BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780275|ref|YP_003064688.1| SsrA-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
(159 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
>gi|148559187|ref|YP_001258633.1| SsrA-binding protein [Brucella ovis ATCC 25840]
gi|166222365|sp|A5VPI6|SSRP_BRUO2 RecName: Full=SsrA-binding protein
gi|148370444|gb|ABQ60423.1| SsrA-binding protein [Brucella ovis ATCC 25840]
Length = 158
Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats.
Identities = 95/155 (61%), Positives = 131/155 (84%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E
Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEF 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY Q NRFNH PRR RKLL+S+ E+ RL+ +V R+GMT+VP+K+YFN +G A
Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRWEMSRLFNSVSREGMTVVPLKLYFNDRGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW+R+K R+LR+
Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157
>gi|85708971|ref|ZP_01040037.1| SsrA-binding protein [Erythrobacter sp. NAP1]
gi|85690505|gb|EAQ30508.1| SsrA-binding protein [Erythrobacter sp. NAP1]
Length = 184
Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats.
Identities = 86/159 (54%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + +K V++NR+AR++Y I FEAG+ L GTEVK+LR + I++SYA
Sbjct: 25 MARPKPKTFDKQKTVAENRRARFDYAIEEKFEAGLALQGTEVKALRAGEATIAESYAEVR 84
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E+WL NS IPEY NR NH PRR RKLLL+ REI++L+ AV R GMTLVP+ IYFNA
Sbjct: 85 DGEVWLINSNIPEYSHGNRLNHEPRRPRKLLLNGREINKLFGAVERKGMTLVPLSIYFNA 144
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AK++LALA+GK+ +DKR + K+RDW R K RI+R+
Sbjct: 145 QGRAKVELALAKGKQAHDKRASIKERDWKRDKARIMRDR 183
>gi|17987583|ref|NP_540217.1| SsrA-binding protein [Brucella melitensis bv. 1 str. 16M]
gi|23501534|ref|NP_697661.1| SsrA-binding protein [Brucella suis 1330]
gi|62289607|ref|YP_221400.1| SsrA-binding protein [Brucella abortus bv. 1 str. 9-941]
gi|82699535|ref|YP_414109.1| SsrA-binding protein [Brucella melitensis biovar Abortus 2308]
gi|161618618|ref|YP_001592505.1| SsrA-binding protein [Brucella canis ATCC 23365]
gi|163842919|ref|YP_001627323.1| SsrA-binding protein [Brucella suis ATCC 23445]
gi|189023861|ref|YP_001934629.1| SmpB protein [Brucella abortus S19]
gi|225627149|ref|ZP_03785187.1| SsrA-binding protein [Brucella ceti str. Cudo]
gi|225852168|ref|YP_002732401.1| SsrA-binding protein [Brucella melitensis ATCC 23457]
gi|237815102|ref|ZP_04594100.1| SsrA-binding protein [Brucella abortus str. 2308 A]
gi|254688924|ref|ZP_05152178.1| SsrA-binding protein [Brucella abortus bv. 6 str. 870]
gi|254697058|ref|ZP_05158886.1| SsrA-binding protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254701436|ref|ZP_05163264.1| SsrA-binding protein [Brucella suis bv. 5 str. 513]
gi|254703981|ref|ZP_05165809.1| SsrA-binding protein [Brucella suis bv. 3 str. 686]
gi|254707643|ref|ZP_05169471.1| SsrA-binding protein [Brucella pinnipedialis M163/99/10]
gi|254709775|ref|ZP_05171586.1| SsrA-binding protein [Brucella pinnipedialis B2/94]
gi|254713777|ref|ZP_05175588.1| SsrA-binding protein [Brucella ceti M644/93/1]
gi|254718790|ref|ZP_05180601.1| SsrA-binding protein [Brucella sp. 83/13]
gi|254729955|ref|ZP_05188533.1| SsrA-binding protein [Brucella abortus bv. 4 str. 292]
gi|256031265|ref|ZP_05444879.1| SsrA-binding protein [Brucella pinnipedialis M292/94/1]
gi|256044345|ref|ZP_05447249.1| SsrA-binding protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256113188|ref|ZP_05454056.1| SsrA-binding protein [Brucella melitensis bv. 3 str. Ether]
gi|256159375|ref|ZP_05457157.1| SsrA-binding protein [Brucella ceti M490/95/1]
gi|256254673|ref|ZP_05460209.1| SsrA-binding protein [Brucella ceti B1/94]
gi|256257172|ref|ZP_05462708.1| SsrA-binding protein [Brucella abortus bv. 9 str. C68]
gi|256264320|ref|ZP_05466852.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|256369085|ref|YP_003106593.1| SsrA-binding protein [Brucella microti CCM 4915]
gi|260168401|ref|ZP_05755212.1| SsrA-binding protein [Brucella sp. F5/99]
gi|260545636|ref|ZP_05821377.1| small protein B [Brucella abortus NCTC 8038]
gi|260563697|ref|ZP_05834183.1| small protein B [Brucella melitensis bv. 1 str. 16M]
gi|260566771|ref|ZP_05837241.1| small protein B [Brucella suis bv. 4 str. 40]
gi|260754410|ref|ZP_05866758.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260757629|ref|ZP_05869977.1| small protein B [Brucella abortus bv. 4 str. 292]
gi|260761456|ref|ZP_05873799.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260883438|ref|ZP_05895052.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|261221849|ref|ZP_05936130.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261315137|ref|ZP_05954334.1| small protein B [Brucella pinnipedialis M163/99/10]
gi|261317307|ref|ZP_05956504.1| small protein B [Brucella pinnipedialis B2/94]
gi|261321518|ref|ZP_05960715.1| small protein B [Brucella ceti M644/93/1]
gi|261751975|ref|ZP_05995684.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261754633|ref|ZP_05998342.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|261757862|ref|ZP_06001571.1| SsrA-binding protein [Brucella sp. F5/99]
gi|265983770|ref|ZP_06096505.1| small protein B [Brucella sp. 83/13]
gi|265988346|ref|ZP_06100903.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|265990759|ref|ZP_06103316.1| small protein B [Brucella melitensis bv. 1 str. Rev.1]
gi|265994595|ref|ZP_06107152.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|265997813|ref|ZP_06110370.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|294852012|ref|ZP_06792685.1| SsrA-binding protein [Brucella sp. NVSL 07-0026]
gi|297248019|ref|ZP_06931737.1| SsrA-binding protein [Brucella abortus bv. 5 str. B3196]
gi|306837509|ref|ZP_07470384.1| SsrA-binding protein [Brucella sp. NF 2653]
gi|306842088|ref|ZP_07474760.1| SsrA-binding protein [Brucella sp. BO2]
gi|306845248|ref|ZP_07477824.1| SsrA-binding protein [Brucella sp. BO1]
gi|54039639|sp|P66859|SSRP_BRUSU RecName: Full=SsrA-binding protein
gi|54042226|sp|P66858|SSRP_BRUME RecName: Full=SsrA-binding protein
gi|75497092|sp|Q57E95|SSRP_BRUAB RecName: Full=SsrA-binding protein
gi|123754519|sp|Q2YMY0|SSRP_BRUA2 RecName: Full=SsrA-binding protein
gi|189046819|sp|A9MA22|SSRP_BRUC2 RecName: Full=SsrA-binding protein
gi|189046820|sp|B0CKX3|SSRP_BRUSI RecName: Full=SsrA-binding protein
gi|238691496|sp|B2SAC5|SSRP_BRUA1 RecName: Full=SsrA-binding protein
gi|254778347|sp|C0RHY9|SSRP_BRUMB RecName: Full=SsrA-binding protein
gi|17983289|gb|AAL52481.1| small protein b [Brucella melitensis bv. 1 str. 16M]
gi|23347444|gb|AAN29576.1| SsrA-binding protein [Brucella suis 1330]
gi|62195739|gb|AAX74039.1| SmpB, SsrA-binding protein [Brucella abortus bv. 1 str. 9-941]
gi|82615636|emb|CAJ10623.1| SmpB protein [Brucella melitensis biovar Abortus 2308]
gi|161335429|gb|ABX61734.1| SsrA-binding protein [Brucella canis ATCC 23365]
gi|163673642|gb|ABY37753.1| SsrA-binding protein [Brucella suis ATCC 23445]
gi|189019433|gb|ACD72155.1| SmpB protein [Brucella abortus S19]
gi|225617984|gb|EEH15028.1| SsrA-binding protein [Brucella ceti str. Cudo]
gi|225640533|gb|ACO00447.1| SsrA-binding protein [Brucella melitensis ATCC 23457]
gi|237789939|gb|EEP64149.1| SsrA-binding protein [Brucella abortus str. 2308 A]
gi|255999245|gb|ACU47644.1| SsrA-binding protein [Brucella microti CCM 4915]
gi|260097043|gb|EEW80918.1| small protein B [Brucella abortus NCTC 8038]
gi|260153713|gb|EEW88805.1| small protein B [Brucella melitensis bv. 1 str. 16M]
gi|260156289|gb|EEW91369.1| small protein B [Brucella suis bv. 4 str. 40]
gi|260667947|gb|EEX54887.1| small protein B [Brucella abortus bv. 4 str. 292]
gi|260671888|gb|EEX58709.1| conserved hypothetical protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260674518|gb|EEX61339.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870]
gi|260872966|gb|EEX80035.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68]
gi|260920433|gb|EEX87086.1| conserved hypothetical protein [Brucella ceti B1/94]
gi|261294208|gb|EEX97704.1| small protein B [Brucella ceti M644/93/1]
gi|261296530|gb|EEY00027.1| small protein B [Brucella pinnipedialis B2/94]
gi|261304163|gb|EEY07660.1| small protein B [Brucella pinnipedialis M163/99/10]
gi|261737846|gb|EEY25842.1| SsrA-binding protein [Brucella sp. F5/99]
gi|261741728|gb|EEY29654.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513]
gi|261744386|gb|EEY32312.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686]
gi|262552281|gb|EEZ08271.1| conserved hypothetical protein [Brucella ceti M490/95/1]
gi|262765708|gb|EEZ11497.1| conserved hypothetical protein [Brucella melitensis bv. 3 str.
Ether]
gi|263001543|gb|EEZ14118.1| small protein B [Brucella melitensis bv. 1 str. Rev.1]
gi|263094594|gb|EEZ18392.1| conserved hypothetical protein [Brucella melitensis bv. 2 str.
63/9]
gi|264660543|gb|EEZ30804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1]
gi|264662362|gb|EEZ32623.1| small protein B [Brucella sp. 83/13]
gi|294820601|gb|EFG37600.1| SsrA-binding protein [Brucella sp. NVSL 07-0026]
gi|297175188|gb|EFH34535.1| SsrA-binding protein [Brucella abortus bv. 5 str. B3196]
gi|306274407|gb|EFM56214.1| SsrA-binding protein [Brucella sp. BO1]
gi|306287838|gb|EFM59261.1| SsrA-binding protein [Brucella sp. BO2]
gi|306407401|gb|EFM63605.1| SsrA-binding protein [Brucella sp. NF 2653]
gi|326408669|gb|ADZ65734.1| SmpB protein [Brucella melitensis M28]
gi|326538394|gb|ADZ86609.1| SsrA-binding protein [Brucella melitensis M5-90]
Length = 158
Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats.
Identities = 96/155 (61%), Positives = 132/155 (85%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E
Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEF 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G A
Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW+R+K R+LR+
Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157
>gi|254693406|ref|ZP_05155234.1| SsrA-binding protein [Brucella abortus bv. 3 str. Tulya]
gi|261213656|ref|ZP_05927937.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
gi|260915263|gb|EEX82124.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya]
Length = 158
Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats.
Identities = 96/155 (61%), Positives = 131/155 (84%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA FE+ E
Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYARFEDGEF 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G A
Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW+R+K R+LR+
Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157
>gi|239831483|ref|ZP_04679812.1| SsrA-binding protein [Ochrobactrum intermedium LMG 3301]
gi|239823750|gb|EEQ95318.1| SsrA-binding protein [Ochrobactrum intermedium LMG 3301]
Length = 158
Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats.
Identities = 98/155 (63%), Positives = 132/155 (85%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FEN E
Sbjct: 3 KPKNSPVRKIIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQSNIAESYASFENGEF 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY Q NRFNH PRR RKLL+SKRE+ RL+ +V R+GMT+VP+K+YFN +G A
Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLISKREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW+R+K R+LR+
Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157
>gi|209548593|ref|YP_002280510.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|226706529|sp|B5ZW65|SSRP_RHILW RecName: Full=SsrA-binding protein
gi|209534349|gb|ACI54284.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304]
Length = 159
Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats.
Identities = 103/158 (65%), Positives = 131/158 (82%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KVV++NRKAR+NY I+ ++EAG+VL GTEVKSLR K NI++SYA+ E
Sbjct: 1 MAPKGSQRVVNKVVAENRKARFNYEIIDTYEAGLVLMGTEVKSLREGKANIAESYASDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R+GMTL+P+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNREGMTLIPLKIYFNDR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+++
Sbjct: 121 GRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 158
>gi|86357020|ref|YP_468912.1| SsrA-binding protein [Rhizobium etli CFN 42]
gi|190891065|ref|YP_001977607.1| ssrA-binding (tmRNA-binding) protein [Rhizobium etli CIAT 652]
gi|218514125|ref|ZP_03510965.1| SsrA-binding protein [Rhizobium etli 8C-3]
gi|123512471|sp|Q2KAF1|SSRP_RHIEC RecName: Full=SsrA-binding protein
gi|238692511|sp|B3PUN0|SSRP_RHIE6 RecName: Full=SsrA-binding protein
gi|86281122|gb|ABC90185.1| ssrA-binding (tmRNA-binding) protein [Rhizobium etli CFN 42]
gi|190696344|gb|ACE90429.1| ssrA-binding (tmRNA-binding) protein [Rhizobium etli CIAT 652]
gi|327191316|gb|EGE58349.1| SsrA-binding protein [Rhizobium etli CNPAF512]
Length = 159
Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats.
Identities = 104/158 (65%), Positives = 132/158 (83%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KVV++NRKAR+NY I+ ++EAG+VL GTEVKSLR K NI++SYA+ E+
Sbjct: 1 MAPKGSQRVVNKVVAENRKARFNYEIIDTYEAGLVLKGTEVKSLREGKANIAESYASDED 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R+GMTLVP+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNREGMTLVPLKIYFNDR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+++
Sbjct: 121 GRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 158
>gi|256060776|ref|ZP_05450938.1| SsrA-binding protein [Brucella neotomae 5K33]
gi|261324766|ref|ZP_05963963.1| conserved hypothetical protein [Brucella neotomae 5K33]
gi|261300746|gb|EEY04243.1| conserved hypothetical protein [Brucella neotomae 5K33]
Length = 158
Score = 196 bits (500), Expect = 5e-49, Method: Composition-based stats.
Identities = 95/155 (61%), Positives = 132/155 (85%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++S+A+FE+ E
Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESHASFEDGEF 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G A
Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW+R+K R+LR+
Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157
>gi|241203881|ref|YP_002974977.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325]
gi|240857771|gb|ACS55438.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325]
Length = 159
Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats.
Identities = 103/158 (65%), Positives = 130/158 (82%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K+V++NRKAR+NY I+ ++EAGIVL GTEVKSLR K NI++SYA+ E
Sbjct: 1 MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGIVLMGTEVKSLREGKANIAESYASDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +A+ R+GMTL+P+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAINREGMTLIPLKIYFNDR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+ H
Sbjct: 121 GRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKAH 158
>gi|61216610|sp|Q7X2N6|SSRP_SPHEL RecName: Full=SsrA-binding protein
gi|32188217|gb|AAP46182.1| small protein B [Sphingomonas elodea]
Length = 160
Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats.
Identities = 83/147 (56%), Positives = 119/147 (80%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K V++NR+AR++Y I +++EAG+VLTGTEVKSLR + +I+++YA +++ +WL N+ IP
Sbjct: 13 KTVAENRRARFDYFIEQTYEAGLVLTGTEVKSLRFGEGSIAEAYAEVKDEXVWLVNANIP 72
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
E+ NRFNH +R RKLLL +REI++L+ AV R+GMTLVP+ +YFN KG AK++LALA+
Sbjct: 73 EFSHGNRFNHEAKRPRKLLLHEREINKLHGAVAREGMTLVPLSVYFNGKGRAKVELALAK 132
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRET K+RDW R++ RILR+
Sbjct: 133 GKKTHDKRETIKERDWKREQSRILRDR 159
>gi|153009967|ref|YP_001371182.1| SsrA-binding protein [Ochrobactrum anthropi ATCC 49188]
gi|166223233|sp|A6X299|SSRP_OCHA4 RecName: Full=SsrA-binding protein
gi|151561855|gb|ABS15353.1| SsrA-binding protein [Ochrobactrum anthropi ATCC 49188]
Length = 158
Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats.
Identities = 98/155 (63%), Positives = 132/155 (85%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FEN E
Sbjct: 3 KPKNSPVRKIIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQSNIAESYASFENGEF 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY Q NRFNH PRR RKLL+SKRE+ RL+ +V RDGMT+VP+K+YFN +G A
Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLISKREMSRLFNSVSRDGMTVVPLKLYFNDRGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW+R+K R++R+
Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLMRDK 157
>gi|159184582|ref|NP_354048.2| SsrA-binding protein [Agrobacterium tumefaciens str. C58]
gi|22096160|sp|Q8UGL2|SSRP_AGRT5 RecName: Full=SsrA-binding protein
gi|159139885|gb|AAK86833.2| SSRA-binding protein [Agrobacterium tumefaciens str. C58]
Length = 160
Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats.
Identities = 104/159 (65%), Positives = 133/159 (83%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K+V++NRKAR+NY I+ ++EAG+VLTGTEVKSLR K NI++SYA+ E
Sbjct: 1 MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DEIWL NS++PEYLQANRFNH PRR RKLLL+KREI+RL A + RDGMTLVP+K+YFN K
Sbjct: 61 DEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK++LALA+GKK +DKRETEK+RDW+RQK R+L+ ++
Sbjct: 121 GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNS 159
>gi|254717166|ref|ZP_05178977.1| SsrA-binding protein [Brucella ceti M13/05/1]
Length = 151
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 95/150 (63%), Positives = 129/150 (86%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E WL NS
Sbjct: 1 PARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEFWLINS 60
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
YIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G AK++LA
Sbjct: 61 YIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRAKLELA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK +DKRETEKKRDW+R+K R+LR+
Sbjct: 121 LARGKKTHDKRETEKKRDWNREKARLLRDR 150
>gi|325292405|ref|YP_004278269.1| SsrA-binding protein [Agrobacterium sp. H13-3]
gi|325060258|gb|ADY63949.1| SsrA-binding protein [Agrobacterium sp. H13-3]
Length = 160
Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats.
Identities = 103/159 (64%), Positives = 133/159 (83%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K+V++NRKAR+NY I+ ++EAG+VLTGTEVK+LR K NI++SYA+ E
Sbjct: 1 MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKALREGKANIAESYASDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DEIWL NS++PEYLQANRFNH PRR RKLLL+KREI+RL A + R+GMTLVP+K+YFN K
Sbjct: 61 DEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAGINREGMTLVPLKVYFNEK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK++LALA+GKK +DKRETEK+RDW+RQK R+L+ +N
Sbjct: 121 GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNN 159
>gi|254780275|ref|YP_003064688.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62]
gi|254039952|gb|ACT56748.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62]
Length = 159
Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats.
Identities = 159/159 (100%), Positives = 159/159 (100%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN
Sbjct: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK
Sbjct: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN
Sbjct: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
>gi|118587948|ref|ZP_01545358.1| SsrA-binding protein [Stappia aggregata IAM 12614]
gi|118439570|gb|EAV46201.1| SsrA-binding protein [Stappia aggregata IAM 12614]
Length = 159
Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats.
Identities = 96/159 (60%), Positives = 124/159 (77%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + G+P + ++SDNRKAR+NY I + EAGI L GTEVKSLR K NI++SYA
Sbjct: 1 MAPRKGGDPGRTIISDNRKARFNYEIEDTLEAGIELKGTEVKSLRNGKANIAESYAAEHQ 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIW+ N YIPEYLQANRFNH PRR RKLLL KREI +L AV+++G T+VP+K+YFN +
Sbjct: 61 GEIWIYNVYIPEYLQANRFNHEPRRPRKLLLHKREIGKLAGAVQKEGKTIVPLKLYFNEQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK++LALA+GKK +DKRETEKKRDW R+K R+++ +
Sbjct: 121 GRAKLELALARGKKLHDKRETEKKRDWQREKSRLMKNFS 159
>gi|328543508|ref|YP_004303617.1| SsrA-binding protein [Polymorphum gilvum SL003B-26A1]
gi|326413252|gb|ADZ70315.1| SsrA-binding protein [Polymorphum gilvum SL003B-26A1]
Length = 159
Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats.
Identities = 99/157 (63%), Positives = 123/157 (78%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ G + VV+DNRKAR+NY I FEAGI L GTEVKSLR K NI DSYA N
Sbjct: 1 MAAKNGGPAGRSVVADNRKARFNYEIEEVFEAGIELKGTEVKSLRTGKANIQDSYAAEHN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYIPEYLQANRFNH PRR R+LLL KR+I +L +AV+++G T+VP+K+YFN +
Sbjct: 61 GELWLYNSYIPEYLQANRFNHEPRRPRRLLLHKRQIGKLASAVQKEGKTIVPLKLYFNEQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK++LALA+GKK +DKRETEK RDW R+K R+L+
Sbjct: 121 GRAKLELALARGKKLHDKRETEKARDWQREKSRLLKN 157
>gi|15964813|ref|NP_385166.1| SsrA-binding protein [Sinorhizobium meliloti 1021]
gi|307309701|ref|ZP_07589353.1| SsrA-binding protein [Sinorhizobium meliloti BL225C]
gi|307320699|ref|ZP_07600111.1| SsrA-binding protein [Sinorhizobium meliloti AK83]
gi|22096167|sp|Q92R54|SSRP_RHIME RecName: Full=SsrA-binding protein
gi|15073992|emb|CAC45639.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306893626|gb|EFN24400.1| SsrA-binding protein [Sinorhizobium meliloti AK83]
gi|306899913|gb|EFN30536.1| SsrA-binding protein [Sinorhizobium meliloti BL225C]
Length = 159
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 102/158 (64%), Positives = 129/158 (81%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KKVV++NRKAR+NY IV ++EAG+VLTGTEVKSLR K NI++SYAT E
Sbjct: 1 MAPKGSERTVKKVVAENRKARFNYEIVDTYEAGLVLTGTEVKSLREGKANIAESYATDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH RR RKLLLSKRE++RL AV R+GM+L+P++IYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHETRRRRKLLLSKREVNRLQGAVNREGMSLIPLRIYFNER 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LAL +GKK +DKRET K+RDW+RQK+R+L+E
Sbjct: 121 GRVKLELALGKGKKLHDKRETSKERDWNRQKNRLLKER 158
>gi|227821395|ref|YP_002825365.1| SsrA-binding protein [Sinorhizobium fredii NGR234]
gi|254778375|sp|C3M8R6|SSRP_RHISN RecName: Full=SsrA-binding protein
gi|227340394|gb|ACP24612.1| putative SsrA-binding protein [Sinorhizobium fredii NGR234]
Length = 159
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 104/158 (65%), Positives = 130/158 (82%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +KVV++NRKAR+NY IV ++EAG+VLTGTEVKSLR K NIS+SYAT E
Sbjct: 1 MAQKGSERTIRKVVAENRKARFNYEIVDTYEAGLVLTGTEVKSLREGKANISESYATDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH RR RKLLLSKRE++RL AV R+GM+L+P+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHETRRRRKLLLSKREVNRLQGAVNREGMSLIPLKIYFNDR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LAL +GKK +DKRET K+RDW+RQK+R+L+E
Sbjct: 121 GRAKLELALGKGKKLHDKRETSKERDWNRQKNRLLKER 158
>gi|222085383|ref|YP_002543913.1| ssrA-binding (tmRNA-binding) protein [Agrobacterium radiobacter
K84]
gi|254772989|sp|B9JC66|SSRP_AGRRK RecName: Full=SsrA-binding protein
gi|221722831|gb|ACM25987.1| ssrA-binding (tmRNA-binding) protein [Agrobacterium radiobacter
K84]
Length = 159
Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats.
Identities = 101/158 (63%), Positives = 130/158 (82%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KK+V++NRKAR+NY I+ ++EAGIVL GTEVKSLR K NI++SYA+ E+
Sbjct: 1 MAPKGSQRVVKKIVAENRKARFNYEIIDTYEAGIVLMGTEVKSLREGKANIAESYASDED 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLLS REI RL + + R+GMTL+P+KIYFN
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIGRLRSGINREGMTLIPLKIYFNDN 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK +DKR++EK+RDW+RQK RIL+++
Sbjct: 121 GRAKLELALAKGKKLHDKRQSEKERDWNRQKGRILKDN 158
>gi|254228628|ref|ZP_04922052.1| SsrA-binding protein, putative [Vibrio sp. Ex25]
gi|151938807|gb|EDN57641.1| SsrA-binding protein, putative [Vibrio sp. Ex25]
Length = 330
Score = 194 bits (493), Expect = 3e-48, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY
Sbjct: 170 MAKKKTKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANISESYVFMR 229
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L+ V R+GMTL + +Y++
Sbjct: 230 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRVNREGMTLTALSLYWS 289
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 290 -RSWVKLKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 326
>gi|83589144|ref|YP_429153.1| SsrA-binding protein [Moorella thermoacetica ATCC 39073]
gi|123525142|sp|Q2RLS9|SSRP_MOOTA RecName: Full=SsrA-binding protein
gi|83572058|gb|ABC18610.1| SsrA-binding protein [Moorella thermoacetica ATCC 39073]
Length = 155
Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats.
Identities = 84/147 (57%), Positives = 107/147 (72%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+DNR+AR++Y I ++EAGI LTGTEVKSLR + NI DSYA EN E+ L + +I
Sbjct: 6 KVVTDNRRARHDYFIEETYEAGIALTGTEVKSLRNGRANIKDSYARVENGELILHDMHIS 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH PRR R+LL+ + EI RLY VR G+TL+P+K+YFN +GLAK++LAL +
Sbjct: 66 PYEQGNRFNHEPRRPRRLLMHRYEIQRLYGKVREKGLTLIPLKVYFNERGLAKVELALVK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK+ YDKRE RD R+ R LRE
Sbjct: 126 GKRLYDKREDIAARDAQREIARALRER 152
>gi|49475296|ref|YP_033337.1| SsrA-binding protein [Bartonella henselae str. Houston-1]
gi|61216509|sp|Q6G467|SSRP_BARHE RecName: Full=SsrA-binding protein
gi|49238102|emb|CAF27309.1| SSRA-binding protein [Bartonella henselae str. Houston-1]
Length = 158
Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats.
Identities = 97/155 (62%), Positives = 127/155 (81%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P +K+++DNRKAR+NY I+ + EAG+VL G EVKSLR + NI++SYA+FEN E+
Sbjct: 3 KKKNAPVRKIIADNRKARFNYEILDNLEAGLVLQGAEVKSLRSNHANIAESYASFENGEL 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY QANRFNH PRR RKLL+SKRE+ R + A R+GMTLVP+K+YFN +G A
Sbjct: 63 WLVNSYIPEYTQANRFNHEPRRLRKLLISKREMARFFNATSREGMTLVPLKLYFNERGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRETEKKRDW R+K R+L+ +
Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWGREKARLLKRY 157
>gi|297562651|ref|YP_003681625.1| SsrA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
gi|296847099|gb|ADH69119.1| SsrA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei
DSM 43111]
Length = 154
Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats.
Identities = 70/150 (46%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K+++ NR+AR++YHI ++EAG+VLTGTEVKSLR + ++ D +A + E+WL N
Sbjct: 5 TGRKLIAQNRRARHDYHIDETYEAGLVLTGTEVKSLRQGRASLVDGFAHINDGEVWLENV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY Q NH RR+RKLLL + +I RL R G TLVP+ +YF+ G AK+++A
Sbjct: 65 HIPEYSQGTWTNHAARRSRKLLLHREQISRLIGKTREPGFTLVPLSLYFSD-GRAKVEIA 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK+ YDKR +R+ R R LR
Sbjct: 124 LARGKREYDKRHDIAEREAKRDMERALRRR 153
>gi|254504807|ref|ZP_05116958.1| SsrA-binding protein [Labrenzia alexandrii DFL-11]
gi|222440878|gb|EEE47557.1| SsrA-binding protein [Labrenzia alexandrii DFL-11]
Length = 159
Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 97/157 (61%), Positives = 121/157 (77%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K G+P + ++SDNRKAR+NY I + EAGI L GTEVKSLR K NI +SYA
Sbjct: 1 MAPKKGGHPGRTIISDNRKARFNYEIEDTLEAGIELKGTEVKSLRTGKANIGESYAAEHK 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIW+ N YIPEYLQ NRFNH PRR RKLLL KREI +L AV++DG T+VP+K+YFN +
Sbjct: 61 GEIWIYNVYIPEYLQGNRFNHEPRRPRKLLLHKREIGKLAGAVQKDGKTIVPLKLYFNEQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK++LALA+GKK +DKRETEKKRDW R+K R+++
Sbjct: 121 GRAKLELALARGKKLHDKRETEKKRDWQREKSRLMKN 157
>gi|322420490|ref|YP_004199713.1| SsrA-binding protein [Geobacter sp. M18]
gi|320126877|gb|ADW14437.1| SsrA-binding protein [Geobacter sp. M18]
Length = 267
Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats.
Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I +EAG+VL GTEVKSLR K N++DS+A +N E +L N +
Sbjct: 112 GEKLICNNKKAFHDYFIEERYEAGMVLQGTEVKSLRSGKANLNDSFAMVKNGEAFLHNFH 171
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLLL K+EI +L++ +R G TL+P+++YF G K +L L
Sbjct: 172 INPYDFGNRENHDPDRMRKLLLHKKEIVKLFSKIREQGYTLIPLRVYFKE-GKVKAELGL 230
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKKNYDKRE K++D R ++E N
Sbjct: 231 AKGKKNYDKREVMKQKDMQRDVVVAMKERN 260
>gi|218658904|ref|ZP_03514834.1| SsrA-binding protein [Rhizobium etli IE4771]
Length = 156
Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats.
Identities = 103/155 (66%), Positives = 130/155 (83%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K KVV++NRKAR+NY I+ ++EAG+VLTGTEVKSLR K NI++SYA+ E EI
Sbjct: 1 KGSQRVVNKVVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEGGEI 60
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R+GMTL+P+KIYFN +G A
Sbjct: 61 WLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNREGMTLIPLKIYFNDRGRA 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRE+EK+RDW+RQK R+L+++
Sbjct: 121 KMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 155
>gi|110678280|ref|YP_681287.1| SsrA-binding protein [Roseobacter denitrificans OCh 114]
gi|109454396|gb|ABG30601.1| SsrA-binding protein, putative [Roseobacter denitrificans OCh 114]
Length = 220
Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 112/154 (72%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 66 SKSDPNYKVVAENRRARFDYAIESDVECGIILEGSEVKSLREGGANIAESYAAVEDGELW 125
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSYI Y QA F H RR RKLL+S++++ + A +R GMTLVP+ +YFN +G+AK
Sbjct: 126 LVNSYIAPYKQAKTFQHEERRRRKLLISRKQLSDFWNATQRKGMTLVPLVLYFNHRGMAK 185
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R++++H
Sbjct: 186 IKIGVAKGKKLHDKRETAAKRDWSRQKSRLMKDH 219
>gi|326387213|ref|ZP_08208823.1| SsrA-binding protein [Novosphingobium nitrogenifigens DSM 19370]
gi|326208394|gb|EGD59201.1| SsrA-binding protein [Novosphingobium nitrogenifigens DSM 19370]
Length = 160
Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats.
Identities = 86/148 (58%), Positives = 115/148 (77%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+V++NR+AR++Y+I +EAGIVLTGTEVKSLR + +I++SYA +N E+WL NS +
Sbjct: 12 KKIVAENRRARFDYYIEDVYEAGIVLTGTEVKSLRFGEGSIAESYAEVKNGEVWLINSNV 71
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PE+ NRFNH P+R RKLLL +REI R + AV R GMTLVP+ +YFN +G AK++LALA
Sbjct: 72 PEFSHGNRFNHEPKRPRKLLLKEREIDRFHGAVERKGMTLVPLSVYFNGRGRAKVELALA 131
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK DKR + K+RDW R K RI+R+H
Sbjct: 132 RGKNAADKRASIKERDWKRDKARIMRDH 159
>gi|222148073|ref|YP_002549030.1| SsrA-binding protein [Agrobacterium vitis S4]
gi|254772990|sp|B9JUM9|SSRP_AGRVS RecName: Full=SsrA-binding protein
gi|221735061|gb|ACM36024.1| SSRA-binding protein [Agrobacterium vitis S4]
Length = 158
Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats.
Identities = 102/156 (65%), Positives = 131/156 (83%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K+V++NRKAR+NY I+ ++EAGI+LTGTEVKSLR K NI++SYA+ E
Sbjct: 1 MAPRGSQRTVNKIVAENRKARFNYEIIDTYEAGIMLTGTEVKSLREGKANIAESYASDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+EIWL NS++PEYLQANRFNH PRR RKLLL+KREI+RL A+ R+GMTLVP+KIYFN K
Sbjct: 61 EEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRVAINREGMTLVPLKIYFNEK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
G AK++LALA+GKK +DKRETEK+RDW+RQK R+L+
Sbjct: 121 GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLK 156
>gi|332185064|ref|ZP_08386813.1| ssrA-binding protein [Sphingomonas sp. S17]
gi|332014788|gb|EGI56844.1| ssrA-binding protein [Sphingomonas sp. S17]
Length = 159
Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats.
Identities = 86/158 (54%), Positives = 122/158 (77%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + KK+V++NR+AR++Y I ++EAGI LTGTEVKSLR + +I++SYA
Sbjct: 1 MRPKPQTFDKKKIVAENRRARFDYAIETTYEAGIALTGTEVKSLRFGEGSIAESYAEVRG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E+WL NS +PE+ NRFNH +R RKLLL +REI++L+ AV R+GMTLVP+ IYFN++
Sbjct: 61 EEVWLVNSNVPEFSHGNRFNHEAKRPRKLLLHEREINKLHGAVAREGMTLVPLMIYFNSR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK +DKR++ K+RDW R++ RILR+
Sbjct: 121 GRAKVELALAKGKKAHDKRDSIKERDWKREQGRILRDR 158
>gi|261218983|ref|ZP_05933264.1| small protein B [Brucella ceti M13/05/1]
gi|260924072|gb|EEX90640.1| small protein B [Brucella ceti M13/05/1]
Length = 147
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 93/145 (64%), Positives = 125/145 (86%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E WL NSYIPEY
Sbjct: 2 IAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEFWLINSYIPEY 61
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G AK++LALA+GK
Sbjct: 62 TQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRAKLELALARGK 121
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
K +DKRETEKKRDW+R+K R+LR+
Sbjct: 122 KTHDKRETEKKRDWNREKARLLRDR 146
>gi|13476429|ref|NP_107999.1| SsrA-binding protein [Mesorhizobium loti MAFF303099]
gi|22096172|sp|Q985B9|SSRP_RHILO RecName: Full=SsrA-binding protein
gi|14027190|dbj|BAB54144.1| SSRA-binding protein [Mesorhizobium loti MAFF303099]
Length = 159
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 97/158 (61%), Positives = 126/158 (79%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +P K V++NRKAR++Y ++ + EAG+VLTGTEVKSLR + NI DSYA+ E
Sbjct: 1 MNQVRKADPNNKTVAENRKARFSYEVLDTIEAGLVLTGTEVKSLRQGQANIQDSYASVEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLL+KRE+ +L +V R+GMTLVP+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLNKREMAKLSQSVDREGMTLVPLKIYFNDQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ LA+ +GKK +DKRETEK+RDW R+K R+L+E
Sbjct: 121 GRAKLLLAVGRGKKLHDKRETEKQRDWSREKGRLLKER 158
>gi|149912743|ref|ZP_01901277.1| SsrA-binding protein [Roseobacter sp. AzwK-3b]
gi|149813149|gb|EDM72975.1| SsrA-binding protein [Roseobacter sp. AzwK-3b]
Length = 158
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + NP KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYAT +N
Sbjct: 1 MA-KPKDNPNYKVVAENRRARFDYAIEDDLECGIILEGSEVKSLRQGGANIAESYATVDN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N+Y+ Y QA F H RR RKLL+S++E+ RL+ +R GMTLVP+ +YFN +
Sbjct: 60 GELWLINAYVAPYEQAKTFQHEERRRRKLLVSRKELARLWNETQRKGMTLVPLVLYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G+AK+ + +A+GKK +DKRET+ KRDW RQK R+L+E+N
Sbjct: 120 GMAKLKIGIAKGKKTHDKRETQAKRDWQRQKQRLLKENN 158
>gi|72162875|ref|YP_290532.1| SsrA-binding protein [Thermobifida fusca YX]
gi|123628874|sp|Q47M13|SSRP_THEFY RecName: Full=SsrA-binding protein
gi|71916607|gb|AAZ56509.1| SsrA-binding protein [Thermobifida fusca YX]
Length = 160
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPK--KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + + + K ++ NR+AR++YHI ++EAG+VLTGTEVKSLR + ++ D +A
Sbjct: 1 MARKKKQDKGQGPKTIAQNRRARHDYHIEDTYEAGLVLTGTEVKSLRAGRASLVDGFAQI 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+N E+WL N +IPEY NH PRR RKLLL + EI +L A R G TLVP+ +YF
Sbjct: 61 KNGEVWLHNVHIPEYTMGTWTNHAPRRPRKLLLHREEIAKLDAKTREAGRTLVPLSLYFR 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+GK+ YDKR +R+ R+ R LR
Sbjct: 121 -NGRAKVEIALARGKREYDKRHDIAEREAKREMERALRRR 159
>gi|163760603|ref|ZP_02167684.1| SsrA-binding protein [Hoeflea phototrophica DFL-43]
gi|162282218|gb|EDQ32508.1| SsrA-binding protein [Hoeflea phototrophica DFL-43]
Length = 160
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 104/159 (65%), Positives = 127/159 (79%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPK-KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K++ KVV++NRKAR+NY IV +FE G+VLTGTEVKSLR K NI++SYA E
Sbjct: 1 MAPKNQDKSQHGKVVAENRKARFNYEIVDTFETGLVLTGTEVKSLREGKANIAESYANEE 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL NSY+PEYLQANRFNH RR RK+LL REI RL AV+RDGMTLVP+KIYFN
Sbjct: 61 GGEMWLINSYVPEYLQANRFNHETRRRRKILLKAREIARLGQAVQRDGMTLVPLKIYFND 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG AK+ LALA+GKK +DKRET+K+RDW+RQK R+LR+
Sbjct: 121 KGRAKLQLALAKGKKLHDKRETQKERDWNRQKSRLLRDR 159
>gi|149184394|ref|ZP_01862712.1| SsrA-binding protein [Erythrobacter sp. SD-21]
gi|148831714|gb|EDL50147.1| SsrA-binding protein [Erythrobacter sp. SD-21]
Length = 160
Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K +K V+DNR+ R++YH+ +FEAG+ L GTEVK+LR + +I +SYA
Sbjct: 1 MARPKPATFDKQKTVADNRRVRFDYHVEETFEAGLALQGTEVKALRAGEASIKESYAEVR 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ ++WL N+ IPEY NR NH PRR RKLLL REI +L+ AV R GMTLVP+ IYFN+
Sbjct: 61 DGQVWLINANIPEYSHGNRLNHEPRRPRKLLLHSREIEKLFGAVERKGMTLVPLSIYFNS 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GK+ +DKR+T K RDW R K R++RE
Sbjct: 121 TGRAKVELALAKGKQAHDKRQTIKDRDWKRDKARLMREK 159
>gi|319404009|emb|CBI77597.1| SsrA-binding protein [Bartonella rochalimae ATCC BAA-1498]
gi|319407021|emb|CBI80658.1| SsrA-binding protein [Bartonella sp. 1-1C]
Length = 159
Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats.
Identities = 94/158 (59%), Positives = 126/158 (79%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +KV++DNRKAR+N+ I+ + E GIVL GTEVKSLR + NIS+SYA+FE
Sbjct: 1 MNNKKKTASIRKVIADNRKARFNFEILDTLEVGIVLQGTEVKSLRSNHANISESYASFEK 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NS+IPEY QANRFNH RR RKLLLSKRE+ R + A+ R+GMT+ P+K+YFN +
Sbjct: 61 GELWLINSHIPEYTQANRFNHDARRLRKLLLSKREMARFFNAISREGMTITPLKLYFNER 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++ALA+GKK +DKRETEKKRDW+R+K R+ R++
Sbjct: 121 GRVKLEIALARGKKLHDKRETEKKRDWEREKARLFRKY 158
>gi|16125447|ref|NP_420011.1| SsrA-binding protein [Caulobacter crescentus CB15]
gi|221234191|ref|YP_002516627.1| SsrA-binding protein [Caulobacter crescentus NA1000]
gi|22096176|sp|Q9A8Z9|SSRP_CAUCR RecName: Full=SsrA-binding protein
gi|254778350|sp|B8H482|SSRP_CAUCN RecName: Full=SsrA-binding protein
gi|13422521|gb|AAK23179.1| small protein B [Caulobacter crescentus CB15]
gi|220963363|gb|ACL94719.1| SsrA-binding protein [Caulobacter crescentus NA1000]
Length = 152
Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats.
Identities = 83/146 (56%), Positives = 115/146 (78%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K +++NR+AR++Y I +FEAGI+LTGTEVKSLR + NI++SYA+ E EI L N+ I
Sbjct: 2 SKPIAENRRARFDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADI 61
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
P Y ANRFNH PRR+RKLLL +R+I +L AV+R+G TLVP+K+Y+N KGLAK+++ LA
Sbjct: 62 PPYGHANRFNHEPRRHRKLLLHRRQIDKLIGAVQREGRTLVPIKLYWNDKGLAKLEVGLA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156
+GKK +DKR+T +RDW R K R+++
Sbjct: 122 KGKKLHDKRDTAAERDWQRDKARLMK 147
>gi|53803227|ref|YP_115024.1| SsrA-binding protein [Methylococcus capsulatus str. Bath]
gi|61216454|sp|Q604C6|SSRP_METCA RecName: Full=SsrA-binding protein
gi|53756988|gb|AAU91279.1| SsrA-binding protein [Methylococcus capsulatus str. Bath]
Length = 157
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + P ++ NR+A + Y I EAG+VL G EVKSLR K + +S+ +N
Sbjct: 1 MSSK-KSAPGSANIAQNRQATHEYFIEERLEAGLVLEGWEVKSLRAGKAQLKESFVMLKN 59
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++ + P R+RKLLL E+ RL V R G TLVP+ +Y+
Sbjct: 60 GEAWLFGAHFSPLPSASTHVQPDPTRSRKLLLHAEELSRLIGQVERKGYTLVPLSLYWKQ 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+++ LA+GKK +DKR EK+RDW+R+K R++R
Sbjct: 120 -GRAKLEIGLARGKKQHDKRAAEKERDWEREKQRVMRR 156
>gi|294013271|ref|YP_003546731.1| SsrA-binding protein [Sphingobium japonicum UT26S]
gi|307295014|ref|ZP_07574856.1| SsrA-binding protein [Sphingobium chlorophenolicum L-1]
gi|292676601|dbj|BAI98119.1| SsrA-binding protein [Sphingobium japonicum UT26S]
gi|306879488|gb|EFN10706.1| SsrA-binding protein [Sphingobium chlorophenolicum L-1]
Length = 160
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 85/148 (57%), Positives = 115/148 (77%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+V++NR+AR+ Y + FEAGI L GTEVKSLR + NI++SYA + +++WL NS I
Sbjct: 12 KKIVAENRRARFEYFLEDVFEAGIALQGTEVKSLRFGEGNIAESYAEVKGEQVWLVNSNI 71
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PE+ NRFNH P+R RKLLL +REI R++ AV R GMTLVP+ IYFN++G AK++LALA
Sbjct: 72 PEFSHGNRFNHEPKRPRKLLLHQREIARMHGAVERKGMTLVPLSIYFNSRGKAKVELALA 131
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR+T K+RDW R + RI++ H
Sbjct: 132 KGKKTHDKRDTIKERDWKRDQQRIMKAH 159
>gi|312115359|ref|YP_004012955.1| SsrA-binding protein [Rhodomicrobium vannielii ATCC 17100]
gi|311220488|gb|ADP71856.1| SsrA-binding protein [Rhodomicrobium vannielii ATCC 17100]
Length = 158
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 93/148 (62%), Positives = 121/148 (81%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+KVV++NRKAR++Y I +FE GI L G+EVKSLR K NI++SYAT + EI+L N+YI
Sbjct: 10 RKVVAENRKARFSYFIDDTFEVGIALGGSEVKSLRQGKANIAESYATAQGSEIFLINAYI 69
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PEYLQANR NH RR RKLLL KRE+++L A+ R+GMTLVP++IYFN +G AK++LALA
Sbjct: 70 PEYLQANRLNHETRRPRKLLLHKREVNKLMGAIHREGMTLVPLRIYFNDRGRAKLELALA 129
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRETEK RDW+RQK R++R+
Sbjct: 130 RGKKLHDKRETEKNRDWERQKGRLMRDR 157
>gi|163867984|ref|YP_001609188.1| SsrA-binding protein [Bartonella tribocorum CIP 105476]
gi|240850189|ref|YP_002971582.1| SsrA-binding protein [Bartonella grahamii as4aup]
gi|189046818|sp|A9IRK6|SSRP_BART1 RecName: Full=SsrA-binding protein
gi|161017635|emb|CAK01193.1| SsrA-binding protein [Bartonella tribocorum CIP 105476]
gi|240267312|gb|ACS50900.1| SsrA-binding protein [Bartonella grahamii as4aup]
Length = 158
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 96/155 (61%), Positives = 126/155 (81%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P +K+++DNRKAR+N+ I+ + EAG+VL G EVKSLR + NI++SYA+FEN E+
Sbjct: 3 KKKNAPVRKIIADNRKARFNFEILNNLEAGLVLQGAEVKSLRSNHANIAESYASFENGEL 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY QANRFNH PRR RKLLLSKRE+ R + A R+GMTLVP+K+YFN +G
Sbjct: 63 WLVNSYIPEYTQANRFNHEPRRLRKLLLSKREMARFFNATSREGMTLVPLKLYFNERGRV 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRETEKKRDW R+K R+L+ +
Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWGREKARLLKRY 157
>gi|260462336|ref|ZP_05810544.1| SsrA-binding protein [Mesorhizobium opportunistum WSM2075]
gi|259031830|gb|EEW33098.1| SsrA-binding protein [Mesorhizobium opportunistum WSM2075]
Length = 159
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 96/158 (60%), Positives = 125/158 (79%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +P K V++NRKAR++Y ++ + E G+VLTGTEVKSLR + NI DSYA+ E
Sbjct: 1 MNQVRKADPNNKTVAENRKARFSYEVLDTIETGLVLTGTEVKSLRQGQANIQDSYASVEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLL+KRE+ +L +V R+GMTLVP+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLNKREMAKLAQSVDREGMTLVPLKIYFNDQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ LA+ +GKK +DKRETEK+RDW R+K R+L+E
Sbjct: 121 GRAKLLLAVGRGKKLHDKRETEKQRDWSREKGRLLKER 158
>gi|148553440|ref|YP_001261022.1| SsrA-binding protein [Sphingomonas wittichii RW1]
gi|166223458|sp|A5V3L8|SSRP_SPHWW RecName: Full=SsrA-binding protein
gi|148498630|gb|ABQ66884.1| SsrA-binding protein [Sphingomonas wittichii RW1]
Length = 160
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 84/148 (56%), Positives = 118/148 (79%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKVV++NR+AR++Y + + FEAGI LTGTEVKSLR + +I++SYA ++D++WL NS +
Sbjct: 12 KKVVAENRRARFDYFLEQFFEAGIALTGTEVKSLRFGEGSIAESYAEVKDDQVWLVNSNV 71
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PE+ NRFNH P+R RKLLL REI ++ V R+GMTL+P+ IYFN +G AK++LALA
Sbjct: 72 PEFSHGNRFNHEPKRPRKLLLHAREIDKMRNGVSREGMTLIPLSIYFNGRGRAKVELALA 131
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR+TEK+RDW R++ R+LR+
Sbjct: 132 KGKKLHDKRDTEKERDWKREQQRLLRDR 159
>gi|323701506|ref|ZP_08113179.1| SsrA-binding protein [Desulfotomaculum nigrificans DSM 574]
gi|323533515|gb|EGB23381.1| SsrA-binding protein [Desulfotomaculum nigrificans DSM 574]
Length = 162
Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats.
Identities = 83/159 (52%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPP-KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS K + K +++NR+AR+ YHI+ ++EAGI LTGTEVKSLR K N+ DSYA +
Sbjct: 1 MSAKPAASTKVLKTITENRRARHEYHILETYEAGIALTGTEVKSLRAGKANLQDSYARVD 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E+ L N +I Y Q NRFNH P+R R+LL+ K+EI RL+ VR G+ LVP+K+YFN
Sbjct: 61 NGEMMLYNMHISPYEQGNRFNHDPKRTRRLLMHKQEIMRLFGKVREKGLALVPLKVYFNP 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G K++LALAQGKK+YDKR+ RD R+ R +RE
Sbjct: 121 RGRVKVELALAQGKKSYDKRQDIAARDAKREMDRAIRER 159
>gi|116251269|ref|YP_767107.1| SsrA-binding protein [Rhizobium leguminosarum bv. viciae 3841]
gi|187629779|sp|Q1MJ62|SSRP_RHIL3 RecName: Full=SsrA-binding protein
gi|115255917|emb|CAK06998.1| putative RNA binding protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 151
Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats.
Identities = 102/147 (69%), Positives = 127/147 (86%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV++NRKAR+NY I+ ++EAGIVL GTEVKSLR K NI++SYA+ E EIWL NSY+P
Sbjct: 4 KVVAENRKARFNYEIIDTYEAGIVLMGTEVKSLREGKANIAESYASDEGGEIWLINSYLP 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EYLQANRFNH PRR RKLLLS REIHRL +A+ R+GMTL+P+KIYFN +G AK++LALA+
Sbjct: 64 EYLQANRFNHEPRRRRKLLLSGREIHRLRSAINREGMTLIPLKIYFNDRGRAKMELALAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRE+EK+RDW+RQK R+L+ H
Sbjct: 124 GKKLHDKRESEKERDWNRQKSRLLKAH 150
>gi|150395898|ref|YP_001326365.1| SsrA-binding protein [Sinorhizobium medicae WSM419]
gi|166223457|sp|A6U7A0|SSRP_SINMW RecName: Full=SsrA-binding protein
gi|150027413|gb|ABR59530.1| SsrA-binding protein [Sinorhizobium medicae WSM419]
Length = 159
Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats.
Identities = 102/158 (64%), Positives = 130/158 (82%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KKVV++NRKAR+NY IV ++EAG+VLTGTEVKSLR K NI++SYAT E
Sbjct: 1 MAPKGSERTVKKVVAENRKARFNYEIVDTYEAGLVLTGTEVKSLREGKANIAESYATDEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH RR RKLLLS+RE++RL AV R+GM+L+P++IYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHETRRRRKLLLSRREVNRLQGAVNREGMSLIPLRIYFNER 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LAL +GKK +DKRET K+RDW+RQK+R+L+E
Sbjct: 121 GRAKLELALGKGKKLHDKRETSKERDWNRQKNRLLKER 158
>gi|254511379|ref|ZP_05123446.1| SsrA-binding protein [Rhodobacteraceae bacterium KLH11]
gi|221535090|gb|EEE38078.1| SsrA-binding protein [Rhodobacteraceae bacterium KLH11]
Length = 160
Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats.
