RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780274|ref|YP_003064687.1| lysophospholipase protein
[Candidatus Liberibacter asiaticus str. psy62]
(317 letters)
>gnl|CDD|165193 PHA02857, PHA02857, monoglyceride lipase; Provisional.
Length = 276
Score = 37.2 bits (86), Expect = 0.005
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 4/108 (3%)
Query: 27 PRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTI 86
P+A++ E+ Y + E + + V+ + + ++ + +
Sbjct: 24 PKALVFISHGAGEHSGRYEELAENISSLGILVFSHDHIGHGRSNGEKM----MIDDFGVY 79
Query: 87 VCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIAL 134
V DV++ I + V L G+S+G I++ K P F+ + L
Sbjct: 80 VRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMIL 127
>gnl|CDD|130316 TIGR01249, pro_imino_pep_1, proline iminopeptidase, Neisseria-type
subfamily. This model represents one of two related
families of proline iminopeptidase in the alpha/beta
fold hydrolase family. The fine specificities of the
various members, including both the range of short
peptides from which proline can be removed and whether
other amino acids such as alanine can be also removed,
may vary among members.
Length = 306
Score = 37.1 bits (86), Expect = 0.006
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 48 REYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVL 107
R +F E + ++ R K+T + T D +V D+ KLR EK G + L
Sbjct: 46 RRFFDPETYRIVLFDQRGCGKSTP-HACLEENTTWD--LVADIEKLR----EKLGIKNWL 98
Query: 108 LFGYSLGTIIALSTLLKYPQKFSGIALWNLDLCFEK 143
+FG S G+ +AL+ +P+ +G+ L + L EK
Sbjct: 99 VFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREK 134
>gnl|CDD|163407 TIGR03695, menH_SHCHC,
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate
synthase. This protein catalyzes the formation of
SHCHC, or (1 R,6
R)-2-succinyl-6-hydroxy-2,
4-cyclohexadiene-1-carboxylate, by elmination of
pyruvate from
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate (SEPHCHC). Note that SHCHC synthase activity
previously was attributed to MenD, which in fact is
SEPHCHC synthase.
Length = 251
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 97 ISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIAL 134
+ ++ G L GYS+G IAL L+YP++ G+ L
Sbjct: 63 LLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQGLIL 100
>gnl|CDD|162270 TIGR01250, pro_imino_pep_2, proline-specific peptidases, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 288
Score = 34.3 bits (79), Expect = 0.043
Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 42 EDYNDFREYFAEENVAVYIY----SYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLI 97
E + RE EE V +Y + SD L + + V ++ ++R
Sbjct: 40 EYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDEL--WTIDYF----VDELEEVR--- 90
Query: 98 SEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGI 132
EK G L G+S G ++A LKY Q G+
Sbjct: 91 -EKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGL 124
>gnl|CDD|165136 PHA02771, PHA02771, hypothetical protein; Provisional.
Length = 90
Score = 31.1 bits (70), Expect = 0.43
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 28 RAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNTIKTTSDY 73
+ II++ EE I+D D +A++N+ Y YR I + DY
Sbjct: 28 KEIIVSYNQFEEIIKD-GDLTHRYADKNITSDFYEYRENIHSIIDY 72
>gnl|CDD|163135 TIGR03101, hydr2_PEP, hydrolase, ortholog 2, exosortase system type
1 associated. This group of proteins are members of the
alpha/beta hydrolase superfamily. These proteins are
generally found in genomes containing the
exosortase/PEP-CTERM protein expoert system,
specifically the type 1 variant of this system described
by the Genome Property GenProp0652. When found in this
context they are invariably present in the vicinity of a
second, relatively unrelated enzyme (ortholog 1,
TIGR03100) of the same superfamily.
Length = 266
Score = 29.0 bits (65), Expect = 1.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 99 EKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALW 135
+ G+ V L+G LG ++AL K + + LW
Sbjct: 94 IEQGHPPVTLWGLRLGALLALDAANPLAAKCNRLVLW 130
>gnl|CDD|152581 pfam12146, Hydrolase_4, Putative lysophospholipase. This domain
is found in bacteria and eukaryotes and is
approximately 110 amino acids in length. It is found in
association with pfam00561. Many members are annotated
as being lysophospholipases, and others as alpha-beta
hydrolase fold-containing proteins.
Length = 79
Score = 29.0 bits (66), Expect = 1.7
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 20 YNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYR 64
P+A+++ E+ Y + E A + AVY Y +R
Sbjct: 8 RWLPAGPPKAVVVLVHGGGEHSGRYAELAEELAAQGYAVYAYDHR 52
>gnl|CDD|178190 PLN02578, PLN02578, hydrolase.
