg~~P~lLyGYG~ygis~~p~Fs~~~l~ll~rG~v~AiahvRGGgE~G-~~Wh~~ 495 (686)
T PRK10115 417 EHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELG-QQWYED 495 (686)
T ss_pred EEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCCCCCC-CHHHHH
T ss_conf 9999988999783179998068876789877999976466632786266575686589789999615788774-478986
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 655639999999999999999855--995599993387228999999968323213202277777544101566888777
Q gi|254780274|r 78 PKNTSDTTIVCDVMKLRTLISEKH--GNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKI 155 (317)
Q Consensus 78 ~~~~~~~~~~~d~~~~~~~~~~~~--~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~ 155 (317)
T Consensus 496 G~~~~K~n~f~Dfia~ae~Li~~g~t~~~~l~~~G~SaGGLLvga~~n~~Pelf~a~v~~Vp~vD~l~~----------- 564 (686)
T PRK10115 496 GKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVVTT----------- 564 (686)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHCHHHHCEEEECCCCCCCEEC-----------
T ss_conf 656459647799999999999839998302899972758888999885195763557866772232121-----------
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 75305632102343331111100111001233445744688887642115789789999999998500023331035688
Q gi|254780274|r 156 EKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFI 235 (317)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (317)
T Consensus 565 ---~~d~~~plt~---~e------------~~E~G~p~~~~~~~~i~------------------~YsPy~nv~~~-~YP 607 (686)
T PRK10115 565 ---MLDESIPLTT---GE------------FEEWGNPQDPQYYEYMK------------------SYSPYDNVTAQ-AYP 607 (686)
T ss_pred ---CCCCCCCCCC---CH------------HHHCCCCCCHHHHHHHH------------------HCCCHHCCCCC-CCC
T ss_conf ---3347878886---41------------20137968999999998------------------65924258978-898
Q ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC--CCEEEEECCCCCCCCCCCCCHHHHHH---H---HHHHHHHCCCCC
Q ss_conf 479997268887467579999999999857899--82899825983165656989899999---9---999998323731
Q gi|254780274|r 236 PFCLIGGGNVSSKIEDLTQTYKLTTRLQNEEFY--DISLMSLPPTMHSNDPHNVFPPPAIK---K---LRNWIVNSYLPK 307 (317)
Q Consensus 236 Pvlli~G~~D~~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~pg~~H~~~l~e~~~~~~~~---~---i~~Wl~~~~~~~ 307 (317)
T Consensus 608 ~~l~tt~~~D~RV~~~--~~~K~~A~L~~~~~~~~p~ll~~~~~aGHg~---~~~~~~~~~e~A~~~aFll~~~~~~~~~ 682 (686)
T PRK10115 608 HLLVTTGLHDSQVQYW--EPAKWVAKLRELKTDDHLLLLCTDMDSGHGG---KSGRFKSYEGVAMEYAFLIALAQGTLPA 682 (686)
T ss_pred HHHEEECCCCCCCCCC--HHHHHHHHHHHHCCCCCEEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 6878842688887977--7799999998636599708999647686778---8888999999999999999973066998
Q ss_pred C
Q ss_conf 1
Q gi|254780274|r 308 V 308 (317)
Q Consensus 308 ~ 308 (317)
T Consensus 683 ~ 683 (686)
T PRK10115 683 T 683 (686)
T ss_pred C
T ss_conf 8