Identities = 83/160 (51%), Positives = 118/160 (73%), Gaps = 1/160 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + +P KV+++NR+AR++Y I E GIVL G+EVKSLRV NI++SYA+ +
Sbjct: 1 MAKQKQKTDPNYKVIAENRRARFDYAIEEDIECGIVLEGSEVKSLRVGGSNIAESYASVD 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN
Sbjct: 61 DGELWLVNSYIAPYEQAKVFKHEERRRRKLLVSRKELSNLWNATQRKGMTLVPLVLYFNH 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KG AK+ + +A+GKK +DKRET+ KRDW RQK R++++H+
Sbjct: 121 KGRAKLKIGIAKGKKLHDKRETQAKRDWSRQKQRLMKDHS 160
>gi|319784515|ref|YP_004143991.1| SsrA-binding protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317170403|gb|ADV13941.1| SsrA-binding protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 159
Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats.
Identities = 97/158 (61%), Positives = 126/158 (79%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +P K VS+NRKAR++Y ++ + EAG+VLTGTEVKSLR + NI DSYA+ E
Sbjct: 1 MNQVRKADPNNKTVSENRKARFSYEVLDTVEAGLVLTGTEVKSLRQGQANIQDSYASVEG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NSY+PEYLQANRFNH PRR RKLLL+KRE+ +L +V R+GMTLVP+KIYFN +
Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLNKREMAKLSQSVDREGMTLVPLKIYFNDQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ LA+ +GKK +DKRE+EK+RDW R+K R+L+E
Sbjct: 121 GRAKLLLAVGRGKKLHDKRESEKQRDWSREKGRLLKER 158
>gi|87199465|ref|YP_496722.1| SsrA-binding protein [Novosphingobium aromaticivorans DSM 12444]
gi|123489750|sp|Q2G8D5|SSRP_NOVAD RecName: Full=SsrA-binding protein
gi|87135146|gb|ABD25888.1| SsrA-binding protein [Novosphingobium aromaticivorans DSM 12444]
Length = 160
Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats.
Identities = 85/148 (57%), Positives = 114/148 (77%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKVV++NR+AR+ Y I ++EAGI LTGTEVKSLR + +I++SYA +N E+WL NS +
Sbjct: 12 KKVVAENRRARFEYFIEETYEAGICLTGTEVKSLRFGEGSIAESYAEVKNGEVWLVNSNV 71
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PE+ NRFNH P+R RKLLL +R+I + AV R GMTLVP+ IYFN++G AK++LALA
Sbjct: 72 PEFSHGNRFNHVPKRPRKLLLKERQIAKFTGAVERKGMTLVPLSIYFNSRGRAKVELALA 131
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK DKR T K+RDW R+K RI+++H
Sbjct: 132 KGKNAADKRTTIKERDWKREKARIMKDH 159
>gi|163737157|ref|ZP_02144575.1| SsrA-binding protein [Phaeobacter gallaeciensis BS107]
gi|163740430|ref|ZP_02147824.1| SsrA-binding protein [Phaeobacter gallaeciensis 2.10]
gi|161386288|gb|EDQ10663.1| SsrA-binding protein [Phaeobacter gallaeciensis 2.10]
gi|161389761|gb|EDQ14112.1| SsrA-binding protein [Phaeobacter gallaeciensis BS107]
Length = 158
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 87/159 (54%), Positives = 120/159 (75%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P KV+++NR+AR++Y I E GI+L G+EVKSLRV NI++SYAT ++
Sbjct: 1 MA-KQKSDPNYKVIAENRRARFDYAIEDDLECGILLEGSEVKSLRVGGTNIAESYATVDD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN +
Sbjct: 60 GELWLVNSYIAPYEQAKMFRHEERRRRKLLVSRKELSNLWNATQRKGMTLVPLVMYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
GLAKI + +A+GKKN+DKRETE KRDW RQK R+L++H+
Sbjct: 120 GLAKIKIGIAKGKKNHDKRETEAKRDWSRQKQRLLKDHS 158
>gi|83942204|ref|ZP_00954666.1| SsrA-binding protein [Sulfitobacter sp. EE-36]
gi|83848024|gb|EAP85899.1| SsrA-binding protein [Sulfitobacter sp. EE-36]
Length = 182
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 82/154 (53%), Positives = 112/154 (72%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 28 SKSDPNYKVIAENRRARFDYAIDDDVECGIILEGSEVKSLRNGGANIAESYAAVEDGELW 87
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSY+ Y QA F H RR RKLL+SK+E+ L+ +R GMTLVPM +YFN +G+AK
Sbjct: 88 LVNSYVAPYTQAKTFTHEERRRRKLLVSKKELSNLWNETQRKGMTLVPMVMYFNHRGMAK 147
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R+L++H
Sbjct: 148 IKIGIAKGKKLHDKRETAAKRDWSRQKQRLLKDH 181
>gi|254475532|ref|ZP_05088918.1| SsrA-binding protein [Ruegeria sp. R11]
gi|214029775|gb|EEB70610.1| SsrA-binding protein [Ruegeria sp. R11]
Length = 158
Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYAT ++
Sbjct: 1 MA-KQKTDPNYKVIAENRRARFDYAIEDDLECGILLEGSEVKSLRAGGSNIAESYATVDD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN +
Sbjct: 60 GELWLVNSYIAPYEQAKMFKHEERRRRKLLVSRKELSNLWNATQRKGMTLVPLVLYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GLAK+ + +A+GKKN+DKRE+E KRDW RQK R+L++H
Sbjct: 120 GLAKLKIGIAKGKKNHDKRESEAKRDWSRQKQRLLKDH 157
>gi|103487215|ref|YP_616776.1| SsrA-binding protein [Sphingopyxis alaskensis RB2256]
gi|122984973|sp|Q1GSC9|SSRP_SPHAL RecName: Full=SsrA-binding protein
gi|98977292|gb|ABF53443.1| SsrA-binding protein [Sphingopyxis alaskensis RB2256]
Length = 161
Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats.
Identities = 85/148 (57%), Positives = 115/148 (77%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKVV++NR+AR++Y I + FEAGI L GTEVKSLR + I++SYA E+WL N+ I
Sbjct: 13 KKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEVNGGEVWLINANI 72
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PE+ NRFNH P+R RKLLL+ REI++L+A V R GMTLVP+ +YFN++G AK++LALA
Sbjct: 73 PEFSHGNRFNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFNSRGRAKVELALA 132
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K+RDW R K R+L++
Sbjct: 133 KGKKAHDKRESIKERDWKRDKQRLLKDR 160
>gi|90424130|ref|YP_532500.1| SsrA-binding protein [Rhodopseudomonas palustris BisB18]
gi|122476202|sp|Q214K5|SSRP_RHOPB RecName: Full=SsrA-binding protein
gi|90106144|gb|ABD88181.1| SsrA-binding protein [Rhodopseudomonas palustris BisB18]
Length = 157
Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats.
Identities = 91/156 (58%), Positives = 120/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P KV+++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA ++ E
Sbjct: 1 MAEKNERPIKVIAENRKARFNYAIEDTLEAGIALTGTEVKSIRNGKSTIAESYADPKDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R GMTLVP+K+YFN +G
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLVPLKMYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ LALA+GK+ +DKR+TEKKRDW R+K RI+R
Sbjct: 121 VKLQLALAKGKQLHDKRDTEKKRDWSREKGRIMRAR 156
>gi|90420853|ref|ZP_01228758.1| SmpB, ssrA-binding protein [Aurantimonas manganoxydans SI85-9A1]
gi|90334828|gb|EAS48600.1| SmpB, ssrA-binding protein [Aurantimonas manganoxydans SI85-9A1]
Length = 157
Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats.
Identities = 89/157 (56%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + V ++NRKAR+NY I+ + EAG+VLTGTEVKSLR + +I++SYA+ E
Sbjct: 1 MAKKKKS-AGSNVAAENRKARFNYEILDTLEAGLVLTGTEVKSLREGRASIAESYASEEG 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NS +PEYLQANRFNH P+R RK+L+ + ++ RL +A+++DGMTLVP++IYFN +
Sbjct: 60 GELWLINSNLPEYLQANRFNHVPKRRRKILVHRTQLSRLASAIQKDGMTLVPLRIYFNDR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G+AK+ LALA+GK DKR+T K+RDW+RQK RIL+E
Sbjct: 120 GVAKLQLALARGKNAPDKRQTMKERDWNRQKQRILKE 156
>gi|260432112|ref|ZP_05786083.1| SsrA-binding protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260415940|gb|EEX09199.1| SsrA-binding protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 160
Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats.
Identities = 85/160 (53%), Positives = 117/160 (73%), Gaps = 1/160 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + +P KV+++NR+AR++Y I E GIVL G+EVKSLR NI++SYA E
Sbjct: 1 MAKQKQKTDPNYKVIAENRRARFDYAIEEDIECGIVLEGSEVKSLRAGGANIAESYAAVE 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E+WL NSYI Y QA F H RR RKLL+S++E+ L+AA +R GMTLVP+ +YFN
Sbjct: 61 DGELWLINSYIAPYEQAKAFKHEERRRRKLLVSRKELSNLWAATQRKGMTLVPLVLYFNH 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KG AK+ + +A+GKK +DKRET+ KRDW RQK R+L++H+
Sbjct: 121 KGRAKLKIGIAKGKKIHDKRETQAKRDWSRQKQRLLKDHS 160
>gi|220921479|ref|YP_002496780.1| SsrA-binding protein [Methylobacterium nodulans ORS 2060]
gi|254778369|sp|B8INF1|SSRP_METNO RecName: Full=SsrA-binding protein
gi|219946085|gb|ACL56477.1| SsrA-binding protein [Methylobacterium nodulans ORS 2060]
Length = 157
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 117/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++V+DNRKAR+NY I + EAGI LTGTEVKSLR K I ++YA DE
Sbjct: 1 MARKPDPGRRIVADNRKARFNYEITDTVEAGIALTGTEVKSLRGGKATIGEAYAGPSGDE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N+YIPEYL+ANRFNH +R R+LLL +R+I++ A +R+G T++P+KIYFN +G
Sbjct: 61 FFLFNAYIPEYLEANRFNHETKRPRRLLLHRRQINKFLGATQREGYTVIPLKIYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++L L +GKK +DKRET K+RDW R + R+LR+
Sbjct: 121 AKVELGLGRGKKLHDKRETAKERDWQRDRARLLRDK 156
>gi|121601796|ref|YP_988781.1| SsrA-binding protein [Bartonella bacilliformis KC583]
gi|166222361|sp|A1US28|SSRP_BARBK RecName: Full=SsrA-binding protein
gi|120613973|gb|ABM44574.1| SsrA-binding protein [Bartonella bacilliformis KC583]
Length = 158
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 94/155 (60%), Positives = 127/155 (81%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +K++++NRKAR+N+ ++ EAGIVL GTEVKSLR + NI++SYA+FEN+E+
Sbjct: 3 KKKNVLIRKIIAENRKARFNFELLEHLEAGIVLNGTEVKSLRSNHANIAESYASFENEEL 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL N++IPEY QANRFNH PRR RKLL+SKREI R + AV R+GMT+VP+K+YFN +G
Sbjct: 63 WLVNAHIPEYTQANRFNHEPRRLRKLLVSKREIGRFFNAVSREGMTIVPLKLYFNERGCV 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRETEKKRDW R+K R+LR +
Sbjct: 123 KLEIALARGKKIHDKRETEKKRDWGREKARLLRRY 157
>gi|114705493|ref|ZP_01438396.1| SsrA-binding protein [Fulvimarina pelagi HTCC2506]
gi|114538339|gb|EAU41460.1| SsrA-binding protein [Fulvimarina pelagi HTCC2506]
Length = 157
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 89/157 (56%), Positives = 123/157 (78%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + V ++NRKAR+NY I+ + EAG+ LTGTEVKSLR K +I+++YAT E
Sbjct: 1 MAKKKKS-SGSNVAAENRKARFNYAIIDTLEAGLQLTGTEVKSLRGGKASIAEAYATEEE 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NS +PEYLQANRFNH P+R RKLL+ + +++RL AV+RDGMTLVP+KIYFN +
Sbjct: 60 GELWLINSNLPEYLQANRFNHNPKRRRKLLVHRAQLNRLAGAVQRDGMTLVPLKIYFNER 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK++LALA+GK DKR+T K+R+W+RQK R++++
Sbjct: 120 GTAKLELALAKGKNAPDKRQTIKEREWNRQKQRLMKD 156
>gi|254469842|ref|ZP_05083247.1| SsrA-binding protein [Pseudovibrio sp. JE062]
gi|211961677|gb|EEA96872.1| SsrA-binding protein [Pseudovibrio sp. JE062]
Length = 158
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/157 (59%), Positives = 122/157 (77%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K G P +KVV+DNRKAR+NY I FEAGI L GTEVKSLR K NI++SYA
Sbjct: 1 MAAKKGGVPGRKVVADNRKARFNYEIEDVFEAGIELKGTEVKSLRQGKSNIAESYAAEYQ 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ + N YIPEY Q NRFNH PRR RKLL+ +RE+++L+AAV+++G T+VP+KIYFN
Sbjct: 61 GEMMVYNIYIPEYTQGNRFNHEPRRPRKLLMHRRELNKLFAAVQKEGKTIVPLKIYFNED 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+++ALA+GKK +DKR+TEK RDW+R+K R+L+
Sbjct: 121 GRAKMEVALARGKKAHDKRQTEKTRDWNREKQRLLKN 157
>gi|315122834|ref|YP_004063323.1| SsrA-binding protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
gi|313496236|gb|ADR52835.1| SsrA-binding protein [Candidatus Liberibacter solanacearum
CLso-ZC1]
Length = 159
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 138/158 (87%), Positives = 148/158 (93%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS KSR + KV+S+NRKARYNYHI+RS+EAGIVLTGTEVKSLRVSKVNIS+SYAT EN
Sbjct: 1 MSSKSRSDLSLKVISENRKARYNYHILRSYEAGIVLTGTEVKSLRVSKVNISESYATVEN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DEIWLTN+YIPEYLQANRFNH PRRNRKLLLSK+EI RL+AAVRRDGMTLVPMKIYFNAK
Sbjct: 61 DEIWLTNTYIPEYLQANRFNHSPRRNRKLLLSKKEIRRLHAAVRRDGMTLVPMKIYFNAK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GLAKIDLALAQGKKNYDKRETEKKRDWDRQK RI+RE
Sbjct: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKSRIMRER 158
>gi|254418033|ref|ZP_05031757.1| SsrA-binding protein [Brevundimonas sp. BAL3]
gi|196184210|gb|EDX79186.1| SsrA-binding protein [Brevundimonas sp. BAL3]
Length = 157
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 112/156 (71%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KV+++NR+AR++Y + + EAGI L GTE+K+LR + NI++SYA E E
Sbjct: 1 MAPQPQSKSKVIAENRRARFDYFLEDNIEAGIQLLGTEIKALRDGRANIAESYAAVEGRE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I L N+ IP Y QANRFNH PRR RKLLL +++I RL AV+RDG T++P+K+Y N G
Sbjct: 61 IVLINADIPPYKQANRFNHEPRRPRKLLLHRKQIDRLIGAVQRDGQTIIPLKLYLNDAGK 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+++ALA+GKK +DKRE +RDW R K R++R+
Sbjct: 121 AKLEIALAKGKKLHDKREASAERDWQRDKARLMRDK 156
>gi|158422868|ref|YP_001524160.1| SsrA-binding protein [Azorhizobium caulinodans ORS 571]
gi|187611470|sp|A8I0D5|SSRP_AZOC5 RecName: Full=SsrA-binding protein
gi|158329757|dbj|BAF87242.1| SsrA-binding protein [Azorhizobium caulinodans ORS 571]
Length = 160
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/158 (58%), Positives = 124/158 (78%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + P+KVV+DNR+AR++Y I FEAGI L GTEVK+LR K I +SYA +N
Sbjct: 2 MAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGKN 61
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSY+PEYL+ANRFNH PRR RKLL+ KR+IH+L AV R+GMT+VP+KIYFN +
Sbjct: 62 GELWLFNSYVPEYLEANRFNHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNEQ 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+G+K +DKRE K+RDW+R K R++R+
Sbjct: 122 GRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDR 159
>gi|315499956|ref|YP_004088759.1| ssra-binding protein [Asticcacaulis excentricus CB 48]
gi|315417968|gb|ADU14608.1| SsrA-binding protein [Asticcacaulis excentricus CB 48]
Length = 158
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 89/157 (56%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN-D 61
+ + KV++DNR+AR++Y + + EAGIVLTGTEVKSLR + NI++SY + EN D
Sbjct: 1 MAEKEQSNYKVIADNRRARFDYFLENNTEAGIVLTGTEVKSLRQGRANIAESYVSIENGD 60
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E+ L N+ IP Y ANRFNH PRR+RKLL+ +REI R AV+R+GMT+VP K+YFN KG
Sbjct: 61 ELVLINADIPHYGFANRFNHEPRRHRKLLMHRREIARFMIAVQREGMTIVPTKLYFNDKG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRETE KRDW R+K R+L++H
Sbjct: 121 RVKVEIALAKGKKLHDKRETEAKRDWGREKARLLKDH 157
>gi|163745363|ref|ZP_02152723.1| SsrA-binding protein [Oceanibulbus indolifex HEL-45]
gi|161382181|gb|EDQ06590.1| SsrA-binding protein [Oceanibulbus indolifex HEL-45]
Length = 162
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 113/154 (73%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 8 SKSDPNYKVIAENRRARFDYAIEEDIECGIILEGSEVKSLREGGANIAESYAAVEDGELW 67
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSY+ Y QA F H RR RKLL+S++++ L+ A +R GMTLVP+ +YFN +G+AK
Sbjct: 68 LVNSYVAPYRQAKTFQHEERRRRKLLISRKQLADLWNATQRKGMTLVPLVMYFNHRGMAK 127
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R+L++H
Sbjct: 128 IKIGVAKGKKLHDKRETAAKRDWSRQKQRLLKDH 161
>gi|209964807|ref|YP_002297722.1| SsrA-binding protein SsrA [Rhodospirillum centenum SW]
gi|209958273|gb|ACI98909.1| SsrA-binding protein SsrA [Rhodospirillum centenum SW]
Length = 158
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P ++ + NR+AR++Y I + EAGIVL GTEVKSLR + +I++SYA +N E
Sbjct: 1 MARADSAPGRIAAQNRRARFDYFIEDTLEAGIVLAGTEVKSLRSGRASINESYAGEQNGE 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L N+YIPEY F H RR RKLL+ R++ RL+A+++R+GMTLVP+ IYFN +G
Sbjct: 61 LFLFNAYIPEYQLAGQFFQHEVRRPRKLLVRSRQLGRLFASIQREGMTLVPLSIYFNDRG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LAK++L +A+GKK DKRETEK RDW R K R++R
Sbjct: 121 LAKVELGIAKGKKKGDKRETEKARDWQRDKARLMRAK 157
>gi|319405449|emb|CBI79068.1| SsrA-binding protein [Bartonella sp. AR 15-3]
Length = 159
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 95/158 (60%), Positives = 122/158 (77%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +KV++DNRKA +N+ I+ + E GIVL GTEVKSLR S NIS+SYA FE
Sbjct: 1 MNNKKKTASIRKVIADNRKAHFNFEILDTLEVGIVLQGTEVKSLRSSHANISESYAGFEK 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NS+IPEY QANRFNH RR RKLLLSKRE+ R + A R+GMT++P+K+YFN +
Sbjct: 61 GELWLINSHIPEYTQANRFNHEARRLRKLLLSKREMARFFNAASREGMTIIPLKLYFNEQ 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++AL +GKK +DKRETEKKRDW R+K R+LR H
Sbjct: 121 GRVKLEIALTRGKKLHDKRETEKKRDWGREKARLLRRH 158
>gi|260893341|ref|YP_003239438.1| SsrA-binding protein [Ammonifex degensii KC4]
gi|260865482|gb|ACX52588.1| SsrA-binding protein [Ammonifex degensii KC4]
Length = 150
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 76/149 (51%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P KV+ +NR+AR+ YHI+ ++EAGIVL GTEVKSLR + ++ DS+A EN E+WL N +
Sbjct: 2 PVKVICENRRARHEYHIMETYEAGIVLQGTEVKSLRAGRASLQDSFARVENGEVWLYNMH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q NR+NH P+R RKLLL KREI L+ R G+TL+P++ YF G AK++LAL
Sbjct: 62 ISPYEQGNRYNHDPKRPRKLLLHKREIMYLWGRTREKGLTLIPLRCYFKD-GRAKVELAL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK YD+R +R R+ R L+
Sbjct: 121 AKGKKLYDRRADLAERAARREMERALKRR 149
>gi|94496510|ref|ZP_01303086.1| SsrA-binding protein [Sphingomonas sp. SKA58]
gi|94423870|gb|EAT08895.1| SsrA-binding protein [Sphingomonas sp. SKA58]
Length = 169
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 82/149 (55%), Positives = 114/149 (76%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+V++NR+A++ Y + FEAGI L GTEVKSLR + NI++SYA + +++WL NS I
Sbjct: 21 KKIVAENRRAKFEYFLEDVFEAGIALQGTEVKSLRFGEGNIAESYAEVKGNQVWLVNSNI 80
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PE+ NRFNH +R RKLLL +REI R++ AV R GMTLVP+ +YFN++G K++LALA
Sbjct: 81 PEFSHGNRFNHESKRPRKLLLHEREIARMHGAVERKGMTLVPLALYFNSRGKVKVELALA 140
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKRET K+RDW R + RI++ H+
Sbjct: 141 KGKKTHDKRETIKERDWKRDQQRIMKAHS 169
>gi|167647047|ref|YP_001684710.1| SsrA-binding protein [Caulobacter sp. K31]
gi|189046821|sp|B0T1M3|SSRP_CAUSK RecName: Full=SsrA-binding protein
gi|167349477|gb|ABZ72212.1| SsrA-binding protein [Caulobacter sp. K31]
Length = 152
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 83/145 (57%), Positives = 114/145 (78%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K +++NR+ARY+Y I + EAG++LTGTEVKSLRV + NI++SYA+ E I L N+ IP
Sbjct: 3 KPIAENRRARYDYFIEETMEAGLMLTGTEVKSLRVGRANIAESYASVEGRTIKLINADIP 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y ANRFNH PRR+R LLL +++I +L AV+RDG TL+P+K+Y+N KGLAK+++ LA+
Sbjct: 63 PYGHANRFNHEPRRHRTLLLHRKQIDKLIGAVQRDGRTLIPLKLYWNEKGLAKLEIGLAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKKN+DKRETE RDW R K R+++
Sbjct: 123 GKKNHDKRETEAARDWQRDKARLMK 147
>gi|295690059|ref|YP_003593752.1| SsrA-binding protein [Caulobacter segnis ATCC 21756]
gi|295431962|gb|ADG11134.1| SsrA-binding protein [Caulobacter segnis ATCC 21756]
Length = 152
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 84/145 (57%), Positives = 115/145 (79%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K +++NR+ARY+Y I +FEAGI+LTGTEVKSLR + NI++SYA+ E EI L N+ IP
Sbjct: 3 KPIAENRRARYDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADIP 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y ANRFNH PRR+RKLLL +++I +L AV+R+G TL+P+K+Y+N KGLAK+++ LA+
Sbjct: 63 PYGHANRFNHEPRRHRKLLLHRKQIDKLIGAVQREGRTLIPIKLYWNEKGLAKLEVGLAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKRETE RDW R K R+++
Sbjct: 123 GKKLHDKRETEANRDWQRDKARLMK 147
>gi|259418084|ref|ZP_05742003.1| SsrA-binding protein [Silicibacter sp. TrichCH4B]
gi|259346990|gb|EEW58804.1| SsrA-binding protein [Silicibacter sp. TrichCH4B]
Length = 167
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + +P KV+++NR+AR++Y I + E GIVL G+EVKSLR NI++SYA E
Sbjct: 10 MA-QQKTDPNYKVIAENRRARFDYAIEQDLECGIVLEGSEVKSLRAGGSNIAESYAAVEE 68
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN +
Sbjct: 69 GELWLVNSYIAPYEQAKVFKHDERRRRKLLVSRKEMANLWNATQRKGMTLVPLVLYFNHR 128
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AKI + +A+GKKN+DKRE + KRDW RQK R+L++H
Sbjct: 129 GMAKIKIGIAKGKKNHDKREAQAKRDWSRQKQRLLKDH 166
>gi|304392078|ref|ZP_07374020.1| SsrA-binding protein [Ahrensia sp. R2A130]
gi|303296307|gb|EFL90665.1| SsrA-binding protein [Ahrensia sp. R2A130]
Length = 158
Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats.
Identities = 101/158 (63%), Positives = 128/158 (81%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K+V++NRKARYNY I +FEAG++L GTEVKSLR K NI++SYA FE+
Sbjct: 1 MAKKKAEGVG-KIVAENRKARYNYAIEDNFEAGLMLHGTEVKSLRTGKANIAESYANFED 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N YIPEYLQANRFNH PRR RKLL+SKREI RL A+ RDGMTLVP+K+YFN +
Sbjct: 60 GEMWLINGYIPEYLQANRFNHEPRRRRKLLMSKREISRLSQAIARDGMTLVPLKLYFNDR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AK+++ L +GKKN+DKR+TEKKRDW+R+K R+LR+
Sbjct: 120 GMAKLEIGLGKGKKNHDKRDTEKKRDWNREKGRLLRDR 157
>gi|85374376|ref|YP_458438.1| SsrA-binding protein [Erythrobacter litoralis HTCC2594]
gi|122544238|sp|Q2N9K0|SSRP_ERYLH RecName: Full=SsrA-binding protein
gi|84787459|gb|ABC63641.1| small protein B [Erythrobacter litoralis HTCC2594]
Length = 160
Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K +K V++NR+AR++Y + FEAGI L GTEVK+LR + +I++SYA
Sbjct: 1 MARPKPETFDKQKTVAENRRARFDYAVEDKFEAGIALQGTEVKALRAGEASIAESYAEVR 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E WL N+ IPEY NR NH PRR RKLLL REI RL AV R GMTLVP+ IYFN+
Sbjct: 61 DGEAWLINANIPEYSHGNRLNHQPRRPRKLLLHNREIERLLGAVERKGMTLVPLSIYFNS 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AK++LALA+G++ DKRE K RDW R K RI+R+
Sbjct: 121 RGRAKVELALAKGRQAQDKREYIKDRDWKRDKARIMRDK 159
>gi|159036575|ref|YP_001535828.1| SsrA-binding protein [Salinispora arenicola CNS-205]
gi|189046842|sp|A8M3R4|SSRP_SALAI RecName: Full=SsrA-binding protein
gi|157915410|gb|ABV96837.1| SsrA-binding protein [Salinispora arenicola CNS-205]
Length = 159
Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats.
Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KVV+ NRKAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A N E++L
Sbjct: 5 KGRKVVASNRKARHDYSILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERNGELYLHGM 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY+Q NH PRR RKLLL++ EI RL R G+TLVP+++YF+ G AK+++
Sbjct: 65 HIPEYVQGTWTNHEPRRTRKLLLNRTEIDRLIGKTRESGLTLVPLQVYFSD-GWAKVEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+A+GKK YDKR+ KRD R+ R +
Sbjct: 124 VAKGKKAYDKRQDLAKRDAQREMARAAGRRS 154
>gi|254487765|ref|ZP_05100970.1| SsrA-binding protein [Roseobacter sp. GAI101]
gi|214044634|gb|EEB85272.1| SsrA-binding protein [Roseobacter sp. GAI101]
Length = 184
Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 112/154 (72%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 30 SKSDPNYKVIAENRRARFDYAIDDDVECGIILEGSEVKSLRNGGANIAESYAAVEDGELW 89
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSY+ Y QA F H RR RKLL+SK+++ L+ +R GMTLVP+ +YFN +G+AK
Sbjct: 90 LVNSYVAPYSQAKTFTHEERRRRKLLVSKKQLSNLWNETQRKGMTLVPLVMYFNHRGMAK 149
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R+L++H
Sbjct: 150 IKIGIAKGKKLHDKRETAAKRDWSRQKQRLLKDH 183
>gi|209884965|ref|YP_002288822.1| SsrA-binding protein [Oligotropha carboxidovorans OM5]
gi|226706528|sp|B6JGA6|SSRP_OLICO RecName: Full=SsrA-binding protein
gi|209873161|gb|ACI92957.1| SsrA-binding protein [Oligotropha carboxidovorans OM5]
Length = 157
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 97/156 (62%), Positives = 123/156 (78%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P KVV++NRKAR+NY I +FEAG++LTGTEVKS R K IS+SYA +N E
Sbjct: 1 MTEKKARPIKVVAENRKARFNYSIEDTFEAGVMLTGTEVKSARNGKSTISESYADSKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH PRR RKLLL KR+I++L A+ R+GMTL+P+K+YFN +G
Sbjct: 61 IWLVNANIPEYLQANRFNHEPRRPRKLLLHKRQINKLIGAIEREGMTLIPLKMYFNEQGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW R+K R+LR
Sbjct: 121 LKLELALAKGKKLHDKRETEKKRDWSREKSRLLRAR 156
>gi|134300816|ref|YP_001114312.1| SsrA-binding protein [Desulfotomaculum reducens MI-1]
gi|187611495|sp|A4J8T4|SSRP_DESRM RecName: Full=SsrA-binding protein
gi|134053516|gb|ABO51487.1| SsrA-binding protein [Desulfotomaculum reducens MI-1]
Length = 161
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 108/158 (68%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ K ++DNR+AR+ YH++ ++EAGI L+GTEVKSLR K N+ D++A EN
Sbjct: 1 MAAKATSEKGFKTITDNRRARHEYHVIETYEAGIALSGTEVKSLRAGKANLQDAFARVEN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ L N +I Y Q NRFNH P+R R+LL+ K+EI RLY VR G+ L+P+K+YFN +
Sbjct: 61 GEMMLYNLHISPYEQGNRFNHEPKRTRRLLMHKQEILRLYGKVREKGLALIPLKVYFNPR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ LALAQGKK+YDKR RD R R +RE
Sbjct: 121 GKVKVQLALAQGKKSYDKRHDIAARDAKRDMDRAMRER 158
>gi|170739035|ref|YP_001767690.1| SsrA-binding protein [Methylobacterium sp. 4-46]
gi|238688048|sp|B0U7H1|SSRP_METS4 RecName: Full=SsrA-binding protein
gi|168193309|gb|ACA15256.1| SsrA-binding protein [Methylobacterium sp. 4-46]
Length = 157
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 117/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P ++VV+DNRKAR++Y I + EAGI LTGTEVKSLR K I ++YA DE
Sbjct: 1 MAPKADPARRVVADNRKARFHYEITDTVEAGIALTGTEVKSLRGGKATIGEAYAGPSGDE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N+YIPEYL+ANRFNH +R R+LLL +R+I++ A +R+G T++P+KIYFN +G
Sbjct: 61 FFLFNAYIPEYLEANRFNHETKRPRRLLLHRRQINKFLGATQREGYTVIPLKIYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++L L +GKK +DKRET K+RDW R K R++R+
Sbjct: 121 AKVELGLGRGKKLHDKRETAKERDWQRDKARLMRDK 156
>gi|307946578|ref|ZP_07661913.1| SsrA-binding protein [Roseibium sp. TrichSKD4]
gi|307770242|gb|EFO29468.1| SsrA-binding protein [Roseibium sp. TrichSKD4]
Length = 160
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 98/158 (62%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 1 MS-LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K++ P VVSDNRKAR+N+ I EAGI L GTEVKSLR K NI +SYA
Sbjct: 1 MAPKKNKNAPNISVVSDNRKARFNFEIEDVLEAGIELKGTEVKSLRTGKANIGESYAAEY 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EIW+ N YIPEY Q NRFNH PRR RKLLL KREI +L AV++DG T+VP+KIYFN
Sbjct: 61 QGEIWIYNVYIPEYTQGNRFNHEPRRPRKLLLHKREIGKLAGAVQKDGKTIVPLKIYFND 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KG AK++LALA+GKK +DKRETEKKRDW R+K R+++
Sbjct: 121 KGRAKLELALARGKKLHDKRETEKKRDWQREKSRLMKN 158
>gi|49474058|ref|YP_032100.1| SsrA-binding protein [Bartonella quintana str. Toulouse]
gi|61216508|sp|Q6G090|SSRP_BARQU RecName: Full=SsrA-binding protein
gi|49239562|emb|CAF25919.1| SSRA-binding protein [Bartonella quintana str. Toulouse]
Length = 158
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 95/155 (61%), Positives = 125/155 (80%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K R P +K+++DNRKAR+N+ I+ + E G+VL G EVKSLR + NI++SYA+FEN E+
Sbjct: 3 KKRNAPVRKIIADNRKARFNFEILDNLEVGLVLQGAEVKSLRSNHANIAESYASFENGEL 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL NSYIPEY QANRFNH PRR RKLL+SKRE+ R + A R+GMTLVP+K+YFN +G A
Sbjct: 63 WLVNSYIPEYTQANRFNHEPRRLRKLLISKREMARFFNATSREGMTLVPLKLYFNERGRA 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRETEKKRDW +K R+L+ +
Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWRCEKARLLKRY 157
>gi|145593540|ref|YP_001157837.1| SsrA-binding protein [Salinispora tropica CNB-440]
gi|189046843|sp|A4X3K9|SSRP_SALTO RecName: Full=SsrA-binding protein
gi|145302877|gb|ABP53459.1| SsrA-binding protein [Salinispora tropica CNB-440]
Length = 159
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 103/146 (70%), Gaps = 1/146 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KVV+ NRKAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A N E++L
Sbjct: 5 KGRKVVASNRKARHDYSILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERNGELYLHGM 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY+Q NH PRR RKLLL++ EI RL R G+T+VP+++YF+ G AK+++
Sbjct: 65 HIPEYVQGTWTNHEPRRTRKLLLNRIEIDRLIGKTRESGLTIVPLQVYFSD-GWAKVEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRI 154
+A+GKK+YDKR+ KRD R+ R
Sbjct: 124 VAKGKKSYDKRQDLAKRDAQREIARA 149
>gi|218290977|ref|ZP_03495025.1| SsrA-binding protein [Alicyclobacillus acidocaldarius LAA1]
gi|258510747|ref|YP_003184181.1| SsrA-binding protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|218239059|gb|EED06263.1| SsrA-binding protein [Alicyclobacillus acidocaldarius LAA1]
gi|257477473|gb|ACV57792.1| SsrA-binding protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 157
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 76/152 (50%), Positives = 107/152 (70%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ ++++ NRKA ++Y I ++EAG+VLTGTE+KS+R V++ D+YA ++ E+++
Sbjct: 3 RSQGIRLIAQNRKAYHDYFIEETYEAGLVLTGTEIKSIRKGSVSLRDAYARVDDGEVYIY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y Q NRFNH P R RK LL K+EI+ LY AVR+ G+TLVP KIY G AK++
Sbjct: 63 NMHIAPYEQGNRFNHDPLRPRKCLLHKKEINHLYGAVRQRGVTLVPTKIYIKD-GWAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA+GKK YDKRE K+RD +R+ R LR
Sbjct: 122 LALAKGKKLYDKREAAKERDANREIQRALRAR 153
>gi|120402913|ref|YP_952742.1| SsrA-binding protein [Mycobacterium vanbaalenii PYR-1]
gi|189046834|sp|A1T6D6|SSRP_MYCVP RecName: Full=SsrA-binding protein
gi|119955731|gb|ABM12736.1| SsrA-binding protein [Mycobacterium vanbaalenii PYR-1]
Length = 165
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%)
Query: 1 MSLKSR--GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + + +VV+ NRKAR+NY I+ ++EAGI L GTEVKSLR + +++D++AT
Sbjct: 1 MAKKPKAVKDSNNQVVATNRKARHNYSILDTYEAGIALMGTEVKSLREGQASLADAFATV 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
++ EIWL N +IPEY NH PRRNRKLL+ +REI L +R +TLVP+ +YF
Sbjct: 61 DDGEIWLRNLHIPEYHHGTWTNHAPRRNRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFT 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GK+ +DKR+ +RD R+ R L
Sbjct: 121 G-GKVKVELALARGKQAHDKRQDMARRDAQREVTRELGRR 159
>gi|255264131|ref|ZP_05343473.1| SsrA-binding protein [Thalassiobium sp. R2A62]
gi|255106466|gb|EET49140.1| SsrA-binding protein [Thalassiobium sp. R2A62]
Length = 158
Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P KV+++NR+AR++Y I E GIVL G+EVKSLR + NI+DSYA E+
Sbjct: 1 MAKKPNTDPNYKVIAENRRARFDYAIEDDIECGIVLMGSEVKSLRTGQSNIADSYAAVED 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++LTN+YI Y F H RR RKLL+SKRE+ RL+ A +R+GMTLVP+ +YFN K
Sbjct: 61 GELFLTNAYIAPYT-RAMFGHEERRKRKLLVSKREVARLWNATQREGMTLVPLVMYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
GL K+ + A+GKKN+DKRET KRDW RQK R+L+
Sbjct: 120 GLVKVKIGTAKGKKNHDKRETSAKRDWGRQKQRLLKH 156
>gi|126740824|ref|ZP_01756509.1| SsrA-binding protein [Roseobacter sp. SK209-2-6]
gi|126718120|gb|EBA14837.1| SsrA-binding protein [Roseobacter sp. SK209-2-6]
Length = 158
Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats.
Identities = 83/159 (52%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P KV+++NR+AR++Y I E G+VL G+EVK+LR NI++SYA E+
Sbjct: 1 MA-KQKSDPNYKVIAENRRARFDYAIEDDVECGVVLEGSEVKALRNGGGNIAESYAAVED 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSY+P Y QA F H RR RKLL S+REI ++ A +R GMTLVP+ +YFN K
Sbjct: 60 GELWLVNSYVPPYEQAKMFKHIERRRRKLLASRREIANMWNATQRKGMTLVPIVMYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ + +A+GKKN+DKR TE KRDW RQK R+L++H+
Sbjct: 120 GRIKLKIGIAKGKKNHDKRATEAKRDWSRQKQRLLKDHS 158
>gi|304321936|ref|YP_003855579.1| SsrA-binding protein [Parvularcula bermudensis HTCC2503]
gi|303300838|gb|ADM10437.1| SsrA-binding protein [Parvularcula bermudensis HTCC2503]
Length = 163
Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats.
Identities = 85/162 (52%), Positives = 119/162 (73%), Gaps = 4/162 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE- 59
M+ + + +P K +++NR+AR++YH+ S EAGIVLTGTEVK+LR K NI++SY + E
Sbjct: 1 MAPRGKSDPHNKTIAENRRARFDYHVHESVEAGIVLTGTEVKALREGKANIAESYCSPEA 60
Query: 60 ---NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
EIWL N+ I +Y NR NH +R RKLLLS+REI L AV R G T++P+++Y
Sbjct: 61 GPNGTEIWLINATILDYSAGNRENHDQKRPRKLLLSRREIGTLTGAVERKGFTIMPLRLY 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
FN +G+AK+ +ALA+GKK +DKR+T+K RDW RQK R+LRE+
Sbjct: 121 FNNRGIAKLAIALAEGKKLHDKRDTQKARDWSRQKQRLLREN 162
>gi|62181258|ref|YP_217675.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161615620|ref|YP_001589585.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Paratyphi B str. SPB7]
gi|195873630|ref|ZP_02698054.2| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197301208|ref|ZP_02664518.2| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|198245783|ref|YP_002216696.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|204929524|ref|ZP_03220598.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|62128891|gb|AAX66594.1| small protein B; putative tmRNA-binding protein [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161364984|gb|ABX68752.1| hypothetical protein SPAB_03403 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|195633702|gb|EDX52116.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Newport str. SL317]
gi|197287862|gb|EDY27250.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. SL480]
gi|197940299|gb|ACH77632.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|204321243|gb|EDZ06443.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Javiana str. GA_MM04042433]
gi|312913710|dbj|BAJ37684.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. T000240]
gi|320087165|emb|CBY96932.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322614465|gb|EFY11396.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315996572]
gi|322621470|gb|EFY18323.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-1]
gi|322624331|gb|EFY21164.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-3]
gi|322629370|gb|EFY26148.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 495297-4]
gi|322633610|gb|EFY30352.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-1]
gi|322638347|gb|EFY35045.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 515920-2]
gi|322639785|gb|EFY36468.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 531954]
gi|322647354|gb|EFY43850.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. NC_MB110209-0054]
gi|322656030|gb|EFY52330.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. CASC_09SCPH15965]
gi|322661424|gb|EFY57649.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 19N]
gi|322662624|gb|EFY58832.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 81038-01]
gi|322666997|gb|EFY63172.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MD_MDA09249507]
gi|322671366|gb|EFY67489.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 414877]
gi|322677627|gb|EFY73690.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 366867]
gi|322681547|gb|EFY77577.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 413180]
gi|322683947|gb|EFY79957.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 446600]
gi|322715744|gb|EFZ07315.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Choleraesuis str. A50]
gi|323131031|gb|ADX18461.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 4/74]
gi|323195516|gb|EFZ80694.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609458-1]
gi|323197889|gb|EFZ83012.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556150-1]
gi|323203067|gb|EFZ88099.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 609460]
gi|323205308|gb|EFZ90283.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 507440-20]
gi|323210542|gb|EFZ95426.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 556152]
gi|323218177|gb|EGA02889.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB101509-0077]
gi|323223777|gb|EGA08082.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB110209-0055]
gi|323230940|gb|EGA15058.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB111609-0052]
gi|323234708|gb|EGA18794.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009083312]
gi|323238747|gb|EGA22797.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 2009085258]
gi|323241447|gb|EGA25478.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. 315731156]
gi|323246856|gb|EGA30823.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2009159199]
gi|323253255|gb|EGA37085.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008282]
gi|323257051|gb|EGA40760.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008283]
gi|323260476|gb|EGA44087.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008284]
gi|323264467|gb|EGA47973.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008285]
gi|323269602|gb|EGA53055.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. IA_2010008287]
gi|326628830|gb|EGE35173.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9]
Length = 175
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 134
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 135 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 172
>gi|51891478|ref|YP_074169.1| SsrA-binding protein [Symbiobacterium thermophilum IAM 14863]
gi|61216483|sp|Q67SL8|SSRP_SYMTH RecName: Full=SsrA-binding protein
gi|51855167|dbj|BAD39325.1| tmRNA-binding protein [Symbiobacterium thermophilum IAM 14863]
Length = 158
Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 107/154 (69%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+R + V++NRKAR++Y + ++EAGIVL G+EVKS R +VN+ D+YA ++ EI+
Sbjct: 2 ARAKAEIQPVAENRKARHDYFVEETYEAGIVLVGSEVKSCRAGRVNLRDAYAQIKDGEIF 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I + QANRFNH P R RKLL+ K EIHRLY VR G TLVP+++YFN KG K
Sbjct: 62 LLNCHISPFEQANRFNHEPLRPRKLLMHKSEIHRLYGKVREKGFTLVPLRLYFNQKGKVK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++LALA+GK+ YDKR+ R+ R+ R LR
Sbjct: 122 VELALAKGKRAYDKRDDIAAREAKREMARALRGR 155
>gi|282897989|ref|ZP_06305984.1| SmpB protein [Raphidiopsis brookii D9]
gi|282900663|ref|ZP_06308605.1| SmpB protein [Cylindrospermopsis raciborskii CS-505]
gi|281194463|gb|EFA69418.1| SmpB protein [Cylindrospermopsis raciborskii CS-505]
gi|281197133|gb|EFA72034.1| SmpB protein [Raphidiopsis brookii D9]
Length = 155
Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 2/153 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
N K++SDNR+ARY Y I+ ++EAGI LTGTEVKS+R KVN+ D YA + E WL
Sbjct: 4 KNEGYKIISDNRQARYLYEILETYEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEAWLI 63
Query: 67 NSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N++I Y FNH PRR RKLLL EI +L V + G+TL+P+K+YF +G KI
Sbjct: 64 NAHISPYTASGQYFNHEPRRTRKLLLHGLEIRKLIGKVEQQGLTLIPLKMYFK-RGWVKI 122
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +GKK +DKRE K+R R R ++ +
Sbjct: 123 SIGLCRGKKVHDKREDLKRRQDQRDIQRAMKNY 155
>gi|317123037|ref|YP_004103040.1| SsrA-binding protein [Thermaerobacter marianensis DSM 12885]
gi|315593017|gb|ADU52313.1| SsrA-binding protein [Thermaerobacter marianensis DSM 12885]
Length = 155
Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats.
