HHsearch alignment for GI: 254780274 and conserved domain: pfam10142

>pfam10142 PhoPQ_related PhoPQ-activated pathogenicity-related protein. Members of this family of bacterial proteins are involved in the virulence of some pathogenic proteobacteria.
Probab=94.82  E-value=0.31  Score=27.15  Aligned_cols=157  Identities=15%  Similarity=0.093  Sum_probs=81.2

Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             9955999933872289999999683232132022777-775441015668887777530563210234333111110011
Q gi|254780274|r  102 GNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLD-LCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRN  180 (317)
Q Consensus       102 ~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (317)
T Consensus       166 ~i~~FvV~GaSKRGWttWltaa~-D~RV~ai~P~Vid~ln~~~~-------~~h~~~~y-G-~ws~a~~dY~~~g-----  230 (360)
T pfam10142       166 KIKKFVVTGASKRGWTTWLTAAV-DPRVAAIAPMVIDILNMRAQ-------LKHQYESY-G-NWSEALKDYVAEG-----  230 (360)
T ss_pred             CCHHEEEECCCCHHHHHHHHHHC-CCCEEEEEEEEECCCCCHHH-------HHHHHHHH-C-CCCHHHHHHHHCC-----
T ss_conf             60116994545210898887641-75614797688704460899-------99999975-6-8966777677718-----


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             10012334457446888876421157897899999999985000233310356884799972688874675799999999
Q gi|254780274|r  181 NQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLIGGGNVSSKIEDLTQTYKLTT  260 (317)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlli~G~~D~~~~~~~~~~~~~~~  260 (317)
T Consensus       231 --------------------i~~~l~------t~~f~~L~~ivDP~~Y~~-rl~~PKyiinatgDeFf~pDs~~--~y~~  281 (360)
T pfam10142       231 --------------------IDEQLN------TPAFKQLLQIVDPYSYRQ-RLTIPKYIINATGDEFFVPDSTN--FYFD  281 (360)
T ss_pred             --------------------CHHHHC------CHHHHHHHHHCCHHHHHH-HCCCCEEEEECCCCCCCCCCCCH--HHHH
T ss_conf             --------------------333308------978999988608275686-27856189844789630468434--5561


Q ss_pred             HHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf             998578998289982598316565698989999999999983237311103
Q gi|254780274|r  261 RLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVNSYLPKVIPL  311 (317)
Q Consensus       261 ~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~~~~~~~~~p~  311 (317)
T Consensus       282 ~L~----G~K~lryvPN~~H~l~~-----~~~~~~l~sf~~~~~~~~~lP~  323 (360)
T pfam10142       282 DLP----GEKALRYVPNASHGLIN-----TKVLESLVPFFKRVQAGRPLPE  323 (360)
T ss_pred             CCC----CCEEEEECCCCCCCCCC-----HHHHHHHHHHHHHHHCCCCCCE
T ss_conf             489----86469976889877651-----2389999999999975998873