HHsearch alignment for GI: 254780274 and conserved domain: pfam09994

>pfam09994 DUF2235 Uncharacterized conserved protein (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=90.60  E-value=1.2  Score=23.16  Aligned_cols=95  Identities=12%  Similarity=0.140  Sum_probs=54.4

Q ss_pred             CEEEEEECCCCCCH------HHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             67999988687898------889999999998698999958602088553678766655639999999999999999855
Q gi|254780274|r   28 RAIILACQSIEENI------EDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKH  101 (317)
Q Consensus        28 ~~~vl~~HG~~~~~------~~~~~~~~~l~~~G~~V~a~D~rG~G~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  101 (317)
T Consensus         1 k~iiv~~DGT~n~~~~~~~~TNV~rL~~~~~~~~~~q~~~Y~~GVGT~~~~~~-~~~g~a~G~g~~~~i~~Ay~fl~~~y   79 (261)
T pfam09994         1 KRLVLCFDGTGNNLEGDAPPSNVAKLFRALDRSGPPQIVYYDPGVGTSGSRLD-KALGGAFGSGLDRNVREAYRFLARNY   79 (261)
T ss_pred             CEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHH-HHHHHHHHCCHHHHHHHHHHHHHHHC
T ss_conf             91999962899989999988899999998614798769997489847775203-33112544027999999999999837


Q ss_pred             -CCCEEEEEECCCCHHHHHHHHH
Q ss_conf             -9955999933872289999999
Q gi|254780274|r  102 -GNTSVLLFGYSLGTIIALSTLL  123 (317)
Q Consensus       102 -~~~~v~lvGhS~GG~ia~~~a~  123 (317)
T Consensus        80 ~~gD~I~lFGFSRGA~tAR~la~  102 (261)
T pfam09994        80 RPGDEIYLFGFSRGAYTARALAG  102 (261)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHH
T ss_conf             89988999503542899999998