Identities = 76/149 (51%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
++V+DNRKAR++Y + +FEAG+VLTGTE+KS+R +VN+ DS+A E E+WL +
Sbjct: 7 GVRLVADNRKARHDYFVDETFEAGLVLTGTEIKSIRAGRVNLRDSHARVERGEVWLYGMH 66
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NRFNH P R RKLLL +REI L VR G TLVP+K+Y G AK++LAL
Sbjct: 67 IAPYEHGNRFNHEPDRPRKLLLHRREIDYLAGRVRERGYTLVPLKLYLKG-GWAKVELAL 125
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK+YDKR T +R+ R+ + LR
Sbjct: 126 ARGKKSYDKRATIAQREAQRRMAQALRAR 154
>gi|77464463|ref|YP_353967.1| SsrA-binding protein [Rhodobacter sphaeroides 2.4.1]
gi|126463303|ref|YP_001044417.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17029]
gi|221640354|ref|YP_002526616.1| SsrA-binding protein [Rhodobacter sphaeroides KD131]
gi|123591060|sp|Q3IZG8|SSRP_RHOS4 RecName: Full=SsrA-binding protein
gi|187629780|sp|A3PMS9|SSRP_RHOS1 RecName: Full=SsrA-binding protein
gi|254778376|sp|B9KMM4|SSRP_RHOSK RecName: Full=SsrA-binding protein
gi|77388881|gb|ABA80066.1| SsrA-binding protein [Rhodobacter sphaeroides 2.4.1]
gi|126104967|gb|ABN77645.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17029]
gi|221161135|gb|ACM02115.1| SsrA-binding protein [Rhodobacter sphaeroides KD131]
Length = 157
Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 113/157 (71%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +P K++++NR+AR++Y I EAGI+L G+EVKSLR NI +SYA+ E E
Sbjct: 1 MAKHSDPNSKLIAENRRARFDYFIEEEIEAGIMLLGSEVKSLRQGGSNIGESYASVEEGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N YI YLQA + H RR RKLL+S+RE+ RL+ A R+GMT+VP+++YFN +G+
Sbjct: 61 LWLINGYIAPYLQAKTWGHEERRKRKLLVSRRELARLWTATAREGMTIVPIRMYFNDRGI 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK DKRET KRDW R+K R+L++++
Sbjct: 121 VKLKIGIAKGKKLSDKRETSAKRDWSREKQRLLKQNS 157
>gi|283477505|emb|CAY73421.1| SsrA-binding protein (Small protein B) [Erwinia pyrifoliae DSM
12163]
Length = 173
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 14 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 73
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + P + ++ P R+RKLLL +RE+ L+ RDG T+V + +Y+
Sbjct: 74 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLFGKANRDGYTIVALSMYWK- 132
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR+ K R+W K RI++ N
Sbjct: 133 NAWAKLKIGVAKGKKEHDKRDDIKDREWKLDKARIMKHAN 172
>gi|161502216|ref|YP_001569328.1| SsrA-binding protein [Salmonella enterica subsp. arizonae serovar
62:z4,z23:-- str. RSK2980]
gi|160863563|gb|ABX20186.1| hypothetical protein SARI_00240 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 175
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 134
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 135 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKH 172
>gi|83953259|ref|ZP_00961981.1| SsrA-binding protein [Sulfitobacter sp. NAS-14.1]
gi|83842227|gb|EAP81395.1| SsrA-binding protein [Sulfitobacter sp. NAS-14.1]
Length = 162
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 82/154 (53%), Positives = 112/154 (72%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 8 SKSDPNYKVIAENRRARFDYAIDDDVECGIILEGSEVKSLRNGGANIAESYAAVEDGELW 67
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSY+ Y QA F H RR RKLL+SK+E+ L+ +R GMTLVPM +YFN +G+AK
Sbjct: 68 LVNSYVAPYTQAKTFTHEERRRRKLLVSKKELSNLWNETQRKGMTLVPMVMYFNHRGMAK 127
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R+L++H
Sbjct: 128 IKIGIAKGKKLHDKRETAAKRDWSRQKQRLLKDH 161
>gi|292489114|ref|YP_003532001.1| ssrA-binding protein (small protein B) [Erwinia amylovora CFBP1430]
gi|291554548|emb|CBA22142.1| SsrA-binding protein (Small protein B) [Erwinia amylovora CFBP1430]
gi|312173271|emb|CBX81526.1| SsrA-binding protein (Small protein B) [Erwinia amylovora ATCC
BAA-2158]
Length = 173
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 14 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 73
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + P + ++ P R+RKLLL +RE+ L RDG T+V + +Y+
Sbjct: 74 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLIGKANRDGYTIVALSMYWK- 132
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + LA+GKK +DKR+ K R+W K RI++ N
Sbjct: 133 NAWAKLKIGLAKGKKEHDKRDDIKDREWKLDKARIMKHAN 172
>gi|197105352|ref|YP_002130729.1| small protein B (tmRNA-binding protein) [Phenylobacterium zucineum
HLK1]
gi|196478772|gb|ACG78300.1| small protein B (tmRNA-binding protein) [Phenylobacterium zucineum
HLK1]
Length = 152
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 82/148 (55%), Positives = 114/148 (77%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K +++NR+AR++Y + ++FEAGI LTG+EVKSLR + NI++SYA E DEI L N+ IP
Sbjct: 4 KTIAENRRARFDYFLEQTFEAGIALTGSEVKSLRNGRANIAESYAAVEGDEIVLINADIP 63
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y QA FNH PRR RKLLL ++EI RL AV+R+G T+VP ++Y++ KGLAK++++LA
Sbjct: 64 PYAQAGPFFNHEPRRPRKLLLKRKEIDRLIGAVQREGRTIVPTRLYWSDKGLAKLEISLA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRET +RDW R K R+LR+
Sbjct: 124 KGKKTHDKRETAAERDWQRDKARLLRDK 151
>gi|330465937|ref|YP_004403680.1| ssra-binding protein [Verrucosispora maris AB-18-032]
gi|328808908|gb|AEB43080.1| ssra-binding protein [Verrucosispora maris AB-18-032]
Length = 159
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KVV+ N+KAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A + E++L
Sbjct: 5 KGRKVVASNKKARHDYAILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERDGELYLHGM 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY Q NH PRR RKLLL + EI RL R G+TLVP+++YF+ G AK+++
Sbjct: 65 HIPEYTQGTWTNHEPRRTRKLLLKRLEIDRLIGKTRESGLTLVPLQVYFSD-GWAKVEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR+ KRD DR+ R +
Sbjct: 124 LAKGKKAYDKRQDLAKRDADREIQRAVGRR 153
>gi|27380181|ref|NP_771710.1| SsrA-binding protein [Bradyrhizobium japonicum USDA 110]
gi|30173390|sp|Q9RH74|SSRP_BRAJA RecName: Full=SsrA-binding protein
gi|27353335|dbj|BAC50335.1| tmRNA-binding protein [Bradyrhizobium japonicum USDA 110]
Length = 157
Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 121/156 (77%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P KV+++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E
Sbjct: 1 MADKNERPIKVMAENRKARFNYAIEDTIEAGIALTGTEVKSIRNGKSTIAESYADSKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQ NRFNH P+R RKLLL +R+I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINATIPEYLQGNRFNHEPKRPRKLLLHRRQINKLIGAVDREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LA+A+GKK +DKRETEKKRDW R+K R+LR
Sbjct: 121 AKLQLAVAKGKKLHDKRETEKKRDWSREKGRLLRAR 156
>gi|299135111|ref|ZP_07028302.1| SsrA-binding protein [Afipia sp. 1NLS2]
gi|298590088|gb|EFI50292.1| SsrA-binding protein [Afipia sp. 1NLS2]
Length = 157
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 94/156 (60%), Positives = 121/156 (77%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P KVV++NRKAR+NY I + EAG++LTGTEVKS R K I++SYA + E
Sbjct: 1 MAEKKERPIKVVAENRKARFNYSIEDTIEAGVMLTGTEVKSARNGKSTIAESYADSKGGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH PRR RKLLL KR+I++L A+ R+GMTL+P+K+YFN +G
Sbjct: 61 IWLVNANIPEYLQANRFNHEPRRPRKLLLHKRQINKLIGAIEREGMTLIPLKMYFNEQGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKRETEKKRDW R+K R+LR
Sbjct: 121 LKLELALAKGKKLHDKRETEKKRDWSREKSRLLRAR 156
>gi|296444873|ref|ZP_06886835.1| SsrA-binding protein [Methylosinus trichosporium OB3b]
gi|296257541|gb|EFH04606.1| SsrA-binding protein [Methylosinus trichosporium OB3b]
Length = 158
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 90/157 (57%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FEND 61
+ + P KVVSDNR+AR++Y I SFEAG+ LTGTEVKSLR K I++SYA +
Sbjct: 1 MAEKQTPNFKVVSDNRRARFDYEIGESFEAGLALTGTEVKSLRTGKATIAESYAHVDRHG 60
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL N+ IPEYL NRFNH P+R RKLLL +RE+ +L V R+GMT+VP+K+YFN +G
Sbjct: 61 EAWLVNATIPEYLSGNRFNHEPKRLRKLLLKQRELAKLAQGVEREGMTIVPLKLYFNERG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ +AL +GKK +DKRE EKKRDW R+K R+LR+
Sbjct: 121 RAKLQIALGRGKKLHDKREVEKKRDWGREKSRLLRDR 157
>gi|310815003|ref|YP_003962967.1| SsrA-binding protein [Ketogulonicigenium vulgare Y25]
gi|308753738|gb|ADO41667.1| SsrA-binding protein [Ketogulonicigenium vulgare Y25]
Length = 157
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 81/156 (51%), Positives = 114/156 (73%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ N +V+++NR+AR++Y I E GIVLTG+EVKSLR K NI++SYA+ EN E
Sbjct: 1 MAKDKNTNYQVLAENRRARFDYQIEEDLECGIVLTGSEVKSLRTGKANIAESYASVENGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N YI Y A + H RR+RKLL+ ++E+ RL+ A +R+GMT+VP+ +YFN G
Sbjct: 61 LWLINGYIAPYEPARTWGHEERRHRKLLVKRKELARLWNATQREGMTIVPLVLYFNDVGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KI +A+A+GKK +DKRE+E KRDWDRQK R+L++H
Sbjct: 121 IKIKIAIAKGKKLHDKRESEAKRDWDRQKQRLLKDH 156
>gi|110633296|ref|YP_673504.1| SsrA-binding protein [Mesorhizobium sp. BNC1]
gi|122966134|sp|Q11JT6|SSRP_MESSB RecName: Full=SsrA-binding protein
gi|110284280|gb|ABG62339.1| SsrA-binding protein [Chelativorans sp. BNC1]
Length = 155
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 91/158 (57%), Positives = 119/158 (75%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ N V+DNRKAR++Y ++ + EAG+VL+GTEVKSLR NI +SYA E
Sbjct: 1 MAK----NTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL NS+IPEY NRFNH PRR RKLLLSK+E+ RL AV R+GMT+VP+K+YFN +
Sbjct: 57 GEIWLINSHIPEYFAGNRFNHEPRRRRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNER 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AK+ LA+A+GKK +DKRET K+RDW R++ R+L+E
Sbjct: 117 GIAKLLLAIARGKKLHDKRETLKQRDWSREQARLLKER 154
>gi|302035401|ref|YP_003795723.1| ssrA-binding protein [Candidatus Nitrospira defluvii]
gi|300603465|emb|CBK39795.1| SsrA-binding protein [Candidatus Nitrospira defluvii]
Length = 159
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 107/158 (67%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KVV+ NRKA ++Y I FEAG++L GTEVKSLR +VN+ DSYA+ ++
Sbjct: 1 MTKTHDTEDQYKVVATNRKAYHDYFIEEKFEAGVILRGTEVKSLREGRVNLQDSYASVDD 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L + +I Y N NH P R RKLLL ++EI++L + G+TLVP++IYF+ +
Sbjct: 61 GEVYLQHCHISPYSHGNLMNHDPLRKRKLLLHRKEINKLIGKTQLKGLTLVPLRIYFSKR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK YD+RE+ K R+ R+ R +++
Sbjct: 121 GHAKVELALAKGKKQYDRRESIKAREAGREVERAIKQR 158
>gi|296394148|ref|YP_003659032.1| SsrA-binding protein [Segniliparus rotundus DSM 44985]
gi|296181295|gb|ADG98201.1| SsrA-binding protein [Segniliparus rotundus DSM 44985]
Length = 162
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + +P + +++ NRKAR++Y I+ +EAG+VL GTEVKSLR N+SD+YAT +
Sbjct: 1 MKSVKKNDPNEALIARNRKARHDYSILDVYEAGVVLQGTEVKSLREGHANLSDAYATVDG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE+WL +IPEY + NH P R RKLLL +REI L R TLVP+ +YF A
Sbjct: 61 DEVWLRGVHIPEYRNGSWTNHTPTRTRKLLLHRREIENLVGKTREGNTTLVPLSMYFKA- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G K+++ALA+GK+ +DKR+ KRD DR+ R +
Sbjct: 120 GKVKVEIALARGKQLHDKRQDLAKRDADREVVRAI 154
>gi|316934153|ref|YP_004109135.1| SsrA-binding protein [Rhodopseudomonas palustris DX-1]
gi|315601867|gb|ADU44402.1| SsrA-binding protein [Rhodopseudomonas palustris DX-1]
Length = 157
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 120/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E
Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIDDTIEAGIALTGTEVKSIRNGKTTIAESYADARGSE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLIGAVEREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LALA+GKK +DKRETEKKRDW+R+K R+LR
Sbjct: 121 AKLQLALAKGKKLHDKRETEKKRDWNREKGRLLRAR 156
>gi|188582629|ref|YP_001926074.1| SsrA-binding protein [Methylobacterium populi BJ001]
gi|238692897|sp|B1ZJQ3|SSRP_METPB RecName: Full=SsrA-binding protein
gi|179346127|gb|ACB81539.1| SsrA-binding protein [Methylobacterium populi BJ001]
Length = 157
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 82/156 (52%), Positives = 116/156 (74%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P ++VV+DNR AR++Y I +FEAGI LTGTEVKSLR K I +SYA ++
Sbjct: 1 MAPKTEPGRRVVADNRSARFHYAIEDTFEAGIALTGTEVKSLRGGKATIGESYAGPSGND 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+ L N+YIPEYL+ANRFNH +R R+LLL +R+I++L A +R G T++P+KIYFN KG
Sbjct: 61 LMLFNAYIPEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVIPLKIYFNDKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++L L +GK+ +DKRE+ K+RDW R K R++R+
Sbjct: 121 AKVELGLGKGKQLHDKRESVKQRDWQRDKARLMRDK 156
>gi|296282669|ref|ZP_06860667.1| SsrA-binding protein [Citromicrobium bathyomarinum JL354]
Length = 160
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/159 (52%), Positives = 109/159 (68%), Gaps = 1/159 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K +K V++NR+AR++Y + FEAGI L GTEVKSLR + I++SYA
Sbjct: 1 MARPKPPTFDKRKTVAENRRARFDYAVEEKFEAGIALQGTEVKSLRSGEATIAESYAEVR 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E WL N+ IPEY NR NH P+R RKLLL +REI +L AV R GMTLVP+ +YFN
Sbjct: 61 DGEAWLINANIPEYTHGNRLNHEPKRPRKLLLHEREIEKLLGAVERKGMTLVPLSMYFNG 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AK++LALA+G++ DKR+ K RDW R K RILR+
Sbjct: 121 QGRAKVELALAKGRQTKDKRDYIKDRDWQRDKARILRDR 159
>gi|83951182|ref|ZP_00959915.1| SsrA-binding protein [Roseovarius nubinhibens ISM]
gi|83839081|gb|EAP78377.1| SsrA-binding protein [Roseovarius nubinhibens ISM]
Length = 168
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 86/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + NP KV+++NR+ARY+Y I E GI+L G+EVKSLR + NI++SYA ++
Sbjct: 11 MA-KPKDNPNYKVIAENRRARYDYAIEEDVECGIILEGSEVKSLRENSANIAESYAAVDD 69
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H +R RKLL+SKRE+ RL+ +R GMTLVP+ +YFN +
Sbjct: 70 GELWLINSYIAPYEQAKTFGHEEKRRRKLLVSKRELARLWNDTQRKGMTLVPLVLYFNHR 129
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
GLAK+ + +A+GKKN DKR TE KRDW+RQK R+L++H+
Sbjct: 130 GLAKLKIGIAKGKKNVDKRATEAKRDWNRQKQRLLKDHS 168
>gi|319898684|ref|YP_004158777.1| SsrA-binding protein [Bartonella clarridgeiae 73]
gi|319402648|emb|CBI76194.1| SsrA-binding protein [Bartonella clarridgeiae 73]
Length = 158
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 95/155 (61%), Positives = 123/155 (79%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + +KV++DNRKAR+N+ I+ + E GI+L GTEVKSLR + NIS+SYA FE E+
Sbjct: 3 KKKTASIRKVIADNRKARFNFEILDTLEVGIILQGTEVKSLRSNHANISESYANFEKGEL 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL N+YIPEY QANRFNH RR RKLLLSKRE+ R + AV R+GMT+ P+K+YFN +G
Sbjct: 63 WLINAYIPEYTQANRFNHEARRLRKLLLSKREMARFFNAVSREGMTITPLKLYFNERGRV 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRETEKKRDW R+K R+LR+H
Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWGREKARLLRKH 157
>gi|254523522|ref|ZP_05135577.1| small protein B [Stenotrophomonas sp. SKA14]
gi|219721113|gb|EED39638.1| small protein B [Stenotrophomonas sp. SKA14]
Length = 279
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K++ K ++ N++AR+ YHI FEAG+ L G EVKS+R + NI D+Y
Sbjct: 113 MSKNSGKDKAKSATANKTIALNKRARHEYHIEDRFEAGLALQGWEVKSIRAGRGNIVDAY 172
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A ++ EI+L + I +Q + RR RKLLL + EI +L V RDG T+VP
Sbjct: 173 AYVKDGEIFLIGAQITPLIQASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTA 232
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y++ K K+++ALA+GK+ +DKR+ K RDW +K R++R N
Sbjct: 233 MYWS-KNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVMRRGN 276
>gi|119383384|ref|YP_914440.1| SsrA-binding protein [Paracoccus denitrificans PD1222]
gi|187629764|sp|A1AZQ0|SSRP_PARDP RecName: Full=SsrA-binding protein
gi|119373151|gb|ABL68744.1| SsrA-binding protein [Paracoccus denitrificans PD1222]
Length = 156
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 80/155 (51%), Positives = 116/155 (74%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ +P K++++NR+AR++Y I E GIVLTG+EVKSLR + NI++SYA+ EN E
Sbjct: 1 MATKSDPNYKIIAENRRARFDYFIESDLEVGIVLTGSEVKSLRTGQSNIAESYASVENGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N+YI Y QA F H RR RKLL+S++E+ RL+ A+ R+GMTLVP+ +YFN +G
Sbjct: 61 LWLINAYIAAYKQAGVFGHEERRRRKLLVSRKELARLWQAIGREGMTLVPLVMYFNDRGK 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK DKRET KRDW+RQK R+L++
Sbjct: 121 VKLKIGVAKGKKVADKRETAAKRDWNRQKQRLLKQ 155
>gi|294637633|ref|ZP_06715912.1| SsrA-binding protein [Edwardsiella tarda ATCC 23685]
gi|291089188|gb|EFE21749.1| SsrA-binding protein [Edwardsiella tarda ATCC 23685]
Length = 160
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +N
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+
Sbjct: 61 GEAFLFGATFSPLNVASSHVVCDPTRTRKLLLKERELASLFGSANRDGYTIVPLSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR+ K R+W + K RI++ N
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKDREWKQDKARIMKHAN 159
>gi|319408274|emb|CBI81927.1| SsrA-binding protein [Bartonella schoenbuchensis R1]
Length = 158
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 92/154 (59%), Positives = 125/154 (81%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ + +++ NRKAR+N+ I+ + EAG+VL GTEVKSLR + NIS+SYA+FEN E+W
Sbjct: 4 KKNALARTIIAHNRKARFNFEILDNLEAGLVLHGTEVKSLRSNNANISESYASFENGELW 63
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N+YIPEY QANRFNH PRR RKLLLSKRE+ R + AV R+GMT+VP+++YFN KG K
Sbjct: 64 LINAYIPEYTQANRFNHEPRRLRKLLLSKREMARFFNAVSREGMTIVPLQLYFNEKGCVK 123
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++A+A+GKK +DKRETEKKRDW R+K R+L+++
Sbjct: 124 LEIAIARGKKLHDKRETEKKRDWGREKARLLKKY 157
>gi|117928935|ref|YP_873486.1| SsrA-binding protein [Acidothermus cellulolyticus 11B]
gi|166222352|sp|A0LVP0|SSRP_ACIC1 RecName: Full=SsrA-binding protein
gi|117649398|gb|ABK53500.1| SsrA-binding protein [Acidothermus cellulolyticus 11B]
Length = 159
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K+++ N+KAR++YHI ++EAGIVLTGTEVKSLR + ++ D +A ++ E+WL N
Sbjct: 5 SGRKLIASNKKARHDYHIEDTYEAGIVLTGTEVKSLRAGRASLVDGFALIKDGEVWLQNV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY + + NH PRR RKLLL KREI RL R G+TLVP+ +YF G AK++LA
Sbjct: 65 HIPEYAEGSWTNHEPRRPRKLLLHKREILRLLGKTRETGLTLVPLSLYFRD-GKAKVELA 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK+ YDKR+ +R R+ R L
Sbjct: 124 LARGKRAYDKRQALAERHAQREIARALGRR 153
>gi|317507099|ref|ZP_07964860.1| SsrA-binding protein [Segniliparus rugosus ATCC BAA-974]
gi|316254593|gb|EFV13902.1| SsrA-binding protein [Segniliparus rugosus ATCC BAA-974]
Length = 159
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ +P + +++ NRKAR++Y I+ +EAG+VL GTEVKSLR N+ D+YAT + DE+W
Sbjct: 2 KKNDPNEALIARNRKARHDYSILDVYEAGVVLQGTEVKSLREGHANLLDAYATVDGDEVW 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L +IPEY + NH P R RKLLL +REI L R TLVP+ +YF A G K
Sbjct: 62 LRGVHIPEYRNGSWTNHTPTRTRKLLLHRREIEDLVGKTREGNTTLVPLSMYFKA-GRVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ALA+GK+ +DKR+ KRD DR+ R +
Sbjct: 121 VEIALARGKQLHDKRQDLAKRDADREVIRAMGRR 154
>gi|163732583|ref|ZP_02140028.1| SsrA-binding protein [Roseobacter litoralis Och 149]
gi|161393943|gb|EDQ18267.1| SsrA-binding protein [Roseobacter litoralis Och 149]
Length = 162
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 112/154 (72%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 8 SKSDPNYKVVAENRRARFDYAIESDVECGIILEGSEVKSLREGGANIAESYAAVEDGELW 67
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSY+ Y QA F H RR RKLL+S++++ + A +R GMTLVP+ +YFN +G+AK
Sbjct: 68 LVNSYVAPYKQAKTFQHEERRRRKLLISRKQMADFWNATQRKGMTLVPLVLYFNHRGMAK 127
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R++++H
Sbjct: 128 IKIGVAKGKKLHDKRETAAKRDWSRQKSRLMKDH 161
>gi|302524560|ref|ZP_07276902.1| SsrA-binding protein [Streptomyces sp. AA4]
gi|302433455|gb|EFL05271.1| SsrA-binding protein [Streptomyces sp. AA4]
Length = 160
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KV++ NRKAR++Y I+ ++EAG+VL GTEVKSLR K ++ D++AT ++ E+WL
Sbjct: 3 KERGQKVIASNRKARHDYSILDTYEAGMVLQGTEVKSLRAGKASLVDAFATVDDGEVWLR 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY Q NH PRR RKLLL +REI RL + G++LVP+ +YF G K++
Sbjct: 63 NVHIPEYTQGTWTNHMPRRTRKLLLHRREIERLIGKTKESGLSLVPLSMYFKD-GKVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ALA+GKK YDKR+T KRD + R +
Sbjct: 122 IALAKGKKAYDKRQTLAKRDAQKDISRAM 150
>gi|113475974|ref|YP_722035.1| SsrA-binding protein [Trichodesmium erythraeum IMS101]
gi|123160802|sp|Q112L2|SSRP_TRIEI RecName: Full=SsrA-binding protein
gi|110167022|gb|ABG51562.1| SsrA-binding protein [Trichodesmium erythraeum IMS101]
Length = 156
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +K++SDNR+AR+NYHI+ ++EAG+ L GTEVKS+R KVN+ D YA N+E
Sbjct: 1 MAKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNE 60
Query: 63 IWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
WL N +I Y +A FNH PRR+R+LLL K+EI +L V + G+TLVP+++YF +G
Sbjct: 61 AWLLNVHISPYQKAGDFFNHEPRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFK-RG 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+D+ALAQGKK YDKRET K+RD R R ++++
Sbjct: 120 WVKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY 156
>gi|187631667|sp|Q16BP2|SSRP_ROSDO RecName: Full=SsrA-binding protein
Length = 162
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 112/154 (72%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W
Sbjct: 8 SKSDPNYKVVAENRRARFDYAIESDVECGIILEGSEVKSLREGGANIAESYAAVEDGELW 67
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L NSYI Y QA F H RR RKLL+S++++ + A +R GMTLVP+ +YFN +G+AK
Sbjct: 68 LVNSYIAPYKQAKTFQHEERRRRKLLISRKQLSDFWNATQRKGMTLVPLVLYFNHRGMAK 127
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
I + +A+GKK +DKRET KRDW RQK R++++H
Sbjct: 128 IKIGVAKGKKLHDKRETAAKRDWSRQKSRLMKDH 161
>gi|254465880|ref|ZP_05079291.1| SsrA-binding protein [Rhodobacterales bacterium Y4I]
gi|206686788|gb|EDZ47270.1| SsrA-binding protein [Rhodobacterales bacterium Y4I]
Length = 160
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + +P KV+++NR+AR++Y I E GI+L G+EVK+LR + NI+DSYA E
Sbjct: 1 MAKKKQTSDPNYKVIAENRRARFDYAIEDDIECGIMLEGSEVKALRGNGTNIADSYAAVE 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E+WL NSYIP Y QA F H RR RKLL+S++E+ L+ +R GMTLVP+ IYFN
Sbjct: 61 NGELWLVNSYIPPYEQAKVFKHEERRRRKLLVSRKELADLWNLTQRKGMTLVPLVIYFNH 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KG AKI L +A+GKK +DKRET+ KRDW RQK R+L++
Sbjct: 121 KGRAKIKLGIAKGKKLHDKRETQAKRDWGRQKQRLLKD 158
>gi|110225280|dbj|BAE97631.1| SsrA binding protein [Agromyces sp. KY5R]
Length = 173
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K+++ N+KAR+ Y+I+ ++EAG+VLTG+EVKSLR+ + ++ D Y E E WL
Sbjct: 18 KETGEKLIASNKKARHEYNILDTYEAGLVLTGSEVKSLRMGRASLVDGYVFIERGEAWLD 77
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+YIPEYL + NH PRR RKLLL +++I +LY R GMT+VP+++YF G AK++
Sbjct: 78 AAYIPEYLNGSWTNHAPRRKRKLLLHRQQIDKLYQKTREGGMTIVPLRLYFLD-GRAKVE 136
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ALA+GKK YDKR+T ++R R+ R +R N
Sbjct: 137 IALAKGKKEYDKRQTLRERQDKREAERAMRSKN 169
>gi|145225025|ref|YP_001135703.1| SsrA-binding protein [Mycobacterium gilvum PYR-GCK]
gi|315445394|ref|YP_004078273.1| SsrA-binding protein [Mycobacterium sp. Spyr1]
gi|189046833|sp|A4TDF4|SSRP_MYCGI RecName: Full=SsrA-binding protein
gi|145217511|gb|ABP46915.1| SsrA-binding protein [Mycobacterium gilvum PYR-GCK]
gi|315263697|gb|ADU00439.1| SsrA-binding protein [Mycobacterium sp. Spyr1]
Length = 165
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%)
Query: 1 MSLKSR--GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + + VV+ NRKAR+NY I+ ++EAG+ L GTEVKSLR +++D++AT
Sbjct: 1 MAKKPKSVKDTNNMVVASNRKARHNYSILETYEAGVALVGTEVKSLRDGTASLADAFATV 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
++ EIWL N +IPEY + NH PRRNRKLL+ +REI L +R +TLVP+ +YF
Sbjct: 61 DDGEIWLRNLHIPEYHHGSWTNHAPRRNRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFT 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GK+ +DKR+ +RD R+ R L
Sbjct: 121 G-GKVKVELALARGKQAHDKRQDMARRDAQREVTRELGRR 159
>gi|269140086|ref|YP_003296787.1| small protein B, tmRNA-binding protein [Edwardsiella tarda EIB202]
gi|267985747|gb|ACY85576.1| small protein B, tmRNA-binding protein [Edwardsiella tarda EIB202]
Length = 160
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +N
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+
Sbjct: 61 GEAFLFGATFTPLSVASSHVVCDPTRTRKLLLKERELATLFGSANRDGYTIVPLSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + +A+GKK +DKR+ K R+W + K RI++
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKAREWQQDKARIMKN 157
>gi|186680977|ref|YP_001864173.1| SsrA-binding protein [Nostoc punctiforme PCC 73102]
gi|238689429|sp|B2J722|SSRP_NOSP7 RecName: Full=SsrA-binding protein
gi|186463429|gb|ACC79230.1| SsrA-binding protein [Nostoc punctiforme PCC 73102]
Length = 155
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 99/153 (64%), Gaps = 2/153 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
N KV++DNR+ARY Y I+ ++EAGI LTGTEVKS+R KVN+ D YA N E WL
Sbjct: 4 KNEGYKVIADNRQARYLYEILETYEAGIELTGTEVKSIRAGKVNLQDGYALLRNGEAWLI 63
Query: 67 NSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y FNH PRR RKLLL ++E+ +L V + G+TL+P+K+Y +G K+
Sbjct: 64 NIHISPYNASGQYFNHEPRRTRKLLLHRQELRKLIGKVEQQGLTLIPLKMYLK-RGWVKV 122
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+AL +GKK +DKRE K+R R R ++ +
Sbjct: 123 SIALGKGKKLHDKREDLKRRQDQRDIQRAMKSY 155
>gi|86749722|ref|YP_486218.1| SsrA-binding protein [Rhodopseudomonas palustris HaA2]
gi|123408092|sp|Q2IWV3|SSRP_RHOP2 RecName: Full=SsrA-binding protein
gi|86572750|gb|ABD07307.1| SsrA-binding protein [Rhodopseudomonas palustris HaA2]
Length = 157
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 118/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E
Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L A+ R GMTLVP+K+YFN KG
Sbjct: 61 IWLINATIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LALA+GK+ +DKRETEKKRDW R+K R+LR
Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRAR 156
>gi|295696719|ref|YP_003589957.1| SsrA-binding protein [Bacillus tusciae DSM 2912]
gi|295412321|gb|ADG06813.1| SsrA-binding protein [Bacillus tusciae DSM 2912]
Length = 152
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 77/149 (51%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+KVV+ NRKA +++ I +FEAGIVLTGTE+K++R + N+ DSYA EN EI+L N +
Sbjct: 3 GEKVVAQNRKAYHDFFIEDTFEAGIVLTGTEIKAIRQGRANLKDSYARVENGEIFLHNMH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q NRFNH PRR RKLLL K EI RL+ R G L+P+++Y GL K+++ L
Sbjct: 63 ISPYEQGNRFNHDPRRTRKLLLHKSEILRLHGQSRERGYALIPLRLYLR-HGLCKVEIGL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK YDKR+ KRD R+ R RE
Sbjct: 122 AKGKKLYDKRQDMAKRDAAREIERAFRER 150
>gi|302865527|ref|YP_003834164.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029]
gi|315502075|ref|YP_004080962.1| ssra-binding protein [Micromonospora sp. L5]
gi|302568386|gb|ADL44588.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029]
gi|315408694|gb|ADU06811.1| SsrA-binding protein [Micromonospora sp. L5]
Length = 159
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 71/150 (47%), Positives = 105/150 (70%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KVV+ N+KAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A + EI+L
Sbjct: 5 KGRKVVASNKKARHDYAILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERDGEIYLHAM 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY Q NH PRR RKLLL++ EI RL ++ G+TLVP+++YF+ G AK+++
Sbjct: 65 HIPEYAQGTWTNHEPRRTRKLLLNRLEIDRLLGKLKESGLTLVPLQVYFSD-GWAKVEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK+YDKR+ KRD DR+ R +
Sbjct: 124 LARGKKSYDKRQDLAKRDADREIARAVGRR 153
>gi|237729535|ref|ZP_04560016.1| SsrA-binding protein [Citrobacter sp. 30_2]
gi|226908141|gb|EEH94059.1| SsrA-binding protein [Citrobacter sp. 30_2]
Length = 173
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 14 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 73
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + + P R RKLLL++RE+ LY + RDG T+V + +Y+
Sbjct: 74 GEAFLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRMNRDGYTVVALSLYWK- 132
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 133 NAWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKN 170
>gi|167767905|ref|ZP_02439958.1| hypothetical protein CLOSS21_02446 [Clostridium sp. SS2/1]
gi|167710234|gb|EDS20813.1| hypothetical protein CLOSS21_02446 [Clostridium sp. SS2/1]
Length = 161
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + K++++N+KAR++Y + SFEAGIVL GTEVKSLR +I +S+ +N
Sbjct: 2 MIMSKAKTDGIKLIANNKKARHDYFVEDSFEAGIVLHGTEVKSLRQGHCSIKESFVDIDN 61
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLLL K EI ++ + + G TL+P+K+YF+
Sbjct: 62 GEVFIHQMHISPYEKGNIFNKDPLRTRKLLLHKSEISKMIGQINQKGYTLIPLKVYFSGS 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+ + L +GKK YDKR+ KRD R+ R + N
Sbjct: 122 -LVKVQIGLCKGKKLYDKRQDISKRDQLREAQRDFKVRN 159
>gi|84500548|ref|ZP_00998797.1| SsrA-binding protein [Oceanicola batsensis HTCC2597]
gi|84391501|gb|EAQ03833.1| SsrA-binding protein [Oceanicola batsensis HTCC2597]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + NP KV+++NR+ARY+Y I E GIVL G+EVKSLR N+++SYAT ++
Sbjct: 1 MA-NEKTNPNYKVIAENRRARYDYAIEEDLECGIVLEGSEVKSLREGGSNVAESYATVDD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H RR RKLL+S++E+ RL+ A R GMTLVP+ +YFN +
Sbjct: 60 GELWLVNSYIAPYDQAKTFGHEERRRRKLLVSRKELARLWQATARKGMTLVPLVLYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G+AK+ + +A+GKK DKR+T KRDW+RQK R+L++
Sbjct: 120 GIAKLKIGIAKGKKTVDKRDTSAKRDWNRQKQRLLKQ 156
>gi|99082322|ref|YP_614476.1| SsrA-binding protein [Ruegeria sp. TM1040]
gi|122397597|sp|Q1GDQ2|SSRP_SILST RecName: Full=SsrA-binding protein
gi|99038602|gb|ABF65214.1| SsrA-binding protein [Ruegeria sp. TM1040]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P KV+++NR+AR++Y I + E GI+L G+EVKSLR NI++SYA E
Sbjct: 1 MA-KQKTDPNYKVIAENRRARFDYAIEQDLECGIMLEGSEVKSLRAGGSNIAESYAAVEE 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN +
Sbjct: 60 GELWLVNSYIAPYEQAKVFKHEERRRRKLLVSRKEMADLWNATQRKGMTLVPLVLYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AKI + +A+GKKN+DKRE + KRDW RQK R+L++H
Sbjct: 120 GMAKIKIGIAKGKKNHDKREAQAKRDWSRQKQRLLKDH 157
>gi|238920940|ref|YP_002934455.1| SsrA-binding protein [Edwardsiella ictaluri 93-146]
gi|259511421|sp|C5BAL3|SSRP_EDWI9 RecName: Full=SsrA-binding protein
gi|238870509|gb|ACR70220.1| SsrA-binding protein, putative [Edwardsiella ictaluri 93-146]
Length = 160
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR++Y I FEAG+ L G EVKSLR K NIS+SY +N
Sbjct: 1 MTKKKAYKPGSATIAMNKRARHDYFIEEEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+
Sbjct: 61 GEAFLFGATFTPLNVASSHVVCDPTRTRKLLLKERELASLFGSANRDGYTIVPLSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR+ K R+W + K RI++ N
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKTREWKQDKARIMKNAN 159
>gi|284029704|ref|YP_003379635.1| SsrA-binding protein [Kribbella flavida DSM 17836]
gi|283808997|gb|ADB30836.1| SsrA-binding protein [Kribbella flavida DSM 17836]
Length = 156
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K ++ NRKAR++YHI EAG+VLTGTEVKSLR+ + ++ D++A+ +E+WL
Sbjct: 3 KQTGQKPIAQNRKARHDYHIDDVVEAGLVLTGTEVKSLRLGRASLVDAFASVRGNELWLQ 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY NH PRR RKLLL + E+ +L A+ + G+TLVP+ +YF G AK++
Sbjct: 63 NMHIPEYTHGTWTNHEPRRTRKLLLHRDEMQKLIKAIEQQGVTLVPLSLYFKD-GYAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA A+GKK+YDKR +R R+ R L E
Sbjct: 122 LATARGKKDYDKRHALAERQASREAQRALSER 153
>gi|238793792|ref|ZP_04637413.1| hypothetical protein yinte0001_6940 [Yersinia intermedia ATCC
29909]
gi|238726856|gb|EEQ18389.1| hypothetical protein yinte0001_6940 [Yersinia intermedia ATCC
29909]
Length = 164
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLLGKVNRDGFTVVALSVYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQLDKARIMKHAN 163
>gi|91977113|ref|YP_569772.1| SsrA-binding protein [Rhodopseudomonas palustris BisB5]
gi|123735399|sp|Q136W8|SSRP_RHOPS RecName: Full=SsrA-binding protein
gi|91683569|gb|ABE39871.1| SsrA-binding protein [Rhodopseudomonas palustris BisB5]
Length = 157
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 118/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E
Sbjct: 1 MADKNERAIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSVRSGKSTIAESYADSRGGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R GMTL+P+K+YFN KG
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLIPLKLYFNEKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LALA+GK+ +DKRETEKKRDW R+K R+LR
Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRAR 156
>gi|148654370|ref|YP_001274575.1| SsrA-binding protein [Roseiflexus sp. RS-1]
gi|166223447|sp|A5UPS2|SSRP_ROSS1 RecName: Full=SsrA-binding protein
gi|148566480|gb|ABQ88625.1| SsrA-binding protein [Roseiflexus sp. RS-1]
Length = 158
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+RGN ++VV+DNRKAR++Y I ++EAGI LTG+E+KS+R +VN+ Y + E W
Sbjct: 2 ARGNDIERVVADNRKARHDYFIEETYEAGIALTGSEIKSIRAGQVNLRGGYVRIVDGEAW 61
Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L + +I Y Q+ FNH P R RKLLL +REI R+ V R G TLVP+++Y + A
Sbjct: 62 LYDVHIAPYEQSGAYFNHEPTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGR-RA 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ LA+GKK YDKR+ +R+ R R L+E
Sbjct: 121 KVEIGLARGKKLYDKRDDIARREARRDIERALKER 155
>gi|331695048|ref|YP_004331287.1| SsrA-binding protein [Pseudonocardia dioxanivorans CB1190]
gi|326949737|gb|AEA23434.1| SsrA-binding protein [Pseudonocardia dioxanivorans CB1190]
Length = 161
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 71/153 (46%), Positives = 106/153 (69%), Gaps = 4/153 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +KV++ NR+AR++Y I+ ++EAG+ L GTEVKSLR+ + +++D++AT ++ E
Sbjct: 1 MKEK---GRKVIAQNRRARHDYSILDTYEAGVALLGTEVKSLRLGRASLADAFATIDDGE 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL +IPEY + NH PRR RKLLL + EI RL R G+TLVP+ +YFN G
Sbjct: 58 VWLRGLHIPEYTHGSWTNHEPRRTRKLLLHRAEIERLVGKTREGGLTLVPLSLYFNE-GK 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K ++ALA+GKK+YDKR+ KRD +R+ R
Sbjct: 117 VKCEVALAKGKKSYDKRQDLAKRDAEREVRREF 149
>gi|39935754|ref|NP_948030.1| SsrA-binding protein [Rhodopseudomonas palustris CGA009]
gi|192291341|ref|YP_001991946.1| SsrA-binding protein [Rhodopseudomonas palustris TIE-1]
gi|61216537|sp|Q6N6C9|SSRP_RHOPA RecName: Full=SsrA-binding protein
gi|229559893|sp|B3QJG5|SSRP_RHOPT RecName: Full=SsrA-binding protein
gi|39649607|emb|CAE28129.1| small protein B [Rhodopseudomonas palustris CGA009]
gi|192285090|gb|ACF01471.1| SsrA-binding protein [Rhodopseudomonas palustris TIE-1]
Length = 157
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 92/156 (58%), Positives = 118/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KVV++NRKAR+NY I + E GI LTGTEVKS+R K I++SYA E
Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIDDTIEVGIALTGTEVKSIRNGKTTIAESYADARGSE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLIGAVEREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LALA+GKK +DKRETEKKRDW R+K R+LR
Sbjct: 121 AKLQLALAKGKKLHDKRETEKKRDWSREKGRLLRSR 156
>gi|320182467|gb|EFW57361.1| tmRNA-binding protein SmpB [Shigella boydii ATCC 9905]
Length = 160
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTIVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|300741816|ref|ZP_07071837.1| SsrA-binding protein [Rothia dentocariosa M567]
gi|300381001|gb|EFJ77563.1| SsrA-binding protein [Rothia dentocariosa M567]
Length = 164
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 5/163 (3%)
Query: 1 MSLKSR----GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56
M+ K + +P +++ N+KAR+NY+IV ++EAG+VL GTEVKSLR +I+D +
Sbjct: 1 MAQKKKKGAKTDPNNSIIAQNKKARHNYNIVDTYEAGVVLLGTEVKSLRDGGASITDGFC 60
Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
++ E+WL +I EY NH RR+RKLLL + EI+RL ++ G T+VP+K+Y
Sbjct: 61 HVKDHELWLEGIHIAEYGYGTWTNHSARRSRKLLLHRSEINRLEQKLKETGYTVVPLKLY 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
F+ G K+++ALA GK+ YDKR+ ++R + + R +R N
Sbjct: 121 FSG-GRVKVEIALATGKREYDKRQALRERQDNLEAARAMRYRN 162
>gi|226227387|ref|YP_002761493.1| SsrA-binding protein [Gemmatimonas aurantiaca T-27]
gi|226090578|dbj|BAH39023.1| SsrA-binding protein [Gemmatimonas aurantiaca T-27]
Length = 156
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++++ N++AR++Y I+ ++EAGIVLTGTEVK+LR + N++D++ ++
Sbjct: 1 MATKD-TDEQNELIARNKRARHDYEILETWEAGIVLTGTEVKALRDGRANLTDAFGIVKD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y Q N FNH P R RKLLL +REI RL AV R G+TLVP+ +YF
Sbjct: 60 SEVFLLNLHIGAYGQGNMFNHEPTRTRKLLLHRREIRRLIGAVERQGLTLVPLDLYFKD- 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K +ALA+GK+ +D+RE K+RD DR+ R LR
Sbjct: 119 GRVKTRIALARGKQLHDRREDIKRRDADREIARALRHR 156
>gi|152967722|ref|YP_001363506.1| SsrA-binding protein [Kineococcus radiotolerans SRS30216]
gi|189046831|sp|A6WEK3|SSRP_KINRD RecName: Full=SsrA-binding protein
gi|151362239|gb|ABS05242.1| SsrA-binding protein [Kineococcus radiotolerans SRS30216]
Length = 156
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KV++ NRKAR++Y I +EAG+ L GTEVK+LR+ + ++ D +A + E+WL
Sbjct: 5 TGRKVIASNRKARHDYFIDDVYEAGVSLMGTEVKALRMGRASLVDGFAHIDRGEMWLEGV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY+Q NH PRR RKLLL + EI R VR G+T+VP+ +YF G K+++
Sbjct: 65 HIPEYVQGTWTNHTPRRKRKLLLHREEIDRWAGKVRESGLTIVPLALYFLD-GRVKVEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKKNYDKR ++R R+ R + E
Sbjct: 124 LARGKKNYDKRHALRERQDRREADRAMSER 153
>gi|313903091|ref|ZP_07836485.1| SsrA-binding protein [Thermaerobacter subterraneus DSM 13965]
gi|313466593|gb|EFR62113.1| SsrA-binding protein [Thermaerobacter subterraneus DSM 13965]
Length = 155
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
++V++NRKAR++Y + +FEAG+VLTGTE+KS+R +VN+ DS+A E E+WL
Sbjct: 6 DGVRLVAENRKARHDYFVDETFEAGLVLTGTEIKSIRAGRVNLRDSHARVERGEVWLYGV 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y NRFNH P R RKLLL +REI L VR G TLVP+K+Y G AK++LA
Sbjct: 66 HIAPYEHGNRFNHEPDRPRKLLLHRREIDYLAGRVRERGYTLVPLKLYLKG-GWAKVELA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK+YDKR T +R+ R+ + LR
Sbjct: 125 LARGKKSYDKRATIAQREAQRRIAQALRAR 154
>gi|291299380|ref|YP_003510658.1| SsrA-binding protein [Stackebrandtia nassauensis DSM 44728]
gi|290568600|gb|ADD41565.1| SsrA-binding protein [Stackebrandtia nassauensis DSM 44728]
Length = 159
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 70/152 (46%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K+++ NRKAR++Y I+ ++EAGIVLTGTEVKSLR + +++D+YA N E+ +
Sbjct: 3 KEKGHKLITSNRKARHDYTILDTYEAGIVLTGTEVKSLRNGRASLADAYADLHNGELRIH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I EY + NH PRR RKLLL + EI +L + G+TLVP+ +YF G AK++
Sbjct: 63 GIHIAEYDNGSWTNHPPRRIRKLLLHRAEIDKLVGKLTESGLTLVPLSLYFRD-GWAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ LA+GKK+YDKR+ KRD DR+ R L
Sbjct: 122 IGLARGKKSYDKRQDLAKRDSDREIERALHRR 153
>gi|146312741|ref|YP_001177815.1| SsrA-binding protein [Enterobacter sp. 638]
gi|145319617|gb|ABP61764.1| SsrA-binding protein [Enterobacter sp. 638]
Length = 168
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 9 MTKKKVHKPGSATIALNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVILID 68
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ + P R RKLLL++RE+ L+ + R+G T+V + +Y+
Sbjct: 69 GEAFLFGANFTPLAVASSHYVCDPIRTRKLLLNQRELESLFGRINREGYTVVALSLYWK- 127
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K R+W K RI++
Sbjct: 128 NAWCKVKIGVAKGKKQHDKRSDLKDREWQVDKARIMKH 165
>gi|110225269|dbj|BAE97620.1| SsrA-binding protein [Agromyces sp. KY5R]
Length = 159
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K +K+++ N+KAR+ YHI+ ++EAG+VLTG+EVKSLR+ + ++ D Y E
Sbjct: 1 MSPKE---TGEKLIASNKKARHEYHILDTYEAGLVLTGSEVKSLRMGRASLVDGYVFIER 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +YIPEYL + NH PRR RKLLL +++I +LY R GMT+VP+++YF
Sbjct: 58 GEAWLDAAYIPEYLNGSWTNHAPRRKRKLLLHRQQIDKLYQKTREGGMTIVPLRLYFLD- 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+++ALA+GKK YDKR+T ++R R+ R +R N
Sbjct: 117 GRAKVEIALAKGKKEYDKRQTMRERQDKREAERAMRTRN 155
>gi|16761540|ref|NP_457157.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. CT18]
gi|16766003|ref|NP_461618.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|29143011|ref|NP_806353.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. Ty2]
gi|56414653|ref|YP_151728.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. ATCC 9150]
gi|167553509|ref|ZP_02347258.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|167992470|ref|ZP_02573568.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|168234213|ref|ZP_02659271.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|168244713|ref|ZP_02669645.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|168262137|ref|ZP_02684110.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|168823033|ref|ZP_02835033.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|194446602|ref|YP_002041949.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194447849|ref|YP_002046691.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194470044|ref|ZP_03076028.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194734381|ref|YP_002115697.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197248802|ref|YP_002147623.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197263461|ref|ZP_03163535.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|197363580|ref|YP_002143217.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Paratyphi A str. AKU_12601]
gi|200387705|ref|ZP_03214317.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205353724|ref|YP_002227525.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207858035|ref|YP_002244686.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|213027768|ref|ZP_03342215.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. 404ty]
gi|213052721|ref|ZP_03345599.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
gi|213416794|ref|ZP_03349938.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E01-6750]
gi|213424852|ref|ZP_03357602.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E02-1180]
gi|213650040|ref|ZP_03380093.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. J185]
gi|224584539|ref|YP_002638337.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|238909530|ref|ZP_04653367.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Tennessee str. CDC07-0191]
gi|61247728|sp|P0A2G1|SSRP_SALTY RecName: Full=SsrA-binding protein
gi|61247729|sp|P0A2G2|SSRP_SALTI RecName: Full=SsrA-binding protein
gi|67461315|sp|Q5PFG2|SSRP_SALPA RecName: Full=SsrA-binding protein
gi|187631661|sp|Q57L18|SSRP_SALCH RecName: Full=SsrA-binding protein
gi|187631662|sp|A9MZ63|SSRP_SALPB RecName: Full=SsrA-binding protein
gi|226706530|sp|B5F2A0|SSRP_SALA4 RecName: Full=SsrA-binding protein
gi|226706531|sp|B5QUH5|SSRP_SALEP RecName: Full=SsrA-binding protein
gi|226706532|sp|B5RD96|SSRP_SALG2 RecName: Full=SsrA-binding protein
gi|226706533|sp|B4TS67|SSRP_SALSV RecName: Full=SsrA-binding protein
gi|238689951|sp|B5BEA6|SSRP_SALPK RecName: Full=SsrA-binding protein
gi|238690625|sp|B4TE63|SSRP_SALHS RecName: Full=SsrA-binding protein
gi|238693593|sp|B4T2C5|SSRP_SALNS RecName: Full=SsrA-binding protein
gi|254778377|sp|C0PW29|SSRP_SALPC RecName: Full=SsrA-binding protein
gi|25317478|pir||AC0835 SsrA (tmRNA)-binding protein [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|16421235|gb|AAL21577.1| small protein B [Salmonella enterica subsp. enterica serovar
Typhimurium str. LT2]
gi|16503841|emb|CAD05866.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138644|gb|AAO70213.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56128910|gb|AAV78416.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|194405265|gb|ACF65487.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Newport str. SL254]
gi|194406153|gb|ACF66372.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL476]
gi|194456408|gb|EDX45247.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Kentucky str. CVM29188]
gi|194709883|gb|ACF89104.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Schwarzengrund str. CVM19633]
gi|197095057|emb|CAR60603.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197212505|gb|ACH49902.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|197241716|gb|EDY24336.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA23]
gi|199604803|gb|EDZ03348.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Virchow str. SL491]
gi|205273505|emb|CAR38482.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205322056|gb|EDZ09895.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Saintpaul str. SARA29]
gi|205329322|gb|EDZ16086.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
4,[5],12:i:- str. CVM23701]
gi|205331835|gb|EDZ18599.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Kentucky str. CDC 191]
gi|205336461|gb|EDZ23225.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Heidelberg str. SL486]
gi|205340643|gb|EDZ27407.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Weltevreden str. HI_N05-537]
gi|205349260|gb|EDZ35891.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Hadar str. RI_05P066]
gi|206709838|emb|CAR34190.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224469066|gb|ACN46896.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Paratyphi C strain RKS4594]
gi|261247878|emb|CBG25708.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994832|gb|ACY89717.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhimurium str. 14028S]
gi|301159247|emb|CBW18762.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|321223479|gb|EFX48544.1| tmRNA-binding protein SmpB [Salmonella enterica subsp. enterica
serovar Typhimurium str. TN061786]
gi|326624453|gb|EGE30798.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Dublin str. 3246]
Length = 160
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157
>gi|220934138|ref|YP_002513037.1| SsrA-binding protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219995448|gb|ACL72050.1| SsrA-binding protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 157
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS +++ ++ N+KAR+ Y I FEAG+ L G EVKSLR +V +++SY ++
Sbjct: 1 MSKQAKQ-AGTSTIALNKKARHEYFIEERFEAGLALEGWEVKSLRDGRVQLNESYVLIKD 59
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++I + + P R+RKLLL K E+++L V R G TL P+ +Y+
Sbjct: 60 GEAWLFGAHISPLPTASTHIHPDPMRSRKLLLHKEELNKLIGQVERKGYTLTPLALYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+G AK+++ LA+GKK +DKR T K RDW R+K R L++
Sbjct: 119 RGRAKLEIGLAKGKKEHDKRATIKDRDWQREKERALKK 156
>gi|251790878|ref|YP_003005599.1| SsrA-binding protein [Dickeya zeae Ech1591]
gi|247539499|gb|ACT08120.1| SsrA-binding protein [Dickeya zeae Ech1591]
Length = 160
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEIEAGLALQGWEVKSLRAGKANISDSYVLMRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATFTPLHGASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKRE K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKEHDKREDIKEREWKLDKARIMKN 157
>gi|119511610|ref|ZP_01630717.1| SsrA-binding protein [Nodularia spumigena CCY9414]
gi|119463771|gb|EAW44701.1| SsrA-binding protein [Nodularia spumigena CCY9414]
Length = 155
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 105/159 (66%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS KS+ KV+SDNR+ARY Y I+ +FEAG+ LTGTEVKS+R +VN+ D YA N
Sbjct: 1 MSEKSQS---YKVISDNRQARYLYEILETFEAGVELTGTEVKSIRAGRVNLQDGYALIRN 57
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL N +I Y FNH PRR RKLLL ++EI +L V ++G+TLVP+K+Y
Sbjct: 58 GEAWLINVHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQEGLTLVPLKMYLK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G K+ +AL +GKK +DKRE+ K+R R R ++ +
Sbjct: 117 RGWVKVSIALGKGKKLHDKRESLKRRQDQRDMQRAMKNY 155
>gi|120556277|ref|YP_960628.1| SsrA-binding protein [Marinobacter aquaeolei VT8]
gi|187611485|sp|A1U622|SSRP_MARAV RecName: Full=SsrA-binding protein
gi|120326126|gb|ABM20441.1| SsrA-binding protein [Marinobacter aquaeolei VT8]
Length = 160
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K P ++ N+KA++ YHI FEAG+ L G EVKSLR K + D+Y ++
Sbjct: 1 MSKKKANAPTSNTIALNKKAKHEYHIEERFEAGLALLGWEVKSLRAGKAQLVDAYVLLKD 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL +EI ++ V + G T +P+ +Y+
Sbjct: 61 GEAWLLGSHITPLNTASTHVIADPTRTRKLLLHAKEIAKIVGQVNQAGYTCIPLALYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K K ++AL +GKK +DKR TEK+RDW+RQK RI+RE N
Sbjct: 120 KNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRIMREAN 159
>gi|298291609|ref|YP_003693548.1| SsrA-binding protein [Starkeya novella DSM 506]
gi|296928120|gb|ADH88929.1| SsrA-binding protein [Starkeya novella DSM 506]
Length = 157
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 87/156 (55%), Positives = 119/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KKVV+DNR+AR++Y I FEAGI L+GTEVKSLR K +++SY + + E
Sbjct: 1 MAEKKTQAKKVVADNRRARFDYEIGEVFEAGIALSGTEVKSLRGGKATVAESYVSAKTGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
L NS+IPEYLQANRFNH PRR RKLL+ KREI +L+ AV R+GMT+VP++IYFN +G
Sbjct: 61 AILYNSFIPEYLQANRFNHEPRRPRKLLMHKREIAKLWQAVEREGMTVVPLRIYFNEQGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++LA+A+G+K +DKRE K++DW R K R++R+
Sbjct: 121 AKVELAIARGRKAHDKREALKEKDWARDKQRLMRDR 156
>gi|313109750|ref|ZP_07795690.1| SmpB protein [Pseudomonas aeruginosa 39016]
gi|310882192|gb|EFQ40786.1| SmpB protein [Pseudomonas aeruginosa 39016]
Length = 253
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KA ++Y I + FEAG+ L G EVKSLR K + DSY ++
Sbjct: 95 MAKQKKHPSG--TIAQNKKALHDYFIEQRFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 152
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL KRE+ +L+ AV++ G V + +Y+
Sbjct: 153 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLHKRELGKLFGAVQQKGYACVALSMYWKK 212
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K ++ALA+GKK++DKR TEK+RD DR+ R +R
Sbjct: 213 H-LVKCEIALAKGKKDFDKRHTEKERDSDREIQRAMRH 249
>gi|187631660|sp|A9MGS5|SSRP_SALAR RecName: Full=SsrA-binding protein
Length = 160
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKH 157
>gi|311111707|ref|YP_003982929.1| SsrA-binding protein [Rothia dentocariosa ATCC 17931]
gi|310943201|gb|ADP39495.1| SsrA-binding protein [Rothia dentocariosa ATCC 17931]
Length = 164
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 5/163 (3%)
Query: 1 MSLKSR----GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56
M+ K + +P +++ N+KAR+NY+IV ++EAG+VL GTEVKSLR +I+D +
Sbjct: 1 MAQKKKKGSKTDPNNSIIAQNKKARHNYNIVDTYEAGMVLLGTEVKSLRDGGASITDGFC 60
Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
++ E+WL +I EY NH RR+RKLLL + EI+RL ++ G T+VP+K+Y
Sbjct: 61 HVKDHELWLEGIHIAEYGYGTWTNHSARRSRKLLLHRSEINRLEQKLKETGYTVVPLKLY 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
F+ G K+++ALA GK+ YDKR+ ++R + + R +R N
Sbjct: 121 FSG-GRVKVEIALATGKREYDKRQALRERQDNLEAARAMRYRN 162
>gi|163852607|ref|YP_001640650.1| SsrA-binding protein [Methylobacterium extorquens PA1]
gi|218531448|ref|YP_002422264.1| SsrA-binding protein [Methylobacterium chloromethanicum CM4]
gi|240139941|ref|YP_002964418.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium
extorquens AM1]
gi|254562364|ref|YP_003069459.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium
extorquens DM4]
gi|226706527|sp|A9VYY7|SSRP_METEP RecName: Full=SsrA-binding protein
gi|254778368|sp|B7KVC8|SSRP_METC4 RecName: Full=SsrA-binding protein
gi|163664212|gb|ABY31579.1| SsrA-binding protein [Methylobacterium extorquens PA1]
gi|218523751|gb|ACK84336.1| SsrA-binding protein [Methylobacterium chloromethanicum CM4]
gi|240009915|gb|ACS41141.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium
extorquens AM1]
gi|254269642|emb|CAX25614.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium
extorquens DM4]
Length = 157
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 117/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P ++VV+DNR ARY+Y I + EAGI LTGTEVKSLR K I +SYA ++
Sbjct: 1 MAPKPDPGRRVVADNRSARYHYAIEDTLEAGIALTGTEVKSLRGGKATIGESYAGPSGND 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+ L N+YIPEYL+ANRFNH +R R+LLL +R+I++L A +R G T++P+KIYFN KG
Sbjct: 61 LMLFNAYIPEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVIPLKIYFNDKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++L L +GK+ +DKRE+ K+RDWDR K R++R+
Sbjct: 121 AKVELGLGKGKQLHDKRESVKQRDWDRDKARLMRDK 156
>gi|75908542|ref|YP_322838.1| SsrA-binding protein [Anabaena variabilis ATCC 29413]
gi|123609519|sp|Q3MAP3|SSRP_ANAVT RecName: Full=SsrA-binding protein
gi|75702267|gb|ABA21943.1| SsrA-binding protein [Anabaena variabilis ATCC 29413]
Length = 155
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS KS KV++DNR+ARY Y I+ +FEAGI LTGTEVKS+R KVN+ D YA +
Sbjct: 1 MSDKSES---YKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRD 57
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EIWL N++I Y FNH PRR RKLLL ++EI +L V + G+TLVP+K+Y
Sbjct: 58 GEIWLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G K+ +AL +GKK +DKRE+ K+R R R ++ +
Sbjct: 117 RGWVKVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY 155
>gi|309791415|ref|ZP_07685922.1| SsrA-binding protein [Oscillochloris trichoides DG6]
gi|308226548|gb|EFO80269.1| SsrA-binding protein [Oscillochloris trichoides DG6]
Length = 158
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 78/160 (48%), Positives = 112/160 (70%), Gaps = 5/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + VV+DNRKAR++Y I ++EAGIVLTG+E+KS+R ++N+ S+A N
Sbjct: 1 MSSK---DTGPGVVADNRKARHDYLIEETYEAGIVLTGSEIKSVRAGRINLRGSFARIFN 57
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DEI+L +S+I Y Q+ FNH P R RKLLL +REI RL +R+ G+T+VP+K+YF
Sbjct: 58 DEIFLYDSHISPYEQSGTYFNHVPTRPRKLLLHRREISRLDGLIRQKGLTIVPLKVYFKG 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ AK++L +A+GKKNYDKRE KRD +R R+++ +
Sbjct: 118 R-RAKVELGVARGKKNYDKREDIAKRDAERDIERVMKSRD 156
>gi|226328164|ref|ZP_03803682.1| hypothetical protein PROPEN_02055 [Proteus penneri ATCC 35198]
gi|225203868|gb|EEG86222.1| hypothetical protein PROPEN_02055 [Proteus penneri ATCC 35198]
Length = 160
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKSHKPGSATIALNKRARHEYFIEDEIEAGLALQGWEVKSLRAGKANISDSYVVMRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + + P R RKLLL +RE+ LY + RDG T+V + +Y+
Sbjct: 61 GEAYLFGATVTPLNVASTHVVCDPTRTRKLLLKQRELDNLYGQINRDGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + +A+GKK++DKRET K R+W K RI++ N
Sbjct: 120 NAWCKIKIGVAKGKKDHDKRETIKDREWKLDKARIMKNAN 159
>gi|237809008|ref|YP_002893448.1| SsrA-binding protein [Tolumonas auensis DSM 9187]
gi|259511432|sp|C4L8Z2|SSRP_TOLAT RecName: Full=SsrA-binding protein
gi|237501269|gb|ACQ93862.1| SsrA-binding protein [Tolumonas auensis DSM 9187]
Length = 160
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS ++ N+KAR++Y I +EAG+ L G EVKSLR K +I DSY +N
Sbjct: 1 MSKNKTKKGGDSTIALNKKARHDYFIEDKYEAGLALQGWEVKSLRAGKAHIGDSYVLLQN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL K E+ RL V R TL+P+ +Y++
Sbjct: 61 GEAFLFGATITPLNVASTHVVCDPTRIRKLLLKKSELERLIGLVERQSYTLIPLSMYWS- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ K+++ LA+GKK +DKRE K+R+W R K R+++
Sbjct: 120 RAWVKVEIGLAKGKKEHDKREDLKEREWQRDKERMMKNK 158
>gi|110642780|ref|YP_670510.1| SsrA-binding protein [Escherichia coli 536]
gi|123343725|sp|Q0TEM0|SSRP_ECOL5 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|110344372|gb|ABG70609.1| SsrA-binding protein [Escherichia coli 536]
Length = 160
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|157148132|ref|YP_001455451.1| hypothetical protein CKO_03942 [Citrobacter koseri ATCC BAA-895]
gi|166222378|sp|A8ANF2|SSRP_CITK8 RecName: Full=SsrA-binding protein
gi|157085337|gb|ABV15015.1| hypothetical protein CKO_03942 [Citrobacter koseri ATCC BAA-895]
Length = 160
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157
>gi|304311932|ref|YP_003811530.1| SsrA-binding protein [gamma proteobacterium HdN1]
gi|301797665|emb|CBL45886.1| SsrA-binding protein [gamma proteobacterium HdN1]
Length = 157
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS +G+ ++ NRKAR+ +HI +FEAG++L G EVKSLR KV+ ++SY ++
Sbjct: 1 MSKAKKGDS-DNSIAQNRKARHEFHIEDTFEAGLMLEGWEVKSLRAGKVSFNESYVLMKD 59
Query: 61 DEIWLTNSYIPE-YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L +I + P R RKLLL RE+ +++ A+ + G T VP+ +Y+
Sbjct: 60 GEAFLWGMHISPLLSASTHVTPNPTRTRKLLLHARELGKIHGAITKKGYTCVPLSLYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK +ALA GK+ +DKR+ EK RDW+R+K R++R+
Sbjct: 119 NGRAKCLIALATGKQTHDKRQAEKSRDWNREKQRLVRK 156
>gi|149203291|ref|ZP_01880261.1| SsrA-binding protein [Roseovarius sp. TM1035]
gi|149143124|gb|EDM31163.1| SsrA-binding protein [Roseovarius sp. TM1035]
Length = 158
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 88/158 (55%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K++ NP KV+++NR+ARY+Y I E GI+L G+EVKSLRV+ NI++SYA EN
Sbjct: 1 MA-KAKENPNYKVIAENRRARYDYAIEDDLECGIILGGSEVKSLRVNSANIAESYAMVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H +R RKLL+SK+E+ RL++ +R GMTLVP+ +YFN +
Sbjct: 60 GELWLVNSYIAPYEQAKTFGHDEKRRRKLLVSKKELSRLWSETQRKGMTLVPLVLYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AK+ + +A+GKKN+DKRETE KRDW RQK R+L++H
Sbjct: 120 GMAKLKIGIAKGKKNHDKRETEAKRDWARQKQRLLKDH 157
>gi|85715066|ref|ZP_01046050.1| SsrA-binding protein [Nitrobacter sp. Nb-311A]
gi|85697981|gb|EAQ35854.1| SsrA-binding protein [Nitrobacter sp. Nb-311A]
Length = 157
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 94/156 (60%), Positives = 122/156 (78%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +G KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E
Sbjct: 1 MAGKGERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSIRNGKTTIAESYADSKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL NS IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINSNIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVDREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR
Sbjct: 121 AKLLLAIAKGKKLHDKRESEKKRDWGREKGRLLRAR 156
>gi|17232562|ref|NP_489110.1| SsrA-binding protein [Nostoc sp. PCC 7120]
gi|22096164|sp|Q8YM70|SSRP_ANASP RecName: Full=SsrA-binding protein
gi|17134208|dbj|BAB76769.1| tmRNA-binding protein [Nostoc sp. PCC 7120]
Length = 155
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS KS KV++DNR+ARY Y I+ +FEAGI LTGTEVKS+R KVN+ D YA +
Sbjct: 1 MSDKSES---YKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRD 57
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EIWL N++I Y FNH PRR RKLLL ++EI +L V + G+TLVP+K+Y
Sbjct: 58 GEIWLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G K+ +AL +GKK +DKRE+ K+R R R ++ +
Sbjct: 117 RGWVKVSIALGKGKKLHDKRESLKRRQDQRDMQRAMKNY 155
>gi|15832736|ref|NP_311509.1| SsrA-binding protein [Escherichia coli O157:H7 str. Sakai]
gi|16130539|ref|NP_417110.1| trans-translation protein [Escherichia coli str. K-12 substr.
