HHsearch alignment of GI: 254780275 and MMDB domain: 1p6v_A_
>1p6v_A (A:) SSRA-binding protein; SMPB, tmRNA, trans-translation, protein-RNA complex, RNA binding protein/RNA complex; 3.20A {Aquifex aeolicus}
Probab=100.00 E-value=0 Score=433.90 Aligned_cols=152 Identities=43% Similarity=0.701 Sum_probs=148.0
Q ss_pred CCCCCEEEEEECCEEEEEEEEEEEECCEEEEEHHHHHHHH-CCCEEEEEEEEEECCEEEEEECCCCCHHCCCCCCCCCHH
Q ss_conf 7898428984123331025766562241775043666762-982001115886566077740303720002332110001
Q gi|254780275|r 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 (159)
Q Consensus 7 ~~~~~~ii~~NkkA~~~Y~i~e~~eAGIvL~G~EVKSiR~-g~v~l~~sy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R 85 (159)
++++.++|++||||+|||+|+|+|||||||+||||||||+ |+|||.||||.+++||+||+||||+||.+++.++|||+|
T Consensus 2 k~~~~~~i~~NkkA~~~Y~i~e~~EAGIvL~G~EVKSiR~~gk~~l~dsy~~~~~~E~~L~n~~I~~y~~~~~~nh~p~R 81 (156)
T 1p6v_A 2 KSDKIIPIAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAPYKHATIENHDPLR 81 (156)
T ss_dssp -CCCEEEEEECSTTTTTSCEEEEEECCBCCCHHHHHHHHSCCCEECTTCCEECCSSCCEECCCEECCCSCC---CCCTTC
T ss_pred CCCCCCEEEECCCCCCCEEEEEEEEEEEEEECHHHHHHHHCCCCCCCCCEEEEECCEEEEEECEECCCCCCCCCCCCCCC
T ss_conf 98773263246634443358377998789912625978861863300028999999999980630464446555689872
Q ss_pred HHHHHCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 34553038999999986303893399996378079819999987224321100798987278888998876449
Q gi|254780275|r 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 (159)
Q Consensus 86 ~RKLLL~k~EI~kl~~~~~~kG~TiVPlkly~~~~g~~Kv~IalaKGKK~~DKR~~iK~rd~~re~~R~~K~~n 159 (159)
+|||||||+||.+|.+.++++|+|||||++||+ +|||||+||||+|||.|||||+||+|||+||++|+||+++
T Consensus 82 ~RKLLLhk~EI~kL~~~~~~kG~TiVPl~~y~k-~g~iKveIalakGKk~~DKR~~iK~rd~~Re~~r~lk~~~ 154 (156)
T 1p6v_A 82 KRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKGKKLYDRRRELKEKAMKRELEREFKGKI 154 (156)
T ss_dssp CEEBCCCHHHHHHHHHHHHHHCCEEEEEEEEEE-SSCEEEEEEEECCCCC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE-CCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 466665399999999887448961677788892-8878999999608812305678888899999999987522