HHsearch alignment for GI: 254780274 and conserved domain: TIGR01838
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I; InterPro: IPR010963 This entry represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerises hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of the cell.; GO: 0008415 acyltransferase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=98.18 E-value=5e-05 Score=52.40 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=77.9
Q ss_pred CCCCCEEEEEECCCCCCHHHH-------HHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 899967999988687898889-------9999999986989999586020885536787666556399999999999999
Q gi|254780274|r 24 HKTPRAIILACQSIEENIEDY-------NDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTL 96 (317)
Q Consensus 24 ~~~p~~~vl~~HG~~~~~~~~-------~~~~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~~~~~~d~~~~~~~ 96 (317)
T Consensus 184 e~V~~tPlLiVPP--~INKyYILDLrP~NSlvrWlv~QG~TVF~~SWrNPd~~-------~A~~tfdDY~~~G~~~Al~~ 254 (541)
T TIGR01838 184 ETVHKTPLLIVPP--FINKYYILDLRPENSLVRWLVEQGHTVFLISWRNPDAE-------QADLTFDDYVRDGVIAALEV 254 (541)
T ss_pred CCCCCCEEEEECC--CCCCCEECCCCCCHHHHHHHHHCCCCEEEEEECCCCHH-------HHHCCHHHHHHHHHHHHHHH
T ss_conf 2404302587378--73311201678653589999954993899860062756-------45367478999999999999
Q ss_pred HHHHCCCCEEEEEECCCCHHH---HHH-HHHHC-CHHHHEHEECCCCCC
Q ss_conf 998559955999933872289---999-99968-323213202277777
Q gi|254780274|r 97 ISEKHGNTSVLLFGYSLGTII---ALS-TLLKY-PQKFSGIALWNLDLC 140 (317)
Q Consensus 97 ~~~~~~~~~v~lvGhS~GG~i---a~~-~a~~~-p~~v~~lvl~~~~~~ 140 (317)
T Consensus 255 v~~itGe~~~N~~GYCIGGT~Ls~alA~lAArg~~~ri~SaTffTTllD 303 (541)
T TIGR01838 255 VEEITGEKQVNAVGYCIGGTLLSTALAYLAARGEKKRIKSATFFTTLLD 303 (541)
T ss_pred HHHHCCCEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 9861554065045410447899999999996178961245889999843