MG1655]
gi|24113957|ref|NP_708467.1| SsrA-binding protein [Shigella flexneri 2a str. 301]
gi|26248984|ref|NP_755024.1| SsrA-binding protein [Escherichia coli CFT073]
gi|30064018|ref|NP_838189.1| SsrA-binding protein [Shigella flexneri 2a str. 2457T]
gi|74313176|ref|YP_311595.1| SsrA-binding protein [Shigella sonnei Ss046]
gi|82545163|ref|YP_409110.1| SsrA-binding protein [Shigella boydii Sb227]
gi|82777978|ref|YP_404327.1| SsrA-binding protein [Shigella dysenteriae Sd197]
gi|89109420|ref|AP_003200.1| trans-translation protein [Escherichia coli str. K-12 substr.
W3110]
gi|91211955|ref|YP_541941.1| SsrA-binding protein [Escherichia coli UTI89]
gi|110806714|ref|YP_690234.1| SsrA-binding protein [Shigella flexneri 5 str. 8401]
gi|117624840|ref|YP_853753.1| SsrA-binding protein [Escherichia coli APEC O1]
gi|157155286|ref|YP_001463939.1| SsrA-binding protein [Escherichia coli E24377A]
gi|157162095|ref|YP_001459413.1| SsrA-binding protein [Escherichia coli HS]
gi|168752580|ref|ZP_02777602.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4113]
gi|168755362|ref|ZP_02780369.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4401]
gi|168762412|ref|ZP_02787419.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4501]
gi|168768707|ref|ZP_02793714.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4486]
gi|168774854|ref|ZP_02799861.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4196]
gi|168778596|ref|ZP_02803603.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4076]
gi|168789522|ref|ZP_02814529.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC869]
gi|168800499|ref|ZP_02825506.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC508]
gi|170019104|ref|YP_001724058.1| SsrA-binding protein [Escherichia coli ATCC 8739]
gi|170082222|ref|YP_001731542.1| trans-translation protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170679596|ref|YP_001744803.1| SsrA-binding protein [Escherichia coli SMS-3-5]
gi|170765851|ref|ZP_02900662.1| SsrA-binding protein [Escherichia albertii TW07627]
gi|187732010|ref|YP_001881410.1| SsrA-binding protein [Shigella boydii CDC 3083-94]
gi|191167080|ref|ZP_03028901.1| SsrA-binding protein [Escherichia coli B7A]
gi|191171403|ref|ZP_03032952.1| SsrA-binding protein [Escherichia coli F11]
gi|193065979|ref|ZP_03047038.1| SsrA-binding protein [Escherichia coli E22]
gi|194427889|ref|ZP_03060435.1| SsrA-binding protein [Escherichia coli B171]
gi|194433009|ref|ZP_03065292.1| SsrA-binding protein [Shigella dysenteriae 1012]
gi|194439464|ref|ZP_03071540.1| SsrA-binding protein [Escherichia coli 101-1]
gi|195939671|ref|ZP_03085053.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4024]
gi|208806356|ref|ZP_03248693.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4206]
gi|208811865|ref|ZP_03253194.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4045]
gi|208818883|ref|ZP_03259203.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4042]
gi|209399817|ref|YP_002272089.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4115]
gi|209920094|ref|YP_002294178.1| SsrA-binding protein [Escherichia coli SE11]
gi|215487969|ref|YP_002330400.1| SsrA-binding protein [Escherichia coli O127:H6 str. E2348/69]
gi|217327278|ref|ZP_03443361.1| SsrA-binding protein [Escherichia coli O157:H7 str. TW14588]
gi|218547862|ref|YP_002381653.1| SsrA-binding protein [Escherichia fergusonii ATCC 35469]
gi|218555199|ref|YP_002388112.1| SsrA-binding protein [Escherichia coli IAI1]
gi|218559539|ref|YP_002392452.1| SsrA-binding protein [Escherichia coli S88]
gi|218690737|ref|YP_002398949.1| SsrA-binding protein [Escherichia coli ED1a]
gi|218696243|ref|YP_002403910.1| SsrA-binding protein [Escherichia coli 55989]
gi|218701131|ref|YP_002408760.1| SsrA-binding protein [Escherichia coli IAI39]
gi|218706120|ref|YP_002413639.1| SsrA-binding protein [Escherichia coli UMN026]
gi|237706792|ref|ZP_04537273.1| trans-translation protein [Escherichia sp. 3_2_53FAA]
gi|238901779|ref|YP_002927575.1| trans-translation protein [Escherichia coli BW2952]
gi|253772487|ref|YP_003035318.1| SsrA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254037695|ref|ZP_04871753.1| trans-translation protein [Escherichia sp. 1_1_43]
gi|254162589|ref|YP_003045697.1| SsrA-binding protein [Escherichia coli B str. REL606]
gi|254794565|ref|YP_003079402.1| SsrA-binding protein [Escherichia coli O157:H7 str. TW14359]
gi|256019562|ref|ZP_05433427.1| SsrA-binding protein [Shigella sp. D9]
gi|256024854|ref|ZP_05438719.1| SsrA-binding protein [Escherichia sp. 4_1_40B]
gi|260845301|ref|YP_003223079.1| trans-translation protein SmpB [Escherichia coli O103:H2 str.
12009]
gi|260856708|ref|YP_003230599.1| trans-translation protein SmpB [Escherichia coli O26:H11 str.
11368]
gi|260869300|ref|YP_003235702.1| trans-translation protein SmpB [Escherichia coli O111:H- str.
11128]
gi|261227502|ref|ZP_05941783.1| trans-translation protein [Escherichia coli O157:H7 str. FRIK2000]
gi|261255696|ref|ZP_05948229.1| trans-translation protein SmpB [Escherichia coli O157:H7 str.
FRIK966]
gi|291283891|ref|YP_003500709.1| SsrA-binding protein [Escherichia coli O55:H7 str. CB9615]
gi|293406126|ref|ZP_06650052.1| SsrA-binding protein [Escherichia coli FVEC1412]
gi|293412009|ref|ZP_06654732.1| SsrA-binding protein [Escherichia coli B354]
gi|293415890|ref|ZP_06658530.1| SsrA-binding protein [Escherichia coli B185]
gi|293448971|ref|ZP_06663392.1| SsrA-binding protein [Escherichia coli B088]
gi|297516511|ref|ZP_06934897.1| SsrA-binding protein [Escherichia coli OP50]
gi|298381860|ref|ZP_06991457.1| SsrA-binding protein [Escherichia coli FVEC1302]
gi|300819940|ref|ZP_07100122.1| SsrA-binding protein [Escherichia coli MS 107-1]
gi|300825178|ref|ZP_07105268.1| SsrA-binding protein [Escherichia coli MS 119-7]
gi|300900193|ref|ZP_07118382.1| SsrA-binding protein [Escherichia coli MS 198-1]
gi|300905059|ref|ZP_07122869.1| SsrA-binding protein [Escherichia coli MS 84-1]
gi|300921166|ref|ZP_07137543.1| SsrA-binding protein [Escherichia coli MS 115-1]
gi|300925614|ref|ZP_07141483.1| SsrA-binding protein [Escherichia coli MS 182-1]
gi|300930654|ref|ZP_07146041.1| SsrA-binding protein [Escherichia coli MS 187-1]
gi|300940958|ref|ZP_07155482.1| SsrA-binding protein [Escherichia coli MS 21-1]
gi|300949016|ref|ZP_07163068.1| SsrA-binding protein [Escherichia coli MS 116-1]
gi|300957405|ref|ZP_07169619.1| SsrA-binding protein [Escherichia coli MS 175-1]
gi|300986799|ref|ZP_07177790.1| SsrA-binding protein [Escherichia coli MS 45-1]
gi|300990710|ref|ZP_07179295.1| SsrA-binding protein [Escherichia coli MS 200-1]
gi|301026403|ref|ZP_07189847.1| SsrA-binding protein [Escherichia coli MS 69-1]
gi|301026771|ref|ZP_07190176.1| SsrA-binding protein [Escherichia coli MS 196-1]
gi|301050491|ref|ZP_07197369.1| SsrA-binding protein [Escherichia coli MS 185-1]
gi|301305735|ref|ZP_07211822.1| SsrA-binding protein [Escherichia coli MS 124-1]
gi|301326741|ref|ZP_07220055.1| SsrA-binding protein [Escherichia coli MS 78-1]
gi|301644063|ref|ZP_07244078.1| SsrA-binding protein [Escherichia coli MS 146-1]
gi|306812463|ref|ZP_07446661.1| SsrA-binding protein [Escherichia coli NC101]
gi|307139340|ref|ZP_07498696.1| SsrA-binding protein [Escherichia coli H736]
gi|307315069|ref|ZP_07594653.1| SsrA-binding protein [Escherichia coli W]
gi|309784636|ref|ZP_07679271.1| ssrA-binding protein [Shigella dysenteriae 1617]
gi|309794131|ref|ZP_07688555.1| SsrA-binding protein [Escherichia coli MS 145-7]
gi|312965551|ref|ZP_07779782.1| ssrA-binding protein [Escherichia coli 2362-75]
gi|312973137|ref|ZP_07787310.1| ssrA-binding protein [Escherichia coli 1827-70]
gi|331643336|ref|ZP_08344467.1| SsrA-binding protein [Escherichia coli H736]
gi|331648362|ref|ZP_08349450.1| SsrA-binding protein [Escherichia coli M605]
gi|331654076|ref|ZP_08355076.1| SsrA-binding protein [Escherichia coli M718]
gi|331658767|ref|ZP_08359709.1| SsrA-binding protein [Escherichia coli TA206]
gi|331664185|ref|ZP_08365094.1| SsrA-binding protein [Escherichia coli TA143]
gi|331669370|ref|ZP_08370216.1| SsrA-binding protein [Escherichia coli TA271]
gi|331674057|ref|ZP_08374819.1| SsrA-binding protein [Escherichia coli TA280]
gi|331678610|ref|ZP_08379284.1| SsrA-binding protein [Escherichia coli H591]
gi|331684275|ref|ZP_08384867.1| SsrA-binding protein [Escherichia coli H299]
gi|67472569|sp|P0A832|SSRP_ECOLI RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|67472570|sp|P0A833|SSRP_ECOL6 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|67472571|sp|P0A834|SSRP_ECO57 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|67472572|sp|P0A835|SSRP_SHIFL RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|122422823|sp|Q1R8A4|SSRP_ECOUT RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|123047956|sp|Q0T186|SSRP_SHIF8 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|123558873|sp|Q31XC6|SSRP_SHIBS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|123561868|sp|Q32CW9|SSRP_SHIDS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|123616429|sp|Q3YYQ2|SSRP_SHISS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|166223216|sp|A1AEE9|SSRP_ECOK1 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|166979668|sp|A7ZQ60|SSRP_ECO24 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|166979669|sp|A8A3C6|SSRP_ECOHS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|189046826|sp|B1IVL4|SSRP_ECOLC RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226706522|sp|B5Z237|SSRP_ECO5E RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226706523|sp|B6I641|SSRP_ECOSE RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226734251|sp|B7MIV7|SSRP_ECO45 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226734252|sp|B7NSB8|SSRP_ECO7I RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226734253|sp|B7M989|SSRP_ECO8A RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226734254|sp|B7N6K5|SSRP_ECOLU RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226734255|sp|B1LPC7|SSRP_ECOSM RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|226734256|sp|B7LUV4|SSRP_ESCF3 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|229559865|sp|B1XBU0|SSRP_ECODH RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|238691733|sp|B2TYP2|SSRP_SHIB3 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|254778359|sp|B7UH68|SSRP_ECO27 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|254778360|sp|B7LDK8|SSRP_ECO55 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|254778361|sp|B7MYQ8|SSRP_ECO81 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|259511420|sp|C4ZYN7|SSRP_ECOBW RecName: Full=SsrA-binding protein; AltName: Full=Small protein B
gi|26109390|gb|AAN81592.1|AE016764_274 SsrA-binding protein [Escherichia coli CFT073]
gi|216668|dbj|BAA02062.1| small protein [Escherichia coli K-12]
gi|1033116|gb|AAA79790.1| smpB [Escherichia coli str. K-12 substr. MG1655]
gi|1788973|gb|AAC75669.1| trans-translation protein [Escherichia coli str. K-12 substr.
MG1655]
gi|13362953|dbj|BAB36905.1| small protein B [Escherichia coli O157:H7 str. Sakai]
gi|24053066|gb|AAN44174.1| ssrA(tmRNA)-binding protein [Shigella flexneri 2a str. 301]
gi|30042274|gb|AAP17999.1| ssrA(tmRNA)-binding protein [Shigella flexneri 2a str. 2457T]
gi|51773739|emb|CAH23264.1| small protein B [Enterobacteria phage CP-1639]
gi|73856653|gb|AAZ89360.1| small protein B [Shigella sonnei Ss046]
gi|81242126|gb|ABB62836.1| small protein B [Shigella dysenteriae Sd197]
gi|81246574|gb|ABB67282.1| small protein B [Shigella boydii Sb227]
gi|85675484|dbj|BAA16505.2| trans-translation protein [Escherichia coli str. K12 substr. W3110]
gi|91073529|gb|ABE08410.1| SsrA-binding protein [Escherichia coli UTI89]
gi|110616262|gb|ABF04929.1| small protein B [Shigella flexneri 5 str. 8401]
gi|115513964|gb|ABJ02039.1| trans-translation protein [Escherichia coli APEC O1]
gi|157067775|gb|ABV07030.1| SsrA-binding protein [Escherichia coli HS]
gi|157077316|gb|ABV17024.1| SsrA-binding protein [Escherichia coli E24377A]
gi|169754032|gb|ACA76731.1| SsrA-binding protein [Escherichia coli ATCC 8739]
gi|169890057|gb|ACB03764.1| trans-translation protein [Escherichia coli str. K-12 substr.
DH10B]
gi|170124997|gb|EDS93928.1| SsrA-binding protein [Escherichia albertii TW07627]
gi|170517314|gb|ACB15492.1| SsrA-binding protein [Escherichia coli SMS-3-5]
gi|187429002|gb|ACD08276.1| SsrA-binding protein [Shigella boydii CDC 3083-94]
gi|187769589|gb|EDU33433.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4196]
gi|188013615|gb|EDU51737.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4113]
gi|189003291|gb|EDU72277.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4076]
gi|189357274|gb|EDU75693.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4401]
gi|189362100|gb|EDU80519.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4486]
gi|189367235|gb|EDU85651.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4501]
gi|189370864|gb|EDU89280.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC869]
gi|189377200|gb|EDU95616.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC508]
gi|190902862|gb|EDV62590.1| SsrA-binding protein [Escherichia coli B7A]
gi|190908337|gb|EDV67927.1| SsrA-binding protein [Escherichia coli F11]
gi|192926393|gb|EDV81028.1| SsrA-binding protein [Escherichia coli E22]
gi|194414122|gb|EDX30398.1| SsrA-binding protein [Escherichia coli B171]
gi|194418736|gb|EDX34822.1| SsrA-binding protein [Shigella dysenteriae 1012]
gi|194421640|gb|EDX37651.1| SsrA-binding protein [Escherichia coli 101-1]
gi|208726157|gb|EDZ75758.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4206]
gi|208733142|gb|EDZ81829.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4045]
gi|208739006|gb|EDZ86688.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4042]
gi|209161217|gb|ACI38650.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4115]
gi|209762448|gb|ACI79536.1| small protein B [Escherichia coli]
gi|209762450|gb|ACI79537.1| small protein B [Escherichia coli]
gi|209762452|gb|ACI79538.1| small protein B [Escherichia coli]
gi|209762454|gb|ACI79539.1| small protein B [Escherichia coli]
gi|209762456|gb|ACI79540.1| small protein B [Escherichia coli]
gi|209913353|dbj|BAG78427.1| small protein B [Escherichia coli SE11]
gi|215266041|emb|CAS10456.1| trans-translation protein [Escherichia coli O127:H6 str. E2348/69]
gi|217319645|gb|EEC28070.1| SsrA-binding protein [Escherichia coli O157:H7 str. TW14588]
gi|218352975|emb|CAU98775.1| trans-translation protein [Escherichia coli 55989]
gi|218355403|emb|CAQ88012.1| trans-translation protein [Escherichia fergusonii ATCC 35469]
gi|218361967|emb|CAQ99568.1| trans-translation protein [Escherichia coli IAI1]
gi|218366308|emb|CAR04059.1| trans-translation protein [Escherichia coli S88]
gi|218371117|emb|CAR18945.1| trans-translation protein [Escherichia coli IAI39]
gi|218428301|emb|CAR09225.2| trans-translation protein [Escherichia coli ED1a]
gi|218433217|emb|CAR14115.1| trans-translation protein [Escherichia coli UMN026]
gi|222034321|emb|CAP77062.1| SsrA-binding protein [Escherichia coli LF82]
gi|226839319|gb|EEH71340.1| trans-translation protein [Escherichia sp. 1_1_43]
gi|226899832|gb|EEH86091.1| trans-translation protein [Escherichia sp. 3_2_53FAA]
gi|238863695|gb|ACR65693.1| trans-translation protein [Escherichia coli BW2952]
gi|242378214|emb|CAQ32989.1| small protein B [Escherichia coli BL21(DE3)]
gi|253323531|gb|ACT28133.1| SsrA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|253974490|gb|ACT40161.1| SsrA-binding protein [Escherichia coli B str. REL606]
gi|253978657|gb|ACT44327.1| SsrA-binding protein [Escherichia coli BL21(DE3)]
gi|254593965|gb|ACT73326.1| trans-translation protein [Escherichia coli O157:H7 str. TW14359]
gi|257755357|dbj|BAI26859.1| trans-translation protein SmpB [Escherichia coli O26:H11 str.
11368]
gi|257760448|dbj|BAI31945.1| trans-translation protein SmpB [Escherichia coli O103:H2 str.
12009]
gi|257765656|dbj|BAI37151.1| trans-translation protein SmpB [Escherichia coli O111:H- str.
11128]
gi|260448307|gb|ACX38729.1| SsrA-binding protein [Escherichia coli DH1]
gi|281179665|dbj|BAI55995.1| small protein B [Escherichia coli SE15]
gi|281602029|gb|ADA75013.1| SsrA-binding protein [Shigella flexneri 2002017]
gi|284922565|emb|CBG35652.1| SsrA-binding protein [Escherichia coli 042]
gi|290763764|gb|ADD57725.1| SsrA-binding protein [Escherichia coli O55:H7 str. CB9615]
gi|291322061|gb|EFE61490.1| SsrA-binding protein [Escherichia coli B088]
gi|291426132|gb|EFE99164.1| SsrA-binding protein [Escherichia coli FVEC1412]
gi|291432079|gb|EFF05061.1| SsrA-binding protein [Escherichia coli B185]
gi|291468780|gb|EFF11271.1| SsrA-binding protein [Escherichia coli B354]
gi|294492336|gb|ADE91092.1| SsrA-binding protein [Escherichia coli IHE3034]
gi|298277000|gb|EFI18516.1| SsrA-binding protein [Escherichia coli FVEC1302]
gi|299879598|gb|EFI87809.1| SsrA-binding protein [Escherichia coli MS 196-1]
gi|300297799|gb|EFJ54184.1| SsrA-binding protein [Escherichia coli MS 185-1]
gi|300305678|gb|EFJ60198.1| SsrA-binding protein [Escherichia coli MS 200-1]
gi|300315840|gb|EFJ65624.1| SsrA-binding protein [Escherichia coli MS 175-1]
gi|300356308|gb|EFJ72178.1| SsrA-binding protein [Escherichia coli MS 198-1]
gi|300395550|gb|EFJ79088.1| SsrA-binding protein [Escherichia coli MS 69-1]
gi|300403046|gb|EFJ86584.1| SsrA-binding protein [Escherichia coli MS 84-1]
gi|300407900|gb|EFJ91438.1| SsrA-binding protein [Escherichia coli MS 45-1]
gi|300411883|gb|EFJ95193.1| SsrA-binding protein [Escherichia coli MS 115-1]
gi|300418285|gb|EFK01596.1| SsrA-binding protein [Escherichia coli MS 182-1]
gi|300451514|gb|EFK15134.1| SsrA-binding protein [Escherichia coli MS 116-1]
gi|300454282|gb|EFK17775.1| SsrA-binding protein [Escherichia coli MS 21-1]
gi|300461474|gb|EFK24967.1| SsrA-binding protein [Escherichia coli MS 187-1]
gi|300522340|gb|EFK43409.1| SsrA-binding protein [Escherichia coli MS 119-7]
gi|300527481|gb|EFK48543.1| SsrA-binding protein [Escherichia coli MS 107-1]
gi|300838989|gb|EFK66749.1| SsrA-binding protein [Escherichia coli MS 124-1]
gi|300846601|gb|EFK74361.1| SsrA-binding protein [Escherichia coli MS 78-1]
gi|301077582|gb|EFK92388.1| SsrA-binding protein [Escherichia coli MS 146-1]
gi|305854501|gb|EFM54939.1| SsrA-binding protein [Escherichia coli NC101]
gi|306905498|gb|EFN36032.1| SsrA-binding protein [Escherichia coli W]
gi|307625831|gb|ADN70135.1| SsrA-binding protein [Escherichia coli UM146]
gi|308122036|gb|EFO59298.1| SsrA-binding protein [Escherichia coli MS 145-7]
gi|308927533|gb|EFP73005.1| ssrA-binding protein [Shigella dysenteriae 1617]
gi|309702999|emb|CBJ02330.1| SsrA-binding protein [Escherichia coli ETEC H10407]
gi|310333079|gb|EFQ00293.1| ssrA-binding protein [Escherichia coli 1827-70]
gi|312289799|gb|EFR17688.1| ssrA-binding protein [Escherichia coli 2362-75]
gi|312947191|gb|ADR28018.1| SsrA-binding protein [Escherichia coli O83:H1 str. NRG 857C]
gi|313648298|gb|EFS12742.1| ssrA-binding protein [Shigella flexneri 2a str. 2457T]
gi|315061933|gb|ADT76260.1| trans-translation protein [Escherichia coli W]
gi|315137237|dbj|BAJ44396.1| SsrA-binding protein [Escherichia coli DH1]
gi|315252784|gb|EFU32752.1| SsrA-binding protein [Escherichia coli MS 85-1]
gi|315284839|gb|EFU44284.1| SsrA-binding protein [Escherichia coli MS 110-3]
gi|315290978|gb|EFU50343.1| SsrA-binding protein [Escherichia coli MS 153-1]
gi|315298661|gb|EFU57915.1| SsrA-binding protein [Escherichia coli MS 16-3]
gi|315615319|gb|EFU95954.1| ssrA-binding protein [Escherichia coli 3431]
gi|320177036|gb|EFW52057.1| tmRNA-binding protein SmpB [Shigella dysenteriae CDC 74-1112]
gi|320183101|gb|EFW57963.1| tmRNA-binding protein SmpB [Shigella flexneri CDC 796-83]
gi|320188953|gb|EFW63612.1| tmRNA-binding protein SmpB [Escherichia coli O157:H7 str. EC1212]
gi|320194782|gb|EFW69411.1| tmRNA-binding protein SmpB [Escherichia coli WV_060327]
gi|320198392|gb|EFW72994.1| tmRNA-binding protein SmpB [Escherichia coli EC4100B]
gi|320640802|gb|EFX10300.1| SsrA-binding protein [Escherichia coli O157:H7 str. G5101]
gi|320646147|gb|EFX15092.1| SsrA-binding protein [Escherichia coli O157:H- str. 493-89]
gi|320651444|gb|EFX19845.1| SsrA-binding protein [Escherichia coli O157:H- str. H 2687]
gi|320657048|gb|EFX24871.1| SsrA-binding protein [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320662712|gb|EFX30056.1| SsrA-binding protein [Escherichia coli O55:H7 str. USDA 5905]
gi|320667529|gb|EFX34453.1| SsrA-binding protein [Escherichia coli O157:H7 str. LSU-61]
gi|323156274|gb|EFZ42433.1| ssrA-binding protein [Escherichia coli EPECa14]
gi|323167744|gb|EFZ53439.1| ssrA-binding protein [Shigella sonnei 53G]
gi|323173063|gb|EFZ58694.1| ssrA-binding protein [Escherichia coli LT-68]
gi|323177254|gb|EFZ62842.1| ssrA-binding protein [Escherichia coli 1180]
gi|323184504|gb|EFZ69878.1| ssrA-binding protein [Escherichia coli 1357]
gi|323188389|gb|EFZ73678.1| ssrA-binding protein [Escherichia coli RN587/1]
gi|323377487|gb|ADX49755.1| SsrA-binding protein [Escherichia coli KO11]
gi|323935666|gb|EGB31983.1| SsrA-binding protein [Escherichia coli E1520]
gi|323946253|gb|EGB42286.1| SsrA-binding protein [Escherichia coli H120]
gi|323951182|gb|EGB47058.1| SsrA-binding protein [Escherichia coli H252]
gi|323957013|gb|EGB52739.1| SsrA-binding protein [Escherichia coli H263]
gi|323960522|gb|EGB56151.1| SsrA-binding protein [Escherichia coli H489]
gi|323971437|gb|EGB66673.1| SsrA-binding protein [Escherichia coli TA007]
gi|323978471|gb|EGB73554.1| SsrA-binding protein [Escherichia coli TW10509]
gi|324005805|gb|EGB75024.1| SsrA-binding protein [Escherichia coli MS 57-2]
gi|324012420|gb|EGB81639.1| SsrA-binding protein [Escherichia coli MS 60-1]
gi|324016606|gb|EGB85825.1| SsrA-binding protein [Escherichia coli MS 117-3]
gi|324111255|gb|EGC05237.1| SsrA-binding protein [Escherichia fergusonii B253]
gi|324120077|gb|EGC13953.1| SsrA-binding protein [Escherichia coli E1167]
gi|325496313|gb|EGC94172.1| SsrA-binding protein [Escherichia fergusonii ECD227]
gi|326344370|gb|EGD68128.1| tmRNA-binding protein SmpB [Escherichia coli O157:H7 str. 1125]
gi|326347739|gb|EGD71456.1| tmRNA-binding protein SmpB [Escherichia coli O157:H7 str. 1044]
gi|330912381|gb|EGH40891.1| tmRNA-binding protein SmpB [Escherichia coli AA86]
gi|331036807|gb|EGI09031.1| SsrA-binding protein [Escherichia coli H736]
gi|331042109|gb|EGI14251.1| SsrA-binding protein [Escherichia coli M605]
gi|331047458|gb|EGI19535.1| SsrA-binding protein [Escherichia coli M718]
gi|331053349|gb|EGI25378.1| SsrA-binding protein [Escherichia coli TA206]
gi|331058642|gb|EGI30620.1| SsrA-binding protein [Escherichia coli TA143]
gi|331063038|gb|EGI34951.1| SsrA-binding protein [Escherichia coli TA271]
gi|331068796|gb|EGI40189.1| SsrA-binding protein [Escherichia coli TA280]
gi|331073440|gb|EGI44761.1| SsrA-binding protein [Escherichia coli H591]
gi|331077890|gb|EGI49096.1| SsrA-binding protein [Escherichia coli H299]
gi|332089207|gb|EGI94314.1| ssrA-binding protein [Shigella dysenteriae 155-74]
gi|332103037|gb|EGJ06383.1| trans-translation protein [Shigella sp. D9]
Length = 160
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|75676118|ref|YP_318539.1| SsrA-binding protein [Nitrobacter winogradskyi Nb-255]
gi|123613241|sp|Q3SRA4|SSRP_NITWN RecName: Full=SsrA-binding protein
gi|74420988|gb|ABA05187.1| SsrA-binding protein [Nitrobacter winogradskyi Nb-255]
Length = 157
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 94/156 (60%), Positives = 122/156 (78%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +G KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E
Sbjct: 1 MADKGERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSIRNGKTTIAESYADSKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL NS IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINSNIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVDREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR
Sbjct: 121 AKLLLAIAKGKKLHDKRESEKKRDWGREKGRLLRAR 156
>gi|311278422|ref|YP_003940653.1| SsrA-binding protein [Enterobacter cloacae SCF1]
gi|308747617|gb|ADO47369.1| SsrA-binding protein [Enterobacter cloacae SCF1]
Length = 160
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGANFTPLAVASSHYVCDPTRTRKLLLNQRELDTLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKN 157
>gi|119490551|ref|ZP_01622993.1| SsrA-binding protein [Lyngbya sp. PCC 8106]
gi|119453879|gb|EAW35035.1| SsrA-binding protein [Lyngbya sp. PCC 8106]
Length = 155
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +K+++DNRKARY Y ++ +++AGI L GTEVKS+R +VN+ D YA N E
Sbjct: 1 MSKNDSGGRKIITDNRKARYLYELLETYQAGIELQGTEVKSIRAGRVNMQDGYALVRNRE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N +I Y + FNH PRR RKLLL ++EI++L V + G+TLVP K+YF GL
Sbjct: 61 AWLINVHISPYETSAYFNHEPRRTRKLLLHRKEINKLIGLVEQKGLTLVPTKMYFK-NGL 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++A+ +GKK +DKR+T KKRD RQ R ++++
Sbjct: 120 VKVEIAVGRGKKLHDKRDTMKKRDDQRQMERAMKQY 155
>gi|86739514|ref|YP_479914.1| SsrA-binding protein [Frankia sp. CcI3]
gi|123737756|sp|Q2JEV7|SSRP_FRASC RecName: Full=SsrA-binding protein
gi|86566376|gb|ABD10185.1| SsrA-binding protein [Frankia sp. CcI3]
Length = 159
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 63/150 (42%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+++++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL N
Sbjct: 5 TGRRLIAQNKRARHDYDILDTYEAGLVLRGTEVKALRAGRASLVDGFAQISDGEIWLHNV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY + NH PRR RK+LL + EI +L + G+TLVP+ +Y+ G AKI++A
Sbjct: 65 HIPEYTEGTWTNHAPRRKRKMLLHRAEIEKLVGKTQEGGLTLVPLSLYWKD-GRAKIEIA 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+G+K+YDKR +RD R+ R +
Sbjct: 124 LARGRKSYDKRHAIAERDAAREIGRAMGRR 153
>gi|217977032|ref|YP_002361179.1| SsrA-binding protein [Methylocella silvestris BL2]
gi|254778370|sp|B8ESC7|SSRP_METSB RecName: Full=SsrA-binding protein
gi|217502408|gb|ACK49817.1| SsrA-binding protein [Methylocella silvestris BL2]
Length = 158
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 91/157 (57%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND- 61
+ + KV ++NR+ARYNY I +FEAG++LTGTEVK+LR K I++SYA+ E
Sbjct: 1 MAPKKESLYKVAAENRRARYNYEIGETFEAGLMLTGTEVKALRTGKATIAESYASVERSG 60
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E++L N+ IPEYLQANRFNH P+R RKLLL EI +L R+GMT+VP+KIYFN +G
Sbjct: 61 ELFLINATIPEYLQANRFNHEPKRPRKLLLHASEIVKLAQGTEREGMTIVPLKIYFNDRG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AKI++ALA+GK+ +DKRETEKKRDWDR+K R++RE
Sbjct: 121 RAKIEIALARGKQLHDKRETEKKRDWDREKGRLMREK 157
>gi|114570132|ref|YP_756812.1| SsrA-binding protein [Maricaulis maris MCS10]
gi|122315949|sp|Q0APB3|SSRP_MARMM RecName: Full=SsrA-binding protein
gi|114340594|gb|ABI65874.1| SsrA-binding protein [Maricaulis maris MCS10]
Length = 156
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 110/158 (69%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS P V+ NR+AR++Y I +FEAG++L G+EVKSLR + NI++SY + E
Sbjct: 1 MSKPKSETAP---VAVNRRARFDYEIEETFEAGLMLMGSEVKSLREGRANIAESYVSAER 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+ +WL N+ IP Y ANRFNH P+R+RKLLL +EI RL A + G T+V +++YFN +
Sbjct: 58 EGLWLINADIPPYGPANRFNHEPKRHRKLLLKAKEIARLTGASTQQGRTIVALRLYFNGR 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GLAK+ + LA GKK DKR+T K R+W++QK R+++ +
Sbjct: 118 GLAKLQIGLATGKKTVDKRQTIKDREWNKQKSRLMKNY 155
>gi|86137154|ref|ZP_01055732.1| SsrA-binding protein [Roseobacter sp. MED193]
gi|85826478|gb|EAQ46675.1| SsrA-binding protein [Roseobacter sp. MED193]
Length = 158
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +++ +P KV+++NR+AR++Y I E GI+L G+EVK+LR NI++SYA E+
Sbjct: 1 MA-QTKSDPNYKVIAENRRARFDYAIEDDVECGIMLEGSEVKALREGGTNIAESYAAVED 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSY+P Y QA F H RR RKLL+S++++ ++ A +R GMTLVP+ +YFN K
Sbjct: 60 GELWLVNSYVPPYSQAKMFKHEERRRRKLLVSRKQLSDMWNATQRKGMTLVPIVMYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GKK +DKRE KRDW RQK R++++H
Sbjct: 120 GRAKLKIGIAKGKKAHDKREAAAKRDWSRQKSRLMKDH 157
>gi|283786239|ref|YP_003366104.1| SsrA small binding protein B [Citrobacter rodentium ICC168]
gi|282949693|emb|CBG89312.1| SsrA small binding protein B [Citrobacter rodentium ICC168]
Length = 160
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157
>gi|323159140|gb|EFZ45133.1| ssrA-binding protein [Escherichia coli E128010]
Length = 160
Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY N
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRN 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|227888186|ref|ZP_04005991.1| SsrA-binding protein [Escherichia coli 83972]
gi|227834826|gb|EEJ45292.1| SsrA-binding protein [Escherichia coli 83972]
gi|307554632|gb|ADN47407.1| SsrA-binding protein [Escherichia coli ABU 83972]
Length = 160
Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKERIMKN 157
>gi|78485753|ref|YP_391678.1| SsrA-binding protein [Thiomicrospira crunogena XCL-2]
gi|123555339|sp|Q31FR9|SSRP_THICR RecName: Full=SsrA-binding protein
gi|78364039|gb|ABB42004.1| SsrA-binding protein [Thiomicrospira crunogena XCL-2]
Length = 158
Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 104/159 (65%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + N P ++ N+KAR++Y I +FEAG+ L G EVKSLR KV I++SY +N
Sbjct: 1 MAKKKKQNNP-NSIAQNKKARFDYFIEETFEAGLALEGWEVKSLRQGKVQINESYILLKN 59
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E WL + P + NH P R RKLL+ +REI RL V + G T+VP+ ++++
Sbjct: 60 NEAWLFGALITPLITASTHSNHDPLRLRKLLMHRREIDRLMGLVDQKGFTVVPLGLHWS- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG KI + LA+GKK +DKR T+K+RDW+R K RI++ H
Sbjct: 119 KGKVKISIGLAKGKKLHDKRATQKERDWNRDKQRIMKYH 157
>gi|302383622|ref|YP_003819445.1| SsrA-binding protein [Brevundimonas subvibrioides ATCC 15264]
gi|302194250|gb|ADL01822.1| SsrA-binding protein [Brevundimonas subvibrioides ATCC 15264]
Length = 168
Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 112/147 (76%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV+++NR+AR++Y + + EAGI+L GTE+K+LR+ + NI++SYA E EI L N+ IP
Sbjct: 21 KVIAENRRARFDYFLEDNIEAGIMLLGTEIKALRMGRANIAESYAAVEGREIVLINADIP 80
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y+QANRFNH PRR RKLLL +++I RL AV++DG T++P+K+Y N G AK+++ALA+
Sbjct: 81 PYVQANRFNHEPRRPRKLLLHRKQIDRLIGAVQKDGQTIIPLKLYLNDDGKAKLEIALAK 140
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRE RDW R K R+LR+
Sbjct: 141 GKKLHDKREASADRDWARDKARLLRDR 167
>gi|254389758|ref|ZP_05004982.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064]
gi|294812906|ref|ZP_06771549.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064]
gi|326441318|ref|ZP_08216052.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064]
gi|197703469|gb|EDY49281.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064]
gi|294325505|gb|EFG07148.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064]
Length = 172
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
+ +K+V+ N+KAR++YHI+ ++E G+VLTGTEVKSLR + ++ D + +
Sbjct: 8 AKSKAKEQGRKLVAQNKKARHDYHIIDTYECGMVLTGTEVKSLRQGRASLVDGFIQIDGH 67
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL N +IPEY Q NH RR RKLLL + EI +L A ++ G T+VP+ +YF G
Sbjct: 68 EAWLHNVHIPEYSQGTWTNHAARRKRKLLLHRAEIDKLEAKLQDAGHTIVPLSLYFT-NG 126
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
AK+++ALA+GKK YDKR+T ++R R+ R +
Sbjct: 127 RAKVEIALAKGKKEYDKRQTLRERQDRREADRAM 160
>gi|154247755|ref|YP_001418713.1| SsrA-binding protein [Xanthobacter autotrophicus Py2]
gi|238686735|sp|A7IM13|SSRP_XANP2 RecName: Full=SsrA-binding protein
gi|154161840|gb|ABS69056.1| SsrA-binding protein [Xanthobacter autotrophicus Py2]
Length = 158
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 91/158 (57%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + P+K+ +DNR+AR+++ I +FEAG++LTGTEVKSLR K I +SYA +
Sbjct: 1 MSSK-KTEAPRKIAADNRRARFDFEIGETFEAGVMLTGTEVKSLRTGKATIGESYAAQKA 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N+YIPEYL+ANRFNH RR RKLLL KR+I +L AV R+GMT+V +KIYFN +
Sbjct: 60 GEMWLYNAYIPEYLEANRFNHETRRPRKLLLHKRQIAKLGHAVEREGMTVVALKIYFNDQ 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++LALA+GKK +DKRE K+RDW R K R++R+
Sbjct: 120 GRAKVELALAKGKKAHDKREASKERDWARDKARLMRDR 157
>gi|92117783|ref|YP_577512.1| SsrA-binding protein [Nitrobacter hamburgensis X14]
gi|122417657|sp|Q1QL45|SSRP_NITHX RecName: Full=SsrA-binding protein
gi|91800677|gb|ABE63052.1| SsrA-binding protein [Nitrobacter hamburgensis X14]
Length = 157
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 92/156 (58%), Positives = 121/156 (77%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E
Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSVRNGKTTIAESYADSKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR
Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRAR 156
>gi|156932838|ref|YP_001436754.1| hypothetical protein ESA_00635 [Cronobacter sakazakii ATCC BAA-894]
gi|166223217|sp|A7MHX6|SSRP_ENTS8 RecName: Full=SsrA-binding protein
gi|156531092|gb|ABU75918.1| hypothetical protein ESA_00635 [Cronobacter sakazakii ATCC BAA-894]
Length = 160
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P R RKLLL++RE+ LY + RDG T+V + +Y+
Sbjct: 61 GEAYLFGANFQPLNVASTHVVCDPTRTRKLLLNQRELDNLYGRINRDGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157
>gi|148256041|ref|YP_001240626.1| SsrA-binding protein [Bradyrhizobium sp. BTAi1]
gi|166222363|sp|A5EKM6|SSRP_BRASB RecName: Full=SsrA-binding protein
gi|146408214|gb|ABQ36720.1| SsrA-binding protein [Bradyrhizobium sp. BTAi1]
Length = 157
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 90/156 (57%), Positives = 119/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P V ++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA + E
Sbjct: 1 MADKKEPKITVAAENRKARFNYAIEDTIEAGIALTGTEVKSIRSGKSTIAESYADSRDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVEREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR
Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRAR 156
>gi|146341386|ref|YP_001206434.1| SsrA-binding protein [Bradyrhizobium sp. ORS278]
gi|166222364|sp|A4YWD7|SSRP_BRASO RecName: Full=SsrA-binding protein
gi|146194192|emb|CAL78213.1| trans-translation protein, binds tmRNA and tRNA (SsrA-binding
protein) [Bradyrhizobium sp. ORS278]
Length = 157
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 90/156 (57%), Positives = 120/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ P V ++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA + E
Sbjct: 1 MANKNEPKITVAAENRKARFNYAIEDTIEAGIALTGTEVKSVRGGKSTIAESYADSRDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVEREGMTLIPLKLYFNERGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR
Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRAR 156
>gi|169630554|ref|YP_001704203.1| SsrA-binding protein [Mycobacterium abscessus ATCC 19977]
gi|238688782|sp|B1MEU3|SSRP_MYCA9 RecName: Full=SsrA-binding protein
gi|169242521|emb|CAM63549.1| SsrA-binding protein [Mycobacterium abscessus]
Length = 159
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +KV++ NRKAR+NY I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E
Sbjct: 1 MSKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL +IP+Y NH P RNRKLLL + +I L R +TLVP+ +YF G
Sbjct: 61 VWLRGVHIPQYDHGTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLD-GK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK+ +DKR+ KRD R+ R L
Sbjct: 120 VKVELALARGKQAHDKRQDIAKRDASREITRELGRR 155
>gi|296268780|ref|YP_003651412.1| SsrA-binding protein [Thermobispora bispora DSM 43833]
gi|296091567|gb|ADG87519.1| SsrA-binding protein [Thermobispora bispora DSM 43833]
Length = 160
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K+++ NR+A+++Y I ++EAGIVLTGTEVKSLR + N+++ YAT ++ E+WL N
Sbjct: 5 TGRKLIAQNRRAKHDYFIEDTYEAGIVLTGTEVKSLRAGRANLTEGYATVKDGEVWLINV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH PRR RKLLL ++EI +L A ++ G+TLVP+ +YF G AK+++
Sbjct: 65 HIPEYSHGTWTNHAPRRTRKLLLHRKEIAKLEAVLKERGLTLVPLSLYFKD-GKAKVEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+GKK+YDKR+ ++ R+ R +
Sbjct: 124 VARGKKSYDKRQALLEKQAKREMARAMSN 152
>gi|332162713|ref|YP_004299290.1| SsrA-binding protein [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325666943|gb|ADZ43587.1| SsrA-binding protein [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330859465|emb|CBX69809.1| ssrA-binding protein [Yersinia enterocolitica W22703]
Length = 164
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWKLDKARIMKHAN 163
>gi|123441340|ref|YP_001005327.1| SsrA-binding protein [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|166223474|sp|A1JKI0|SSRP_YERE8 RecName: Full=SsrA-binding protein
gi|122088301|emb|CAL11092.1| SsrA-binding protein (small protein B) [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|318606822|emb|CBY28320.1| tmrna-binding protein SmpB [Yersinia enterocolitica subsp.
