HHsearch results for GI: 254780275 and protein with PDBid: 1j1h_A

>1j1h_A Small protein B; SMPB, SSRA associated protein, OB fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Thermus thermophilus} SCOP: b.111.1.1
Probab=100.00  E-value=0  Score=418.38  Aligned_cols=143  Identities=50%  Similarity=0.805  Sum_probs=140.2

Q ss_pred             EEEEEECCEEEEEEEEEEEECCEEEEEHHHHHHHHCCCEEEEEEEEEECCEEEEEECCCCCHHCCCCCCCCCHHHHHHHC
Q ss_conf             28984123331025766562241775043666762982001115886566077740303720002332110001345530
Q gi|254780275|r   12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLL   91 (159)
Q Consensus        12 ~ii~~NkkA~~~Y~i~e~~eAGIvL~G~EVKSiR~g~v~l~~sy~~~~~~E~~L~n~~I~~y~~~~~~~~~p~R~RKLLL   91 (159)
                      ++|++||||+|||+|+|+|||||||+||||||||+|++||+||||.+++||+||+||||+||.+++.++|||+|+|||||
T Consensus         2 ~~i~~NrKA~~dY~i~e~~eAGivL~G~EVKSiR~g~~~l~~syv~~~~~E~~L~n~~I~~y~~~~~~n~~p~R~RKLLL   81 (144)
T 1j1h_A            2 APVLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPYEKGSYANVDPRRKRKLLL   81 (144)
T ss_dssp             CCSSCCHHHHHTCCBSSCCEEECCCCTTHHHHHHTCEECCSSCCEEECSSCEEECSCCEESSCSSCCSCCCCSCCSCCCB
T ss_pred             CCHHHCCCCCCCEEEEEEEEEEEEEEEHEHHHHHCCCCCCCCCEEEEECCEEEEEECEECCHHCCCCCCCCCCCHHHHHH
T ss_conf             31431764344234747799878993025175874997723017999899799995654260106656679763354667


Q ss_pred             CHHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             389999999863038933999963780798199999872243211007989872788889988
Q gi|254780275|r   92 SKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI  154 (159)
Q Consensus        92 ~k~EI~kl~~~~~~kG~TiVPlkly~~~~g~~Kv~IalaKGKK~~DKR~~iK~rd~~re~~R~  154 (159)
                      ||+||.+|.+.++++|+|||||++||+++|+|||+||||||||+|||||++|+|||+||++|+
T Consensus        82 ~k~EI~kl~~~~~~kG~TiVPl~ly~~~~g~iKveIalakGKK~~DKR~~iK~rd~~Re~~ri  144 (144)
T 1j1h_A           82 HKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGKKAYEKRREDKKEAVRRALEEL  144 (144)
T ss_dssp             CHHHHHHHHHHHTTTTEECCCCEEECCTTTCCEEECCCEECC---------------------
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHEEEECCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf             299999999998649940560410470798899999986088313056788899998888529