BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780274|ref|YP_003064687.1| lysophospholipase protein
[Candidatus Liberibacter asiaticus str. psy62]
         (317 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 317

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/317 (100%), Positives = 317/317 (100%)

Query: 1   MSQKTFLTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYI 60
           MSQKTFLTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYI
Sbjct: 1   MSQKTFLTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYI 60

Query: 61  YSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALS 120
           YSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALS
Sbjct: 61  YSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKHGNTSVLLFGYSLGTIIALS 120

Query: 121 TLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRN 180
           TLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRN
Sbjct: 121 TLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRN 180

Query: 181 NQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLI 240
           NQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLI
Sbjct: 181 NQNWKNFLKDHSVKKNSQNYILDSNHIPISVWLEFMSMATDISSRGSFNPLSRFIPFCLI 240

Query: 241 GGGNVSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWI 300
           GGGNVSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWI
Sbjct: 241 GGGNVSSKIEDLTQTYKLTTRLQNEEFYDISLMSLPPTMHSNDPHNVFPPPAIKKLRNWI 300

Query: 301 VNSYLPKVIPLISQHKK 317
           VNSYLPKVIPLISQHKK
Sbjct: 301 VNSYLPKVIPLISQHKK 317


>gi|254780166|ref|YP_003064579.1| hydrolase protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 261

 Score = 27.3 bits (59), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 99  EKHGNTSVLLFGYSLGTIIALSTLLKYPQKFSGIALWNL 137
           E  G + V + GYS+G  IA S +L YP     + L  +
Sbjct: 93  EHLGISKVHVMGYSMGARIACSMVLFYPSYVRSVILGGV 131


>gi|254780832|ref|YP_003065245.1| putative potassium uptake transport system protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 628

 Score = 26.9 bits (58), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 7   LTEDETIHKSVHSYNQTHKTPRAIILACQSIEENIEDYNDFREYFAEENVAVYIYSYRNT 66
           +  ++ I  ++++ NQ  + P+     C+ I E+      F  Y  E+NV+  +   RN 
Sbjct: 506 ILHEQNIILTINTANQP-RIPKEKRFVCEKISEHFSRVELFFGYMEEQNVSQALAELRNN 564

Query: 67  -----IKTTSDYL 74
                I  TS YL
Sbjct: 565 GLKFEIMNTSFYL 577


>gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 71

 Score = 25.0 bits (53), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 9/42 (21%)

Query: 58 VYIYSYRNTIKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISE 99
          V I  +  +IKT +D+++DYP         CD ++L  L+++
Sbjct: 36 VKIGDHAESIKTLADFIKDYPD--------CD-LELENLVTD 68


>gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 24.6 bits (52), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 133 ALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDHS 192
           ++ +LD   + YS  L  + LK + FF G      L + L   L +   + + ++ +   
Sbjct: 23  SIPSLDSSIKDYSRQLTNIFLKDKVFFDG------LEQELLASLGSMGQEKFVSYARKKR 76

Query: 193 VKKNSQNYILDSNHI 207
            +++ ++ +  S H+
Sbjct: 77  SQRSPEDQLPSSKHL 91


>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 266

 Score = 24.3 bits (51), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 106 VLLFGY--SLG-TIIALSTLLKYPQKFSGIALWNLDLCFEKYSCMLMTLLL 153
           ++L G   S+G T  ALST L       G+A ++L++  EK     ++ LL
Sbjct: 144 LILIGARPSMGKTTFALSTALHMAMSGHGVAFFSLEMDREKLGARALSNLL 194


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1386

 Score = 22.7 bits (47), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 67  IKTTSDYLRDYPKNTSDTTIVCDVMKLRTLISEKH 101
           IK  S Y+ D P  T D T V   ++ R ++S+ H
Sbjct: 125 IKEQSIYMGDLPLMTKDGTFVIKGIQ-RIVVSQLH 158


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 214,187
Number of Sequences: 1233
Number of extensions: 8781
Number of successful extensions: 26
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 9
length of query: 317
length of database: 328,796
effective HSP length: 74
effective length of query: 243
effective length of database: 237,554
effective search space: 57725622
effective search space used: 57725622
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)