HHsearch alignment for GI: 254780274 and conserved domain: pfam06057
>pfam06057 VirJ Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium.
Probab=98.77 E-value=7.1e-07 Score=64.67 Aligned_cols=100 Identities=12% Similarity=0.153 Sum_probs=76.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99998868789888999999999869899995860208855367876665563999999999999999985599559999
Q gi|254780274|r 30 IILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLF 109 (317)
Q Consensus 30 ~vl~~HG~~~~~~~~~~~~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~lv 109 (317)
T Consensus 4 lav~~SGDGGW~~lD~~va~~L~~~GvpVvGvdSLrY----------FW~~ktP~q~a~Dl~~ii~~Y~~~w~~~~v~Li 73 (192)
T pfam06057 4 VAVFYSGDGGWRDLDKEVGSALQKQGVPVVGVDSLRY----------FWSERTPEEVADDLDRIIDTYRKRWKVKNVVLI 73 (192)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHCCCCEEEECHHHH----------HHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 9999946887355519999999977983655326888----------756599899999999999999998589659999
Q ss_pred ECCCCHHHHHHHHHHCCH----HHHEHEECCCCC
Q ss_conf 338722899999996832----321320227777
Q gi|254780274|r 110 GYSLGTIIALSTLLKYPQ----KFSGIALWNLDL 139 (317)
Q Consensus 110 GhS~GG~ia~~~a~~~p~----~v~~lvl~~~~~ 139 (317)
T Consensus 74 GYSFGADvlP~~~n~LP~~~r~~v~~v~LL~~~~ 107 (192)
T pfam06057 74 GYSFGADVLPAAYNRLPPATKQRVRQVSLLALGK 107 (192)
T ss_pred EECCCCCHHHHHHHHCCHHHHHHHHEEEEECCCC
T ss_conf 6178722666546109999985411788844688