palearctica Y11]
Length = 160
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 61 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 120 NAWVKVKIGVAKGKKDHDKRDDIKDREWKLDKARIMKHAN 159
>gi|15616114|ref|NP_244419.1| SsrA-binding protein [Bacillus halodurans C-125]
gi|10176176|dbj|BAB07271.1| small protein B [Bacillus halodurans C-125]
Length = 157
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ G KV++ N+KAR++Y I +FEAG+VL GTE+KS+R + N+ DS+A N E
Sbjct: 1 MNVMGETEGKVIAQNKKARHDYFIEETFEAGMVLQGTEIKSIRAGRANLKDSFARVSNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N +I EY Q NR+NH P R RKLLL K++I L ++ G T+VP+KIY G
Sbjct: 61 VYLHNCHISEYEQGNRYNHEPTRARKLLLHKKQIDTLIGQTQQKGYTIVPLKIYIK-NGF 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK + L +GKK +DKRET ++RD R+ R L+E N
Sbjct: 120 AKCLIGLGKGKKTFDKRETLRRRDAKREVERALKEKN 156
>gi|242240626|ref|YP_002988807.1| SsrA-binding protein [Dickeya dadantii Ech703]
gi|242132683|gb|ACS86985.1| SsrA-binding protein [Dickeya dadantii Ech703]
Length = 160
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAYKPGSATIALNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVMLRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P ++ ++ P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATFTPLHVASSHVICDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR+ K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKEHDKRDDIKEREWKLDKARIMKN 157
>gi|148543631|ref|YP_001271001.1| SsrA-binding protein [Lactobacillus reuteri DSM 20016]
gi|184153045|ref|YP_001841386.1| SsrA-binding protein [Lactobacillus reuteri JCM 1112]
gi|194468189|ref|ZP_03074175.1| SsrA-binding protein [Lactobacillus reuteri 100-23]
gi|227363398|ref|ZP_03847524.1| SsrA-binding protein [Lactobacillus reuteri MM2-3]
gi|227545084|ref|ZP_03975133.1| SsrA-binding protein [Lactobacillus reuteri CF48-3A]
gi|300909246|ref|ZP_07126707.1| SsrA-binding protein [Lactobacillus reuteri SD2112]
gi|325681994|ref|ZP_08161512.1| SsrA-binding protein [Lactobacillus reuteri MM4-1A]
gi|187611483|sp|A5VIJ0|SSRP_LACRD RecName: Full=SsrA-binding protein
gi|229559867|sp|B2G624|SSRP_LACRJ RecName: Full=SsrA-binding protein
gi|148530665|gb|ABQ82664.1| SsrA-binding protein [Lactobacillus reuteri DSM 20016]
gi|183224389|dbj|BAG24906.1| SsrA-binding protein [Lactobacillus reuteri JCM 1112]
gi|194453042|gb|EDX41940.1| SsrA-binding protein [Lactobacillus reuteri 100-23]
gi|227071587|gb|EEI09884.1| SsrA-binding protein [Lactobacillus reuteri MM2-3]
gi|227184933|gb|EEI65004.1| SsrA-binding protein [Lactobacillus reuteri CF48-3A]
gi|300893111|gb|EFK86470.1| SsrA-binding protein [Lactobacillus reuteri SD2112]
gi|324978638|gb|EGC15587.1| SsrA-binding protein [Lactobacillus reuteri MM4-1A]
Length = 157
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS +++ N+KAR++Y + + EAG+VLTGTE+KS+R +VN+ D +A N
Sbjct: 1 MAKKSHQENNDNLIAQNKKARHDYFVTDTVEAGLVLTGTEIKSVRAHRVNLKDGFAQVRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N +I EY FN P RNRKLLL K+EI++L A++ G+TL+P+K+Y
Sbjct: 61 GEAWLMNVHISEYDNGTYFNQDPLRNRKLLLHKKEINKLVGALQDKGVTLIPLKMYIK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L LA+GK YDKRE K+R+ +R+ R+++ +
Sbjct: 120 GYAKVLLGLAKGKHQYDKREAIKRREQNREIERVMKHY 157
>gi|261342050|ref|ZP_05969908.1| SsrA-binding protein [Enterobacter cancerogenus ATCC 35316]
gi|288315706|gb|EFC54644.1| SsrA-binding protein [Enterobacter cancerogenus ATCC 35316]
Length = 160
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ + P R RKLLL+KRE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAFLFGANFTPLTVASSHYVCDPTRTRKLLLNKRELESLYGRINREGFTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRTDLKEREWQLDKARIMKN 157
>gi|268593272|ref|ZP_06127493.1| SsrA-binding protein [Providencia rettgeri DSM 1131]
gi|291311168|gb|EFE51621.1| SsrA-binding protein [Providencia rettgeri DSM 1131]
Length = 160
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY +
Sbjct: 1 MTKKKPYKPGSATIAMNKRARHEYSIEEEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ P R+RKLLL++RE+ LY V R+G T++ + +Y+
Sbjct: 61 GEAYLFGANFTPLTVASSHVVCDPTRSRKLLLNQRELDTLYGKVNREGYTVIALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR K+R+W K RI++ N
Sbjct: 120 NAWCKVKIGVARGKKSHDKRSDIKEREWQLDKARIMKHSN 159
>gi|257063631|ref|YP_003143303.1| SsrA-binding protein [Slackia heliotrinireducens DSM 20476]
gi|256791284|gb|ACV21954.1| SsrA-binding protein [Slackia heliotrinireducens DSM 20476]
Length = 155
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 68/149 (45%), Positives = 98/149 (65%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK ++ NR+A ++Y IV +FEAGIVLTGTEV+SLR + ++D YA + E+WL +I
Sbjct: 5 KKQIAKNRRALHDYEIVETFEAGIVLTGTEVRSLRENNCQLTDCYALVRHGEVWLHGLHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + FN P R RKLLL +R+I L + + G+ LVP+ IYF+ GL K++LA+A
Sbjct: 65 APYSNGSYFNVDPDRKRKLLLHRRQIRYLDSKAKEKGLALVPLNIYFSPNGLVKVELAVA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKR + +RD R+ R L+ N
Sbjct: 125 RGKKLHDKRASMAERDTKREIERALKSRN 153
>gi|312870273|ref|ZP_07730401.1| SsrA-binding protein [Lactobacillus oris PB013-T2-3]
gi|311094157|gb|EFQ52473.1| SsrA-binding protein [Lactobacillus oris PB013-T2-3]
Length = 157
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS+ +++ N+KAR++Y + ++EAG+VLTGTE+KS+R +VN+ D +A +N
Sbjct: 1 MAKKSQQKNNDNLIAQNKKARHDYFVTDTYEAGLVLTGTEIKSVRAHRVNLKDGFAQIKN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N +I EY N FN P RNRKLLL K+E+HRL ++ G+TL+P+K+Y
Sbjct: 61 GEAWLMNVHISEYDNGNIFNQDPLRNRKLLLHKKELHRLTGVLQDKGVTLIPLKMYIK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L +A+GK YDKRE K+R+ +R+ R+++ +
Sbjct: 120 GYAKVLLGVAKGKHQYDKREAIKRREQNREIERVMKHY 157
>gi|256823232|ref|YP_003147195.1| SsrA-binding protein [Kangiella koreensis DSM 16069]
gi|256796771|gb|ACV27427.1| SsrA-binding protein [Kangiella koreensis DSM 16069]
Length = 157
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +G P ++ N++AR++Y I ++EAG+VL G EVKS+R KVN+++SY ++
Sbjct: 1 MAKK-KGKPSGNTIALNKRARHDYFIEDTYEAGLVLQGWEVKSIRAGKVNLAESYVLLKD 59
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L +I + P R RKLLL RE+ +L+ V + G T+V + +Y+
Sbjct: 60 GEAFLFGCHITPLISASTHVVADPTRTRKLLLHDRELAQLFRGVEQQGYTVVALAMYWKQ 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ A+GKK +DKR TEK+R+W++ K RI++ H
Sbjct: 120 H-RVKLEIGCAKGKKLHDKRATEKEREWNKSKERIMKRH 157
>gi|238750406|ref|ZP_04611907.1| hypothetical protein yrohd0001_21170 [Yersinia rohdei ATCC 43380]
gi|238711337|gb|EEQ03554.1| hypothetical protein yrohd0001_21170 [Yersinia rohdei ATCC 43380]
Length = 164
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQVDKARIMKHAN 163
>gi|169830467|ref|YP_001716449.1| SsrA-binding protein [Candidatus Desulforudis audaxviator MP104C]
gi|254778356|sp|B1I1B6|SSRP_DESAP RecName: Full=SsrA-binding protein
gi|169637311|gb|ACA58817.1| SsrA-binding protein [Candidatus Desulforudis audaxviator MP104C]
Length = 153
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P+K V NRKAR+ Y I+ ++EAG+VL GTEVKSLR K N+ DS+A +N E+WL N +
Sbjct: 5 PEKTVCQNRKARHEYFILETYEAGLVLKGTEVKSLRAGKANLKDSFARIQNGELWLENMH 64
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ Y Q NRFNH P+R RKLL+ K EI RL+ R G+ L+P+++YF G AK++LAL
Sbjct: 65 VSPYEQGNRFNHEPKRPRKLLMHKSEIMRLWGKTREKGLALIPLRVYFKD-GRAKVELAL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156
A+GKK YDKR+ KR+ +R+ R R
Sbjct: 124 AKGKKLYDKRDDIAKREAEREIARAAR 150
>gi|85703801|ref|ZP_01034904.1| SsrA-binding protein [Roseovarius sp. 217]
gi|85671121|gb|EAQ25979.1| SsrA-binding protein [Roseovarius sp. 217]
Length = 158
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 87/158 (55%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + NP KV+++NR+ARY++ I E GI+L G+EVKSLRV+ NI++SYA EN
Sbjct: 1 MA-KDKENPNYKVIAENRRARYDFAIEDDLECGIILEGSEVKSLRVNSANIAESYAMVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H +R RKLL+SK+E+ RL++ +R GMTLVP+ +YFN +
Sbjct: 60 GELWLVNSYIAPYEQAKTFGHDEKRRRKLLVSKKEMSRLWSDTQRKGMTLVPLVLYFNHR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AK+ + +A+GKKN+DKRETE KRDW RQK R+L++H
Sbjct: 120 GIAKLKIGIAKGKKNHDKRETEAKRDWARQKQRLLKDH 157
>gi|212710686|ref|ZP_03318814.1| hypothetical protein PROVALCAL_01752 [Providencia alcalifaciens DSM
30120]
gi|212686767|gb|EEB46295.1| hypothetical protein PROVALCAL_01752 [Providencia alcalifaciens DSM
30120]
Length = 160
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY +
Sbjct: 1 MTKKKPYKPGSATIAMNKRARHEYSIEEEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ P R+RKLLL++RE+ LY V R+G T++ + +Y+
Sbjct: 61 GEAYLFGANFTPLTVASSHVVCDPTRSRKLLLNQRELDTLYGRVNREGYTVIALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK +DKR K R+W K RI++ N
Sbjct: 120 NAWCKVKIGVARGKKAHDKRSDIKDREWQLDKARIMKHSN 159
>gi|317498437|ref|ZP_07956732.1| SsrA-binding protein [Lachnospiraceae bacterium 5_1_63FAA]
gi|291560954|emb|CBL39754.1| SsrA-binding protein [butyrate-producing bacterium SSC/2]
gi|316894331|gb|EFV16518.1| SsrA-binding protein [Lachnospiraceae bacterium 5_1_63FAA]
Length = 158
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ K++++N+KAR++Y + SFEAGIVL GTEVKSLR +I +S+ +N E
Sbjct: 1 MSKAKTDGIKLIANNKKARHDYFVEDSFEAGIVLHGTEVKSLRQGHCSIKESFVDIDNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+++ +I Y + N FN P R RKLLL K EI ++ + + G TL+P+K+YF+ L
Sbjct: 61 VFIHQMHISPYEKGNIFNKDPLRTRKLLLHKSEISKMIGQINQKGYTLIPLKVYFSGS-L 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + L +GKK YDKR+ KRD R+ R + N
Sbjct: 120 VKVQIGLCKGKKLYDKRQDISKRDQLREAQRDFKVRN 156
>gi|197285761|ref|YP_002151633.1| SsrA-binding protein [Proteus mirabilis HI4320]
gi|227356275|ref|ZP_03840663.1| SsrA-binding protein (small protein B) [Proteus mirabilis ATCC
29906]
gi|238693203|sp|B4F065|SSRP_PROMH RecName: Full=SsrA-binding protein
gi|194683248|emb|CAR43952.1| SsrA-binding protein (small protein B) [Proteus mirabilis HI4320]
gi|227163385|gb|EEI48306.1| SsrA-binding protein (small protein B) [Proteus mirabilis ATCC
29906]
Length = 160
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKSHKPGSATIALNKRARHEYFIEDEIEAGLSLQGWEVKSLRAGKANISDSYVIMRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL +RE+ LY + RDG T+V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASTHVVCDPTRTRKLLLKQRELANLYGQINRDGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + +A+GKK++DKR+T K R+W K RI++ N
Sbjct: 120 NAWCKIKIGVAKGKKDHDKRDTIKDREWKLDKARIMKNAN 159
>gi|260598998|ref|YP_003211569.1| SsrA-binding protein [Cronobacter turicensis z3032]
gi|260218175|emb|CBA33022.1| SsrA-binding protein [Cronobacter turicensis z3032]
Length = 160
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAYLFGANFQPLNVASTHVVCDPTRTRKLLLNQRELDSLYGRMNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157
>gi|56698617|ref|YP_168994.1| SsrA-binding protein [Ruegeria pomeroyi DSS-3]
gi|67461890|sp|Q5LLW5|SSRP_SILPO RecName: Full=SsrA-binding protein
gi|56680354|gb|AAV97020.1| SsrA-binding protein [Ruegeria pomeroyi DSS-3]
Length = 158
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P KV+++NR+AR++Y I E GI+L G+EVK+LR NI+DSYA EN
Sbjct: 1 MAKKI-SDPNYKVIAENRRARFDYAIESDLECGIMLEGSEVKALRGGGSNIADSYAAVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N+YIP Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN K
Sbjct: 60 GELWLVNAYIPPYEQAKMFKHEERRRRKLLVSRKELANLWNATQRKGMTLVPLVLYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AK+ L +A+GKK +DKRETE KRDW+RQK R+L+++
Sbjct: 120 GIAKMKLGIAKGKKIHDKRETEAKRDWNRQKQRLLKDN 157
>gi|271499337|ref|YP_003332362.1| SsrA-binding protein [Dickeya dadantii Ech586]
gi|270342892|gb|ACZ75657.1| SsrA-binding protein [Dickeya dadantii Ech586]
Length = 160
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEIEAGLALQGWEVKSLRAGKANISDSYVLMRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P + ++ P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATFTPLHGASSHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+K+ + +A+GKK +DKR+ K+R+W K RI++
Sbjct: 120 NAWSKVKIGVAKGKKEHDKRDDIKEREWKLDKARIMKN 157
>gi|238796717|ref|ZP_04640223.1| hypothetical protein ymoll0001_29340 [Yersinia mollaretii ATCC
43969]
gi|238719448|gb|EEQ11258.1| hypothetical protein ymoll0001_29340 [Yersinia mollaretii ATCC
43969]
Length = 164
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQVDKARIMKHAN 163
>gi|170748309|ref|YP_001754569.1| SsrA-binding protein [Methylobacterium radiotolerans JCM 2831]
gi|238688763|sp|B1LTE0|SSRP_METRJ RecName: Full=SsrA-binding protein
gi|170654831|gb|ACB23886.1| SsrA-binding protein [Methylobacterium radiotolerans JCM 2831]
Length = 157
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 113/156 (72%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P +++V+DNR ARY+Y I + EAGI LTGTEVKSLR K I ++YA +
Sbjct: 1 MAPKPEPSRRIVADNRAARYHYTIEDTLEAGIALTGTEVKSLRGGKATIGEAYAGPSGTD 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+ L N+YIPEYL+ANRFNH +R R+LLL +R+I++L A +R G T+VP+KIYFN KG
Sbjct: 61 LMLFNAYIPEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVVPLKIYFNDKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++L L +GK+ +DKRE K+RDW R + R++R+
Sbjct: 121 AKVELGLGKGKQAHDKREAVKERDWQRDRARLMRDR 156
>gi|187611500|sp|A4WDI4|SSRP_ENT38 RecName: Full=SsrA-binding protein
Length = 160
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKVHKPGSATIALNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVILID 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ + P R RKLLL++RE+ L+ + R+G T+V + +Y+
Sbjct: 61 GEAFLFGANFTPLAVASSHYVCDPIRTRKLLLNQRELESLFGRINREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKDREWQVDKARIMKH 157
>gi|329889561|ref|ZP_08267904.1| ssrA-binding protein [Brevundimonas diminuta ATCC 11568]
gi|328844862|gb|EGF94426.1| ssrA-binding protein [Brevundimonas diminuta ATCC 11568]
Length = 156
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 110/150 (73%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P +K +++NR+AR++Y + EAGI L GTE+K+LR + NI++SY + E E+ L N+
Sbjct: 6 PKQKTIAENRRARFDYFLEDHIEAGIQLLGTEIKALRDGRANIAESYVSPEGREMVLINA 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
IP Y ANRFNH PRR+RKLLL +++I +L AV+RDG T+VP+++Y N G AK+++A
Sbjct: 66 DIPPYKMANRFNHEPRRHRKLLLHRKQIDKLIGAVQRDGRTIVPVRLYLNEAGKAKLEIA 125
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK +DKRE +RDW R K R+LR+
Sbjct: 126 LAKGKKLHDKREASAERDWQRDKARLLRDK 155
>gi|307129648|ref|YP_003881664.1| trans-translation protein [Dickeya dadantii 3937]
gi|306527177|gb|ADM97107.1| trans-translation protein [Dickeya dadantii 3937]
Length = 160
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEIEAGLALQGWEVKSLRAGKANISDSYVLMRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P + ++ P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATFTPLHGASSHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR+ K+R+W K RI++
Sbjct: 120 NAWCKVKVGVAKGKKEHDKRDDIKEREWKLDKARIMKN 157
>gi|260576959|ref|ZP_05844940.1| SsrA-binding protein [Rhodobacter sp. SW2]
gi|259020801|gb|EEW24116.1| SsrA-binding protein [Rhodobacter sp. SW2]
Length = 182
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 81/156 (51%), Positives = 117/156 (75%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P K++++NR+ARY++ I EAGI+L G+EVKSLR+ NI++SYA+ E E
Sbjct: 26 MAEKSDPNSKLIAENRRARYDFAIESDIEAGIMLLGSEVKSLRLGGSNIAESYASVEGGE 85
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N YI Y++A F H RR RKLL+SK+E+ RL+ A R+GMT+VP+K+YFN +G+
Sbjct: 86 LWLINGYIAPYVRAKTFGHEERRRRKLLVSKKELVRLWNATAREGMTIVPLKMYFNDRGI 145
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KI L +A+GKKN DKR TE KRDWDRQK R+++++
Sbjct: 146 VKIKLGIAKGKKNQDKRATEAKRDWDRQKARLMKQN 181
>gi|300114421|ref|YP_003760996.1| SsrA-binding protein [Nitrosococcus watsonii C-113]
gi|299540358|gb|ADJ28675.1| SsrA-binding protein [Nitrosococcus watsonii C-113]
Length = 160
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
S K P +++ NRKAR++Y I +EAG+VL G EVKSLR +V +++ Y +
Sbjct: 4 SKKKPSGNPSNIIALNRKARHDYFIEERYEAGLVLEGWEVKSLRAGRVQLNEGYCLLKGG 63
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL ++ + + P R RKLLL +E+ +L AV R G L+P+ +Y+ +
Sbjct: 64 EVWLFGVHLSPLNTVSTHIHPDPLRTRKLLLHAKELRKLIGAVERKGYALIPLTLYWK-R 122
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++ALA+GK+ YDKR TEK+++W RQK R+L+ H
Sbjct: 123 GRVKLEIALAKGKQKYDKRATEKEKEWTRQKERLLKVH 160
>gi|3211758|gb|AAC23745.1| VacB homolog [Streptococcus pneumoniae]
Length = 441
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|156744263|ref|YP_001434392.1| SsrA-binding protein [Roseiflexus castenholzii DSM 13941]
gi|189046841|sp|A7NS28|SSRP_ROSCS RecName: Full=SsrA-binding protein
gi|156235591|gb|ABU60374.1| SsrA-binding protein [Roseiflexus castenholzii DSM 13941]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+RGN ++VV+DNRKAR++Y I ++EAG+VLTG+E+KS+R +VN+ Y N E W
Sbjct: 2 ARGNGIERVVADNRKARHDYFIEETYEAGVVLTGSEIKSIRAGQVNLRGGYVRIVNGEAW 61
Query: 65 LTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L + +I Y Q+ FNH P R RKLLL +REI R+ V R G TLVP+++Y A
Sbjct: 62 LYDVHIAPYEQSGKYFNHEPTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGS-RA 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ LA+GKK YDKRE +R+ R R L+E
Sbjct: 121 KVEIGLARGKKLYDKREDIARREARRTIDRALKER 155
>gi|227113537|ref|ZP_03827193.1| SsrA-binding protein [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227328440|ref|ZP_03832464.1| SsrA-binding protein [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 160
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K N+SDSY TF N
Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANLSDSYVTFMN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R RKLLL+KRE+ L+ V RDG T+V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKRELDSLFGRVSRDGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+K+ + +A+GKK++DKR+ K+R+W K RI++ N
Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKLDKARIMKNAN 159
>gi|238784167|ref|ZP_04628180.1| hypothetical protein yberc0001_30040 [Yersinia bercovieri ATCC
43970]
gi|238714876|gb|EEQ06875.1| hypothetical protein yberc0001_30040 [Yersinia bercovieri ATCC
43970]
Length = 164
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSMYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQVDKARIMKHAN 163
>gi|261345463|ref|ZP_05973107.1| SsrA-binding protein [Providencia rustigianii DSM 4541]
gi|282566510|gb|EFB72045.1| SsrA-binding protein [Providencia rustigianii DSM 4541]
Length = 160
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY +
Sbjct: 1 MTKKKPYKPGSATIAMNKRARHEYSIEEEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ P R+RKLLL++RE+ LY V R+G T++ + +Y+
Sbjct: 61 GEAYLFGANFTPLTVASSHVVCDPTRSRKLLLNQRELDTLYGKVNREGYTVIALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK +DKR K R+W K RI++ N
Sbjct: 120 NAWCKVKIGVAKGKKAHDKRSDIKDREWQLDKARIMKHSN 159
>gi|22096179|sp|Q9K721|SSRP_BACHD RecName: Full=SsrA-binding protein
Length = 154
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/148 (48%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y I +FEAG+VL GTE+KS+R + N+ DS+A N E++L N +I
Sbjct: 7 KVIAQNKKARHDYFIEETFEAGMVLQGTEIKSIRAGRANLKDSFARVSNGEVYLHNCHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY Q NR+NH P R RKLLL K++I L ++ G T+VP+KIY G AK + L +
Sbjct: 67 EYEQGNRYNHEPTRARKLLLHKKQIDTLIGQTQQKGYTIVPLKIYIK-NGFAKCLIGLGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK +DKRET ++RD R+ R L+E N
Sbjct: 126 GKKTFDKRETLRRRDAKREVERALKEKN 153
>gi|292900233|ref|YP_003539602.1| SsrA-binding protein [Erwinia amylovora ATCC 49946]
gi|291200081|emb|CBJ47207.1| SsrA-binding protein [Erwinia amylovora ATCC 49946]
Length = 160
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + P + ++ P R+RKLLL +RE+ L RDG T+V + +Y+
Sbjct: 61 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLIGKANRDGYTIVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + LA+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWAKLKIGLAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159
>gi|323144051|ref|ZP_08078695.1| SsrA-binding protein [Succinatimonas hippei YIT 12066]
gi|322416164|gb|EFY06854.1| SsrA-binding protein [Succinatimonas hippei YIT 12066]
Length = 159
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 99/159 (62%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + V++ NR+A ++Y I EAG+ L G EVKSLR K NIS++Y T ++
Sbjct: 1 MAGKKKHKQGDNVIAVNRRATHDYFIEDRIEAGLSLQGWEVKSLRAGKANISEAYVTIKD 60
Query: 61 DEIWLTNSYIPEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E L + I + F P R R LLL++REI++L +R G T++P+++Y+
Sbjct: 61 GEAILLGATINPLKNSCAFVVCDPTRTRVLLLNRREINKLIGQSQRQGYTIIPLRLYWKG 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+++ +A+GK+ +DKR++ K++ W R+K RI++++
Sbjct: 121 S-WAKLEIGIAKGKQEHDKRDSLKEKQWQREKERIMKKN 158
>gi|115525036|ref|YP_781947.1| SsrA-binding protein [Rhodopseudomonas palustris BisA53]
gi|122295825|sp|Q07M67|SSRP_RHOP5 RecName: Full=SsrA-binding protein
gi|115518983|gb|ABJ06967.1| SsrA-binding protein [Rhodopseudomonas palustris BisA53]
Length = 157
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 92/156 (58%), Positives = 119/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E
Sbjct: 1 MAEKNERPIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSVRNGKTTIAESYADSRGGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R GMTL+P+K+YFN KG
Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLIPLKLYFNEKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ LALA+GK+ +DKRETEKKRDW ++K R++R
Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSKEKGRLMRAK 156
>gi|78222855|ref|YP_384602.1| SsrA-binding protein [Geobacter metallireducens GS-15]
gi|78194110|gb|ABB31877.1| SsrA-binding protein [Geobacter metallireducens GS-15]
Length = 172
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I FEAG+VL GTEVKSLR+ K N++DS+A + EI+L N +
Sbjct: 21 GEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH 80
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLL+ K EI +L+ +R G ++VP+++YF GLAK++L L
Sbjct: 81 INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 139
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R+ + LRE +
Sbjct: 140 AKGKKLYDKREDMKKKDQSREMAQALRERS 169
>gi|238753942|ref|ZP_04615302.1| hypothetical protein yruck0001_7170 [Yersinia ruckeri ATCC 29473]
gi|238707930|gb|EEQ00288.1| hypothetical protein yruck0001_7170 [Yersinia ruckeri ATCC 29473]
Length = 164
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GK+++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKRDHDKRDDIKDREWQVDKARIMKHAN 163
>gi|37527252|ref|NP_930596.1| SsrA-binding protein [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|39932263|sp|Q7N1U1|SSRP_PHOLL RecName: Full=SsrA-binding protein
gi|36786686|emb|CAE15752.1| SsrA-binding protein (small protein B) [Photorhabdus luminescens
subsp. laumondii TTO1]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ NR+AR+ Y I FEAG+ L G EVKSLR K NISDSY ++
Sbjct: 1 MTKKKAHKPGSATIAMNRRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVLLKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ +L + I ++ P R+RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GDAYLFGATITPLNVASSHVVCDPMRSRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVRIGVAKGKKAHDKRSDIKEREWKLDKARIMKN 157
>gi|238759660|ref|ZP_04620820.1| hypothetical protein yaldo0001_24650 [Yersinia aldovae ATCC 35236]
gi|238702088|gb|EEP94645.1| hypothetical protein yaldo0001_24650 [Yersinia aldovae ATCC 35236]
Length = 164
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEAEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK++DKR+ K R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQLDKARIMKHAN 163
>gi|312880285|ref|ZP_07740085.1| SsrA-binding protein [Aminomonas paucivorans DSM 12260]
gi|310783576|gb|EFQ23974.1| SsrA-binding protein [Aminomonas paucivorans DSM 12260]
Length = 157
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 98/152 (64%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ V+ N+KAR++Y I+ S E G+VLTGTE+KS+R +VN+ + Y+ ++ E+WL
Sbjct: 2 SENGDRTVAQNKKARFDYFILESMEVGVVLTGTEIKSVRAGQVNLKEGYSAVKDGELWLF 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + + +N P R RKLL +K +I RL V+ G+TLVP+K+Y AK++
Sbjct: 62 GVHIAPYEKGSYYNPDPVRPRKLLATKGQILRLSQKVKEKGLTLVPLKMYLKENRWAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L LA+GK+ +DKR++ +RD +R+ R LR
Sbjct: 122 LGLAKGKQAHDKRDSVAERDAEREISRALRRR 153
>gi|283835671|ref|ZP_06355412.1| SsrA-binding protein [Citrobacter youngae ATCC 29220]
gi|291068886|gb|EFE06995.1| SsrA-binding protein [Citrobacter youngae ATCC 29220]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + + P R RKLLL++RE+ LY + RDG T+V + +Y+
Sbjct: 61 GEAFLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRMNRDGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKN 157
>gi|307332067|ref|ZP_07611157.1| SsrA-binding protein [Streptomyces violaceusniger Tu 4113]
gi|306882290|gb|EFN13386.1| SsrA-binding protein [Streptomyces violaceusniger Tu 4113]
Length = 159
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 101/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ N+KAR++YHI+ ++E G+VLTGTEVKSLR + ++ D +A +
Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHILDTYECGLVLTGTEVKSLRQGRASLVDGFAQLDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N +IPEY Q NH RR RKLLL + EI +L + G TLVP+ +YF
Sbjct: 57 GEAWLHNVHIPEYSQGTWTNHSARRRRKLLLHRAEIDKLIGKTQETGHTLVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T ++R R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLRERQDRRESDRAI 150
>gi|259907658|ref|YP_002648014.1| SsrA-binding protein [Erwinia pyrifoliae Ep1/96]
gi|224963280|emb|CAX54765.1| Small protein B, tmRNA-binding protein [Erwinia pyrifoliae Ep1/96]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + P + ++ P R+RKLLL +RE+ L+ RDG T+V + +Y+
Sbjct: 61 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLFGKANRDGYTIVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159
>gi|297194075|ref|ZP_06911473.1| SsrA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
gi|197720910|gb|EDY64818.1| SsrA-binding protein [Streptomyces pristinaespiralis ATCC 25486]
Length = 159
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ N+KAR++YHI+ ++E G+VL GTEVKSLR + +++D + +
Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHILDTYECGLVLMGTEVKSLRQGRASLADGFVQIDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL N ++PEY Q NH RR RKLL+ + EI +L + + G T+VP+ +YF
Sbjct: 57 NEAWLHNVHVPEYSQGTWTNHSARRKRKLLMHREEIDKLESKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRREADRAM 150
>gi|183599799|ref|ZP_02961292.1| hypothetical protein PROSTU_03308 [Providencia stuartii ATCC 25827]
gi|188022064|gb|EDU60104.1| hypothetical protein PROSTU_03308 [Providencia stuartii ATCC 25827]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY +
Sbjct: 1 MTKKKAYKPGSATIALNKRARHEYSIEDEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R+RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGANITPLNVASSHVVCDPTRSRKLLLNQRELDTLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK +DKR K+R+W K RI++ N
Sbjct: 120 NAWCKVKIGVAKGKKAHDKRSDIKEREWKLDKARIMKHSN 159
>gi|111220819|ref|YP_711613.1| SsrA-binding protein [Frankia alni ACN14a]
gi|122954536|sp|Q0RR00|SSRP_FRAAA RecName: Full=SsrA-binding protein
gi|111148351|emb|CAJ60023.1| SsrA-binding protein [Frankia alni ACN14a]
Length = 159
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 64/152 (42%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K ++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL
Sbjct: 3 KETGRKSIAQNKRARHDYDILDTYEAGLVLRGTEVKALRAGRASLVDGFAQVSDGEIWLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY + NH PRR RK+LL + EI +L + G+TLVP+ +Y+ G AKI+
Sbjct: 63 NVHIPEYTEGTWTNHAPRRKRKMLLHRAEIEKLIGQTQEGGLTLVPLALYWKD-GRAKIE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ALA+G+K+YDKR +RD R+ R +
Sbjct: 122 IALARGRKSYDKRHALAERDAAREISREMGRR 153
>gi|253988750|ref|YP_003040106.1| SsrA-binding protein [Photorhabdus asymbiotica subsp. asymbiotica
ATCC 43949]
gi|211637925|emb|CAR66553.1| small protein b-RNA Binding protein [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253780200|emb|CAQ83361.1| small protein b-RNA Binding protein [Photorhabdus asymbiotica]
Length = 160
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ NR+AR+ Y I FEAG+ L G EVKSLR K NISDSY ++
Sbjct: 1 MTKKKAHKPGSATIAMNRRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVLLKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ +L + I ++ P R+RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GDAYLFGATITPLNVASSHVVCDPMRSRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKAHDKRSDIKEREWKLDKARIMKN 157
>gi|317049198|ref|YP_004116846.1| SsrA-binding protein [Pantoea sp. At-9b]
gi|316950815|gb|ADU70290.1| SsrA-binding protein [Pantoea sp. At-9b]
Length = 160
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P V+ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATVALNKRARHEYFIEEEFEAGMSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ P RNRKLLL +RE+ LY V R+G T+V + IY+
Sbjct: 61 GEAYLFGATFQPLAVASSHVVCDPTRNRKLLLKQRELDSLYGRVNREGYTVVALSIYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR+ K+R+W K RI++ N
Sbjct: 120 NAWAKLKIGVARGKKEHDKRDDIKEREWKLDKARIMKNSN 159
>gi|238063027|ref|ZP_04607736.1| SsrA-binding protein [Micromonospora sp. ATCC 39149]
gi|237884838|gb|EEP73666.1| SsrA-binding protein [Micromonospora sp. ATCC 39149]
Length = 159
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/145 (48%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+KVV+ N+KAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A EI+L
Sbjct: 6 GRKVVASNKKARHDYAILDTYEAGMSLTGTEVKSLRAGRASLIDAFAQERGGEIYLHGMN 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY Q NH PRR RKLLL + EI RL R G+TLVP+++YF+ G AK+++ L
Sbjct: 66 IPEYKQGTWTNHEPRRTRKLLLKRLEIDRLIGKTRESGLTLVPLQVYFSD-GWAKVEIGL 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRI 154
A+GKK YDKR+ KRD +R+ R+
Sbjct: 125 AKGKKTYDKRQDLAKRDAEREIARV 149
>gi|269925807|ref|YP_003322430.1| SsrA-binding protein [Thermobaculum terrenum ATCC BAA-798]
gi|269789467|gb|ACZ41608.1| SsrA-binding protein [Thermobaculum terrenum ATCC BAA-798]
Length = 161
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 100/160 (62%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGN-PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS + + +K ++ NRKA ++Y I EAG+ LTG+E+KS+R KVN+ D+YA E
Sbjct: 1 MSKTQQSSAEGQKTIAVNRKAFHDYAIEDKIEAGLALTGSEIKSIRQGKVNLRDAYARVE 60
Query: 60 NDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E W+ N +I Y Q+ FNH P R RKLLL ++EI L + G TLVP+++Y
Sbjct: 61 NGEAWVYNMHISPYEQSGKYFNHDPLRPRKLLLHRKEIASLAGKQQIRGYTLVPLRLYLK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AKI++ALA+GK+ YDKR+ +RD R+ ++
Sbjct: 121 -NGIAKIEIALAKGKREYDKRQAIAERDAQREIQAAMKHR 159
>gi|182678836|ref|YP_001832982.1| SsrA-binding protein [Beijerinckia indica subsp. indica ATCC 9039]
gi|238691219|sp|B2IDQ9|SSRP_BEII9 RecName: Full=SsrA-binding protein
gi|182634719|gb|ACB95493.1| SsrA-binding protein [Beijerinckia indica subsp. indica ATCC 9039]
Length = 158
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 90/157 (57%), Positives = 123/157 (78%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND- 61
+ ++ K+ ++NRKARYNY I +FEAG++LTGTEVKSLR K I++SYA+ + +
Sbjct: 1 MAAKKPSAFKIAAENRKARYNYEIGETFEAGLMLTGTEVKSLRTGKATIAESYASVDREG 60
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E++L N+ IPEYL+ANRFNH P+R RKLLL REI +L V R GMT+VP+KIYFN +G
Sbjct: 61 EVFLVNATIPEYLEANRFNHAPKRPRKLLLHGREIAKLSQGVERQGMTIVPLKIYFNDRG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AKI++ALA+GK+ +DKRETEKKRDW+++K R+LR+
Sbjct: 121 RAKIEIALARGKQLHDKRETEKKRDWNKEKGRLLRDK 157
>gi|253687124|ref|YP_003016314.1| SsrA-binding protein [Pectobacterium carotovorum subsp. carotovorum
PC1]
gi|259511426|sp|C6D970|SSRP_PECCP RecName: Full=SsrA-binding protein
gi|251753702|gb|ACT11778.1| SsrA-binding protein [Pectobacterium carotovorum subsp. carotovorum
PC1]
Length = 160
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K N+SDSY TF N
Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANLSDSYVTFMN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R RKLLL+KRE+ L+ V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKRELESLFGRVSREGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+K+ + +A+GKK++DKR+ K+R+W K RI++ N
Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKLDKARIMKNAN 159
>gi|300783179|ref|YP_003763470.1| SsrA-binding protein [Amycolatopsis mediterranei U32]
gi|299792693|gb|ADJ43068.1| SsrA-binding protein [Amycolatopsis mediterranei U32]
Length = 160
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KV+ NRKAR++Y I+ ++E G+VL GTEVKSLR K +++D++AT ++ E+WL
Sbjct: 3 KERGQKVIVSNRKARHDYSILDTYECGLVLVGTEVKSLREGKASLADAFATVDDGEVWLR 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY Q NH PRR RKLLL +REI +L + G++LVP+ +YF G K++
Sbjct: 63 NVHIPEYTQGTWTNHMPRRTRKLLLHRREIEKLIGKTKESGLSLVPLSMYFKD-GKVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ALAQGKK YDKR+T KRD DR + +
Sbjct: 122 IALAQGKKAYDKRQTLAKRDADRDIRKAM 150
>gi|298490189|ref|YP_003720366.1| SsrA-binding protein ['Nostoc azollae' 0708]
gi|298232107|gb|ADI63243.1| SsrA-binding protein ['Nostoc azollae' 0708]
Length = 155
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 71/153 (46%), Positives = 97/153 (63%), Gaps = 2/153 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
N KV++DNR+ARY Y I+ ++E GI LTGTEVKS+R KVN+ D Y N E WL
Sbjct: 4 KNEGFKVITDNRQARYLYEILETYEVGIQLTGTEVKSIRAGKVNLKDGYGLIRNGEAWLI 63
Query: 67 NSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N++I Y + FNH PRR RKLLL ++EI +L V + G+TLVP+K+Y G K+
Sbjct: 64 NAHISPYTSSGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLQG-GWVKL 122
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +GKK +DKRE K+R R R ++ +
Sbjct: 123 SIGLGKGKKVHDKREDIKRRQDQRDIQRAMKSY 155
>gi|257785070|ref|YP_003180287.1| SsrA-binding protein [Atopobium parvulum DSM 20469]
gi|257473577|gb|ACV51696.1| SsrA-binding protein [Atopobium parvulum DSM 20469]
Length = 161
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 95/159 (59%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KK ++ NR AR+ Y I +FE G+VLTGTEVKSLR ++D++ +
Sbjct: 1 MAENQVKQQGKKSIARNRSARHEYEIGETFECGLVLTGTEVKSLRERGCQLTDTFCLIRD 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E W+ ++ Y +N P R RKLLL +R+I L +R+ G+ LVP++IYF+
Sbjct: 61 GEAWIHGMHLHPYTNGGVWNVDPDRKRKLLLHRRQIDYLDGKLRQKGLALVPLEIYFDEH 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ +AL+QGKK YDKR + KRD DR+ R L+E +
Sbjct: 121 NRVKLLIALSQGKKLYDKRASAAKRDSDREIQRALKERS 159
>gi|108798583|ref|YP_638780.1| SsrA-binding protein [Mycobacterium sp. MCS]
gi|119867683|ref|YP_937635.1| SsrA-binding protein [Mycobacterium sp. KMS]
gi|126434182|ref|YP_001069873.1| SsrA-binding protein [Mycobacterium sp. JLS]
gi|122977206|sp|Q1BBL0|SSRP_MYCSS RecName: Full=SsrA-binding protein
gi|187611486|sp|A3PWV5|SSRP_MYCSJ RecName: Full=SsrA-binding protein
gi|187611487|sp|A1UDD7|SSRP_MYCSK RecName: Full=SsrA-binding protein
gi|108769002|gb|ABG07724.1| SsrA-binding protein [Mycobacterium sp. MCS]
gi|119693772|gb|ABL90845.1| SsrA-binding protein [Mycobacterium sp. KMS]
gi|126233982|gb|ABN97382.1| SsrA-binding protein [Mycobacterium sp. JLS]
Length = 168
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ +VV+ NR+AR+NY I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL
Sbjct: 13 KDRNNQVVASNRRARHNYAILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLR 72
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY + NH PRRNRKLLL +REI L +R +TLVP+ +YF G K++
Sbjct: 73 NLHIPEYQHGSWTNHAPRRNRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTG-GKVKVE 131
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA+GK+ +DKR+ +RD +R+ R L
Sbjct: 132 LALARGKQAHDKRQDLARRDAEREVVRELGRR 163
>gi|291618464|ref|YP_003521206.1| SmpB [Pantoea ananatis LMG 20103]
gi|291153494|gb|ADD78078.1| SmpB [Pantoea ananatis LMG 20103]
gi|327394860|dbj|BAK12282.1| SsrA-binding protein SmpB [Pantoea ananatis AJ13355]
Length = 160
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + ++ P R+RKLLL +RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAYLFGSTFQPLAVASSHVVCDPTRSRKLLLKQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK +DKR K R+W K RI++ N
Sbjct: 120 NAWCKLKIGVARGKKEHDKRNDIKDREWQMDKARIMKNAN 159
>gi|50119779|ref|YP_048946.1| SsrA-binding protein [Pectobacterium atrosepticum SCRI1043]
gi|61216499|sp|Q6D8Y5|SSRP_ERWCT RecName: Full=SsrA-binding protein
gi|49610305|emb|CAG73749.1| SsrA-binding protein [Pectobacterium atrosepticum SCRI1043]
Length = 160
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+VL G EVKSLR K N+SDSY TF N
Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYSIEEEFEAGLVLQGWEVKSLRAGKANLSDSYVTFMN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R RKLLL+KRE+ L+ V RDG T+V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKREMDSLFGRVSRDGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+K+ + +A+GKK++DKR+ K+R+W K RI++ N
Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKLDKARIMKNAN 159
>gi|83858187|ref|ZP_00951709.1| SsrA-binding protein [Oceanicaulis alexandrii HTCC2633]
gi|83853010|gb|EAP90862.1| SsrA-binding protein [Oceanicaulis alexandrii HTCC2633]
Length = 156
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 116/156 (74%), Gaps = 3/156 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K +V+ NR+AR++Y I +FEAGI L GTEVKSLR K NI++SY + E+
Sbjct: 1 MSKKKEDAG---LVAVNRRARFDYEIEETFEAGIQLVGTEVKSLRAGKANIAESYVSPED 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L NS IP Y NRFNH PRR RKLLL K+EI+++ +V R+G T+VP+++YFN +
Sbjct: 58 GEVYLINSDIPPYDHGNRFNHAPRRRRKLLLKKKEINKIAGSVAREGRTVVPLRMYFNER 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
G+AK+ +ALA+GKK DKRET+K+RDW RQK R+++
Sbjct: 118 GIAKLQIALAKGKKTVDKRETKKERDWQRQKSRLMK 153
>gi|297159940|gb|ADI09652.1| SsrA-binding protein [Streptomyces bingchenggensis BCW-1]
Length = 159
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ N+KAR++YHI+ ++EAG+VLTGTEVKSLR + ++ D +A +
Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHILDTYEAGLVLTGTEVKSLRQGRASLVDGFAQLDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N +IPEY Q NH RR RK+LL + EI +L + G TLVP+ +YF
Sbjct: 57 GEAWLHNVHIPEYSQGTWTNHSARRKRKMLLHRAEIDKLIVKTQETGHTLVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRRESDRAI 150
>gi|295097186|emb|CBK86276.1| SsrA-binding protein [Enterobacter cloacae subsp. cloacae NCTC
9394]
Length = 160
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ + P R RKLLL+KRE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAFLFGANFTPLTVASSHYVCDPTRTRKLLLNKRELESLYGRINREGFTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRTDLKAREWQLDKARIMKN 157
>gi|294629644|ref|ZP_06708204.1| SsrA-binding protein [Streptomyces sp. e14]
gi|292832977|gb|EFF91326.1| SsrA-binding protein [Streptomyces sp. e14]
Length = 159
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLILDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L A + G T+VP+ +YF
Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRLEIDKLEAKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRREAERAM 150
>gi|296104290|ref|YP_003614436.1| SsrA-binding protein [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295058749|gb|ADF63487.1| SsrA-binding protein [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 160
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ + P R RKLLL+KRE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAFLFGANFTPLTVASSHYVCDPTRTRKLLLNKRELESLYGRINREGFTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKVGVAKGKKQHDKRTDLKEREWQLDKARIMKN 157
>gi|144899920|emb|CAM76784.1| SmpB protein [Magnetospirillum gryphiswaldense MSR-1]
Length = 153
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 79/150 (52%), Positives = 110/150 (73%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P+++ + NRKAR+ Y IV + EAGI+L GTE+KSLR K NIS+++A DE+ L N+Y
Sbjct: 4 PERIAAQNRKARHEYTIVDTIEAGIMLVGTEIKSLRAGKGNISEAFAGPNGDELILYNAY 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY F H RR RKLLL +RE+ +L A+ +DGMTLVP+ I+FN +G+AK+ L L
Sbjct: 64 IPEYQAKMPFPHETRRPRKLLLHRRELRKLVGAIAKDGMTLVPLDIHFNNRGIAKVQLGL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+G+K +DKRE K+RDW+R+K R+LR +
Sbjct: 124 AKGRKAHDKREAIKQRDWNREKARVLRNRD 153
>gi|152971469|ref|YP_001336578.1| SsrA-binding protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|206575767|ref|YP_002237042.1| SsrA-binding protein [Klebsiella pneumoniae 342]
gi|238896065|ref|YP_002920801.1| SsrA-binding protein [Klebsiella pneumoniae NTUH-K2044]
gi|262043866|ref|ZP_06016955.1| SsrA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|288934005|ref|YP_003438064.1| SsrA-binding protein [Klebsiella variicola At-22]
gi|290510935|ref|ZP_06550304.1| SsrA-binding protein [Klebsiella sp. 1_1_55]
gi|330013062|ref|ZP_08307566.1| SsrA-binding protein [Klebsiella sp. MS 92-3]
gi|166223223|sp|A6TCM7|SSRP_KLEP7 RecName: Full=SsrA-binding protein
gi|226706526|sp|B5XVJ3|SSRP_KLEP3 RecName: Full=SsrA-binding protein
gi|150956318|gb|ABR78348.1| SsrA-binding protein [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|206564825|gb|ACI06601.1| SsrA-binding protein [Klebsiella pneumoniae 342]
gi|238548383|dbj|BAH64734.1| SsrA tmRNA-binding protein [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|259038800|gb|EEW39982.1| SsrA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|288888734|gb|ADC57052.1| SsrA-binding protein [Klebsiella variicola At-22]
gi|289775928|gb|EFD83927.1| SsrA-binding protein [Klebsiella sp. 1_1_55]
gi|328533610|gb|EGF60325.1| SsrA-binding protein [Klebsiella sp. MS 92-3]
Length = 160
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I +EAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEDEYEAGLALQGWEVKSLRAGKANIGDSYVILKD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 61 GEAFLFGANFTPMAVASTHYVCDPTRTRKLLLNQRELDTLYGRINREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRTDLKDREWALDKARIMKH 157
>gi|310764837|gb|ADP09787.1| SsrA-binding protein (Small protein B) [Erwinia sp. Ejp617]
Length = 160
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + P + ++ P R+RKLLL +RE+ L+ RDG T+V + +Y+
Sbjct: 61 GEAFLFGSTFQPLSVASSHIACDPTRSRKLLLKQRELDTLFGKANRDGYTIVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159
>gi|329297608|ref|ZP_08254944.1| SmpB [Plautia stali symbiont]
Length = 160
Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGMALQGWEVKSLRAGKANISDSYILLSD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + ++ P RNRKLLL++RE+ L+ V R+G T+V + +Y+
Sbjct: 61 GEAYLFGSTFQPLAVASSHVVCDPTRNRKLLLNQRELDSLFGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR K R+W K RI++ +
Sbjct: 120 NAWAKLKIGVARGKKEHDKRADIKDREWKMDKARIMKNAS 159
>gi|300023759|ref|YP_003756370.1| SsrA-binding protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299525580|gb|ADJ24049.1| SsrA-binding protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 157
Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 112/156 (71%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ + +V++NRKAR+ Y I S+EAGI L G+EVKSLR + NI++SYA+ E+
Sbjct: 1 MAAKRDDGSTLVAENRKARHEYFITDSWEAGIELLGSEVKSLRRGQSNIAESYASVEDQG 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL NSYI EY A+ F H PRR R+LL+ +EIH++ AV R GMTLVP+++YFN KG
Sbjct: 61 VWLINSYIAEYPGASLFPHEPRRKRRLLMHAKEIHKIAIAVERKGMTLVPLELYFNEKGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + LAQGK DKR+ KRDW+RQK R++R+
Sbjct: 121 AKVKVGLAQGKNQSDKRQDAAKRDWNRQKARLMRDR 156
>gi|317490999|ref|ZP_07949435.1| SsrA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920546|gb|EFV41869.1| SsrA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 173
Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I EAG+ L G EVKS+R K NI+DSY TF +
Sbjct: 14 MTKKKAHKPGSATIAMNKRARHEYFIEEEIEAGLALQGWEVKSMRAGKANITDSYVTFRD 73
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL KRE+ L V RDG T+V + +Y+
Sbjct: 74 GEAYLFGATIQPLNVASTHVVCDPTRTRKLLLKKRELETLIGKVSRDGFTVVALSLYWK- 132
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+K+ + LA+GKK +DKR+ K R+W K RI++ N
Sbjct: 133 NAWSKVKIGLAKGKKEHDKRDDIKDREWKLDKARIMKNSN 172
>gi|323963928|gb|EGB59421.1| SsrA-binding protein [Escherichia coli M863]
gi|327252325|gb|EGE63997.1| ssrA-binding protein [Escherichia coli STEC_7v]
Length = 160
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P + N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIELNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|154253303|ref|YP_001414127.1| SsrA-binding protein [Parvibaculum lavamentivorans DS-1]
gi|187629765|sp|A7HX37|SSRP_PARL1 RecName: Full=SsrA-binding protein
gi|154157253|gb|ABS64470.1| SsrA-binding protein [Parvibaculum lavamentivorans DS-1]
Length = 165
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FEND 61
K + +K+++DNRKAR+NY I +FEAGI L G+EVKSLR + +++++YA
Sbjct: 8 AKKKAGDGRKIIADNRKARFNYSIGETFEAGIELKGSEVKSLRTGQGSLNEAYAQVTRTG 67
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E+ L N+YIP YLQAN+FNH RR RKLLL KREI +L AAV+R GMT+VP+++YF KG
Sbjct: 68 EVMLVNAYIPIYLQANQFNHETRRPRKLLLHKREIEKLAAAVQRQGMTVVPLRMYFTDKG 127
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ LAQGKK DKRET K+R W+R K R++RE
Sbjct: 128 RVKVEIGLAQGKKLADKRETLKERSWERDKARLMREK 164
>gi|284051220|ref|ZP_06381430.1| SsrA-binding protein [Arthrospira platensis str. Paraca]
gi|291566597|dbj|BAI88869.1| SsrA-binding protein [Arthrospira platensis NIES-39]
Length = 155
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ + K+++DNRKARY Y I+ ++EAGI L GTEVKS+R + N+ D YA + E+W
Sbjct: 2 SKDSNGYKILTDNRKARYLYEILDTYEAGIELKGTEVKSIRAGRSNLQDGYALVRDGEVW 61
Query: 65 LTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I Y N FNH PRR RKLLL ++EI++L V + G+TLVP+++Y +G
Sbjct: 62 LINVHISPYENTSNFFNHDPRRTRKLLLHRQEINKLIGQVEQKGLTLVPLRMYLK-RGRV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ + LA+GKK +DKRET ++RD R R L++
Sbjct: 121 KVMIGLARGKKLHDKRETIRRRDDARSMQRALKQF 155
>gi|188494999|ref|ZP_03002269.1| SsrA-binding protein [Escherichia coli 53638]
gi|188490198|gb|EDU65301.1| SsrA-binding protein [Escherichia coli 53638]
Length = 160
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKLGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|304559913|gb|ADM42577.1| tmRNA-binding protein SmpB [Edwardsiella tarda FL6-60]
Length = 161
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +N
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + P + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+
Sbjct: 61 GEAFLFGATFTPLSVASSHVVCDPTRTRKLLLKERELATLFGSANRDGYTIVPLSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRET-EKKRDWDRQKHRILRE 157
AK+ + +A+GKK +DKR+ K R+W + K RI++
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIIKAREWQQDKARIMKN 158
>gi|254438863|ref|ZP_05052357.1| SsrA-binding protein [Octadecabacter antarcticus 307]
gi|198254309|gb|EDY78623.1| SsrA-binding protein [Octadecabacter antarcticus 307]
Length = 179
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K NP KV+++NR+ARY++ I E GI+L G+EVKSLRV + NI+DSYAT
Sbjct: 22 MAKKPDQNPNYKVIAENRRARYDFAIESDVECGIILAGSEVKSLRVGQSNIADSYATVAE 81
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H R RKLL+SKRE+ R+ A+ R+GMTLVP+ +YFN K
Sbjct: 82 GELWLINSYIAPYQQAM-FPHEDRARRKLLVSKRELVRMGNAISREGMTLVPLVMYFNHK 140
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ +A+A+GK+ DKR TE RDW RQK R+LR
Sbjct: 141 GRVKVKIAIAKGKQKQDKRATEAARDWGRQKARLLRH 177
>gi|85059782|ref|YP_455484.1| SsrA-binding protein [Sodalis glossinidius str. 'morsitans']
gi|123519047|sp|Q2NRZ6|SSRP_SODGM RecName: Full=SsrA-binding protein
gi|84780302|dbj|BAE75079.1| small protein B [Sodalis glossinidius str. 'morsitans']
Length = 160
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 1 MTKKKEHKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANIGDSYVLLKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + ++ P R RKLLL+KRE+ L+ V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATFQPLTVASSHVVCDPMRTRKLLLNKRELDSLFGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK YDKR K+R+W K RI++ +
Sbjct: 120 NAWVKVKIGVAKGKKEYDKRTDIKEREWQLDKSRIMKHAS 159
>gi|254427993|ref|ZP_05041700.1| SsrA-binding protein [Alcanivorax sp. DG881]
gi|196194162|gb|EDX89121.1| SsrA-binding protein [Alcanivorax sp. DG881]
Length = 159
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M + N P ++ NRKAR+ YH+ FEAG+VL G EVKSLR K N++++Y +
Sbjct: 1 MGKANKKANAPSATIAQNRKARHEYHLEEHFEAGLVLEGWEVKSLRAGKGNLTEAYVLLK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L + + N P R RKLLL +RE+ R++ V++DG T VP+ +Y+
Sbjct: 61 NGEAFLFGARFEPLNTASTHVNPDPTRTRKLLLHRRELGRVFGGVQKDGFTCVPVSLYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG AK D+ALA+GK+ +DKR TEK+RDW+RQK RILR+
Sbjct: 121 -KGFAKCDIALAKGKQKFDKRATEKERDWNRQKQRILRQR 159
>gi|262277155|ref|ZP_06054948.1| SsrA-binding protein [alpha proteobacterium HIMB114]
gi|262224258|gb|EEY74717.1| SsrA-binding protein [alpha proteobacterium HIMB114]
Length = 156
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 81/155 (52%), Positives = 117/155 (75%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ N +V+ NRKA +NY + EAGI L G+EVKSLR K +I+D+YA EI+
Sbjct: 2 SKKNASSNIVAQNRKASFNYFFEDTLEAGIELLGSEVKSLRAGKGSIADAYALDSEGEIY 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N+YIPEY Q++ NH PRR RKLLL+K+EI+++ + RDG T+VP KIYFN+KG+AK
Sbjct: 62 LHNTYIPEYKQSSYNNHDPRRLRKLLLNKKEINKIIGKINRDGFTVVPTKIYFNSKGIAK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++A+A+GKK +DKR+T+K+RDW+R+K R+ R+ +
Sbjct: 122 VNIAIAKGKKLHDKRQTKKQRDWNREKSRVFRKSS 156
>gi|271962996|ref|YP_003337192.1| SmpB protein [Streptosporangium roseum DSM 43021]
gi|270506171|gb|ACZ84449.1| SmpB protein [Streptosporangium roseum DSM 43021]
Length = 155
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KV++ N++A ++YHI ++EAG+VL GTEVKSLR+ + ++ D YA ++ E WL N
Sbjct: 5 TGRKVIAQNKRAWHDYHIEDTYEAGLVLQGTEVKSLRLGRASLLDGYAVIKDGEAWLINV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH RR RKLLL ++EI +L + + G+TL+P+ IYF G AKI++
Sbjct: 65 HIPEYTMGTWTNHAARRTRKLLLHRKEIDKLVSKTKEGGLTLIPLAIYFKD-GKAKIEIG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK++DKR+T + R+ R LR N
Sbjct: 124 LAKGKKDWDKRQTLAENQAKREMARSLRYRN 154
>gi|6136301|gb|AAF04322.1| SmpB [Bradyrhizobium japonicum]
Length = 158
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 87/146 (59%), Positives = 114/146 (78%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P KV+++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E
Sbjct: 1 MADKNERPIKVMAENRKARFNYAIEDTIEAGIALTGTEVKSIRNGKSTIAESYADSKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL N+ IPEYLQ NRFNH P+R RKLLL +R+I++L V R+GMTL+P+K+YFN +G
Sbjct: 61 IWLINATIPEYLQGNRFNHEPKRPRKLLLHRRQINKLIGPVDREGMTLIPLKLYFNGRGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWD 148
AK+ LA+A+GKK +DKRETEKKRDW+
Sbjct: 121 AKLQLAVAKGKKLHDKRETEKKRDWE 146
>gi|311695981|gb|ADP98854.1| SsrA-binding protein [marine bacterium HP15]
Length = 159
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + P ++ N+KA++ YHI FEAG+ L G EVKSLR K + D+Y ++
Sbjct: 1 MSKK-KPGTPSNTIALNKKAKHEYHIEERFEAGLSLLGWEVKSLRAGKAQLVDAYVLLKD 59
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL +EI ++ V + G T +P+ +Y+
Sbjct: 60 GEAWLLGSHITPLIAASTHVIADPTRTRKLLLHAKEIAKIVGKVNQAGYTCIPLALYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K ++AL +GKK +DKR TEK+RDW+RQK RILRE N
Sbjct: 119 NNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRILRETN 158
>gi|297570216|ref|YP_003691560.1| SsrA-binding protein [Desulfurivibrio alkaliphilus AHT2]
gi|296926131|gb|ADH86941.1| SsrA-binding protein [Desulfurivibrio alkaliphilus AHT2]
Length = 155
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 71/153 (46%), Positives = 101/153 (66%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ +P KVV N+KA ++YHI + EAG+VL G E+KSLR K N+ D YA +N+E++
Sbjct: 2 KKKDPGGKVVCTNKKAYHDYHIEQVLEAGMVLNGPEIKSLRAGKANLKDGYAQVKNNELF 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y A+ P R RKLLL +REI++L ++ G TLVP+KIY N +G AK
Sbjct: 62 LYNVHISPYPYASMTPPDPLRVRKLLLHRREINKLIGKLKEQGYTLVPLKIYLNPQGRAK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ L LA+GKK YDKR K+++ DR+ R++R
Sbjct: 122 LALGLAKGKKLYDKRAALKQKETDRELQRVMRR 154
>gi|15803140|ref|NP_289172.1| SsrA-binding protein [Escherichia coli O157:H7 EDL933]
gi|25317468|pir||F85908 small protein B [imported] - Escherichia coli (strain O157:H7,
substrain EDL933)
gi|12517044|gb|AAG57730.1|AE005491_10 small protein B [Escherichia coli O157:H7 str. EDL933]
Length = 160
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKXGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|259502762|ref|ZP_05745664.1| SsrA-binding protein [Lactobacillus antri DSM 16041]
gi|259169265|gb|EEW53760.1| SsrA-binding protein [Lactobacillus antri DSM 16041]
Length = 157
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M KS +++ N+KAR++Y + + EAG+VLTGTE+KS+R +VN+ D +A +N
Sbjct: 1 MVKKSPQKSNDNLIAQNKKARHDYFVTDTVEAGLVLTGTEIKSVRAHRVNLKDGFAQIKN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N +I EY N FN P RNRKLLL K+E+HRL ++ G+TL+P+K+Y
Sbjct: 61 GEAWLMNVHISEYDNGNIFNQDPLRNRKLLLHKKELHRLTGVLQDKGVTLIPLKMYIK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L +A+GK YDKRE K+R+ +R+ R+++ +
Sbjct: 120 GYAKVLLGVAKGKHQYDKREAIKRREQNREIERVMKHY 157
>gi|148653802|ref|YP_001280895.1| SsrA-binding protein [Psychrobacter sp. PRwf-1]
gi|172048566|sp|A5WH04|SSRP_PSYWF RecName: Full=SsrA-binding protein
gi|148572886|gb|ABQ94945.1| SsrA-binding protein [Psychrobacter sp. PRwf-1]
Length = 158
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P ++ N+KAR+ Y I ++EAG+VL G EVK++R K++I+++Y F +E
Sbjct: 1 MAKKTKKPSNQIAANKKARHEYFIEETYEAGLVLQGWEVKAIRAGKMSITEAYVVFRGNE 60
Query: 63 IWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L ++I P + + R RKLLL+++EI L+ AV + G VP+++Y+
Sbjct: 61 AFLFGAHIQPLLSSSTHVDPDSIRTRKLLLNRKEIDTLFGAVNQKGYACVPLEVYWKDS- 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K + LA+GKK +DKR+T K RDW+R K R ++H
Sbjct: 120 LVKCKIGLAKGKKLHDKRKTLKDRDWERDKERGFKQH 156
>gi|193071280|ref|ZP_03052200.1| SsrA-binding protein [Escherichia coli E110019]
gi|192955433|gb|EDV85916.1| SsrA-binding protein [Escherichia coli E110019]
Length = 160
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAEKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157
>gi|227529577|ref|ZP_03959626.1| SsrA-binding protein [Lactobacillus vaginalis ATCC 49540]
gi|227350536|gb|EEJ40827.1| SsrA-binding protein [Lactobacillus vaginalis ATCC 49540]
Length = 155
Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +++ N+KAR++Y + ++EAG+VLTGTE+KS+R +VN+ D +A N E
Sbjct: 1 MAKKHENNDNLIAQNKKARHDYFVTDTYEAGLVLTGTEIKSVRAHRVNLKDGFAQIRNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N +I EY FN P RNRKLLL K+EIH+L A++ G+TL+P+K+Y G
Sbjct: 61 AWLMNVHISEYDNGTFFNQDPLRNRKLLLHKKEIHKLTGALQDKGVTLIPLKMYIK-HGY 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ L LA+GK YDKRE+ K+R+ +R+ R+++ +
Sbjct: 120 AKVLLGLAKGKHEYDKRESIKRREANREMERVMKHY 155
>gi|269955838|ref|YP_003325627.1| SsrA-binding protein [Xylanimonas cellulosilytica DSM 15894]
gi|269304519|gb|ACZ30069.1| SsrA-binding protein [Xylanimonas cellulosilytica DSM 15894]
Length = 177
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 70/150 (46%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P + VV++N+KAR++Y I EAGIVL+GTEVK+LR+ + ++ D + + E WL
Sbjct: 25 PVRTVVANNKKARHDYVIEDVLEAGIVLSGTEVKALRMGRASLVDGFVLIDRGEAWLEGV 84
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY Q NH PRR RKLLL K EI RL V+ G T+VP+ +YF G AK+++A
Sbjct: 85 HIPEYFQGTWNNHAPRRKRKLLLHKDEIVRLSHKVQEKGHTIVPLSLYFLD-GRAKVEIA 143
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR+T +++ R+ R +R+
Sbjct: 144 LARGKKEYDKRQTLREQQDKREAQRAMRQR 173
>gi|260429421|ref|ZP_05783398.1| SsrA-binding protein [Citreicella sp. SE45]
gi|260420044|gb|EEX13297.1| SsrA-binding protein [Citreicella sp. SE45]
Length = 156
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + +P KV+++NR+AR++Y I E GIVL+G+EVKSLR + NI++SYA EN
Sbjct: 1 MA-QPKTDPNYKVIAENRRARFDYAIEDDLECGIVLSGSEVKSLRENTSNIAESYAAVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y F H RR RKLL+SK+E+ RL+ +R GMT+VP+ +YFN K
Sbjct: 60 SELWLVNSYIAPYE-RAMFGHEERRRRKLLVSKKELARLWNETQRKGMTIVPLVLYFNHK 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G+ K+ + +A+GKKN+DKRETE KRDW+RQK R+L++
Sbjct: 119 GVVKLKVGIAKGKKNHDKRETEAKRDWNRQKQRLLKQ 155
>gi|308187825|ref|YP_003931956.1| SsrA-binding protein (Small protein B) [Pantoea vagans C9-1]
gi|308058335|gb|ADO10507.1| SsrA-binding protein (Small protein B) [Pantoea vagans C9-1]
Length = 160
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P V+ N++AR+ Y I +EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATVAMNKRARHEYFIEEEYEAGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + ++ P R+RKLLL +RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGSTFQPLAVASSHVVCDPTRSRKLLLKQRELDSLYGRVNREGYTIVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR+ K R+W K RI++
Sbjct: 120 NAWCKLKIGVARGKKEHDKRDDIKDREWQLDKARIMKN 157
>gi|291439317|ref|ZP_06578707.1| SsrA-binding protein [Streptomyces ghanaensis ATCC 14672]
gi|291342212|gb|EFE69168.1| SsrA-binding protein [Streptomyces ghanaensis ATCC 14672]
Length = 163
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MGRTMAKEKGRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLTD 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 61 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 120 GRAKVEIALAKGKKEYDKRQTLREKQDRREAERAM 154
>gi|110833166|ref|YP_692025.1| SsrA-binding protein [Alcanivorax borkumensis SK2]
gi|110646277|emb|CAL15753.1| ssrA-binding protein [Alcanivorax borkumensis SK2]
Length = 166
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M + P ++ NRKAR+ YH+ FEAG+VL G EVKSLR K N++++Y +
Sbjct: 8 MGKANKKAKAPSATIAQNRKARHEYHLEEHFEAGLVLEGWEVKSLRAGKGNLTEAYVLLK 67
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L + + N P R RKLLL +RE+ R++ V++DG T VP+ +Y+
Sbjct: 68 NGEAFLFGARFEPLNTASTHVNPDPTRTRKLLLHRRELGRVFGGVQKDGFTCVPVSLYWK 127
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG AK D+ALA+GK+ +DKR TEK+RDW+RQK R+LR+
Sbjct: 128 -KGFAKCDIALAKGKQKFDKRATEKERDWNRQKQRVLRQR 166
>gi|294678896|ref|YP_003579511.1| ssrA-binding protein [Rhodobacter capsulatus SB 1003]
gi|294477716|gb|ADE87104.1| ssrA-binding protein [Rhodobacter capsulatus SB 1003]
Length = 157
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 119/156 (76%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P K++++NR+ARY+Y I EAGI+L G+EVK+LR + NI++SYA+ EN E
Sbjct: 1 MAQKSDPNSKLIAENRQARYHYAIESDLEAGIMLLGSEVKALRTGQSNIAESYASIENGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL NSYI Y QA+ F H RR+RKLL+SK+E+ RL+ AV R+GMTLVP+ +YFN +G
Sbjct: 61 LWLINSYIAAYQQASVFGHEERRHRKLLVSKKELARLWTAVGREGMTLVPLALYFNDRGK 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK DKRETE KRDW+RQK R+L+++
Sbjct: 121 VKLKLGVAKGKKLADKRETEAKRDWNRQKQRLLKQN 156
>gi|227549376|ref|ZP_03979425.1| SsrA-binding protein [Corynebacterium lipophiloflavum DSM 44291]
gi|227078561|gb|EEI16524.1| SsrA-binding protein [Corynebacterium lipophiloflavum DSM 44291]
Length = 163
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P VV+ NRKAR++Y I+ ++E GIVL GTE+KSLR K ++ +++AT +N
Sbjct: 1 MAKKKKKSPSGNVVATNRKARHDYTILDTWETGIVLVGTEIKSLRDGKASLVEAFATIDN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N +IPEY + NH PRR RKLL+ + EI L VR TLVP+ IY
Sbjct: 61 GEVWLRNLHIPEYSMGSWTNHSPRRTRKLLMHRSEIDSLEGKVRDGNRTLVPLSIYLKE- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK++L LAQGK++YDKR+ KKR DR+ R L +
Sbjct: 120 GKAKVELGLAQGKQDYDKRQAIKKRTEDREIARDLGKK 157
>gi|50954996|ref|YP_062284.1| SsrA-binding protein [Leifsonia xyli subsp. xyli str. CTCB07]
gi|61216491|sp|Q6AEL7|SSRP_LEIXX RecName: Full=SsrA-binding protein
gi|50951478|gb|AAT89179.1| small protein B [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 158
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +KVV+ NR+AR++Y I ++EAG+VLTGTEVKSLR+ + ++ D YA +
Sbjct: 1 MAK----ERGQKVVATNRRARHDYTIEDTYEAGLVLTGTEVKSLRLGRASLVDGYAFVDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +IPEY NH PRR RKLLL K +I ++ + V++ G T+VP++IYFN
Sbjct: 57 GEAWLDAVHIPEYADGTWNNHAPRRKRKLLLHKAQILKIESKVKQGGYTIVPLQIYFND- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ +A+GK+ YDKR+ ++R +R+ R +
Sbjct: 116 GRAKVEIGVAKGKREYDKRQALRERQDNREAQRAMASR 153
>gi|262203330|ref|YP_003274538.1| SsrA-binding protein [Gordonia bronchialis DSM 43247]
gi|262086677|gb|ACY22645.1| SsrA-binding protein [Gordonia bronchialis DSM 43247]
Length = 157
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ ++ NRKAR++Y I+ +FEAGI L GTEVKSLR K ++ D++AT ++ E+WL
Sbjct: 3 KEKGRTAIATNRKARHDYAILDTFEAGIALVGTEVKSLRAGKASLVDAFATIDDGEVWLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY + NH RR RKLL+ +REI L +R +TLVP+ +YFN G K++
Sbjct: 63 ALHIPEYGNGSWTNHTVRRKRKLLMHRREIDTLIGKIRDGNLTLVPLSMYFND-GRVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA+GK+ +DKR+ +R R+ R L
Sbjct: 122 LALARGKQAHDKRQDIARRTAQREVERELGRR 153
>gi|89897581|ref|YP_521068.1| SsrA-binding protein [Desulfitobacterium hafniense Y51]
gi|219670708|ref|YP_002461143.1| SsrA-binding protein [Desulfitobacterium hafniense DCB-2]
gi|122480579|sp|Q24MW8|SSRP_DESHY RecName: Full=SsrA-binding protein
gi|254778357|sp|B8FXV6|SSRP_DESHD RecName: Full=SsrA-binding protein
gi|89337029|dbj|BAE86624.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540968|gb|ACL22707.1| SsrA-binding protein [Desulfitobacterium hafniense DCB-2]
Length = 156
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ KV+SDNRKA ++Y + EAG++LTGTE+KS+R +VN+ DSYA EN E+WL
Sbjct: 3 SEGIKVISDNRKAYHDYFVEEKLEAGVILTGTEIKSIRNGRVNLKDSYARIENGEVWLYQ 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL++ EI +L V++ G+TL+P KIY +GLAKI+L
Sbjct: 63 LHISPYEQGNRFNHDPLRKRKLLLNRSEIIKLVGKVQQQGLTLIPTKIYLK-RGLAKIEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ +GKKNYDKR+ +RD R+ R R+
Sbjct: 122 GVCRGKKNYDKRQDIAERDAKREIERHFRD 151
>gi|312199806|ref|YP_004019867.1| SsrA-binding protein [Frankia sp. EuI1c]
gi|311231142|gb|ADP83997.1| SsrA-binding protein [Frankia sp. EuI1c]
Length = 159
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K ++ NR+AR+ Y I+ ++EAG+VLTGTEVKSLR+ + ++ D +A EN
Sbjct: 1 MAK----ETGRKNIAQNRRARHEYDILDTYEAGVVLTGTEVKSLRMGRASLVDGFAQIEN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL +IPEY + NH PRR RKLLL + EI +L + G+TLVP+ +Y+
Sbjct: 57 GEVWLHAVHIPEYTEGTWTNHAPRRKRKLLLHRDEIEKLVGKTKEGGLTLVPLALYWKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AKI++ALA+G+K+YDKR ++D R+ RI+
Sbjct: 116 GRAKIEIALARGRKSYDKRHALAEKDAKREMSRIM 150
>gi|296140710|ref|YP_003647953.1| SsrA-binding protein [Tsukamurella paurometabola DSM 20162]
gi|296028844|gb|ADG79614.1| SsrA-binding protein [Tsukamurella paurometabola DSM 20162]
Length = 159
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + V++ NRKAR+NY I+ +FEAG+VL GTEVK+LR K ++ D+YAT ++
Sbjct: 1 MAKEK----GRSVIASNRKARHNYAILDTFEAGVVLVGTEVKALREGKASLVDAYATIDD 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL +IPEY + NH PRR RKLL+ +REI L VR TLVP+ +YF+
Sbjct: 57 GEVWLRGLHIPEYGNGSWTNHTPRRTRKLLMHRREIDSLTGKVREGNQTLVPLSMYFSD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GK++YDKR+ +R +R+ R L
Sbjct: 116 GRVKVELALAKGKQDYDKRQDIARRTAERELVRELGRR 153
>gi|134097704|ref|YP_001103365.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338]
gi|291006336|ref|ZP_06564309.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338]
gi|166223449|sp|A4F8R5|SSRP_SACEN RecName: Full=SsrA-binding protein
gi|133910327|emb|CAM00440.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 106/155 (68%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ NR+AR+++ ++ ++E GIVLTGTEVKSLR K ++ D +AT +
Sbjct: 1 MAK----EQGRKLIAQNRRARHDWSVLDTYETGIVLTGTEVKSLRQGKASLVDGFATVDR 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N +IPEY + NH PRR+RKLLL K EI RL ++ G++L+P+ +YF+
Sbjct: 57 GEVWLRNVHIPEYTEGTWTNHEPRRSRKLLLHKGEIIRLIGKIQESGLSLIPLSLYFSD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK++LALA+GKK +DKR+ K+D R+ R +
Sbjct: 116 GKAKVELALAKGKKAHDKRQDLAKKDAQREIERAM 150
>gi|289522389|ref|ZP_06439243.1| SsrA-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289504225|gb|EFD25389.1| SsrA-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 152
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 95/146 (65%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+V+ NR+AR++Y I+ ++EAG+VLTGTE+KS+R +VN+ D YA E E WL N +I
Sbjct: 3 KKIVAQNRRARHDYFILETYEAGLVLTGTEIKSIRAGRVNLKDGYAKIEKGECWLYNVHI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + +NH P R RKLLL EI RL ++ G+TL+P+ IY AK++LALA
Sbjct: 63 SPYEKGTYYNHDPLRPRKLLLHNDEIKRLIGKTQQQGLTLIPLSIYLKNGKWAKVELALA 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156
QGKK YDKR +RD Q R +
Sbjct: 123 QGKKVYDKRHAIAERDARLQMERARK 148
>gi|323704176|ref|ZP_08115755.1| SsrA-binding protein [Thermoanaerobacterium xylanolyticum LX-11]
gi|323536242|gb|EGB26014.1| SsrA-binding protein [Thermoanaerobacterium xylanolyticum LX-11]
Length = 155
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ KV++ N+KA ++Y I +EAGIVL GTEVKS+R+ KVN+ DS+A EN+E++L
Sbjct: 2 SSENIKVLAQNKKASHDYFIDEVYEAGIVLFGTEVKSVRMGKVNLKDSFALIENNEVFLY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + N FN P R RKLLL++REI++L V + G TLVP+++Y GL K++
Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRREINKLTGYVTQKGYTLVPLRVYLK-HGLVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+A+GKK YDKRE +RD R+ R +E
Sbjct: 121 LAVARGKKLYDKREDMARRDAKREIERHFKE 151
>gi|83644078|ref|YP_432513.1| SsrA-binding protein [Hahella chejuensis KCTC 2396]
gi|123534495|sp|Q2SMN6|SSRP_HAHCH RecName: Full=SsrA-binding protein
gi|83632121|gb|ABC28088.1| SsrA-binding protein [Hahella chejuensis KCTC 2396]
Length = 160
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS N ++ N+KAR++YHIV FEAG+ LTG EVKSLR K + DSY ++
Sbjct: 1 MSQAKNKNTGS-TIALNKKARFDYHIVEKFEAGLALTGWEVKSLRAGKCQLVDSYVLLKD 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++I + + P R RKLLL +RE+++L AV + G T VP+ +Y+
Sbjct: 60 SEAWLLGAHITPLKEASTHVIADPTRTRKLLLHRRELNKLIGAVSQTGHTCVPLALYWKG 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K ++AL +GKK++DKRETEK+RDW+RQK R++R+H
Sbjct: 120 N-KVKCEIALVKGKKDFDKRETEKERDWNRQKQRVIRDH 157
>gi|300724097|ref|YP_003713414.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus
nematophila ATCC 19061]
gi|297630631|emb|CBJ91296.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus
nematophila ATCC 19061]
Length = 160
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY ++
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISESYVLLKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ +L + I ++ P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GDAFLFGATITPLNVASSHVVCDPTRLRKLLLNQRELDSLYGRVNREGYTIVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+KI + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWSKIKIGVAKGKKAHDKRSDIKEREWKLDKARIMKN 157
>gi|118473405|ref|YP_886451.1| SsrA-binding protein [Mycobacterium smegmatis str. MC2 155]
gi|166223228|sp|A0QU63|SSRP_MYCS2 RecName: Full=SsrA-binding protein
gi|118174692|gb|ABK75588.1| SsrA-binding protein [Mycobacterium smegmatis str. MC2 155]
Length = 161
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS KVV+ NRKAR+NY I+ ++EAGIVL GTEVKSLR + +++D++AT ++
Sbjct: 1 MTKKSAS-SNNKVVATNRKARHNYTILDTYEAGIVLMGTEVKSLREGQASLADAFATVDD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIWL N +I EY NH PRRNRKLLL +++I L +R +TLVP+ IYF
Sbjct: 60 GEIWLRNVHIAEYHHGTWTNHAPRRNRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD- 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GK+ +DKR+ +RD R+ R L
Sbjct: 119 GKVKVELALARGKQAHDKRQDLARRDAQREVIRELGRR 156
>gi|309810750|ref|ZP_07704557.1| SsrA-binding protein [Dermacoccus sp. Ellin185]
gi|308435287|gb|EFP59112.1| SsrA-binding protein [Dermacoccus sp. Ellin185]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KV+++N+KAR++YHI + EAG+ L GTEVKSLR+ + ++ D Y + E+WL
Sbjct: 3 KEHGTKVIANNKKARHDYHIEETLEAGLSLMGTEVKSLRMGRASLVDGYVLERDGEMWLE 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEYLQ NH RR RKLLL K EI +L + G T+VP+ +YF G AK++
Sbjct: 63 NVHIPEYLQGTWTNHSARRRRKLLLHKAEILKLANKAQSKGYTIVPLSLYFKD-GRAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ALA+GK+ +DKR+T ++R + + R +
Sbjct: 122 IALARGKQLHDKRQTLRERQDNLEAQREM 150
>gi|116333317|ref|YP_794844.1| SsrA-binding protein [Lactobacillus brevis ATCC 367]
gi|122269995|sp|Q03SK9|SSRP_LACBA RecName: Full=SsrA-binding protein
gi|116098664|gb|ABJ63813.1| SsrA-binding protein [Lactobacillus brevis ATCC 367]
Length = 157
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P V++ NRKAR++Y ++ + EAGI LTGTE+KS+R +VN+ D +A N
Sbjct: 1 MAKKKSKKTPDNVLAQNRKARHDYTVLETVEAGIALTGTEIKSVRERRVNLQDGFAQIRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL N +I EY+Q NRFNH P RNRKLLL K+EI RL A G+TLVP+++Y
Sbjct: 61 NEAWLMNVHISEYVQGNRFNHDPLRNRKLLLHKKEIRRLGQATMDKGVTLVPLRMYLK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +AQGK+ +DKRET K+R+ DRQ R+++ +
Sbjct: 120 GFAKVLIGVAQGKREFDKRETIKRREQDRQIARVMKHY 157
>gi|188533118|ref|YP_001906915.1| Small protein B, tmRNA-binding protein [Erwinia tasmaniensis
Et1/99]
gi|238689731|sp|B2VEC0|SSRP_ERWT9 RecName: Full=SsrA-binding protein
gi|188028160|emb|CAO96018.1| Small protein B, tmRNA-binding protein [Erwinia tasmaniensis
Et1/99]
Length = 160
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FE G+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKSHKPGSATIAMNKRARHEYFIEEEFETGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + P + ++ P R+RKLLL KRE+ L RDG T+V + +Y+
Sbjct: 61 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKKRELDTLIGKANRDGYTIVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + LA+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWAKLKIGLAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159
>gi|167628767|ref|YP_001679266.1| ssra-binding protein [Heliobacterium modesticaldum Ice1]
gi|167591507|gb|ABZ83255.1| ssra-binding protein [Heliobacterium modesticaldum Ice1]
Length = 155
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/150 (46%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KV+ +NR+AR++YHI ++EAG+ L GTE+KSLR K N+ D++A EN E+ L N
Sbjct: 3 DGHKVLCENRRARHDYHIDETYEAGMALKGTEIKSLRQGKGNLKDAFARVENGEVLLYNM 62
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I + Q + FNH P R RKLLL + EI +L AA + G+TLVP+++Y +G AK++LA
Sbjct: 63 HISPFEQGHSFNHEPTRTRKLLLHRNEIRKLSAATYQKGLTLVPLRVYLK-RGYAKLELA 121
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKK YDKR+ +RD +R+ R +R+
Sbjct: 122 IARGKKLYDKRDAIARRDAEREMARAMRQR 151
>gi|239930941|ref|ZP_04687894.1| SsrA-binding protein [Streptomyces ghanaensis ATCC 14672]
Length = 159
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLTD 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRREAERAM 150
>gi|126730891|ref|ZP_01746700.1| SsrA-binding protein [Sagittula stellata E-37]
gi|126708607|gb|EBA07664.1| SsrA-binding protein [Sagittula stellata E-37]
Length = 157
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P KV+++NR+ARY+Y I E GI+LTG+EVKSLR + NI++SYA E+
Sbjct: 1 MAKKPDQSPNYKVIAENRRARYDYAIEDDLECGIMLTGSEVKSLRENTSNIAESYAAVED 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y F H RR RKLL SKRE+ RL+ +R GMTLVP+ +YFN K
Sbjct: 61 GELWLVNSYIAPYE-RAMFGHEERRRRKLLASKRELARLWNDTQRKGMTLVPLVLYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G+AKI + +A+GKK DKRETE KRDW RQK R+L++
Sbjct: 120 GIAKIKIGIAKGKKTVDKRETEAKRDWARQKQRLLKQ 156
>gi|293394809|ref|ZP_06639099.1| SsrA-binding protein [Serratia odorifera DSM 4582]
gi|291422560|gb|EFE95799.1| SsrA-binding protein [Serratia odorifera DSM 4582]
Length = 160
Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF +
Sbjct: 1 MTKKKAYKPGSATIAQNKRARFEYFIEDEFEAGLSLQGWEVKSLRAGKANISDSYITFRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R+RKLLL+KRE+ L V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPTRSRKLLLNKRELDSLLGRVNREGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWVKLKIGVAKGKKEHDKRDNIKDREWQTAKARIMKHAN 159
>gi|239981926|ref|ZP_04704450.1| SsrA-binding protein [Streptomyces albus J1074]
gi|291453780|ref|ZP_06593170.1| SsrA-binding protein [Streptomyces albus J1074]
gi|291356729|gb|EFE83631.1| SsrA-binding protein [Streptomyces albus J1074]
Length = 159
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 102/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AKI++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKIEIALAKGKKEYDKRQTLREKQDRREAERAM 150
>gi|163793034|ref|ZP_02187010.1| SsrA-binding protein [alpha proteobacterium BAL199]
gi|159181680|gb|EDP66192.1| SsrA-binding protein [alpha proteobacterium BAL199]
Length = 156
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 78/148 (52%), Positives = 109/148 (73%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
++ V+ NR+AR++Y I + EAG++LTG+EVKSLR + +I ++YA E + L N++I
Sbjct: 8 RREVARNRRARFDYMIEETVEAGLMLTGSEVKSLREGRASIGEAYAGEERGALALINAHI 67
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PEY A FNH PRR R+LL+ +RE RL +RRDG TLVP+ +YFN +G+AK+++ LA
Sbjct: 68 PEYKPAAPFNHEPRRIRRLLVHRRERDRLLGMIRRDGYTLVPVSLYFNDRGIAKLEIGLA 127
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK DKRE KKRDW+RQK RI+RE
Sbjct: 128 RGKKMADKREDSKKRDWERQKARIMREK 155
>gi|325291290|ref|YP_004267471.1| SsrA-binding protein [Syntrophobotulus glycolicus DSM 8271]
gi|324966691|gb|ADY57470.1| SsrA-binding protein [Syntrophobotulus glycolicus DSM 8271]
Length = 156
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/150 (55%), Positives = 112/150 (74%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KV+++NRKAR++Y I ++EAG++LTGTE+KS+R +VN+ DSYA +N E+WL N++
Sbjct: 4 GIKVIAENRKARHDYFIEETYEAGVILTGTEIKSIRGGRVNLKDSYAEIKNREVWLLNTH 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y + NRFNH P R RKLLL+KREI +L A V++ GMTLVP+KIY + GLAKI+L L
Sbjct: 64 ISPYEKGNRFNHDPLRKRKLLLNKREIIKLSAKVQQQGMTLVPIKIYLS-HGLAKIELGL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKKNYDKR+ +D R+ R LRE N
Sbjct: 123 CKGKKNYDKRDDMADKDAKREIERTLRERN 152
>gi|209573994|gb|ACI62935.1| SsrA tmRNA-binding protein SmpB [Acidithiobacillus thiooxidans]
Length = 153
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NR+A+++Y I FEAGIVL G EVKS+R ++N+ DSY ++ E+WL ++I
Sbjct: 4 TIALNREAKHDYFIEERFEAGIVLEGWEVKSMRAGRLNLKDSYVIVKDAELWLLGAHISP 63
Query: 73 -YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ N P R RKLL+ + +I+R+ +V R G T+VP+ +Y+ G AK ++AL +
Sbjct: 64 LLTASTHINPDPTRTRKLLMHREQINRMIGSVERKGFTIVPLAMYWKQ-GRAKAEIALVK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GK+ +DKR T K+R+W R K RI++
Sbjct: 123 GKQEHDKRATIKEREWQRDKARIMK 147
>gi|157371925|ref|YP_001479914.1| SsrA-binding protein [Serratia proteamaculans 568]
gi|166979671|sp|A8GI46|SSRP_SERP5 RecName: Full=SsrA-binding protein
gi|157323689|gb|ABV42786.1| SsrA-binding protein [Serratia proteamaculans 568]
Length = 160
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF +
Sbjct: 1 MTKKKAHKPGSATIAQNKRARFEYAIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ P R RKLLL KRE+ L V RDG T+V + +Y+
Sbjct: 61 GEAYLFGATVSPLNVASSHVVCDPTRTRKLLLKKRELDSLLGRVNRDGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI + +A+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWAKIKIGVAKGKKEHDKRDDIKDREWQTAKSRIMKHAN 159
>gi|302521480|ref|ZP_07273822.1| SsrA-binding protein [Streptomyces sp. SPB78]
gi|318056795|ref|ZP_07975518.1| SsrA-binding protein [Streptomyces sp. SA3_actG]
gi|318077968|ref|ZP_07985300.1| SsrA-binding protein [Streptomyces sp. SA3_actF]
gi|302430375|gb|EFL02191.1| SsrA-binding protein [Streptomyces sp. SPB78]
Length = 160
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYTIIDTYEAGMVLTGTEVKSLRQGRASLVDGFVQIDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL EI +L + + G T++P+ +YF
Sbjct: 57 GEAWLHNVHVPEYSQGTWTNHSARRRRKLLLHAEEIAKLDSKSQETGHTIIPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK ++ALA+GK+ YDKR+T +++ R+ HR +
Sbjct: 116 GRAKCEIALAKGKREYDKRQTLREKQDTREAHRAM 150
>gi|121534531|ref|ZP_01666353.1| SsrA-binding protein [Thermosinus carboxydivorans Nor1]
gi|121306783|gb|EAX47703.1| SsrA-binding protein [Thermosinus carboxydivorans Nor1]
Length = 156
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K+V++NRKAR++YHI ++EAGIVLTGTEVKSLR K N+ DSYA EN E+ L
Sbjct: 3 KGSKIKIVAENRKARHDYHIHETYEAGIVLTGTEVKSLRAGKANLKDSYARIENAEVMLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y Q NRFNH P R RKLLL + EI++L + G TLVP+KIYF +G AK++
Sbjct: 63 NMHISPYEQGNRFNHEPLRTRKLLLHRYEINKLIGKTKEKGYTLVPLKIYFT-RGKAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA GKK YDKRE +RD R+ R LRE
Sbjct: 122 LALASGKKLYDKREDMAERDARREMDRALREK 153
>gi|22126955|ref|NP_670378.1| SsrA-binding protein [Yersinia pestis KIM 10]
gi|45440889|ref|NP_992428.1| SsrA-binding protein [Yersinia pestis biovar Microtus str. 91001]
gi|108806576|ref|YP_650492.1| SsrA-binding protein [Yersinia pestis Antiqua]
gi|108813057|ref|YP_648824.1| SsrA-binding protein [Yersinia pestis Nepal516]
gi|145599861|ref|YP_001163937.1| SsrA-binding protein [Yersinia pestis Pestoides F]
gi|162421221|ref|YP_001605898.1| SsrA-binding protein [Yersinia pestis Angola]
gi|167424217|ref|ZP_02315970.1| SsrA-binding protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|170025202|ref|YP_001721707.1| SsrA-binding protein [Yersinia pseudotuberculosis YPIII]
gi|186894532|ref|YP_001871644.1| SsrA-binding protein [Yersinia pseudotuberculosis PB1/+]
gi|21959996|gb|AAM86629.1|AE013908_12 small protein B [Yersinia pestis KIM 10]
gi|45435747|gb|AAS61305.1| small protein B [Yersinia pestis biovar Microtus str. 91001]
gi|108776705|gb|ABG19224.1| SsrA-binding protein [Yersinia pestis Nepal516]
gi|108778489|gb|ABG12547.1| SsrA-binding protein [Yersinia pestis Antiqua]
gi|145211557|gb|ABP40964.1| SsrA-binding protein [Yersinia pestis Pestoides F]
gi|162354036|gb|ABX87984.1| SsrA-binding protein [Yersinia pestis Angola]
gi|167057066|gb|EDR66829.1| SsrA-binding protein [Yersinia pestis biovar Mediaevalis str.