Length = 354
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 106 VLLFGYSLGTIIALSTLLKYPQKFSGIALWN 136
+L G SLG ALST + YP+ +G+AL N
Sbjct: 154 AVLVGNSLGGFTALSTAVGYPELVAGVALLN 184
>gnl|CDD|162117 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2
(CPA2) family.
Length = 273
Score = 28.4 bits (64), Expect = 2.3
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 81 TSDTTIVCDVMKLRTLISEKHGNT--SVLLFGYSLGTIIALSTLLKYPQKFSGI 132
S T +V V+K R L+ G T +LLF + + L+ L S
Sbjct: 113 LSSTAVVVQVLKERGLLKTPFGQTVLGILLFQ-DIAVVPLLALLPLLATSASTE 165
>gnl|CDD|117130 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 788
Score = 28.6 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
Query: 149 MTLLLKIEKFFKGSDTPSRLMRHLTTDLWNR-NNQNWKNFLKDHSVKKNSQNYILDS 204
++ LLK FK +D + T LW N Q W K+ Q+YILD+
Sbjct: 323 LSWLLK----FKDADAFTHFQEGFTQALWETLNKQKWTK------AKETEQDYILDA 369
>gnl|CDD|150830 pfam10216, ChpXY, CO2 hydration protein (ChpXY). This small family
of proteins includes paralogues ChpX and ChpY in
Synechococcus sp. PCC7942 and other cyanobacteria,
associated with distinct NAD(P)H dehydrogenase
complexes. These proteins collectively enable
light-dependent CO2 hydration and CO2 uptake; loss of
both blocks growth at low CO2 concentrations.
Length = 353
Score = 28.0 bits (63), Expect = 2.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 157 KFFKGSDTPSRLMRHLTTDLWN 178
K+F G +P +L+RH D N
Sbjct: 56 KYFNGEISPPKLLRHWWHDRIN 77
>gnl|CDD|178011 PLN02385, PLN02385, hydrolase; alpha/beta fold family protein.
Length = 349
Score = 27.8 bits (62), Expect = 3.4
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 85 TIVCDVMKLRTLISE--KHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIAL 134
+V DV++ + I + LFG S+G +AL LK P + G L
Sbjct: 141 DLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAIL 192
>gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 27.1 bits (61), Expect = 5.6
Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 2/18 (11%)
Query: 238 CLIGGGNVSSKIE--DLT 253
GGGN S K DLT
Sbjct: 33 VNHGGGNTSVKTTETDLT 50
>gnl|CDD|150805 pfam10180, DUF2373, Uncharacterized conserved protein (DUF2373).
This is the C-terminal conserved region of a family of
proteins found from fungi to humans. The function is not
known.
Length = 65
Score = 27.2 bits (61), Expect = 5.7
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 11/42 (26%)
Query: 175 DLWNRNNQNWKNFLKDHSVKKNSQNYIL----DSNHIPISVW 212
W+++ NWK F KN QN++L D + IP +
Sbjct: 5 RQWHKDRSNWK-F------SKNKQNWLLKHIFDVDKIPEEYF 39
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 27.1 bits (60), Expect = 6.4
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 4/74 (5%)
Query: 71 SDYLRDYPKNTSDTTIVC--DVMKLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQK 128
+DY+ D+ +T+ ++ +M R L +H + + + + ++
Sbjct: 258 NDYVADFVAHTNPLNVLTARSLM--RPLTDLEHVDGGWCVSDRRDTWLFTIDKQVRRRDA 315
Query: 129 FSGIALWNLDLCFE 142
+ W + E
Sbjct: 316 KLPVQAWAAEQEVE 329
>gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 26.9 bits (60), Expect = 6.5
Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 20/42 (47%)
Query: 248 KIEDLTQTYKLTTRLQN-------------------EEFYDI 270
KIE TQT+ T LQN EF+DI
Sbjct: 543 KIEAATQTFATIT-LQNYFRMYHKLAGMTGTAETEAGEFWDI 583
>gnl|CDD|178561 PLN02980, PLN02980, 2-oxoglutarate decarboxylase/ hydro-lyase/
magnesium ion binding / thiamin pyrophosphate binding.
Length = 1655
Score = 27.1 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 106 VLLFGYSLGTIIALSTLLKYPQKFSG 131
V L GYS+G IAL L++ K G
Sbjct: 1447 VTLVGYSMGARIALYMALRFSDKIEG 1472
>gnl|CDD|178457 PLN02866, PLN02866, phospholipase D.
