HHsearch alignment for GI: 254780274 and conserved domain: TIGR03230
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.73 E-value=1e-07 Score=70.28 Aligned_cols=113 Identities=15% Similarity=0.077 Sum_probs=73.5
Q ss_pred CCCEEEEEECCCCCCH--HHH-HHHHHHHH-HC-CCEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9967999988687898--889-99999999-86-9899995860208855367876665563999999999999999985
Q gi|254780274|r 26 TPRAIILACQSIEENI--EDY-NDFREYFA-EE-NVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEK 100 (317)
Q Consensus 26 ~p~~~vl~~HG~~~~~--~~~-~~~~~~l~-~~-G~~V~a~D~rG~G~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 100 (317)
T Consensus 39 ~s~pT~~IIHG~~~~g~~~~Wv~~m~~all~~~~d~NVI~VDW~~-ga~~----~Y~~A~~ntr~VG~~iA~~i~~L~~~ 113 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLS-RAQQ----HYPTSAAYTKLVGKDVAKFVNWMQEE 113 (442)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECHH-HCCC----CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 889809998888888987568999999999627981899980704-2272----35999998999999999999999985
Q ss_pred C--CCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCC
Q ss_conf 5--995599993387228999999968323213202277777544
Q gi|254780274|r 101 H--GNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEK 143 (317)
Q Consensus 101 ~--~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~ 143 (317)
T Consensus 114 ~g~~~~~vHlIGhSLGAHvAG~aG~~~~~~lgRITGLDPA~P~F~ 158 (442)
T TIGR03230 114 FNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAGPTFE 158 (442)
T ss_pred HCCCHHHEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 199811348985224201222345640687560884168752136