HHsearch alignment for GI: 254780274 and conserved domain: pfam03096
>pfam03096 Ndr Ndr family. This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted. The precise molecular and cellular function of members of this family is still unknown. Yet, they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (su
Probab=99.92 E-value=1e-21 Score=163.24 Aligned_cols=269 Identities=13% Similarity=0.088 Sum_probs=160.5
Q ss_pred CCEEEEEEEEECC-CCCCCEEEEEECCCCCCHHH-HHHH-----HHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHH
Q ss_conf 9378999997348-89996799998868789888-9999-----999998698999958602088553678766655639
Q gi|254780274|r 11 ETIHKSVHSYNQT-HKTPRAIILACQSIEENIED-YNDF-----REYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSD 83 (317)
Q Consensus 11 ~~~~~~~~~~~~~-~~~p~~~vl~~HG~~~~~~~-~~~~-----~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~ 83 (317)
T Consensus 5 ~t~~G~~~v~v~g~~~~~kp~~~t~hdlg~n~~s~f~~~f~~~~~~~l~~~-f~v~~iD~pGh~~ga~~-~~~~~~~ps~ 82 (285)
T pfam03096 5 ETPCGSVHVTVYGDPEGKKPPILTYHDLGLNHKSCFQGLFNSESMQEILEN-FCIYHVDAPGQEDGAAS-FPGGYPYPSM 82 (285)
T ss_pred CCCCCEEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCCHHHHHHHHC-CEEEEECCCCCCCCCCC-CCCCCCCCCH
T ss_conf 479851899998067899887998577654628775653065768998742-67999628987789998-9988888789
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999985599559999338722899999996832321320227777754410156688877775305632
Q gi|254780274|r 84 TTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSD 163 (317)
Q Consensus 84 ~~~~~d~~~~~~~~~~~~~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (317)
T Consensus 83 ~~la~~l~~vld~l----~i~~~~~~G~s~G~~i~~~fA~~~p~rv~~LvLi~~~~~~~~w~Ew~~~k~~~~~L~~~G-- 156 (285)
T pfam03096 83 DDLADMLPVVLDHF----RLKSVIGMGVGAGAYILARFALKHPERVEGLVLINPTPKAAGWIEWFYNKLSSKLLYYYG-- 156 (285)
T ss_pred HHHHHHHHHHHHHC----CCCEEEEEEECHHHHHHHHHHHHCHHHEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--
T ss_conf 99999999999971----987699984367889999999869676105799657877767789999999887776546--
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCC-CCHHHHHHHHHHHH-HHHHHHHHHCCCCCCCEEEEE
Q ss_conf 1023433311111001110012334457446888876421157-89789999999998-500023331035688479997
Q gi|254780274|r 164 TPSRLMRHLTTDLWNRNNQNWKNFLKDHSVKKNSQNYILDSNH-IPISVWLEFMSMAT-DISSRGSFNPLSRFIPFCLIG 241 (317)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Pvlli~ 241 (317)
T Consensus 157 mt~~~~d~ll~h~Fg~~~--------~~~n~div~~~R~~l~~~~n~~nl~~fl~a~~~R~dl~~~~~~~~~~cpvLlv~ 228 (285)
T pfam03096 157 MTDSAKDYLLAHYFGKEE--------LSNNSDIVQEYRKFLKERLNPKNLQLYLEAYNSRRDLTIERPGLEEVCPVLLVV 228 (285)
T ss_pred CHHHHHHHHHHHHCCCCC--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEEE
T ss_conf 437899999987657664--------458879999999999854498999999999847776602204468776669996
Q ss_pred ECCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 268887467579999999999857899828998259831656569898999999999998323
Q gi|254780274|r 242 GGNVSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVNSY 304 (317)
Q Consensus 242 G~~D~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~~~~ 304 (317)
T Consensus 229 Gd~sp~~----~~~v~~~~~ld~---~~stllki~dcG~--mv~~EqP~k~~e~i~~FLqG~g 282 (285)
T pfam03096 229 GDNSPHV----DAVVECNTKLDP---TKTTLLKVADCGG--LVQQEQPGKLTESFKLFLQGMG 282 (285)
T ss_pred CCCCCCH----HHHHHHHHHCCC---CCCEEEEECCCCC--CHHHCCCHHHHHHHHHHHHCCC
T ss_conf 3788207----789999860284---3225999567788--6110380999999999985478