Length = 1068
Score = 27.0 bits (60), Expect = 6.9
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 18/40 (45%)
Query: 123 LKYPQKFS-GIALWN-----------------LDLCFEKY 144
L+YP FS G+ LW+ LDLCF +Y
Sbjct: 432 LRYPDHFSSGVYLWSHHEKLVIVDYQICFIGGLDLCFGRY 471
>gnl|CDD|178636 PLN03087, PLN03087, BODYGUARD 1 domain containing hydrolase;
Provisional.
Length = 481
Score = 26.7 bits (59), Expect = 7.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 99 EKHGNTSVLLFGYSLGTIIALSTLLKYP 126
E++ S + +SLG I+AL+ +K+P
Sbjct: 269 ERYKVKSFHIVAHSLGCILALALAVKHP 296
>gnl|CDD|149085 pfam07819, PGAP1, PGAP1-like protein. The sequences found in this
family are similar to PGAP1. This is an endoplasmic
reticulum membrane protein with a catalytic serine
containing motif that is conserved in a number of
lipases. PGAP1 functions as a GPI inositol-deacylase;
this deacylation is important for the efficient
transport of GPI-anchored proteins from the endoplasmic
reticulum to the Golgi body.
Length = 225
Score = 26.6 bits (59), Expect = 8.0
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 27/82 (32%)
Query: 45 NDFREYFAEENVAVYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLIS----EK 100
DF E + T+ ++YL D +R ++S +
Sbjct: 45 VDFNEEL------SAFHGR--TLLDQAEYLND---------------AIRYILSLYNSGR 81
Query: 101 HGNTSVLLFGYSLGTIIALSTL 122
TSV+L G+S+G ++A + L
Sbjct: 82 PPPTSVILIGHSMGGLVARAAL 103
>gnl|CDD|183538 PRK12460, PRK12460, 2-keto-3-deoxygluconate permease; Provisional.
Length = 312
Score = 26.9 bits (60), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 92 KLRTLISEKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIAL 134
+R ++ K G + F ++LG I LS LL+ +GI L
Sbjct: 185 DMRKFLT-KGGPLLIPFFAFALGAGINLSMLLQ--AGLAGILL 224
>gnl|CDD|148105 pfam06296, DUF1044, Protein of unknown function (DUF1044). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 120
Score = 26.8 bits (60), Expect = 8.1
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 94 RTLISEKHGNTSVLLFGYS 112
RT++ K G+ + LFG++
Sbjct: 60 RTIVLFKSGDRAFFLFGFA 78
>gnl|CDD|181727 PRK09249, PRK09249, coproporphyrinogen III oxidase; Provisional.
Length = 453
Score = 26.6 bits (60), Expect = 8.4
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 28 RAIILA--CQ---SIEENIEDYN-DFREYFAEE 54
R +I C + DF EYFAEE
Sbjct: 369 RDVIEQLMCNFELDFAAIEAAFGIDFAEYFAEE 401
>gnl|CDD|131525 TIGR02472, sucr_P_syn_N, sucrose-phosphate synthase, putative,
glycosyltransferase domain. This family consists of the
N-terminal regions, or in some cases the entirety, of
bacterial proteins closely related to plant
sucrose-phosphate synthases (SPS). The C-terminal domain
(TIGR02471), found with most members of this family,
resembles both bona fide plant sucrose-phosphate
phosphatases (SPP) and the SPP-like domain of plant SPS.
At least two members of this family lack the SPP-like
domain, which may have binding or regulatory rather than
enzymatic activity by analogy to plant SPS. This enzyme
produces sucrose 6-phosphate and UDP from UDP-glucose
and D-fructose 6-phosphate, and may be encoded near the
gene for fructokinase.
Length = 439
Score = 26.6 bits (59), Expect = 8.9
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 239 LIGGGNVSSKIEDLTQTYKLTTRLQNEEF 267
L+ G K + + + Y ++ R++ EE
Sbjct: 155 LLAAG---LKPQQIEKQYNISRRIEAEEE 180
>gnl|CDD|178344 PLN02743, PLN02743, nicotinamidase.
Length = 239
Score = 26.6 bits (59), Expect = 9.8
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 237 FCLIGGGNVSSKIEDLTQTYKLTTRLQNE------EFYDISL--MSLPPTMHSNDPHNVF 288
FC +G GN++ + D K +++ +E EF + ++ + H + P + +
Sbjct: 39 FCTVGAGNLAPREPD-----KQISKMVDESARLAREFCERKWPVLAFLDSHHPDKPEHPY 93
Query: 289 PPPAI 293
PP I
Sbjct: 94 PPHCI 98
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.134 0.403
Gapped
Lambda K H
0.267 0.0711 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,081,653
Number of extensions: 309642
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 633
Number of HSP's successfully gapped: 32
Length of query: 317
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 224
Effective length of database: 3,984,929
Effective search space: 892624096
Effective search space used: 892624096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)