K1973002]
gi|169751736|gb|ACA69254.1| SsrA-binding protein [Yersinia pseudotuberculosis YPIII]
gi|186697558|gb|ACC88187.1| SsrA-binding protein [Yersinia pseudotuberculosis PB1/+]
gi|262361146|gb|ACY57867.1| SsrA-binding protein [Yersinia pestis D106004]
Length = 164
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK+ DKR+ + R+W K RI++ N
Sbjct: 124 NAWVKVKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 163
>gi|302390351|ref|YP_003826172.1| SsrA-binding protein [Thermosediminibacter oceani DSM 16646]
gi|302200979|gb|ADL08549.1| SsrA-binding protein [Thermosediminibacter oceani DSM 16646]
Length = 155
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 108/159 (67%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + + NRKAR++YHI+ ++EAGIVL GTEVKSLR K N+ DS+A E
Sbjct: 1 MREKKSRD-----LVTNRKARHDYHIIETYEAGIVLAGTEVKSLREGKANLKDSFARVEK 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + N FN P R RKLL+ +REI RLY V+ G+TLVP+++Y N +
Sbjct: 56 GELYLYNMHISPYEKGNIFNKDPLRPRKLLMHRREIDRLYGLVKEKGVTLVPLRVYLNER 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
GL K++LA+A+GK YDKRE K+RD +R+ + +E+N
Sbjct: 116 GLVKVELAVAKGKTLYDKREDIKRRDAEREMEKAFKEYN 154
>gi|15827281|ref|NP_301544.1| SsrA-binding protein [Mycobacterium leprae TN]
gi|221229759|ref|YP_002503175.1| SsrA-binding protein [Mycobacterium leprae Br4923]
gi|3334332|sp|O32881|SSRP_MYCLE RecName: Full=SsrA-binding protein
gi|254778372|sp|B8ZUV3|SSRP_MYCLB RecName: Full=SsrA-binding protein
gi|2326689|emb|CAB11000.1| small protein B [Mycobacterium leprae]
gi|13092830|emb|CAC30180.1| putative SsrA-binding protein [Mycobacterium leprae]
gi|219932866|emb|CAR70765.1| putative SsrA-binding protein [Mycobacterium leprae Br4923]
Length = 160
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ K++V+ NRKAR++Y I+ FEAG+ L GTEVKSLR +++D++AT ++ E
Sbjct: 1 MARNPRGGKQIVATNRKARHDYAIIELFEAGVALLGTEVKSLREGHASLADAFATVDSGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N +IPEY + NH PRRNRKLLL +R+I L +R + LVP+ +YF G
Sbjct: 61 VWLRNMHIPEYQHGSWTNHDPRRNRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFAE-GK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GKK +DKR+ +RD R+ R L
Sbjct: 120 VKVELALARGKKLHDKRQDMARRDAQREVIRELGRR 155
>gi|83311643|ref|YP_421907.1| SsrA-binding protein [Magnetospirillum magneticum AMB-1]
gi|123541718|sp|Q2W477|SSRP_MAGMM RecName: Full=SsrA-binding protein
gi|82946484|dbj|BAE51348.1| tmRNA-binding protein [Magnetospirillum magneticum AMB-1]
Length = 153
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 80/149 (53%), Positives = 107/149 (71%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P V + NR+AR+ Y IV EAGI+L GTEVKSLRV K NI++++A E++L N+Y
Sbjct: 4 PGHVAAQNRRARHEYFIVSEVEAGIMLVGTEVKSLRVGKGNINEAFAGPMQGELFLFNAY 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY F H RR RKLLL KRE+ +L +A+ +DGMTLVP+ I+F +G+AKI L L
Sbjct: 64 IPEYQSKMPFPHETRRPRKLLLHKREMAKLMSAITKDGMTLVPLDIHFGQRGIAKIQLGL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK +DKRE K+RDW+R K R++R+
Sbjct: 124 AKGKKLHDKREAIKERDWNRDKARLMRDK 152
>gi|33152254|ref|NP_873607.1| SsrA-binding protein [Haemophilus ducreyi 35000HP]
gi|38372557|sp|Q7VM64|SSRP_HAEDU RecName: Full=SsrA-binding protein
gi|33148476|gb|AAP95996.1| SsrA-binding protein, small major protein B [Haemophilus ducreyi
35000HP]
Length = 160
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF + E
Sbjct: 1 MAKKPKVPSNTIALNKRARHEYFIEDEIEAGLALQGWEVKSLRAGKANIGDSYVTFRHGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL++RE+ L+ V RDGMT+V + +Y+
Sbjct: 61 AFLFGATITPLNMASTHIVADPTRTRKLLLNQRELDSLFGKVNRDGMTVVALSLYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK +DKRE K R+W K RI++
Sbjct: 120 WAKVKIGLAKGKKLHDKREDIKDREWHVTKQRIMKN 155
>gi|292670374|ref|ZP_06603800.1| SsrA-binding protein [Selenomonas noxia ATCC 43541]
gi|292647966|gb|EFF65938.1| SsrA-binding protein [Selenomonas noxia ATCC 43541]
Length = 157
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N K+ +NRKAR++Y I ++EAG+ L GTEVKSLR + N+ DSYA +N E++L
Sbjct: 3 KRNESVKIACENRKARHDYFIHETYEAGLELVGTEVKSLRAGRANLRDSYAYIKNGELFL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ ++ Y Q N+FNH P R R+LL+ K EI +L+ R GMTLVP+K+YF +G AKI
Sbjct: 63 DHMHVSPYEQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLVPLKVYFK-RGRAKI 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK NYDKR+T + +D R+ + L+
Sbjct: 122 ELALASGKHNYDKRQTLRAKDAKREVEQALKAR 154
>gi|269837012|ref|YP_003319240.1| SsrA-binding protein [Sphaerobacter thermophilus DSM 20745]
gi|269786275|gb|ACZ38418.1| SsrA-binding protein [Sphaerobacter thermophilus DSM 20745]
Length = 160
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 4/161 (2%)
Query: 1 MSLKSRG--NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ + +KVV+ NRKA ++YHI EAGI LTGTE+KS+R +VN+ D+YA
Sbjct: 1 MAKVKAPAASGGEKVVTTNRKAFHDYHIEEELEAGIALTGTEIKSIRAGRVNLRDAYARI 60
Query: 59 ENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
EN E+WL +I Y A F H P R RKLL+ + E++ L V G TLVP+++
Sbjct: 61 ENGELWLIGMHISPYEHAGGYFQHDPDRPRKLLVHRHELNYLRNRVEAKGYTLVPLRLVL 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KGLAK+D+ +A+GKK+YDKR +RD R+ R LR+
Sbjct: 121 R-KGLAKVDIGVARGKKSYDKRAALAERDARREMERALRQR 160
>gi|187611501|sp|Q0VSU5|SSRP_ALCBS RecName: Full=SsrA-binding protein
Length = 159
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M + P ++ NRKAR+ YH+ FEAG+VL G EVKSLR K N++++Y +
Sbjct: 1 MGKANKKAKAPSATIAQNRKARHEYHLEEHFEAGLVLEGWEVKSLRAGKGNLTEAYVLLK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L + + N P R RKLLL +RE+ R++ V++DG T VP+ +Y+
Sbjct: 61 NGEAFLFGARFEPLNTASTHVNPDPTRTRKLLLHRRELGRVFGGVQKDGFTCVPVSLYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG AK D+ALA+GK+ +DKR TEK+RDW+RQK R+LR+
Sbjct: 121 -KGFAKCDIALAKGKQKFDKRATEKERDWNRQKQRVLRQR 159
>gi|167855514|ref|ZP_02478277.1| SsrA-binding protein [Haemophilus parasuis 29755]
gi|167853380|gb|EDS24631.1| SsrA-binding protein [Haemophilus parasuis 29755]
Length = 159
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E
Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L I + P R RKLLL+KRE+ LY V RDG T+V + +Y+
Sbjct: 61 AFLFGGTITPLNVASTHIVCDPTRTRKLLLNKRELDTLYGKVSRDGFTVVALSLYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + LA+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157
>gi|304398638|ref|ZP_07380510.1| SsrA-binding protein [Pantoea sp. aB]
gi|304353849|gb|EFM18224.1| SsrA-binding protein [Pantoea sp. aB]
Length = 160
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P V+ N++AR+ Y I +EAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATVAMNKRARHEYFIEEEYEAGLSLQGWEVKSLRAGKANISDSYILLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S + ++ P R+RKLLL +RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGSTFQPLAVASSHVVCDPTRSRKLLLKQRELDSLYGRVNREGYTIVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR+ K R+W K RI++
Sbjct: 120 NAWCKLKIGVARGKKEHDKRDDIKDREWKLDKARIMKN 157
>gi|292491011|ref|YP_003526450.1| SsrA-binding protein [Nitrosococcus halophilus Nc4]
gi|291579606|gb|ADE14063.1| SsrA-binding protein [Nitrosococcus halophilus Nc4]
Length = 160
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
S K + P ++ NRKAR++Y I +E G+ L G EVKSLR +V +S+SY +
Sbjct: 4 SKKKQSGTPSNTIALNRKARHDYFIEERYEVGLALEGWEVKSLRAGRVQLSESYCLLKGG 63
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL ++I + P R RKLLL E+ +L AV R G LVP+ +Y+ +
Sbjct: 64 EAWLFGAHITPLNTASTHIRPDPLRTRKLLLHSEELRKLIGAVERKGYALVPLALYWK-R 122
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++ALA+GK YDKR E++++W RQK R+L+
Sbjct: 123 GRVKLEIALAKGKHKYDKRAVEREKEWSRQKERLLKIR 160
>gi|183981547|ref|YP_001849838.1| ssRNA-binding protein SmpB [Mycobacterium marinum M]
gi|183174873|gb|ACC39983.1| ssRNA-binding protein SmpB [Mycobacterium marinum M]
Length = 168
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 1 MSLKSRGNP------PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDS 54
M+ +S+ KK+++ NRKAR+NY I+ FEAG+ L GTEVKSLR ++ D+
Sbjct: 1 MAAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLREGHASLVDA 60
Query: 55 YATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
+AT ++ E+WL N +IPEYL NH PRRNRKLLL +R+I L+ +R LVP+
Sbjct: 61 FATVDDGEVWLRNLHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLS 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+YF G K++LALA+GK +DKR+ +RD R+ R L
Sbjct: 121 MYFLD-GKVKVELALARGKHAHDKRQDLARRDAQREVIRELGRR 163
>gi|172038180|ref|YP_001804681.1| SsrA-binding protein [Cyanothece sp. ATCC 51142]
gi|171699634|gb|ACB52615.1| tmRNA-binding protein [Cyanothece sp. ATCC 51142]
Length = 155
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/154 (47%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
N K+VSDNRKAR+ Y I+ ++EAGI L GTEVKS+R +VN++D YA +N E WL
Sbjct: 3 NDNKAIKIVSDNRKARFLYEILETYEAGIELVGTEVKSIRAGRVNLADGYAFIKNGEAWL 62
Query: 66 TNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
TN +I Y + FNH P+R RKLLL ++EI +L + + G+TLVP+K+YF K
Sbjct: 63 TNVHISPYQGSSQYFNHDPKRTRKLLLHRKEISQLIGKIEQKGLTLVPLKLYFKGS-WVK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L L +GKK +DKRET K+R R+ R ++ +
Sbjct: 122 VSLGLGRGKKLHDKRETVKRRQDQREMSRAMKRY 155
>gi|148272491|ref|YP_001222052.1| SsrA-binding protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170782438|ref|YP_001710771.1| SsrA-binding protein [Clavibacter michiganensis subsp. sepedonicus]
gi|166222379|sp|A5CQK2|SSRP_CLAM3 RecName: Full=SsrA-binding protein
gi|189046822|sp|B0RF94|SSRP_CLAMS RecName: Full=SsrA-binding protein
gi|147830421|emb|CAN01356.1| tmRNA (SsrA)-binding protein [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169157007|emb|CAQ02179.1| ssra-binding protein [Clavibacter michiganensis subsp. sepedonicus]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+KVV+ NRKAR++Y I ++EAG+VLTGTEVKSLR + ++ D YA + E WL +
Sbjct: 6 GEKVVATNRKARHDYTIESTYEAGLVLTGTEVKSLRQGRASLVDGYAFVDAGEAWLDAVH 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY Q NH RR RKLLL K +I ++++ V+ G T+VP+++YF G AK++LA+
Sbjct: 66 IPEYNQGTWNNHPVRRKRKLLLHKEQILKIHSKVKEGGYTVVPLQLYFVD-GRAKVELAI 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK YDKR+T ++R R+ R + H
Sbjct: 125 AKGKKEYDKRQTLRERQDKREADRAMSSH 153
>gi|295836898|ref|ZP_06823831.1| SsrA-binding protein [Streptomyces sp. SPB74]
gi|295826260|gb|EDY46068.2| SsrA-binding protein [Streptomyces sp. SPB74]
Length = 160
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYTIIDTYEAGMVLTGTEVKSLRQGRASLVDGFVQIDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL EI +L A + G T++P+ +YF
Sbjct: 57 GEAWLHNVHVPEYSQGTWTNHSARRRRKLLLHADEIAKLDAKSQETGHTIIPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK ++ALA+GK+ YDKR++ +++ R+ HR +
Sbjct: 116 GRAKCEIALAKGKREYDKRQSLREKQDTREAHRAM 150
>gi|254412801|ref|ZP_05026574.1| SsrA-binding protein [Microcoleus chthonoplastes PCC 7420]
gi|196180536|gb|EDX75527.1| SsrA-binding protein [Microcoleus chthonoplastes PCC 7420]
Length = 155
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS +S+ KVV+DNR+AR+ Y I+ ++EAGI L GTEVKS+R S+VN+ D YA N
Sbjct: 1 MSDQSK---GFKVVADNRQARFRYEILETYEAGIELKGTEVKSIRESRVNLRDGYALVRN 57
Query: 61 DEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL N ++ Y ++ FNH P R RKLLL K+EI +L V + G+TLVP+K+Y
Sbjct: 58 GEAWLLNVHVSPYQSSSLYFNHDPVRTRKLLLHKQEISKLVGKVEQQGLTLVPLKMYLK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GL K+ L L +GKK +DKRET K+R +R+ R+++ +
Sbjct: 117 RGLVKVSLGLCKGKKLHDKRETIKRRQDEREMARVVQRY 155
>gi|145299836|ref|YP_001142677.1| SsrA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
gi|187611494|sp|A4SPV7|SSRP_AERS4 RecName: Full=SsrA-binding protein
gi|142852608|gb|ABO90929.1| SsrA-binding protein [Aeromonas salmonicida subsp. salmonicida
A449]
Length = 162
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS K S+ ++ NR AR+ Y I EAG+ L G EVKSLR K NIS++Y F
Sbjct: 1 MSKKNSKNKAGSSTIALNRTARHEYFIEERVEAGLSLQGWEVKSLRAGKANISEAYVIFM 60
Query: 60 NDEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
E +L S ++P ++ P R RKLLLS+ E+ +L + R G T+VP+ +Y+
Sbjct: 61 QGEAFLFGSTFLPLNAASSHVVCDPTRTRKLLLSRHELDKLESLTARQGYTIVPLALYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ L +GKK +DKRE K R+WDR+K RI++
Sbjct: 121 E-CWVKVEIGLVKGKKEHDKREDTKAREWDREKARIMKNK 159
>gi|61216473|sp|Q65SE8|SSRP_MANSM RecName: Full=SsrA-binding protein
Length = 160
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F + E
Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEEELEAGLSLQGWEVKSMRAGKANISDSYIIFRDGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL++RE+ L+ RDG T+V + +Y+
Sbjct: 63 YLFGATIQPLTVASTHVVCDPTRTRKLLLNQRELASLFGKANRDGYTIVALSLYWK-NAW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI + LA+GK+ +DKR K R+W QK RI++ N
Sbjct: 122 AKIKIGLAKGKQQHDKRNDIKDREWKMQKERIMKNAN 158
>gi|289209216|ref|YP_003461282.1| SsrA-binding protein [Thioalkalivibrio sp. K90mix]
gi|288944847|gb|ADC72546.1| SsrA-binding protein [Thioalkalivibrio sp. K90mix]
Length = 159
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M + + ++ NRKAR+++ I EAG+ L G EVKS+R + +S++Y
Sbjct: 1 MGKPNKKKDAGSNTIALNRKARHDFFIEDRLEAGLELQGWEVKSMRAGRAQLSEAYVLLR 60
Query: 60 NDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
E +L ++I + N P R RKLLL + EI+RL AV R G TLVPM +Y+
Sbjct: 61 KGEAFLFGAHITPLPTASTHINPDPSRTRKLLLHRSEINRLIGAVERKGYTLVPMALYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+G AK+++ LA+GKK+YDKR +K +DW R++ RIL+
Sbjct: 121 -RGRAKLEIGLAKGKKDYDKRAAKKDKDWQRERARILK 157
>gi|83593199|ref|YP_426951.1| ssrA-binding protein [Rhodospirillum rubrum ATCC 11170]
gi|123526510|sp|Q2RT81|SSRP_RHORT RecName: Full=SsrA-binding protein
gi|83576113|gb|ABC22664.1| SsrA-binding protein [Rhodospirillum rubrum ATCC 11170]
Length = 160
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 76/159 (47%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ V++NR+AR++Y I + EAG++L GTEVKSLR + NI+DSYA ++
Sbjct: 1 MARAGNSLISHGRVAENRRARHDYSIEETIEAGLILVGTEVKSLRTGRANIADSYAGPKS 60
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L N+YIP++ QA F H PR+ RKLL+ +RE RL +A+ +DGMTLVP+ +YFN
Sbjct: 61 GELYLYNAYIPDWTQAVKAFAHEPRQPRKLLVHRREARRLISAINKDGMTLVPLYLYFND 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AK+ L LA+G+K +DKR+ K+R+W+R K R+LR+
Sbjct: 121 RGFAKVQLGLAKGRKAHDKRQAIKEREWNRDKARVLRDK 159
>gi|307155334|ref|YP_003890718.1| SsrA-binding protein [Cyanothece sp. PCC 7822]
gi|306985562|gb|ADN17443.1| SsrA-binding protein [Cyanothece sp. PCC 7822]
Length = 155
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S N K++SDNR+AR+ Y I+ ++EAGI LTGTEVKS+R ++N+ D YA N E W
Sbjct: 2 SNQNGKTKLISDNRQARFLYEILETYEAGIELTGTEVKSIRAGRINLKDGYALIRNGEAW 61
Query: 65 LTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I Y FNH PRR RKLLL ++EI++L V + G+TLVP+K+YF
Sbjct: 62 LINVHISPYEASGQYFNHDPRRTRKLLLHRKEINKLIGQVEQKGLTLVPLKMYFKDS-WI 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ + L QGKK +DKRET K+R +R+ R ++ +
Sbjct: 121 KVSIGLGQGKKLHDKRETLKRRQDEREMQRAMKRY 155
>gi|56964766|ref|YP_176497.1| SsrA-binding protein [Bacillus clausii KSM-K16]
gi|56911009|dbj|BAD65536.1| ssrA RNA (tmRNA)-binding protein [Bacillus clausii KSM-K16]
Length = 161
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y I +FEAGIVLTGTE+KS+R K+N+ DS+A +N E +L N++I
Sbjct: 13 KVVAQNKKARHDYFIEETFEAGIVLTGTEIKSIRAGKMNLKDSFARIKNGEAFLYNAHIS 72
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY Q NR+NH P R RKLLL K++I+ L ++ G ++VP+K+Y G AK+ + LA+
Sbjct: 73 EYEQGNRYNHEPTRPRKLLLHKKQINTLIGQTQQKGYSIVPLKVYIK-NGFAKVLIGLAK 131
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKNYDKRET +++D R+ R ++E
Sbjct: 132 GKKNYDKRETLRRKDAKREVERAIKER 158
>gi|52425560|ref|YP_088697.1| SsrA-binding protein [Mannheimia succiniciproducens MBEL55E]
gi|52307612|gb|AAU38112.1| SmpB protein [Mannheimia succiniciproducens MBEL55E]
Length = 163
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F + E
Sbjct: 6 KKKVKPGSNTIALNKRARHDYFIEEELEAGLSLQGWEVKSMRAGKANISDSYIIFRDGEA 65
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL++RE+ L+ RDG T+V + +Y+
Sbjct: 66 YLFGATIQPLTVASTHVVCDPTRTRKLLLNQRELASLFGKANRDGYTIVALSLYWK-NAW 124
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI + LA+GK+ +DKR K R+W QK RI++ N
Sbjct: 125 AKIKIGLAKGKQQHDKRNDIKDREWKMQKERIMKNAN 161
>gi|255019962|ref|ZP_05292036.1| tmRNA-binding protein SmpB [Acidithiobacillus caldus ATCC 51756]
gi|209574074|gb|ACI62975.1| SsrA tmRNA-binding protein SmpB [Acidithiobacillus caldus]
gi|254970621|gb|EET28109.1| tmRNA-binding protein SmpB [Acidithiobacillus caldus ATCC 51756]
Length = 153
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NR+A++ Y I FEAGI L G EVKSLR ++N+ DSY + E+WL ++I
Sbjct: 4 TIALNREAKHEYFIEERFEAGIALEGWEVKSLRAGRLNLKDSYVVVKQGELWLLGAHISP 63
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ + P R RKLL+ + EI+RL A+ R G T+VP+ +Y+ A G AK+++AL +
Sbjct: 64 LTTASTHIHPDPTRTRKLLMHRLEINRLIGAIERKGYTVVPLAMYWKA-GRAKVEIALVK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GK+ +DKR + K+R+W R K RIL+
Sbjct: 123 GKQAHDKRASIKEREWQRDKARILK 147
>gi|218439012|ref|YP_002377341.1| SsrA-binding protein [Cyanothece sp. PCC 7424]
gi|226734250|sp|B7KF17|SSRP_CYAP7 RecName: Full=SsrA-binding protein
gi|218171740|gb|ACK70473.1| SsrA-binding protein [Cyanothece sp. PCC 7424]
Length = 155
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S N K+++DNR+AR+ Y I+ ++EAGI LTGTEVKS+R ++N+ D YA N E W
Sbjct: 2 SNQNGKTKLITDNRQARFLYEILETYEAGIELTGTEVKSIRAGRINLKDGYALIRNGEAW 61
Query: 65 LTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I Y FNH PRR RKLLL ++EI++L V + G+TLVP+K+YF
Sbjct: 62 LINVHISPYEASGQYFNHDPRRTRKLLLHRKEINKLIGQVEQKGLTLVPLKMYFKDS-WV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + LAQGKK +DKRET K+R +R R ++
Sbjct: 121 KVSIGLAQGKKLHDKRETLKRRQDERDMQRAMKR 154
>gi|159042703|ref|YP_001531497.1| SsrA-binding protein [Dinoroseobacter shibae DFL 12]
gi|187611496|sp|A8LKQ3|SSRP_DINSH RecName: Full=SsrA-binding protein
gi|157910463|gb|ABV91896.1| SsrA-binding protein [Dinoroseobacter shibae DFL 12]
Length = 160
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 81/159 (50%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K+ KV+++NR+AR Y I E GIVL G+EVKSLR NI++SYAT +
Sbjct: 1 MAKPKTPEEKNYKVIAENRRARREYAIEEDLEVGIVLEGSEVKSLREGGSNIAESYATVD 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E+WL NSYI Y QA + H RR RKLL+S+RE+ RL+ A +R GMTLVP+ +YFN
Sbjct: 61 DGELWLVNSYIAPYAQAKTWKHEERRRRKLLVSRRELSRLWNATQRQGMTLVPLVMYFNH 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GL K+ + +A+GKK DKR+T+ KRDW+RQK R+L+++
Sbjct: 121 RGLVKLKIGVAKGKKLADKRQTDAKRDWNRQKQRLLKQN 159
>gi|46201890|ref|ZP_00054157.2| COG0691: tmRNA-binding protein [Magnetospirillum magnetotacticum
MS-1]
Length = 153
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 79/149 (53%), Positives = 107/149 (71%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P V + NR+AR+ Y IV EAGI+L GTEVKSLRV K NI++++A E++L N+Y
Sbjct: 4 PGHVAAQNRRARHEYFIVSEVEAGIMLVGTEVKSLRVGKGNINEAFAGPMQGELYLFNAY 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY F H RR RKLLL KRE+ +L +A+ +DGMTLVP+ I+F +G+AK+ L L
Sbjct: 64 IPEYQSKMPFPHETRRPRKLLLHKREMAKLMSAIAKDGMTLVPLDIHFAQRGIAKVQLGL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK +DKRE K+RDW+R K R++R+
Sbjct: 124 AKGKKLHDKREAIKERDWNRDKARLMRDK 152
>gi|192358965|ref|YP_001983816.1| SsrA-binding protein [Cellvibrio japonicus Ueda107]
gi|226734248|sp|B3PF48|SSRP_CELJU RecName: Full=SsrA-binding protein
gi|190685130|gb|ACE82808.1| SsrA-binding protein [Cellvibrio japonicus Ueda107]
Length = 159
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 106/158 (67%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K++ ++ N+KA+++Y + FEAG+ LTG EVKSLR K NI+D Y F+N
Sbjct: 1 MAKKNQ-KSGSNTIALNKKAKFDYELHERFEAGLALTGWEVKSLRAGKGNITDCYVIFKN 59
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E WL I P + F P RNRKLLL++REI+RL AV + G T+VP+ +Y+ A
Sbjct: 60 NEAWLQACQIQPLLSASTHFVTDPFRNRKLLLNRREINRLQEAVEQKGYTVVPIALYWKA 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ K ++A+A+GK+ +DKR+TEK+RDW+R+K R+ +
Sbjct: 120 H-MVKCEIAIAKGKQLHDKRQTEKERDWEREKQRLFQR 156
>gi|152978554|ref|YP_001344183.1| SsrA-binding protein [Actinobacillus succinogenes 130Z]
gi|171704243|sp|A6VMQ1|SSRP_ACTSZ RecName: Full=SsrA-binding protein
gi|150840277|gb|ABR74248.1| SsrA-binding protein [Actinobacillus succinogenes 130Z]
Length = 160
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F N
Sbjct: 1 MAKK-KNKAGDNTIALNKRARHDYFIEEEIEAGLSLQGWEVKSMRAGKANISDSYVIFNN 59
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL++RE+ L+ RDG TLV + +Y+
Sbjct: 60 GEAFLFGATIQPLSVASTHVVCDPTRTRKLLLNERELASLFGKANRDGYTLVALSLYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK +DKRE K R+W QK RI++
Sbjct: 119 NAWAKLKIGLAKGKKQHDKREDIKDREWKVQKDRIMKN 156
>gi|184200581|ref|YP_001854788.1| SsrA-binding protein [Kocuria rhizophila DC2201]
gi|183580811|dbj|BAG29282.1| SsrA-binding protein [Kocuria rhizophila DC2201]
Length = 162
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 111/160 (69%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ + +++V++N+KAR++Y I+ ++EAG+ L GTEVKSLR+ + ++ D++ F+N
Sbjct: 1 MAKKN-ADDGRQIVANNKKARHDYAILDTYEAGLALMGTEVKSLRMGRASLVDAFCQFDN 59
Query: 61 D-EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL +++IPEYLQ + NH RR RKLLL + E+ ++ R G T++P+ +YF
Sbjct: 60 RGELWLEHAHIPEYLQGSWTNHSARRRRKLLLHRAELDKIAGKTREAGYTIIPLSLYFVD 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++A+A+GK+ YDKR+T +++ +R+ R +R N
Sbjct: 120 GKRVKVEIAVARGKREYDKRQTLREKQDNREAQRAMRYRN 159
>gi|114763731|ref|ZP_01443125.1| SsrA-binding protein [Pelagibaca bermudensis HTCC2601]
gi|114543732|gb|EAU46745.1| SsrA-binding protein [Roseovarius sp. HTCC2601]
Length = 156
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P KV+++NR+AR++Y I E GIVLTG+EVKSLR + NI++SYA E+
Sbjct: 1 MA-KPKTDPNYKVIAENRRARFDYAIEDDLEVGIVLTGSEVKSLRENTSNIAESYAAVED 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y F H RR RKLL+SK+E+ RL+ +R GMT+VP+ +YFN K
Sbjct: 60 GELWLVNSYIAPYE-RAMFGHEERRRRKLLVSKKELARLWNETQRKGMTIVPLVLYFNHK 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G+AK+ + +A+GKKN+DKRETE KRDW+RQK R+L++
Sbjct: 119 GIAKMKVGIAKGKKNHDKRETEAKRDWNRQKQRLLKQ 155
>gi|126664864|ref|ZP_01735848.1| SsrA-binding protein [Marinobacter sp. ELB17]
gi|126631190|gb|EBA01804.1| SsrA-binding protein [Marinobacter sp. ELB17]
Length = 190
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K G ++ N+KA++ YHI FEAG+ L G EVKS+R K ++DSY +
Sbjct: 32 MSKKKPGTSSS-TIALNKKAKHEYHIDDRFEAGLSLLGWEVKSMRAGKTQLTDSYVLLKG 90
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++I + P R RKLLL +EI ++ +V ++G T +P+ +Y+
Sbjct: 91 GEAWLLGTHITPLTTASTHVIADPTRTRKLLLHAKEIAKIVDSVGQEGRTCIPLALYWK- 149
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K K ++AL +GKK +DKR TEK+RDW+RQK R+LRE N
Sbjct: 150 KNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRVLREAN 189
>gi|322834147|ref|YP_004214174.1| SsrA-binding protein [Rahnella sp. Y9602]
gi|321169348|gb|ADW75047.1| SsrA-binding protein [Rahnella sp. Y9602]
Length = 160
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKS+R K NI+DSY TF +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYIIEDEFEAGLALQGWEVKSMRAGKANITDSYVTFRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L+ V RDG T+V + +Y+
Sbjct: 61 GEAFLFGATIQPLNVASTHIVCDPTRTRKLLLNKRELETLFGKVSRDGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+K+ + LA+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWSKVKIGLAKGKKEHDKRDDIKDREWKVDKARIMKHAN 159
>gi|304316668|ref|YP_003851813.1| SsrA-binding protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
gi|302778170|gb|ADL68729.1| SsrA-binding protein [Thermoanaerobacterium thermosaccharolyticum
DSM 571]
Length = 155
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 75/152 (49%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ KV++ N+KA ++Y I +EAGIVL GTEVKS+R+ KVN+ DS+A EN+E++L
Sbjct: 2 TSENIKVLAQNKKASHDYFIDEVYEAGIVLFGTEVKSVRMGKVNLKDSFARIENNEVFLY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + N FN P R RKLLL++REI++L V + G TLVP+++Y GL KI+
Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRREINKLTGYVTQKGYTLVPLRVYLK-HGLVKIE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+A+GKK YDKRE KRD R+ R +E
Sbjct: 121 LAVARGKKLYDKREDIAKRDAKREIERHFKEK 152
>gi|254462276|ref|ZP_05075692.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2083]
gi|206678865|gb|EDZ43352.1| SsrA-binding protein [Rhodobacteraceae bacterium HTCC2083]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + NP KV+++NR+ARY+Y I E GI+L G+EVKSLRV+ N+++SYA ++
Sbjct: 1 MA-KPKDNPNYKVIAENRRARYDYAIQDDIECGIILQGSEVKSLRVNSANVAESYAEVKD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y A + H RR RKLL SK+E+ +++ +R GMTLVP+ +YFN K
Sbjct: 60 GELWLVNSYIAPYEAAKTWGHEERRRRKLLASKKELAGMWSDTQRKGMTLVPLVLYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ + +A+GK+N+DKR ++ KRDW RQK R+LR
Sbjct: 120 GFVKLKIGIAKGKQNHDKRASDAKRDWGRQKQRLLRH 156
>gi|16331042|ref|NP_441770.1| SsrA-binding protein [Synechocystis sp. PCC 6803]
gi|2498928|sp|P74355|SSRP_SYNY3 RecName: Full=SsrA-binding protein
gi|1653537|dbj|BAA18450.1| small protein [Synechocystis sp. PCC 6803]
Length = 154
Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ KVVSDNR+AR+ Y I+ ++EAGI L GTEVKS+R KVN+ D +A + E+W
Sbjct: 2 AKEKERIKVVSDNRQARFLYEILETYEAGIELQGTEVKSIRAGKVNLRDGFALLRDGEVW 61
Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I Y +++ FNH PRR R+LL+ EI +L V + G+TLVP+K+YF
Sbjct: 62 LMNVHISPYDKSSLFFNHDPRRTRRLLMHNWEIRKLIGQVEQKGLTLVPLKMYFKGS-WV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ L L +GKK +DKRET K+R DR R ++
Sbjct: 121 KVALGLGKGKKLHDKRETLKRRQDDRDMARAMKR 154
>gi|240168640|ref|ZP_04747299.1| SsrA-binding protein [Mycobacterium kansasii ATCC 12478]
Length = 168
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
+ + +K+++ NRKAR+NY I+ FEAG+ L GTEVKSLR ++ D++AT ++
Sbjct: 8 AKAAGKKIGRKIIATNRKARHNYSIIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDG 67
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
EIWL N +IPEY + NH PRRNRKLLL +R+I L +R LVP+ +YF G
Sbjct: 68 EIWLRNLHIPEYQHGSWTNHEPRRNRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTE-G 126
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GK +DKR+ +RD R+ R L
Sbjct: 127 KVKVEIALARGKHAHDKRQDLARRDAQREVIRELGRR 163
>gi|219870882|ref|YP_002475257.1| SsrA-binding protein [Haemophilus parasuis SH0165]
gi|254778363|sp|B8F4Q7|SSRP_HAEPS RecName: Full=SsrA-binding protein
gi|219691086|gb|ACL32309.1| SsrA-binding protein [Haemophilus parasuis SH0165]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E
Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L I + P R RKLLL+KRE+ LY V RDG T+V + +Y+
Sbjct: 61 AFLFGGTITPLNVASTHIVCDPTRTRKLLLNKRELDTLYGKVSRDGFTVVALSLYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + LA+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157
>gi|290476151|ref|YP_003469051.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus
bovienii SS-2004]
gi|289175484|emb|CBJ82287.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus
bovienii SS-2004]
Length = 160
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISESYVLLRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ +L + I ++ P R+RKLLL+KRE+ LY V R+G T+V + +Y+
Sbjct: 61 GDAYLFGATITPLNVASSHIVCDPTRSRKLLLNKRELDSLYGRVNREGYTIVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWSKVKIGVAKGKKAHDKRSDIKEREWKVDKARIMKN 157
>gi|118443378|ref|YP_877500.1| SsrA-binding protein [Clostridium novyi NT]
gi|166222383|sp|A0PYP8|SSRP_CLONN RecName: Full=SsrA-binding protein
gi|118133834|gb|ABK60878.1| SsrA-binding protein [Clostridium novyi NT]
Length = 157
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + N ++ NRKA ++Y I +FEAGI L GTEVKS+R K N+ DSYA+ N
Sbjct: 1 MGKKDKKN---NTLAQNRKAYHDYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIRN 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N ++ Y Q N FN P R RKLLL K +I+ L + G TL+P+ +Y
Sbjct: 58 GEVFVCNMHVSPYEQGNIFNRDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLK-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKKNYDKR+ + R R ++E
Sbjct: 117 GRVKVALGVAKGKKNYDKRDAIAAKAAKRDIDRQMKER 154
>gi|51595479|ref|YP_069670.1| SsrA-binding protein [Yersinia pseudotuberculosis IP 32953]
gi|149366899|ref|ZP_01888933.1| SsrA-binding protein (small protein B) [Yersinia pestis CA88-4125]
gi|153948403|ref|YP_001401856.1| SsrA-binding protein [Yersinia pseudotuberculosis IP 31758]
gi|165924594|ref|ZP_02220426.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165938351|ref|ZP_02226909.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. IP275]
gi|166011588|ref|ZP_02232486.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. E1979001]
gi|166211539|ref|ZP_02237574.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|167419901|ref|ZP_02311654.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|218928269|ref|YP_002346144.1| SsrA-binding protein [Yersinia pestis CO92]
gi|229841036|ref|ZP_04461195.1| trans-translation protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229843140|ref|ZP_04463286.1| trans-translation protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229893978|ref|ZP_04509164.1| trans-translation protein [Yersinia pestis Pestoides A]
gi|229903498|ref|ZP_04518611.1| trans-translation protein [Yersinia pestis Nepal516]
gi|294503110|ref|YP_003567172.1| SsrA-binding protein [Yersinia pestis Z176003]
gi|22096165|sp|Q8ZH14|SSRP_YERPE RecName: Full=SsrA-binding protein
gi|61216481|sp|Q66DB4|SSRP_YERPS RecName: Full=SsrA-binding protein
gi|166979672|sp|A7FKS8|SSRP_YERP3 RecName: Full=SsrA-binding protein
gi|187631668|sp|Q1CAH5|SSRP_YERPA RecName: Full=SsrA-binding protein
gi|187631669|sp|Q1CFK6|SSRP_YERPN RecName: Full=SsrA-binding protein
gi|187631670|sp|A4TNV2|SSRP_YERPP RecName: Full=SsrA-binding protein
gi|51588761|emb|CAH20375.1| SsrA-binding protein (small protein B) [Yersinia pseudotuberculosis
IP 32953]
gi|115346880|emb|CAL19767.1| SsrA-binding protein (small protein B) [Yersinia pestis CO92]
gi|149291273|gb|EDM41348.1| SsrA-binding protein (small protein B) [Yersinia pestis CA88-4125]
gi|152959898|gb|ABS47359.1| SsrA-binding protein [Yersinia pseudotuberculosis IP 31758]
gi|165913729|gb|EDR32348.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. IP275]
gi|165923654|gb|EDR40786.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str.
F1991016]
gi|165989536|gb|EDR41837.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. E1979001]
gi|166207310|gb|EDR51790.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str.
B42003004]
gi|166962642|gb|EDR58663.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str.
MG05-1020]
gi|229679268|gb|EEO75371.1| trans-translation protein [Yersinia pestis Nepal516]
gi|229689487|gb|EEO81548.1| trans-translation protein [Yersinia pestis biovar Orientalis str.
India 195]
gi|229697402|gb|EEO87449.1| trans-translation protein [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229703863|gb|EEO90876.1| trans-translation protein [Yersinia pestis Pestoides A]
gi|262365300|gb|ACY61857.1| SsrA-binding protein [Yersinia pestis D182038]
gi|294353569|gb|ADE63910.1| SsrA-binding protein [Yersinia pestis Z176003]
gi|320014240|gb|ADV97811.1| trans-translation protein [Yersinia pestis biovar Medievalis str.
Harbin 35]
Length = 160
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N
Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+
Sbjct: 61 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK+ DKR+ + R+W K RI++ N
Sbjct: 120 NAWVKVKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 159
>gi|261820277|ref|YP_003258383.1| SsrA-binding protein [Pectobacterium wasabiae WPP163]
gi|261604290|gb|ACX86776.1| SsrA-binding protein [Pectobacterium wasabiae WPP163]
Length = 160
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K N+SDSY TF
Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYSIEEEFEAGLALQGWEVKSLRAGKANLSDSYVTFMK 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R RKLLL+KRE+ L+ V RDG T+V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKRELDSLFGRVSRDGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+K+ + +A+GKK++DKR+ K+R+W K RI++ N
Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKVDKARIMKNAN 159
>gi|158317534|ref|YP_001510042.1| SsrA-binding protein [Frankia sp. EAN1pec]
gi|238686847|sp|A8L8M0|SSRP_FRASN RecName: Full=SsrA-binding protein
gi|158112939|gb|ABW15136.1| SsrA-binding protein [Frankia sp. EAN1pec]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K+++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL
Sbjct: 3 KETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY + NH PRR RKLLL + EI +L R G+T+VP+ +YF G AK++
Sbjct: 63 NVHIPEYTEGTWTNHAPRRRRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKD-GRAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ALA+G+KNYDKR +RD R+ RI+
Sbjct: 122 IALARGRKNYDKRHALAERDAAREMSRIM 150
>gi|288923240|ref|ZP_06417380.1| SsrA-binding protein [Frankia sp. EUN1f]
gi|288345414|gb|EFC79803.1| SsrA-binding protein [Frankia sp. EUN1f]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K+++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL
Sbjct: 3 KETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY + NH PRR RKLLL + EI +L + G+TLVP+ +YF G AK++
Sbjct: 63 NVHIPEYTEGTWTNHAPRRRRKLLLHRAEIEKLIGKTQEGGLTLVPLSLYFKD-GRAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ALA+G+K YDKR +RD R+ RI+
Sbjct: 122 VALARGRKTYDKRHALAERDAAREMSRIM 150
>gi|92115216|ref|YP_575144.1| SsrA-binding protein [Chromohalobacter salexigens DSM 3043]
gi|122419116|sp|Q1QSW3|SSRP_CHRSD RecName: Full=SsrA-binding protein
gi|91798306|gb|ABE60445.1| SsrA-binding protein [Chromohalobacter salexigens DSM 3043]
Length = 157
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +GN ++ N+KAR+ YHI +FEAG+ L G EVKSLR K ++D+Y +N
Sbjct: 1 MAKK-KGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL ++EI ++++ + G T VP+K+Y+
Sbjct: 60 GEAWLLGSHITPLNTVSTHVVADPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K L K +LAL +GKK +DKR TEK RDW+R+K RI+R H
Sbjct: 119 KNLVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH 157
>gi|323526468|ref|YP_004228621.1| SsrA-binding protein [Burkholderia sp. CCGE1001]
gi|323383470|gb|ADX55561.1| SsrA-binding protein [Burkholderia sp. CCGE1001]
Length = 148
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK+LR + I + Y +N E++L ++I
Sbjct: 3 IIDNRKAFFDYSIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNGELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKLHDKRETEKKRDWEREKARLMR 145
>gi|170077965|ref|YP_001734603.1| SsrA-binding protein [Synechococcus sp. PCC 7002]
gi|169885634|gb|ACA99347.1| SsrA-binding protein [Synechococcus sp. PCC 7002]
Length = 155
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 98/153 (64%), Gaps = 2/153 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
P K++SDNRKAR+ Y I+ + EAGI L GTEVKS+R KVN+ D Y N+E WL
Sbjct: 4 TKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEAWLL 63
Query: 67 NSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y FNH P+R+RKLLL ++EI RL + + G+TL+P+K+Y L K+
Sbjct: 64 NVHISPYTASGQYFNHEPKRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGS-LVKV 122
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L L +GKK +DKRET K+R R+ R L+ +
Sbjct: 123 SLGLGRGKKLHDKRETIKRRQDSREMARALKRY 155
>gi|158334110|ref|YP_001515282.1| SsrA-binding protein [Acaryochloris marina MBIC11017]
gi|187611489|sp|B0BZP2|SSRP_ACAM1 RecName: Full=SsrA-binding protein
gi|158304351|gb|ABW25968.1| SsrA-binding protein [Acaryochloris marina MBIC11017]
Length = 154
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 99/151 (65%), Gaps = 2/151 (1%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ KV+SDNR+AR+ Y I+ FEAG+ LTGTEVKS+R KVN+ D +A N+E +L N
Sbjct: 2 SESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLLN 61
Query: 68 SYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
++ + A FNH PRR RKLL+ ++EI +L + G+TLVP+K+Y +G K+
Sbjct: 62 VHVSPHTNAGQFFNHDPRRTRKLLMHRQEIRKLIGKTEQKGLTLVPLKLYL-QRGWIKVT 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ LA+GKK +DKRE+ KKR R R L+
Sbjct: 121 IGLARGKKLHDKRESIKKRQDKRDMERALKR 151
>gi|302551789|ref|ZP_07304131.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302469407|gb|EFL32500.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 159
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + +++D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLADGFIQMDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRAEIDKLESKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRRETERAI 150
>gi|228910936|ref|ZP_04074745.1| hypothetical protein bthur0013_50780 [Bacillus thuringiensis IBL
200]
gi|228848887|gb|EEM93732.1| hypothetical protein bthur0013_50780 [Bacillus thuringiensis IBL
200]
Length = 190
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 42 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 101
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 102 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 160
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R+ R+
Sbjct: 161 GKKQYDKRHDLKEKEAKREIARVFRDR 187
>gi|228955357|ref|ZP_04117363.1| hypothetical protein bthur0006_47130 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228804304|gb|EEM50917.1| hypothetical protein bthur0006_47130 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 190
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 42 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 101
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 102 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 160
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R R+
Sbjct: 161 GKKQYDKRHDLKEKEAKREIARAFRDR 187
>gi|269215849|ref|ZP_06159703.1| SsrA-binding protein [Slackia exigua ATCC 700122]
gi|269130799|gb|EEZ61875.1| SsrA-binding protein [Slackia exigua ATCC 700122]
Length = 161
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 95/149 (63%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK ++ NR+A ++Y I+ +FEAGIVL+GTEV SLR + ++D++A + E WL +I
Sbjct: 12 KKPIAKNRRAFHDYEIIETFEAGIVLSGTEVCSLRENNCQLTDTFALIRHGEAWLHGLHI 71
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
P Y N N P R RKLLL +R+I L R GM +VP+ +YF+A G K+++A+A
Sbjct: 72 PPYSHGNIANREPDRVRKLLLHRRQIRYLEQKTRDAGMAIVPISVYFDANGRVKVEIAVA 131
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKR +RD R+ R ++ +
Sbjct: 132 RGKKLYDKRAAMAERDSKREIERAMKVRS 160
>gi|125975230|ref|YP_001039140.1| SsrA-binding protein [Clostridium thermocellum ATCC 27405]
gi|256003108|ref|ZP_05428100.1| SsrA-binding protein [Clostridium thermocellum DSM 2360]
gi|281419204|ref|ZP_06250220.1| SsrA-binding protein [Clostridium thermocellum JW20]
gi|187611478|sp|A3DJ18|SSRP_CLOTH RecName: Full=SsrA-binding protein
gi|125715455|gb|ABN53947.1| SsrA-binding protein [Clostridium thermocellum ATCC 27405]
gi|255992799|gb|EEU02889.1| SsrA-binding protein [Clostridium thermocellum DSM 2360]
gi|281407070|gb|EFB37332.1| SsrA-binding protein [Clostridium thermocellum JW20]
gi|316939394|gb|ADU73428.1| SsrA-binding protein [Clostridium thermocellum DSM 1313]
Length = 154
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 109/158 (68%), Gaps = 6/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + +VV+ NRKAR++Y I ++ EAGIVL+GTEVKS+R KV++ DSYA +N
Sbjct: 1 MAKEEK-----RVVAQNRKARHDYFIEQTIEAGIVLSGTEVKSIRAGKVSLKDSYANVKN 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y Q N FN P R+RKLLL + EI++L +++ GMTLVP+++YF
Sbjct: 56 GEVFIYGMHISPYEQGNIFNKDPLRDRKLLLHRAEINKLIGYIQQKGMTLVPLEVYFK-N 114
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G KI+L +A+GKK YDKRE KRD R+ R L+E+
Sbjct: 115 GKVKIELGIAKGKKLYDKREDIAKRDALREIDRRLKEN 152
>gi|325001485|ref|ZP_08122597.1| SsrA-binding protein [Pseudonocardia sp. P1]
Length = 161
Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KV++ NR+AR++Y I+ FEAG+ L GTEVKSLR+ + +++D++AT ++ EI+L
Sbjct: 2 KEQGRKVIAQNRRARHDYSILDVFEAGVALKGTEVKSLRLGRASMADAFATIDDGEIFLR 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY++ + NH PRR RKLLL + EI RL R G+TLVP+ +YFN G K +
Sbjct: 62 GLHIPEYVRGSWTNHEPRRTRKLLLHREEIDRLMGKTREGGLTLVPLSLYFND-GKVKCE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ALA+GKK+YDKR K+D R+ R +
Sbjct: 121 IALARGKKDYDKRRDLAKKDAQREMARAV 149
>gi|21221411|ref|NP_627190.1| SsrA-binding protein [Streptomyces coelicolor A3(2)]
gi|256787405|ref|ZP_05525836.1| SsrA-binding protein [Streptomyces lividans TK24]
gi|289771305|ref|ZP_06530683.1| SsrA-binding protein [Streptomyces lividans TK24]
gi|22096180|sp|Q9L1S9|SSRP_STRCO RecName: Full=SsrA-binding protein
gi|6911996|emb|CAB72212.1| small protein B homologue [Streptomyces coelicolor A3(2)]
gi|289701504|gb|EFD68933.1| SsrA-binding protein [Streptomyces lividans TK24]
Length = 159
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VL+GTEVKSLR + +++D + +
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYQILDTYEAGLVLSGTEVKSLRQGRASLADGFVQLDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRVEIDKLESKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALARGKKEYDKRQTLREKQDRREAERTI 150
>gi|117618958|ref|YP_855981.1| SsrA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|187611493|sp|A0KI80|SSRP_AERHH RecName: Full=SsrA-binding protein
gi|117560365|gb|ABK37313.1| SsrA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 162
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 3/160 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS K S+ ++ NR AR+ Y I EAG+ L G EVKSLR K NIS++Y F
Sbjct: 1 MSKKNSKNKAGSNTIALNRSARHEYFIEEKIEAGLSLQGWEVKSLRAGKANISEAYVIFR 60
Query: 60 NDEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +L S++P ++ P R RKLLLS+RE+ +L + + R G T+VP+ +Y+
Sbjct: 61 DGEAYLFGSSFLPLQAASSHVVCDPTRTRKLLLSRRELDKLESLIARQGYTVVPLALYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ L +GKK +DKRE K R+WDR+K RI++
Sbjct: 121 Q-CWVKVEIGLVKGKKEHDKREDTKAREWDREKARIMKNK 159
>gi|330828890|ref|YP_004391842.1| SsrA-binding protein [Aeromonas veronii B565]
gi|328804026|gb|AEB49225.1| SsrA-binding protein [Aeromonas veronii B565]
Length = 162
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 3/160 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS K S+ ++ NR AR+ Y I EAG+ L G EVKSLR K NIS++Y F
Sbjct: 1 MSKKNSKNKAGSSTIALNRTARHEYFIEEKIEAGLSLQGWEVKSLRAGKANISEAYVIFR 60
Query: 60 NDEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +L S++P ++ P R RKLLLS+RE+ +L + + R G T+VP+ +Y+
Sbjct: 61 DGEAYLFGSSFLPLQAASSHVVCDPTRTRKLLLSRRELDKLESLIARQGYTIVPLALYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ L +GKK +DKRE K R+WDR+K RI++
Sbjct: 121 Q-CWVKVEIGLVKGKKEHDKREDTKAREWDREKARIMKNK 159
>gi|257465420|ref|ZP_05629791.1| SsrA-binding protein [Actinobacillus minor 202]
gi|257451080|gb|EEV25123.1| SsrA-binding protein [Actinobacillus minor 202]
Length = 159
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF + +
Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRDGQ 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL++RE+ L+ V RDGMT+V + +Y+ A
Sbjct: 61 AFLFGATITPLNVASTHIVADPTRTRKLLLNRRELDSLFGKVNRDGMTVVALSLYWKA-A 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKIGVAKGKKLHDKREDIKDREWQLAKQRIMKNAN 157
>gi|302534755|ref|ZP_07287097.1| SsrA-binding protein [Streptomyces sp. C]
gi|302443650|gb|EFL15466.1| SsrA-binding protein [Streptomyces sp. C]
Length = 161
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++E GIVLTGTEVKSLR + ++ D + + E
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYAIIDTYECGIVLTGTEVKSLRQGRASLVDGFVSVEG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ N ++PEY Q NH RR RKLL+ + EI +L G T+VP+ +YF
Sbjct: 57 REVWMYNVHVPEYSQGTWTNHSARRKRKLLMHREEIDKLERKAEESGHTVVPLSLYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDTRETQRAI 150
>gi|25027370|ref|NP_737424.1| SsrA-binding protein [Corynebacterium efficiens YS-314]
gi|259506491|ref|ZP_05749393.1| SsrA-binding protein [Corynebacterium efficiens YS-314]
gi|29336731|sp|Q8FRE7|SSRP_COREF RecName: Full=SsrA-binding protein
gi|23492651|dbj|BAC17624.1| putative SsrA-binding protein [Corynebacterium efficiens YS-314]
gi|259165911|gb|EEW50465.1| SsrA-binding protein [Corynebacterium efficiens YS-314]
Length = 164
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 2/159 (1%)
Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + + +V++ NRKAR++Y I+ ++EAG+VL GTE+KSLR K ++ D++A +
Sbjct: 1 MAKKKKKVDENNQVLATNRKARHDYQILDTWEAGVVLLGTEIKSLREGKASLVDAFAVID 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E+WL N +IP Y + NH P+R RKLLL +REI L VR TLVP+K+Y
Sbjct: 61 NGEVWLHNLHIPTYSMGSWTNHSPKRTRKLLLHRREIDSLMGKVRDGNRTLVPLKLYL-V 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++L LAQGK++YDKR+ K+R +R+ R L
Sbjct: 120 NGRVKLELGLAQGKQDYDKRQDIKRRTEEREVTRELGRR 158
>gi|290968526|ref|ZP_06560065.1| SsrA-binding protein [Megasphaera genomosp. type_1 str. 28L]
gi|290781522|gb|EFD94111.1| SsrA-binding protein [Megasphaera genomosp. type_1 str. 28L]
Length = 156
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ K +++NRKAR++Y I ++EAGI LTGTEVKSLR +VN+ DS+ E E+W
Sbjct: 2 AKPKSGIKYIAENRKARHDYFIHDTYEAGIALTGTEVKSLRCGRVNVKDSFCRLEGGEVW 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L +I Y Q NRFNH P R RKLLL K EI +L V+ G TL+P+ +YF KG K
Sbjct: 62 LEAMHISPYEQGNRFNHDPLRTRKLLLHKYEILKLIGKVKEKGYTLIPLNLYFK-KGRVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +AL GKK YDKR+ +++ R+ R L+E
Sbjct: 121 VTVALVTGKKLYDKRQASAEKEAKREMDRRLKER 154
>gi|302344577|ref|YP_003809106.1| SsrA-binding protein [Desulfarculus baarsii DSM 2075]
gi|301641190|gb|ADK86512.1| SsrA-binding protein [Desulfarculus baarsii DSM 2075]
Length = 151
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K+++ NRKAR+NY + FEAG+VLTGTEVKSLR+ K ++ D+YA +N E+WL N
Sbjct: 4 TGVKIIAVNRKARFNYELGDRFEAGMVLTGTEVKSLRLGKASLVDAYAKIKNGELWLVNC 63
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I Y A NH P R RKLLL KREI +L + + G +L+P+ +YF G AK++LA
Sbjct: 64 QIQAYPFAYYDNHEPTRQRKLLLHKREIAKLASKTQEQGNSLIPLALYFK-NGRAKVELA 122
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GKK +DKR + K+RD R+ R LR
Sbjct: 123 LAKGKKLHDKRASIKERDQQREMERALRR 151
>gi|269792417|ref|YP_003317321.1| SsrA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589]
gi|269100052|gb|ACZ19039.1| SsrA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589]
Length = 151
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 96/148 (64%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+VV+ NRKAR++Y I+ + E G+VLTGTE+KSLR +VN+ D YAT ++ E+WL +I
Sbjct: 4 DRVVAQNRKARHDYFILDTLEVGMVLTGTEIKSLREGRVNLKDGYATVKDGELWLLGVHI 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + + +N P R RKLL SK EI +L +R G+TLVP+KIY AK++L +A
Sbjct: 64 APYEKGSYYNVDPERPRKLLASKGEILKLSQRIREKGLTLVPLKIYIKGNRWAKVELGIA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKR+ ++ R+ R ++
Sbjct: 124 KGKALHDKRDALAEKQAKREMERAIKSR 151
>gi|15644629|ref|NP_228068.1| SsrA-binding protein [Thermotoga maritima MSB8]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 106/145 (73%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F+N E++L N +IP
Sbjct: 11 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIP 70
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y +NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+
Sbjct: 71 PYSHGGVYNHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVAR 130
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK YDKRE KKR+ +R+ ++
Sbjct: 131 GKKKYDKREAIKKREMERKIREYMK 155
>gi|126726153|ref|ZP_01741995.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2150]
gi|126705357|gb|EBA04448.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2150]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 114/159 (71%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ +P K++++NR+ARY+Y I E G++L G+EVKS+R NI++SYA E
Sbjct: 1 MA-NTKSDPNYKIIAENRRARYDYAIEDDIECGVILMGSEVKSMRNGGSNIAESYAAVEE 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSY+ Y QA + H +R RKL++SKRE+ +L+ A R GMTLVP+ +YFN K
Sbjct: 60 GELWLVNSYVAPYEQAKTWGHLEKRRRKLMVSKRELSKLWQATGRQGMTLVPLVMYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G KI L +A+GKKN DKR+TE KRDW RQK RI+++++
Sbjct: 120 GRVKIKLGIAKGKKNVDKRQTEAKRDWGRQKARIMKQNS 158
>gi|304438604|ref|ZP_07398543.1| SsrA-binding protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304368442|gb|EFM22128.1| SsrA-binding protein [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 157
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N ++ +NRKAR++Y I ++EAG+ L GTEVKSLR K N+ DSYA +N E++L
Sbjct: 3 KKNDGVRIACENRKARHDYFIHETYEAGMELVGTEVKSLRAGKANLRDSYAYIKNGEVFL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF G AK+
Sbjct: 63 DHMHISPYDQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-HGRAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK NYDKR++ K++ R+ + L+
Sbjct: 122 ELALASGKHNYDKRQSLKEKAAKREVEQALKSR 154
>gi|228975191|ref|ZP_04135749.1| hypothetical protein bthur0003_49380 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228784470|gb|EEM32491.1| hypothetical protein bthur0003_49380 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
Length = 190
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 42 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 101
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 102 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 160
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R+ R+
Sbjct: 161 GKKQYDKRHDLKEKEAKREIARVFRDR 187
>gi|284989799|ref|YP_003408353.1| SsrA-binding protein [Geodermatophilus obscurus DSM 43160]
