HHsearch alignment for GI: 254780274 and conserved domain: TIGR01836
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; InterPro: IPR010125 This entry represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (IPR010123 from INTERPRO) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerise short-chain-length hydroxyalkanoates.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process.
Probab=99.62 E-value=5.3e-14 Score=112.04 Aligned_cols=287 Identities=14% Similarity=0.096 Sum_probs=186.1
Q ss_pred CCEEEEEECCCEEEEEEEEECC-CCCC--CEEEEEECCCCCCHHHH-----HHHHHHHHHCCCEEEEECCHHHCCCCCCC
Q ss_conf 7249995089378999997348-8999--67999988687898889-----99999999869899995860208855367
Q gi|254780274|r 2 SQKTFLTEDETIHKSVHSYNQT-HKTP--RAIILACQSIEENIEDY-----NDFREYFAEENVAVYIYSYRNTIKTTSDY 73 (317)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~-~~~p--~~~vl~~HG~~~~~~~~-----~~~~~~l~~~G~~V~a~D~rG~G~s~~~~ 73 (317)
T Consensus 44 t~kEvvy~~~K~~LYRy--~p~~~~tP~~k~PlLIVYALvNrPYm~DLQ~drSlv~~LL~~G~DVYLiDW-G------yP 114 (367)
T TIGR01836 44 TPKEVVYREDKVVLYRY--TPVKDNTPLHKTPLLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDW-G------YP 114 (367)
T ss_pred CCCEEEEECCCEEEEEE--CCCCCCCCCCCCCCEEEEECCCCCCCEEECCCCHHHHHHHHCCCCEEEEEC-C------CC
T ss_conf 88545754287788642--586678887456512354200645102324881688888856984899606-8------98
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCHH-HHEHEECCCCCCCCCCCHHHHHH-
Q ss_conf 8766655639999999999999999855995599993387228999999968323-21320227777754410156688-
Q gi|254780274|r 74 LRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQK-FSGIALWNLDLCFEKYSCMLMTL- 151 (317)
Q Consensus 74 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~lvGhS~GG~ia~~~a~~~p~~-v~~lvl~~~~~~~~~~~~~~~~~- 151 (317)
T Consensus 115 ~~~D~~ltLdDY~~~YI~~cV~~i~~~~~~d~i~lLG~CqGGTfsL~yAaL~~~kPiKNLvtMv~PVDF~~p~~~l~~~~ 194 (367)
T TIGR01836 115 DRADRYLTLDDYVNGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKPIKNLVTMVTPVDFETPGNLLSNWD 194 (367)
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCHHHHHCC
T ss_conf 73331140466676778999999986507896104314310478999997250478322178726625658733765416
Q ss_pred -----HH--H-HHHHHCCCCCHHHHHHHH--HHHHHCCCCCCCCCCCCCCCCHHH------HHHHHHCCCCCCHHHHHHH
Q ss_conf -----87--7-775305632102343331--111100111001233445744688------8876421157897899999
Q gi|254780274|r 152 -----LL--K-IEKFFKGSDTPSRLMRHL--TTDLWNRNNQNWKNFLKDHSVKKN------SQNYILDSNHIPISVWLEF 215 (317)
Q Consensus 152 -----~~--~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 215 (317)
T Consensus 195 GCtlGa~~~DiDl~VdtmGNiP~elln~~flmLKPf~l~~qKY~~L~d~~~D~~~v~nFlRMEKWifDsPd~AGEafRQf 274 (367)
T TIGR01836 195 GCTLGARHVDIDLAVDTMGNIPGELLNLTFLMLKPFSLGYQKYVNLVDILEDESKVENFLRMEKWIFDSPDQAGEAFRQF 274 (367)
T ss_pred CCEECHHHCCHHHHHHHCCCCCHHHHHHHHHHCCCHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 73100112125567752068767788657552151120689730102102685898626555223217888321358999
Q ss_pred HHHHHHHHHHH---------HHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC-CCCEEEEECCCCCCCCCC
Q ss_conf 99998500023---------33103568847999726888746757999999999985789-982899825983165656
Q gi|254780274|r 216 MSMATDISSRG---------SFNPLSRFIPFCLIGGGNVSSKIEDLTQTYKLTTRLQNEEF-YDISLMSLPPTMHSNDPH 285 (317)
Q Consensus 216 ~~~~~~~~~~~---------~~~~~~~~~Pvlli~G~~D~~~~~~~~~~~~~~~~l~~~~~-~~~~l~~~pg~~H~~~l~ 285 (317)
T Consensus 275 ~kdFYQ~N~li~G~~~iGg~~vdL~Ni~~PvLNiyA~~DHLV~P~~--S~aL~~---~v~sn~Dyt~~~F~~G-HiG~yv 348 (367)
T TIGR01836 275 VKDFYQQNGLINGEVEIGGRKVDLKNIKMPVLNIYAERDHLVPPDA--SKALND---LVSSNEDYTELSFPGG-HIGIYV 348 (367)
T ss_pred HHHHHHHCCCEECEEEECCEEECCEECCCCHHHHHHCCCCCCCCHH--HHHHCC---CCCCCCCCEECCCCCC-EEEEEE
T ss_conf 9999871661424079865453212256551256433477555169--997456---7543366210047984-389997
Q ss_pred -CCCHHHHHHHHHHHHHHC
Q ss_conf -989899999999999832
Q gi|254780274|r 286 -NVFPPPAIKKLRNWIVNS 303 (317)
Q Consensus 286 -e~~~~~~~~~i~~Wl~~~ 303 (317)
T Consensus 349 SgkaQkev~P~Ig~WL~~R 367 (367)
T TIGR01836 349 SGKAQKEVPPAIGKWLQER 367 (367)
T ss_pred CCEEEECCCHHHHHHHHCC
T ss_conf 7853313682688885139