HHsearch alignment for GI: 254780274 and conserved domain: pfam10142
>pfam10142 PhoPQ_related PhoPQ-activated pathogenicity-related protein. Members of this family of bacterial proteins are involved in the virulence of some pathogenic proteobacteria.
Probab=94.82 E-value=0.31 Score=27.15 Aligned_cols=157 Identities=15% Similarity=0.093 Sum_probs=81.2
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHCCHHHHEHEECCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9955999933872289999999683232132022777-775441015668887777530563210234333111110011
Q gi|254780274|r 102 GNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNLD-LCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRN 180 (317)
Q Consensus 102 ~~~~v~lvGhS~GG~ia~~~a~~~p~~v~~lvl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (317)
T Consensus 166 ~i~~FvV~GaSKRGWttWltaa~-D~RV~ai~P~Vid~ln~~~~-------~~h~~~~y-G-~ws~a~~dY~~~g----- 230 (360)
T pfam10142 166 KIKKFVVTGASKRGWTTWLTAAV-DPRVAAIAPMVIDILNMRAQ-------LKHQYESY-G-NWSEALKDYVAEG----- 230 (360)
T ss_pred CCHHEEEECCCCHHHHHHHHHHC-CCCEEEEEEEEECCCCCHHH-------HHHHHHHH-C-CCCHHHHHHHHCC-----
T ss_conf 60116994545210898887641-75614797688704460899-------99999975-6-8966777677718-----
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 10012334457446888876421157897899999999985000233310356884799972688874675799999999
Q gi|254780274|r 181 NQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLIGGGNVSSKIEDLTQTYKLTT 260 (317)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlli~G~~D~~~~~~~~~~~~~~~ 260 (317)
T Consensus 231 --------------------i~~~l~------t~~f~~L~~ivDP~~Y~~-rl~~PKyiinatgDeFf~pDs~~--~y~~ 281 (360)
T pfam10142 231 --------------------IDEQLN------TPAFKQLLQIVDPYSYRQ-RLTIPKYIINATGDEFFVPDSTN--FYFD 281 (360)
T ss_pred --------------------CHHHHC------CHHHHHHHHHCCHHHHHH-HCCCCEEEEECCCCCCCCCCCCH--HHHH
T ss_conf --------------------333308------978999988608275686-27856189844789630468434--5561
Q ss_pred HHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 998578998289982598316565698989999999999983237311103
Q gi|254780274|r 261 RLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWIVNSYLPKVIPL 311 (317)
Q Consensus 261 ~l~~~~~~~~~l~~~pg~~H~~~l~e~~~~~~~~~i~~Wl~~~~~~~~~p~ 311 (317)
T Consensus 282 ~L~----G~K~lryvPN~~H~l~~-----~~~~~~l~sf~~~~~~~~~lP~ 323 (360)
T pfam10142 282 DLP----GEKALRYVPNASHGLIN-----TKVLESLVPFFKRVQAGRPLPE 323 (360)
T ss_pred CCC----CCEEEEECCCCCCCCCC-----HHHHHHHHHHHHHHHCCCCCCE
T ss_conf 489----86469976889877651-----2389999999999975998873