HHsearch alignment for GI: 254780275 and conserved domain: COG0691
>COG0691 SmpB tmRNA-binding protein [Posttranslational modification, protein turnover, chaperones].
Probab=100.00 E-value=0 Score=430.06 Aligned_cols=150 Identities=54% Similarity=0.886 Sum_probs=145.9
Q ss_pred CCCEEEEEECCEEEEEEEEEEEECCEEEEEHHHHHHHHCCCEEEEEEEEEECCEEEEEECCCCCHHCCCCCCCCCHHHHH
Q ss_conf 98428984123331025766562241775043666762982001115886566077740303720002332110001345
Q gi|254780275|r 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRK 88 (159)
Q Consensus 9 ~~~~ii~~NkkA~~~Y~i~e~~eAGIvL~G~EVKSiR~g~v~l~~sy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R~RK 88 (159)
T Consensus 3 ~~~~~ia~NkkA~~dY~I~e~~EAGivL~GtEVKSlRag~~nl~dsy~~i~~gE~~L~n~hI~py~~~~~~nhdp~R~RK 82 (153)
T COG0691 3 MGSKTIAQNKKARHDYFIEETFEAGIVLQGTEVKSLRAGKANLKDSYARIKKGEAWLINAHISPYEAGNRFNHDPRRTRK 82 (153)
T ss_pred CCCCEECCCCHHHCCEEEEEEEECCEEEEEEEEEEHHCCCCCCCCCEEEEECCEEEEEECCCCHHHHCCCCCCCCCHHHH
T ss_conf 65531000621421200103103206881017624131675711126998688099972624346617845688421666
Q ss_pred HHCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 53038999999986303893399996378079819999987224321100798987278888998876449
Q gi|254780275|r 89 LLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 (159)
Q Consensus 89 LLL~k~EI~kl~~~~~~kG~TiVPlkly~~~~g~~Kv~IalaKGKK~~DKR~~iK~rd~~re~~R~~K~~n 159 (159)
T Consensus 83 LLLhk~EI~kL~~kv~~~G~TlVpL~lY~k-~g~vKvei~lakGKK~~DKRe~iK~r~~~Re~~r~mk~~~ 152 (153)
T COG0691 83 LLLHKREIDKLIGKVEQEGYTLVPLKLYFK-KGKVKVEIGLAKGKKLHDKRETIKERDWKREKARLMKNRR 152 (153)
T ss_pred HHCCHHHHHHHHHHHHCCCEEEEEEHHHCC-CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 610799999999887518748985066410-8757899987047600136788988888899999876413