gi|284063044|gb|ADB73982.1| SsrA-binding protein [Geodermatophilus obscurus DSM 43160]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K+++ N+KAR++Y I+ ++E G+VLTGTEVKSLR + ++ D +AT + E+WL + +
Sbjct: 6 GRKLIAQNKKARHDYSILDTYEVGLVLTGTEVKSLRAGRASLVDGFATVDGGEVWLQHVH 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY + NH PRR RK+L+ + EI +L + G+TLVP+ +YF G K LAL
Sbjct: 66 IPEYAEGTWTNHAPRRKRKVLMHRAEIDKLIGKTKEGGLTLVPLDLYFKD-GKVKATLAL 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GK++YDKR+ +RD R+ R +
Sbjct: 125 AKGKRSYDKRQDLAERDSRREIQRAFGRY 153
>gi|256824895|ref|YP_003148855.1| SsrA-binding protein [Kytococcus sedentarius DSM 20547]
gi|256688288|gb|ACV06090.1| SsrA-binding protein [Kytococcus sedentarius DSM 20547]
Length = 167
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%)
Query: 1 MSLKSRG---NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ K + +P KVV+ NRKAR++Y I ++EAG+ LTGTEVKSLR+ + ++ D YAT
Sbjct: 1 MATKKKQAKDDPRNKVVATNRKARHDYIIEDTYEAGLALTGTEVKSLRMGRASLVDGYAT 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
N E++L N +IPEYL + NH RR RK+LL + E+ +L G T+VP+++YF
Sbjct: 61 DRNGELFLENVHIPEYLNGSWTNHSARRKRKMLLHRHELDKLIGKSNEAGHTIVPLRLYF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G K+++ALA+GKK YDKR +++ +R+K +
Sbjct: 121 KD-GRVKVEIALAKGKKQYDKRHALREKQDEREKQAQM 157
>gi|147679047|ref|YP_001213262.1| SsrA-binding protein [Pelotomaculum thermopropionicum SI]
gi|187629766|sp|A5CYM8|SSRP_PELTS RecName: Full=SsrA-binding protein
gi|146275144|dbj|BAF60893.1| tmRNA-binding protein [Pelotomaculum thermopropionicum SI]
Length = 153
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV++NR+AR+ YHI+ +FEAG+ L GTEVKSLR K ++ DS+A EN E+ L N +I
Sbjct: 4 KVVTENRRARHEYHILETFEAGLALRGTEVKSLRAGKASLQDSFARVENGELLLYNMHIS 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N+FNH P+R R+LL+ K EI RL R G+ L+P+K+YF GLAKI+LALA+
Sbjct: 64 PYEQGNQFNHEPKRTRRLLMHKYEILRLMGKTREKGLALIPLKVYFK-NGLAKIELALAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YD+RE RD R+ R ++E
Sbjct: 123 GKKIYDRREDIASRDARREIDRAIKER 149
>gi|240949609|ref|ZP_04753944.1| SsrA-binding protein [Actinobacillus minor NM305]
gi|240295867|gb|EER46543.1| SsrA-binding protein [Actinobacillus minor NM305]
Length = 159
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF + +
Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEVEAGLELQGWEVKSLRAGKANIGDSYVTFRDGQ 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL++RE+ L+ V RDGMT+V + +Y+ A
Sbjct: 61 AFLFGATITPLNVASTHIVADPTRTRKLLLNRRELDSLFGKVNRDGMTVVALSLYWKA-A 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKIGVAKGKKLHDKREDIKDREWQLAKQRIMKNAN 157
>gi|213966063|ref|ZP_03394251.1| SsrA-binding protein [Corynebacterium amycolatum SK46]
gi|213951261|gb|EEB62655.1| SsrA-binding protein [Corynebacterium amycolatum SK46]
Length = 167
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ VV+ NR+AR++Y+I+ ++E G+VL GTEVK+LR K +++D++AT ++ E+WL
Sbjct: 12 SANNAVVATNRRARHDYNILDTYECGVVLVGTEVKALREGKASLNDAFATIDDGEVWLRG 71
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+IPEY + NH PRR+RKLLL ++EI L+ VR TLVP+K+YF G K++L
Sbjct: 72 LHIPEYSYGSWTNHSPRRSRKLLLHRKEIDTLWGKVRDGNNTLVPLKLYFT-NGRLKVEL 130
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
ALA+GK++YDKR+ K+R +R+ R L
Sbjct: 131 ALARGKQDYDKRQDIKRRTEEREATRALGRR 161
>gi|77164705|ref|YP_343230.1| SsrA-binding protein [Nitrosococcus oceani ATCC 19707]
gi|254434040|ref|ZP_05047548.1| SsrA-binding protein [Nitrosococcus oceani AFC27]
gi|123594509|sp|Q3JBU6|SSRP_NITOC RecName: Full=SsrA-binding protein
gi|76883019|gb|ABA57700.1| SsrA-binding protein [Nitrosococcus oceani ATCC 19707]
gi|207090373|gb|EDZ67644.1| SsrA-binding protein [Nitrosococcus oceani AFC27]
Length = 189
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 62/148 (41%), Positives = 96/148 (64%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ NRKAR++Y I +EAG+VL G EVKSLR +V +++ Y + E+WL ++
Sbjct: 14 NVIALNRKARHDYFIEERYEAGLVLEGWEVKSLRAGRVQLNEGYCLLKGGEVWLFGVHLS 73
Query: 72 EYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ + P R RKLLL +E+ +L AV R G L+P+ +Y+ +G K+++ALA
Sbjct: 74 PLNTVSTHIHPDPLRTRKLLLHAKELRKLIGAVERKGYALIPLTLYWK-RGRVKLEIALA 132
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ YDKR TEK+++W RQK R+L+ H
Sbjct: 133 KGKQKYDKRATEKEKEWTRQKERLLKVH 160
>gi|152977347|ref|YP_001376864.1| SsrA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98]
gi|189046817|sp|A7GUR1|SSRP_BACCN RecName: Full=SsrA-binding protein
gi|152026099|gb|ABS23869.1| SsrA-binding protein [Bacillus cytotoxicus NVH 391-98]
Length = 155
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+K++R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKAFHDYFIDETYEAGLVLQGTEIKAIRAGRVNLKDAFARVHNGEVWVHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L + G TLVP+KIY G AK+ L
Sbjct: 63 MHISPYEQGNRFNHDPLRTRKLLLHKKEIQKLVGYTKETGYTLVPLKIYLK-NGFAKMAL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R R+
Sbjct: 122 GLARGKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|161830789|ref|YP_001597155.1| SsrA-binding protein [Coxiella burnetii RSA 331]
gi|189046825|sp|A9N8I5|SSRP_COXBR RecName: Full=SsrA-binding protein
gi|161762656|gb|ABX78298.1| SsrA-binding protein [Coxiella burnetii RSA 331]
Length = 159
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F+
Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKG 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +++ A P+R+RKLLL+K EI +L+ AV++ G+T+VP+ ++++
Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKPEIGKLFGAVQKQGLTVVPLDLHWHK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H
Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158
>gi|78356135|ref|YP_387584.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
gi|123552909|sp|Q313K7|SSRP_DESDG RecName: Full=SsrA-binding protein
gi|78218540|gb|ABB37889.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. G20]
Length = 155
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + +++ N+KAR+ Y ++ FEAGI L GTEVKSLR +V+ +DSY T N+E
Sbjct: 1 MTKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
W+ +I Y A H P R+RKLLL REI L A V + G+T+VP+K+YF
Sbjct: 61 AWIVGMHIAPYANAGYVQHDPDRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFK-NSR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++A+ +GKK +DKR+ K+RD +R+ R + H
Sbjct: 120 VKLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH 155
>gi|56421578|ref|YP_148896.1| SsrA-binding protein [Geobacillus kaustophilus HTA426]
gi|261420482|ref|YP_003254164.1| SsrA-binding protein [Geobacillus sp. Y412MC61]
gi|319768153|ref|YP_004133654.1| SsrA-binding protein [Geobacillus sp. Y412MC52]
gi|61216397|sp|Q5KVF8|SSRP_GEOKA RecName: Full=SsrA-binding protein
gi|56381420|dbj|BAD77328.1| ssrA RNA (tmRNA)-binding protein [Geobacillus kaustophilus HTA426]
gi|261376939|gb|ACX79682.1| SsrA-binding protein [Geobacillus sp. Y412MC61]
gi|317113019|gb|ADU95511.1| SsrA-binding protein [Geobacillus sp. Y412MC52]
Length = 155
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I
Sbjct: 7 KVIAQNKKAHHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+R+ R+ R RE
Sbjct: 126 GKKKYDKREDMKRREAQREIERAFRER 152
>gi|226939707|ref|YP_002794780.1| SmpB [Laribacter hongkongensis HLHK9]
gi|226714633|gb|ACO73771.1| SmpB [Laribacter hongkongensis HLHK9]
Length = 150
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 58/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ +N+KA ++Y I FEAG+VL G EVKS+R +V + + Y + WL +I
Sbjct: 3 IIENKKAFHDYFIEERFEAGLVLEGWEVKSIRAGRVQLKEGYVVLIDGAFWLIGCHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL++++I RL V R G TL+P+ +++ A G K+++ LA+G
Sbjct: 63 PTASTHIHPDPTRRRKLLLARKQIDRLIGKVERAGYTLMPLNLHYKA-GWIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRE+EK+R+W R+K RI+++
Sbjct: 122 KKQHDKRESEKEREWQREKQRIIKD 146
>gi|89071040|ref|ZP_01158254.1| SsrA-binding protein [Oceanicola granulosus HTCC2516]
gi|89043399|gb|EAR49617.1| SsrA-binding protein [Oceanicola granulosus HTCC2516]
Length = 156
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 92/158 (58%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS GN KVV++NR+ARY+Y I E GIVLTG+EVKSLR + NI+DSYA +
Sbjct: 1 MA-KSDGNKNYKVVAENRRARYDYAIEDDLEVGIVLTGSEVKSLRTGQSNIADSYAEVDG 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WLTN+YI Y QA F H RR RKLL SKRE+ RL+ A +R GMTLVP+ +YFN +
Sbjct: 60 GELWLTNAYIAPYTQAM-FPHEERRRRKLLASKREVARLWNATQRQGMTLVPLVMYFNDR 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ K+ +A A+GKK DKR TE KRDW RQK R+L+EH
Sbjct: 119 GIVKLKVATAKGKKTQDKRATEAKRDWSRQKQRLLKEH 156
>gi|169349587|ref|ZP_02866525.1| hypothetical protein CLOSPI_00324 [Clostridium spiroforme DSM 1552]
gi|169293662|gb|EDS75795.1| hypothetical protein CLOSPI_00324 [Clostridium spiroforme DSM 1552]
Length = 150
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 104/147 (70%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++S+N+KA ++Y I+ ++EAGI L GTE+KS+R+ VN+ D++ +++E ++ N +I
Sbjct: 4 KIISNNKKAYHDYFILDTYEAGIELKGTEIKSVRLGNVNLKDAFVRIKDNEAFVENMHIS 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y NRFNH PRRNRKLLL K+EI ++ ++ G+T+VP K+YFN K+++ LA+
Sbjct: 64 PYSHGNRFNHEPRRNRKLLLHKKEILKISNKLKEGGLTVVPTKLYFNTGSKVKLEIGLAR 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR+ K+RD R+ R L+ +
Sbjct: 124 GKKLYDKRQDIKERDSKREIQRALKNY 150
>gi|126657217|ref|ZP_01728383.1| SsrA-binding protein [Cyanothece sp. CCY0110]
gi|126621488|gb|EAZ92199.1| SsrA-binding protein [Cyanothece sp. CCY0110]
Length = 155
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
N K+VSDNRKAR+ Y I+ ++EAGI L GTEVKS+R +VN++D YA +N E WL
Sbjct: 3 NDNKAIKIVSDNRKARFLYEILETYEAGIELVGTEVKSIRAGRVNLADGYAFIKNGEAWL 62
Query: 66 TNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
TN +I Y + FNH P+R RKLLL +++I +L + + G+TLVP+K+YF K
Sbjct: 63 TNVHISPYQGSSQYFNHDPKRTRKLLLHRKQISQLIGKIEQKGLTLVPLKLYFKGS-WVK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L L +GKK +DKRET K+R R+ R ++
Sbjct: 122 VGLGLGRGKKLHDKRETVKRRQDQREISRAMKRF 155
>gi|50085928|ref|YP_047438.1| SsrA-binding protein [Acinetobacter sp. ADP1]
gi|61216505|sp|Q6F8J9|SSRP_ACIAD RecName: Full=SsrA-binding protein
gi|49531904|emb|CAG69616.1| ssrA-binding protein (Small protein B) [Acinetobacter sp. ADP1]
Length = 158
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 7/159 (4%)
Query: 1 MSLK---SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
MS + N ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY
Sbjct: 1 MSKAVVVKKNNGG--TIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYII 58
Query: 58 FENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
F+N E +L + I P ++ R RKLLLS+REI +L AV + G + VP+ Y
Sbjct: 59 FKNGEAYLFGAQIQPLLTASSHVVPEATRTRKLLLSRREIGQLLGAVNQKGYSCVPLACY 118
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ L K+++AL +GK+ +DKR TEK RDW R K RI+
Sbjct: 119 WKGH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIM 156
>gi|260771338|ref|ZP_05880264.1| tmRNA-binding protein SmpB [Vibrio furnissii CIP 102972]
gi|260613654|gb|EEX38847.1| tmRNA-binding protein SmpB [Vibrio furnissii CIP 102972]
gi|315180938|gb|ADT87852.1| SsrA-binding protein [Vibrio furnissii NCTC 11218]
Length = 162
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
KS ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY +
Sbjct: 3 KKKSNTKAGSNTIALNKKARHEYFIEDEIEAGMELQGWEVKSLRQGKANIAESYVFLRDG 62
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL+ +Y++ +
Sbjct: 63 EAFISGMTITPLQQASTHVVANPTRVRKLLLSRRELDNLFGRINREGMTLIATALYWS-R 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + +A+GKK +DKR+ K++DW RQK R+++ +N
Sbjct: 122 SWVKIKIGVAKGKKLHDKRDDLKEKDWQRQKARVMKSNN 160
>gi|323359622|ref|YP_004226018.1| tmRNA-binding protein [Microbacterium testaceum StLB037]
gi|323275993|dbj|BAJ76138.1| tmRNA-binding protein [Microbacterium testaceum StLB037]
Length = 158
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 105/150 (70%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K+++ N+KAR++Y I +++EAG+VLTGTEVKSLR + N++D YA + + +L +
Sbjct: 6 GEKLIASNKKARHDYAIEKTYEAGLVLTGTEVKSLRQGRANLTDGYAYIDGGQAYLDAVH 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY Q + NH +R RKLLL K EI +L AV G TLVP+++YF G AK+++A+
Sbjct: 66 IPEYSQGHWTNHSAKRTRKLLLHKEEIVKLSHAVAAGGYTLVPLRLYFLD-GRAKVEIAV 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GK+ ++KR+T ++R+ R+ R +R N
Sbjct: 125 AKGKREFEKRQTIREREDKREAERAMRTKN 154
>gi|229032740|ref|ZP_04188700.1| hypothetical protein bcere0028_47730 [Bacillus cereus AH1271]
gi|228728567|gb|EEL79583.1| hypothetical protein bcere0028_47730 [Bacillus cereus AH1271]
Length = 191
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 39 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 98
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L
Sbjct: 99 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLTGASKETGYALVPVRIYLK-NGFAKMAL 157
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R R+
Sbjct: 158 GLAKGKKQYDKRNDLKEKEAKREIARAFRDR 188
>gi|303239052|ref|ZP_07325582.1| SsrA-binding protein [Acetivibrio cellulolyticus CD2]
gi|302593390|gb|EFL63108.1| SsrA-binding protein [Acetivibrio cellulolyticus CD2]
Length = 154
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 110/159 (69%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +++ K ++ N+KAR++Y I +FEAGIVL+GTEVKS+R KV+I DSYA ++
Sbjct: 1 MAKEAK-----KTIAQNKKARHDYFIEETFEAGIVLSGTEVKSIRQGKVSIKDSYAIIKS 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E+++ ++ Y Q N FN P R+RKLL+ + EI++L ++++ GM+LVP+++YF
Sbjct: 56 EEVFIFGMHVSPYEQGNIFNKDPLRDRKLLMHRYEINKLIGSIQQKGMSLVPIELYFR-N 114
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K++L L +GKK YDKRE K+D R+ R ++E N
Sbjct: 115 GKVKLELGLGKGKKLYDKREDIAKKDAMREIDRRMKESN 153
>gi|61216431|sp|Q5WDM4|SSRP_BACSK RecName: Full=SsrA-binding protein
Length = 156
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y I +FEAGIVLTGTE+KS+R K+N+ DS+A +N E +L N++I
Sbjct: 8 KVVAQNKKARHDYFIEETFEAGIVLTGTEIKSIRAGKMNLKDSFARIKNGEAFLYNAHIS 67
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY Q NR+NH P R RKLLL K++I+ L ++ G ++VP+K+Y G AK+ + LA+
Sbjct: 68 EYEQGNRYNHEPTRPRKLLLHKKQINTLIGQTQQKGYSIVPLKVYIK-NGFAKVLIGLAK 126
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKNYDKRET +++D R+ R ++E
Sbjct: 127 GKKNYDKRETLRRKDAKREVERAIKER 153
>gi|163848849|ref|YP_001636893.1| SsrA-binding protein [Chloroflexus aurantiacus J-10-fl]
gi|222526804|ref|YP_002571275.1| SsrA-binding protein [Chloroflexus sp. Y-400-fl]
gi|187611475|sp|A9WJ45|SSRP_CHLAA RecName: Full=SsrA-binding protein
gi|254778352|sp|B9LD60|SSRP_CHLSY RecName: Full=SsrA-binding protein
gi|163670138|gb|ABY36504.1| SsrA-binding protein [Chloroflexus aurantiacus J-10-fl]
gi|222450683|gb|ACM54949.1| SsrA-binding protein [Chloroflexus sp. Y-400-fl]
Length = 160
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +P VV++NRKAR++Y I + EAGIVL+G+E+KS+R +VN+ S+A +
Sbjct: 1 MTATKHKHPG--VVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVID 58
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DE++L +++I Y Q+ FNH P R RKLLL +REI+RL VR GMTLVP+K+YF
Sbjct: 59 DEVFLYDAHIAPYEQSGKYFNHDPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKG 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ AK++L +A+GKK YDKRE +RD R R L+
Sbjct: 119 R-RAKVELGVARGKKIYDKREDIARRDAARDIDRALKR 155
>gi|19552031|ref|NP_600033.1| SsrA-binding protein [Corynebacterium glutamicum ATCC 13032]
gi|62389694|ref|YP_225096.1| SsrA-binding protein [Corynebacterium glutamicum ATCC 13032]
gi|145294964|ref|YP_001137785.1| SsrA-binding protein [Corynebacterium glutamicum R]
gi|23822164|sp|Q8NS75|SSRP_CORGL RecName: Full=SsrA-binding protein
gi|166223213|sp|A4QCD6|SSRP_CORGB RecName: Full=SsrA-binding protein
gi|21323570|dbj|BAB98197.1| tmRNA-binding protein [Corynebacterium glutamicum ATCC 13032]
gi|41325029|emb|CAF19510.1| SMALL PROTEIN B HOMOLOGUE [Corynebacterium glutamicum ATCC 13032]
gi|140844884|dbj|BAF53883.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 164
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 2/159 (1%)
Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + + V++ NRKAR++YHI+ ++EAG+VL GTE+KSLR KV++ DS+AT +
Sbjct: 1 MAKKKKKVDENNSVLATNRKARHDYHIIDTWEAGVVLLGTEIKSLREGKVSLVDSFATID 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N EIWL + +IP+Y + NH P+R RKLLL + EI L VR TLVP+K+Y
Sbjct: 61 NGEIWLQHLHIPQYSMGSWTNHTPKRTRKLLLHRNEIDSLMGKVRDGNRTLVPLKLYLK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++L LAQGK++YDKR+ K+R +R+ R L
Sbjct: 120 NGRVKLELGLAQGKQDYDKRQDIKRRTEEREVTRELGRR 158
>gi|67921052|ref|ZP_00514571.1| SmpB protein [Crocosphaera watsonii WH 8501]
gi|67857169|gb|EAM52409.1| SmpB protein [Crocosphaera watsonii WH 8501]
Length = 155
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 2/154 (1%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
N K++SDNRKAR+ Y I+ ++EAGI L GTEVKS+R +VN++D YA ++ E WL
Sbjct: 3 NENKATKIISDNRKARFLYEILETYEAGIELVGTEVKSIRAGRVNLADGYAFIKDGEAWL 62
Query: 66 TNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
TN +I Y + FNH P+R RKLLL ++EI++L + + G+TLVP+K+YF K
Sbjct: 63 TNVHISPYQGSSQYFNHEPKRTRKLLLHRKEINQLIGKIEQKGLTLVPLKLYFKGS-RVK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ + L +GKK +DKRET K+R R+ R ++ +
Sbjct: 122 VGIGLGKGKKLHDKRETVKRRQDQREMSRAMKRY 155
>gi|307245731|ref|ZP_07527817.1| hypothetical protein appser1_9340 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307254702|ref|ZP_07536530.1| hypothetical protein appser9_9420 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259144|ref|ZP_07540874.1| hypothetical protein appser11_9420 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
gi|306853433|gb|EFM85652.1| hypothetical protein appser1_9340 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862375|gb|EFM94341.1| hypothetical protein appser9_9420 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866811|gb|EFM98669.1| hypothetical protein appser11_9420 [Actinobacillus pleuropneumoniae
serovar 11 str. 56153]
Length = 159
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E
Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+
Sbjct: 61 AFLFGATITPLNMASTHIVCDPTRTRKLLLNKRELDSLFGKVNRDGMTIVALSLYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKVGIAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157
>gi|237747548|ref|ZP_04578028.1| tmRNA-binding protein small potein B [Oxalobacter formigenes
OXCC13]
gi|229378910|gb|EEO29001.1| tmRNA-binding protein small potein B [Oxalobacter formigenes
OXCC13]
Length = 149
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I FEAG+ L G EVKS+R +V + ++Y + EI+L ++I
Sbjct: 2 TIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKGVEIFLFGAHISP 61
Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R+RKLL+ EI +L V R G TLVP+ ++F+ KG K ++ LA+
Sbjct: 62 LPTASTHIKPDPVRDRKLLMHADEISKLIGKVERAGYTLVPLNMHFS-KGRIKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRETEK+RDW R++ +I++++
Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQN 147
>gi|317124431|ref|YP_004098543.1| SsrA-binding protein [Intrasporangium calvum DSM 43043]
gi|315588519|gb|ADU47816.1| SsrA-binding protein [Intrasporangium calvum DSM 43043]
Length = 159
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ +V+ NRKAR++YHI +FEAGIVL+GTEVK+LR+ + ++ D +A F DE++L
Sbjct: 3 KEKGRSLVASNRKARHDYHIEDTFEAGIVLSGTEVKALRMGRASLVDGFAMFTGDELYLE 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEYL NH PRR RKLLL + E+ ++ R G T+VP+ +YF G AK++
Sbjct: 63 NVHIPEYLNGTWNNHAPRRKRKLLLHRSELEKISGKTRESGRTIVPLALYFKD-GRAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+A+A GKK YDKR ++R R+ R +
Sbjct: 122 IAIATGKKQYDKRHALRERQDQRETARAM 150
>gi|77919420|ref|YP_357235.1| SsrA-binding protein [Pelobacter carbinolicus DSM 2380]
gi|123573991|sp|Q3A3J2|SSRP_PELCD RecName: Full=SsrA-binding protein
gi|77545503|gb|ABA89065.1| SsrA-binding protein [Pelobacter carbinolicus DSM 2380]
Length = 150
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 62/149 (41%), Positives = 95/149 (63%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K++++N+KA ++Y I EAG+VL GTEVKSLR+ K N+ D++ E+++ N +
Sbjct: 2 GIKIIANNKKAYHDYFIDEVLEAGMVLLGTEVKSLRLGKANLKDAFCRIMGGELYVNNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR N P R RKLL+ + E+ +L V G++LVP K+YF G KI++ +
Sbjct: 62 ISPYEFGNRENADPTRARKLLVHRAELDKLARKVDEKGLSLVPTKLYFKE-GRVKIEIGI 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK +DKR+T K ++ DR+ R LR+
Sbjct: 121 ARGKKLHDKRQTLKSKEADREMARALRDR 149
>gi|300863928|ref|ZP_07108843.1| SsrA-binding protein [Oscillatoria sp. PCC 6506]
gi|300338048|emb|CBN53989.1| SsrA-binding protein [Oscillatoria sp. PCC 6506]
Length = 159
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 75/160 (46%), Positives = 111/160 (69%), Gaps = 3/160 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS KS + + K++SDNR+AR+ Y I+ +++ GI L GTEVKS+R KVN+ D YA
Sbjct: 1 MSEKSEKKSEGYKIISDNRQARFLYEILETYQVGIELKGTEVKSIREGKVNLRDGYALVR 60
Query: 60 NDEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E+WL N++I + +A+ FNH PRR RKLL+ K+EI +L V + G+TLVP+K+YF
Sbjct: 61 NGEVWLINAHISPWGKASDYFNHDPRRTRKLLMHKQEIRKLLGKVEQQGLTLVPLKMYFK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ G K+D+AL +GKK +DKR++ K+RD R R +++
Sbjct: 121 S-GWVKLDIALGKGKKLHDKRDSIKERDDKRSIERAMKQF 159
>gi|148269806|ref|YP_001244266.1| SsrA-binding protein [Thermotoga petrophila RKU-1]
gi|170288492|ref|YP_001738730.1| SsrA-binding protein [Thermotoga sp. RQ2]
gi|8134712|sp|P56944|SSRP_THEMA RecName: Full=SsrA-binding protein
gi|166223470|sp|A5IKG7|SSRP_THEP1 RecName: Full=SsrA-binding protein
gi|238688822|sp|B1L9P9|SSRP_THESQ RecName: Full=SsrA-binding protein
gi|147735350|gb|ABQ46690.1| SsrA-binding protein [Thermotoga petrophila RKU-1]
gi|170175995|gb|ACB09047.1| SsrA-binding protein [Thermotoga sp. RQ2]
Length = 150
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 76/145 (52%), Positives = 106/145 (73%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F+N E++L N +IP
Sbjct: 3 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIP 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y +NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+
Sbjct: 63 PYSHGGVYNHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVAR 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK YDKRE KKR+ +R+ ++
Sbjct: 123 GKKKYDKREAIKKREMERKIREYMK 147
>gi|20807465|ref|NP_622636.1| SsrA-binding protein [Thermoanaerobacter tengcongensis MB4]
gi|22096157|sp|Q8RB39|SSRP_THETN RecName: Full=SsrA-binding protein
gi|20515991|gb|AAM24240.1| tmRNA-binding protein [Thermoanaerobacter tengcongensis MB4]
Length = 158
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ K+++ NRKA ++Y I ++EAGI L GTEVKS+R KVN+ DS+A EN+E+
Sbjct: 2 SKEKEEIKIIAQNRKAFHDYFIEETYEAGIELVGTEVKSVRQGKVNLKDSFARVENNEVI 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y + N FN P R RKLLL + EI++L V R G TL+P K+Y +GL K
Sbjct: 62 LYNMHISPYEKGNIFNKDPLRPRKLLLHRHEINKLSGYVSRKGYTLIPTKVYLK-RGLVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++LA+A+GKK +DKRE +RD R+ + +E
Sbjct: 121 VELAVAKGKKLFDKREDIARRDAKRELEKQFKEK 154
>gi|111023371|ref|YP_706343.1| SsrA-binding protein [Rhodococcus jostii RHA1]
gi|123339713|sp|Q0S2Q1|SSRP_RHOSR RecName: Full=SsrA-binding protein
gi|110822901|gb|ABG98185.1| SsrA-binding protein [Rhodococcus jostii RHA1]
Length = 157
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +KV++ NRKAR+NY I+ +EAGI L GTEVKSLR K ++ D++AT ++ E
Sbjct: 1 MKEK---GRKVIATNRKARHNYTILDVYEAGIALVGTEVKSLREGKASLVDAFATVDDGE 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL + +IPEY Q NH PRR RKLLL K+EI L R TLVP+ +YF+ G
Sbjct: 58 VWLRSLHIPEYTQGTWTNHAPRRTRKLLLHKQEIEHLVGKTREGNQTLVPLSMYFSD-GK 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK++YDKR+ +R +R+ R L
Sbjct: 117 VKVELALAKGKQDYDKRQDLARRTAEREVTRELGRR 152
>gi|149375778|ref|ZP_01893546.1| SsrA-binding protein [Marinobacter algicola DG893]
gi|149359903|gb|EDM48359.1| SsrA-binding protein [Marinobacter algicola DG893]
Length = 159
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 97/160 (60%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K G P ++ N+KA++ YHI FEAG+ L G EVKS+R K ++D+Y ++
Sbjct: 1 MSKKKPGAPSA-TIALNKKAKHEYHIEERFEAGLALLGWEVKSIRAGKAQLTDAYVLLKD 59
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL +EI ++ V + G T +P+ +Y+
Sbjct: 60 GEAWLLGSHIIPLTAASTHVIADPTRTRKLLLHAKEIAKIVGKVNQAGHTCIPLAMYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K K ++AL +GKK +DKR TEK+RDW+RQK RILRE N
Sbjct: 119 KNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRILRETN 158
>gi|320010496|gb|ADW05346.1| SsrA-binding protein [Streptomyces flavogriseus ATCC 33331]
Length = 162
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +K+++ N+KAR++YH++ ++E G+VL GTEVKSLR+ + ++ D + ++ E
Sbjct: 1 MAKEKDTGRKMIAQNKKARHDYHVLDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N ++PEY+Q NH +R RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 61 AWLHNVHVPEYVQGTWTNHSAKRKRKLLLHRAEIDKLRSKSQETGHTIVPLALYFKDS-R 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K+++ALA+GKK YDKR+T +++ R+ +R +
Sbjct: 120 VKVEIALAKGKKEYDKRQTLREKQDTRETNRAI 152
>gi|27262178|gb|AAN87370.1| SsrA-binding protein [Heliobacillus mobilis]
Length = 155
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ +KV+ DNR+AR++YHI ++EAG+ LTGTE+KSLR K NI D++A EN E+ L N
Sbjct: 2 SEGQKVLCDNRRARHDYHIEEAYEAGMALTGTEIKSLRQGKGNIKDAFARVENGEVLLYN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + Q NR+NH PRR RKLLL+K EI +L AAV++ G+TLVP+++Y +GLAK++L
Sbjct: 62 MHISPFEQGNRYNHEPRRTRKLLLNKSEIRKLGAAVQQKGLTLVPLRVYLK-RGLAKLEL 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+A+GKK YDKRE KRD R+ R +R+
Sbjct: 121 AIARGKKLYDKREDIAKRDAQREIARAVRQK 151
>gi|119715508|ref|YP_922473.1| SsrA-binding protein [Nocardioides sp. JS614]
gi|166223232|sp|A1SG51|SSRP_NOCSJ RecName: Full=SsrA-binding protein
gi|119536169|gb|ABL80786.1| SsrA-binding protein [Nocardioides sp. JS614]
Length = 159
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ N+KAR++YHI ++EAG+VL GTEVKSLR + ++ D + +
Sbjct: 1 MAK----EQGRKLIAQNKKARHDYHIEDTYEAGLVLQGTEVKSLRQGRASLVDGFVDIDR 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +IPEY Q NH RR RKLLL++ EI ++ V G+T+VP+ +YF
Sbjct: 57 GEAWLHGVHIPEYSQGTWTNHAARRKRKLLLNRDEIDKIERRVNEKGLTVVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+GKK++DKR +R +R+ + +
Sbjct: 116 GRAKVEIALAKGKKSWDKRAALAERQANRETEQAVGRR 153
>gi|289642125|ref|ZP_06474277.1| SsrA-binding protein [Frankia symbiont of Datisca glomerata]
gi|289508088|gb|EFD29035.1| SsrA-binding protein [Frankia symbiont of Datisca glomerata]
Length = 159
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+V+ NR+ R++Y I+ + EAGIVL GTEVKSLR + ++ D++A +
Sbjct: 1 MAK----ETGRKLVAQNRRVRHDYTILDTIEAGIVLQGTEVKSLRAGRASLVDAFAQISD 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +IPEY + NH PRR RKLLL + EI +L R G+TLVP+ +YF
Sbjct: 57 GEAWLHGVHIPEYTEGTWTNHAPRRRRKLLLHRDEIAKLVGKTREGGLTLVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+G+K YDKR +RD R+ R+L
Sbjct: 116 GRAKVEIALARGRKTYDKRHALAERDASREVSRVLGRR 153
>gi|54026453|ref|YP_120695.1| SsrA-binding protein [Nocardia farcinica IFM 10152]
gi|61216440|sp|Q5YR60|SSRP_NOCFA RecName: Full=SsrA-binding protein
gi|54017961|dbj|BAD59331.1| putative small protein B [Nocardia farcinica IFM 10152]
Length = 160
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/156 (47%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +KV++ NR+AR+NY I+ ++EAGIVL GTEVKSLR K ++ D++AT +N E
Sbjct: 4 MKEK---GRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL +IPE+ NH PRR RKLLL KREI RL R TLVP+ +YF+ G
Sbjct: 61 VWLRGLHIPEFSHGTWTNHSPRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSD-GK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK++YDKR+ +R +R+ R L
Sbjct: 120 VKVELALARGKQDYDKRQDLARRTAEREVTRELGRR 155
>gi|229544469|gb|ACQ76411.1| SmpB [Escherichia coli K-12]
Length = 151
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + E +L +
Sbjct: 1 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 60
Query: 70 IPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ K+ +
Sbjct: 61 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIG 119
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+GKK +DKR K+R+W K RI++
Sbjct: 120 VAKGKKQHDKRSDIKEREWQVDKARIMKN 148
>gi|255659086|ref|ZP_05404495.1| SsrA-binding protein [Mitsuokella multacida DSM 20544]
gi|260848529|gb|EEX68536.1| SsrA-binding protein [Mitsuokella multacida DSM 20544]
Length = 157
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
R N K V +NRKAR++Y I ++EAGI L GTEVKSLR + N+ DSYA+ +N EI++
Sbjct: 3 RKNAGIKTVCENRKARHDYFIHETYEAGIALQGTEVKSLRAGRANLKDSYASIQNGEIFV 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y Q N FNH P R RKLL+ K EI +L+A R G TLVP+KIYF G AK+
Sbjct: 63 ENLHISPYDQGNIFNHDPLRRRKLLMHKAEIVKLFAKTREKGFTLVPLKIYFKQ-GRAKM 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++ALA GK NYDKR+ ++ R+ R L++
Sbjct: 122 EIALASGKHNYDKRQDLHEKAAKREIERALKDR 154
>gi|29831650|ref|NP_826284.1| SsrA-binding protein [Streptomyces avermitilis MA-4680]
gi|39932353|sp|Q82D77|SSRP_STRAW RecName: Full=SsrA-binding protein
gi|29608766|dbj|BAC72819.1| putative small protein B [Streptomyces avermitilis MA-4680]
Length = 177
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/154 (42%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
+ + +K+V+ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + +++D + + +
Sbjct: 15 ASGKVKDGKRKIVAQNKKARHDYAIIDTYEAGLVLTGTEVKSLRQGRASLTDGFVQIDGN 74
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL N++IPEY Q NH RR RKLLL + EI +L + G T+VP+ +YF G
Sbjct: 75 EAWLHNAHIPEYSQGTWTNHTVRRKRKLLLHREEIDKLASKSEETGHTIVPLALYFKD-G 133
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
AK ++ALA+GKK YDKR+T +++ R+ R +
Sbjct: 134 RAKAEIALARGKKEYDKRQTLREKQDRRESDRAI 167
>gi|315657056|ref|ZP_07909941.1| SsrA-binding protein [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315492448|gb|EFU82054.1| SsrA-binding protein [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 201
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KKV++ N+KA ++Y + S+EAG+ LTGTEVK+LR+ + ++S+++ + E W
Sbjct: 44 KAESDAKKVIARNKKAAHDYFLEDSYEAGLSLTGTEVKALRMGRASLSEAWVEVDRGEAW 103
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IPEY + NH P+R RKLLL KREI +L AV G T+VP+++YF G AK
Sbjct: 104 LQGANIPEYFYGSWTNHAPKRKRKLLLHKREIIKLEGAVAAKGYTIVPVELYFVG-GRAK 162
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++A+A+GK+ +DKR+T ++R+ DR+ R LRE N
Sbjct: 163 VEIAVAKGKQEWDKRQTIRQREDDREAQRALREAN 197
>gi|313895989|ref|ZP_07829543.1| SsrA-binding protein [Selenomonas sp. oral taxon 137 str. F0430]
gi|312975414|gb|EFR40875.1| SsrA-binding protein [Selenomonas sp. oral taxon 137 str. F0430]
Length = 157
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N K+ +NRKAR++Y I ++EAG+ L GTEVKSLR + N+ DSYA +N E++L
Sbjct: 3 KKNESVKIACENRKARHDYFIHETYEAGMELVGTEVKSLRAGRANLRDSYAYIKNGEVFL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF G AK+
Sbjct: 63 DHMHISPYEQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-HGRAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK NYDKR+T K + R+ + L+E
Sbjct: 122 ELALASGKHNYDKRQTLKAKTAKREVEQALKER 154
>gi|198282594|ref|YP_002218915.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218666519|ref|YP_002424784.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247115|gb|ACH82708.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993]
gi|218518732|gb|ACK79318.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 153
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NR+A++ Y I FEAG+VL G EVKSLR +++ + DSY +N E+WL ++I
Sbjct: 4 TIALNREAKHEYFIEERFEAGMVLQGWEVKSLRANRLTLKDSYIIVKNAELWLLGAHISP 63
Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ N P R RKLL+ + +I+R+ +V R G T+VP+ +Y+ G AK+++AL +
Sbjct: 64 LPTASTHINPDPTRTRKLLMHREQINRMIGSVERKGFTIVPLAMYWKQ-GRAKVEIALVK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GK+ +DKR T K R+W R K RI++
Sbjct: 123 GKQEHDKRATVKDREWQRDKARIMK 147
>gi|113868014|ref|YP_726503.1| SsrA-binding protein [Ralstonia eutropha H16]
gi|122946822|sp|Q0KA36|SSRP_RALEH RecName: Full=SsrA-binding protein
gi|113526790|emb|CAJ93135.1| tmRNA-binding protein small potein B [Ralstonia eutropha H16]
Length = 150
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I +EAGIVL G EVK++R +V I + Y + E++L ++I
Sbjct: 2 TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ N P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+
Sbjct: 62 LQSASTHVNPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKRETEK+RDW R+K RI++
Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145
>gi|320530929|ref|ZP_08031962.1| SsrA-binding protein [Selenomonas artemidis F0399]
gi|320136794|gb|EFW28743.1| SsrA-binding protein [Selenomonas artemidis F0399]
Length = 157
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N K+ +NRKAR++Y I ++EAG+ L GTEVKSLR + N+ DSYA +N E++L
Sbjct: 3 KKNESVKIACENRKARHDYFIHETYEAGMELVGTEVKSLRAGRANLRDSYAYIKNGEVFL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF +G AK+
Sbjct: 63 DHMHISPYEQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-RGRAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK NYDKR+T K + R+ + L+E
Sbjct: 122 ELALASGKHNYDKRQTLKAKTAKREVEQALKER 154
>gi|182438354|ref|YP_001826073.1| SsrA-binding protein [Streptomyces griseus subsp. griseus NBRC
13350]
gi|239988113|ref|ZP_04708777.1| SsrA-binding protein [Streptomyces roseosporus NRRL 11379]
gi|291445094|ref|ZP_06584484.1| SmpB protein [Streptomyces roseosporus NRRL 15998]
gi|326779005|ref|ZP_08238270.1| SsrA-binding protein [Streptomyces cf. griseus XylebKG-1]
gi|178466870|dbj|BAG21390.1| putative small protein B [Streptomyces griseus subsp. griseus NBRC
13350]
gi|291348041|gb|EFE74945.1| SmpB protein [Streptomyces roseosporus NRRL 15998]
gi|326659338|gb|EGE44184.1| SsrA-binding protein [Streptomyces cf. griseus XylebKG-1]
Length = 162
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +K+++ N+KAR++Y I+ ++E G+VL GTEVKSLR+ + ++ D + ++ E
Sbjct: 1 MAKEKDTGRKMIAQNKKARHDYTILDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDDHE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N ++PEY+Q NH +R RKLLL + EI +L + + G T+VP+ +YF G
Sbjct: 61 AWLHNIHVPEYVQGTWTNHAAKRKRKLLLHRAEIDKLESKSQETGHTIVPLALYFKD-GR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQ 150
K+++ALA+GKK YDKR+T +++ R+
Sbjct: 120 VKVEIALAKGKKEYDKRQTLREKQDTRE 147
>gi|32033509|ref|ZP_00133836.1| COG0691: tmRNA-binding protein [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|126208343|ref|YP_001053568.1| SsrA-binding protein [Actinobacillus pleuropneumoniae L20]
gi|190150195|ref|YP_001968720.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|303251273|ref|ZP_07337451.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|303252865|ref|ZP_07339024.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|307247855|ref|ZP_07529891.1| hypothetical protein appser2_8440 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307250108|ref|ZP_07532070.1| hypothetical protein appser4_8940 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|307252494|ref|ZP_07534390.1| hypothetical protein appser6_10110 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|307256920|ref|ZP_07538698.1| hypothetical protein appser10_9240 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|307261352|ref|ZP_07543027.1| hypothetical protein appser12_9180 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|307263533|ref|ZP_07545148.1| hypothetical protein appser13_9490 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|166222354|sp|A3N0M7|SSRP_ACTP2 RecName: Full=SsrA-binding protein
gi|238692393|sp|B3H1K6|SSRP_ACTP7 RecName: Full=SsrA-binding protein
gi|126097135|gb|ABN73963.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 5b
str. L20]
gi|189915326|gb|ACE61578.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 7
str. AP76]
gi|302648295|gb|EFL78492.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 2
str. 4226]
gi|302649815|gb|EFL79993.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 6
str. Femo]
gi|306855657|gb|EFM87824.1| hypothetical protein appser2_8440 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306857839|gb|EFM89933.1| hypothetical protein appser4_8940 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306860086|gb|EFM92103.1| hypothetical protein appser6_10110 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306864654|gb|EFM96559.1| hypothetical protein appser10_9240 [Actinobacillus pleuropneumoniae
serovar 10 str. D13039]
gi|306869083|gb|EFN00885.1| hypothetical protein appser12_9180 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306871176|gb|EFN02905.1| hypothetical protein appser13_9490 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 159
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E
Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+
Sbjct: 61 AFLFGATITPLNMASTHIVCDPTRTRKLLLNKRELDSLFGKVNRDGMTVVALSLYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKVGVAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157
>gi|283778267|ref|YP_003369022.1| SsrA-binding protein [Pirellula staleyi DSM 6068]
gi|283436720|gb|ADB15162.1| SsrA-binding protein [Pirellula staleyi DSM 6068]
Length = 179
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 103/151 (68%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+PP +V++NRKAR+NY I+ S E GI L G+EVKSLR K+++ ++YA ++ ++WL
Sbjct: 28 DPPVTLVAENRKARFNYEILDSLECGIQLVGSEVKSLRDGKLSLDEAYARIKDGDVWLVG 87
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+ I EY QA+ +NH P+R RKLL+ K+++ + G+TLVP+K+YF +G+AK+ +
Sbjct: 88 ADIAEYKQASIWNHAPKRPRKLLMHKQQMRKFAGTSHDKGLTLVPLKVYFTERGIAKVVI 147
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +GKK +DKRET KK D R R R+
Sbjct: 148 GLCRGKKLHDKRETLKKNDAKRDISRAFRKK 178
>gi|183602515|ref|ZP_02963880.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis HN019]
gi|219683560|ref|YP_002469943.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis AD011]
gi|241190589|ref|YP_002967983.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04]
gi|241195995|ref|YP_002969550.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|183218156|gb|EDT88802.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis HN019]
gi|219621210|gb|ACL29367.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis AD011]
gi|240248981|gb|ACS45921.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04]
gi|240250549|gb|ACS47488.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis DSM
10140]
gi|289178328|gb|ADC85574.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis BB-12]
gi|295793576|gb|ADG33111.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis V9]
Length = 163
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61
+ + +K+++ NR+AR++Y I ++EAG+ LTGTEVKSLR + ++++S+ +
Sbjct: 1 MAKKEQSNEKMIAQNRRARHDYEIEDTYEAGLALTGTEVKSLREGRASLAESFISIDKRG 60
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E+WL + IPEYL NH P+R RKLLL +I +L ++ G T+VP+++YFN G
Sbjct: 61 EVWLEGANIPEYLNGTWNNHAPKRKRKLLLHGAQIDKLRRQIQAKGYTIVPLQLYFNEDG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ +ALA+GKK YDKR+ ++ R+ R++R N
Sbjct: 121 RAKLKIALARGKKEYDKRQALREEQDKREALRMMRYKN 158
>gi|196249335|ref|ZP_03148033.1| SsrA-binding protein [Geobacillus sp. G11MC16]
gi|187611499|sp|A4ISN8|SSRP_GEOTN RecName: Full=SsrA-binding protein
gi|196211092|gb|EDY05853.1| SsrA-binding protein [Geobacillus sp. G11MC16]
Length = 155
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I
Sbjct: 7 KVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ R+ R RE
Sbjct: 126 GKKKYDKREDMKRKEAQREIERAFRER 152
>gi|210631262|ref|ZP_03296824.1| hypothetical protein COLSTE_00709 [Collinsella stercoris DSM 13279]
gi|210160087|gb|EEA91058.1| hypothetical protein COLSTE_00709 [Collinsella stercoris DSM 13279]
Length = 161
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 92/155 (59%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KK+++ NR A + Y I +FE G+ L GTEV+SLR I+DS+A N E W
Sbjct: 6 PKPRKEKKLIAKNRSAHHEYFIDETFECGLELAGTEVRSLRERACQITDSFALIRNGECW 65
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y + FN P R RKLLL +++I L +R G+ LVP+++YFN G K
Sbjct: 66 LYNVHIHPYSNGSIFNRDPDRRRKLLLHRKQIDYLDGKLRTRGVALVPLELYFNEDGRVK 125
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ L L +GKK YDKRE KRD R+ R L++ +
Sbjct: 126 LLLGLGRGKKLYDKREDMAKRDMQREIDRALKQRS 160
>gi|225018612|ref|ZP_03707804.1| hypothetical protein CLOSTMETH_02562 [Clostridium methylpentosum
DSM 5476]
gi|224948606|gb|EEG29815.1| hypothetical protein CLOSTMETH_02562 [Clostridium methylpentosum
DSM 5476]
Length = 156
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KK+++ NRKAR++Y + SFEAGI L GTEVKSLR VN+ DS+ E EI++ +
Sbjct: 6 GKKIIALNRKARHDYFVEESFEAGIELVGTEVKSLRKGAVNLKDSFCYIEQGEIFVHGMH 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q N FN P R RKLL+ K+EI RL+ V++ G +L+P+ +YF + K++L L
Sbjct: 66 ISPYEQGNIFNKDPIRIRKLLMHKKEIARLFGQVKQQGYSLIPLSLYFKSS-RVKLELGL 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKR KRD R+ R ++E +
Sbjct: 125 CKGKKLYDKRADAAKRDAKREMSRAIKERS 154
>gi|22299470|ref|NP_682717.1| SsrA-binding protein [Thermosynechococcus elongatus BP-1]
gi|30173266|sp|Q8DHM0|SSRP_THEEB RecName: Full=SsrA-binding protein
gi|22295653|dbj|BAC09479.1| ssrA-binding protein [Thermosynechococcus elongatus BP-1]
Length = 152
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 98/151 (64%), Gaps = 2/151 (1%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KV+S+NR+AR+ Y I+ ++E G+VL GTEVKS+R KVN+ D +A N E WL N
Sbjct: 3 DSIKVLSENRQARFQYEILETYECGLVLLGTEVKSIRAGKVNLRDGFARIRNGEAWLMNV 62
Query: 69 YIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + N +NH P R+RKLLL K+EI +L V + G+TLVP+K+Y G K+ L
Sbjct: 63 HISPHESTNPSYNHDPLRDRKLLLHKQEIRKLVGKVEQKGLTLVPLKLYLK-NGRVKVSL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK +DKR+ K+R R+ R +++
Sbjct: 122 GLARGKKLHDKRQDLKQRQDKREMERAMKQR 152
>gi|237747460|ref|ZP_04577940.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS]
gi|229378811|gb|EEO28902.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS]
Length = 149
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I FEAG+ L G EVKS+R +V + ++Y ++ EI+L ++I
Sbjct: 2 TIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKSGEIFLFGAHISP 61
Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R+RKLL+ EI +L V R G TLVP+ ++F+ KG K ++ LA+
Sbjct: 62 LPTASTHIRPDPVRDRKLLMHASEIGKLIGKVERAGYTLVPLNLHFS-KGRIKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRETEK+RDW R++ +I++++
Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQN 147
>gi|17546143|ref|NP_519545.1| SsrA-binding protein [Ralstonia solanacearum GMI1000]
gi|22096162|sp|Q8XZH1|SSRP_RALSO RecName: Full=SsrA-binding protein
gi|17428439|emb|CAD15126.1| probable ssra-binding protein [Ralstonia solanacearum GMI1000]
gi|299067480|emb|CBJ38679.1| RNA-binding protein, component of the SsrA quality-control system
[Ralstonia solanacearum CMR15]
Length = 148
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y + +EAGI L G EVK++R +V I + Y + E++L ++I
Sbjct: 2 TIADNKKAFFDYFVEERYEAGIALEGWEVKAIRAGRVQIKEGYVVIRDAELFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLL EI +L V + G TLVP+ +++ A+G K ++ LA+
Sbjct: 62 LQSASTHVKPDPTRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHY-ARGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRETEK RDW R+K R++RE
Sbjct: 121 GKKLYDKRETEKDRDWQREKARLMREK 147
>gi|320103367|ref|YP_004178958.1| SsrA-binding protein [Isosphaera pallida ATCC 43644]
gi|319750649|gb|ADV62409.1| SsrA-binding protein [Isosphaera pallida ATCC 43644]
Length = 178
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K+ KVV+ NR+AR+ Y ++ EAG+VLTGTEVKSLR K N+ DSYA + +E+
Sbjct: 25 KADEAAGIKVVARNRRARFEYDLLEKIEAGLVLTGTEVKSLRNGKANLEDSYAMLDREEL 84
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL + IPEYLQANR NH P+R+RKLLL +REI+RL + G+T+VP+ IYF G+A
Sbjct: 85 WLHGADIPEYLQANRMNHKPKRSRKLLLHRREINRLASKTAERGLTIVPLSIYFK-NGIA 143
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++A+A+G+K YDKR+ K++D R R LR
Sbjct: 144 KVEIAVARGRKLYDKRQALKEQDAKRDIDRALRR 177
>gi|317473584|ref|ZP_07932873.1| SsrA-binding protein [Anaerostipes sp. 3_2_56FAA]
gi|316898874|gb|EFV20899.1| SsrA-binding protein [Anaerostipes sp. 3_2_56FAA]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ K++++N+KAR++Y + + EAGIVL GTEVKS+R +I +++ + +N E
Sbjct: 1 MNMAKTGGTKLIANNKKARHDYFVEETVEAGIVLFGTEVKSMRQGHCSIKEAFISIDNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+++ +I Y + N FN P R RKLL+ EI R+ + V R G TL+P+++YF L
Sbjct: 61 VFVKQMHISPYEKGNIFNKDPLRERKLLMHSSEITRMMSEVNRKGYTLIPLRVYFKGS-L 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ L +GKK YDKR+ K+D R+ R + N
Sbjct: 120 VKVEIGLCRGKKLYDKRQDIAKKDQQREAMRDFKVRN 156
>gi|257054831|ref|YP_003132663.1| SsrA-binding protein [Saccharomonospora viridis DSM 43017]
gi|256584703|gb|ACU95836.1| SsrA-binding protein [Saccharomonospora viridis DSM 43017]
Length = 160
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +KV+ NR+AR++Y IV ++EAG+ L GTEVKSLR K +++DS+AT ++
Sbjct: 1 MAK----ENGRKVIVSNRRARHDYTIVDTYEAGVALVGTEVKSLRAGKASLADSFATVDD 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L +IPEY NH PRR RKLLL +REI +L + G +L+P+ +YF
Sbjct: 57 GEVFLRGLHIPEYSHGTWTNHEPRRTRKLLLHRREIEKLIGKTKESGYSLIPLSLYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G K++LAL +G+K YDKR+ KRD R+ R +
Sbjct: 116 GKVKVELALGKGRKAYDKRQAIAKRDAQREMARAM 150
>gi|319787261|ref|YP_004146736.1| SsrA-binding protein [Pseudoxanthomonas suwonensis 11-1]
gi|317465773|gb|ADV27505.1| SsrA-binding protein [Pseudoxanthomonas suwonensis 11-1]
Length = 171
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 103/159 (64%), Gaps = 2/159 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
KS+ P + ++ N++A++ YH+V FEAG+ L G EVK++R + N++D YA ++
Sbjct: 11 KAKSKAEPATRTIALNKRAKFEYHLVERFEAGLALQGWEVKAIRAGRANLTDGYAYVQDG 70
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI+L + + +Q + RR RKLLL + EI +L V+RDG T+VP +Y+
Sbjct: 71 EIYLIGAQVTPLIQASTHVVANDRRTRKLLLHRHEIDKLIGGVQRDGYTIVPTAMYWKGN 130
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GK+ +DKR+T K+RDW R+K R++R HN
Sbjct: 131 -KVKLEIALAKGKQEHDKRDTAKERDWQREKQRVMRRHN 168
>gi|257453942|ref|ZP_05619218.1| SsrA-binding protein [Enhydrobacter aerosaccus SK60]
gi|257448607|gb|EEV23574.1| SsrA-binding protein [Enhydrobacter aerosaccus SK60]
Length = 156
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +++ N+KAR+ Y I SFEAG+ L G EVKS+R K+ I++SY F +
Sbjct: 1 MTKKPKMPS---LIASNKKARHEYFIEESFEAGLELLGWEVKSIRAGKMRITESYVIFRD 57
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L ++I P + P R RKLLL +REI +L+ V + G T V +K+Y++
Sbjct: 58 GEAFLFGAHIQPLLSASTHIVADPLRTRKLLLHRREIDKLFGMVNQKGHTCVALKVYWS- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K ++ALA+GKK +DKR T K+RD+ R+K R L+
Sbjct: 117 HGRVKCEIALAKGKKLHDKRATLKERDYQREKQRGLKN 154
>gi|294649583|ref|ZP_06727002.1| SsrA-binding protein [Acinetobacter haemolyticus ATCC 19194]
gi|292824522|gb|EFF83306.1| SsrA-binding protein [Acinetobacter haemolyticus ATCC 19194]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+N E +L
Sbjct: 8 KKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYVIFKNGEAFLF 67
Query: 67 NSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
S I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ L K+
Sbjct: 68 GSQIQPLLSASTHVVPEATRTRKLLLSRRELEKLLGAVNQKGYSCVPLACYWKGP-LVKL 126
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
++AL +GK+ +DKR TEK RDW R K R+L
Sbjct: 127 EIALVKGKQLHDKRATEKDRDWQRDKARML 156
>gi|262280055|ref|ZP_06057840.1| ssrA-binding protein [Acinetobacter calcoaceticus RUH2202]
gi|262260406|gb|EEY79139.1| ssrA-binding protein [Acinetobacter calcoaceticus RUH2202]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++ +++SY F+
Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMTLTESYVIFK 60
Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L S I P + R RKLLLS+R++ L AV + G + VP+ Y+
Sbjct: 61 NSEAFLLGSQIQPLLSASTHVVPEATRTRKLLLSRRQLEHLMGAVNQKGYSCVPLACYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K+++AL +GK+ +DKR TEK RDW R K RI
Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156
>gi|56551617|ref|YP_162456.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ZM4]
gi|241761258|ref|ZP_04759346.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|260752791|ref|YP_003225684.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|61216412|sp|Q5NPL5|SSRP_ZYMMO RecName: Full=SsrA-binding protein
gi|56543191|gb|AAV89345.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ZM4]
gi|241374165|gb|EER63662.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988]
gi|258552154|gb|ACV75100.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163]
Length = 160
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 78/150 (52%), Positives = 111/150 (74%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K++++NR+ARY Y +EAG+ LTGTEVKSLR + +I++SYA +N E+ L N+
Sbjct: 10 KKSKILAENRRARYEYAFEDFYEAGLALTGTEVKSLRFGQGSIAESYAEVKNGEVTLINA 69
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
IPE+ NRFNH P+R RKLLL +REI ++ AV R+GMT++P+ +YFN KG AK++LA
Sbjct: 70 NIPEFSHGNRFNHEPKRPRKLLLHEREIRKMQTAVSREGMTVIPVSLYFNNKGKAKLELA 129
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKK +DKR T K+RDW R + R+LR+
Sbjct: 130 IARGKKTHDKRATIKERDWKRDQARLLRDK 159
>gi|83749957|ref|ZP_00946911.1| SsrA-binding protein [Ralstonia solanacearum UW551]
gi|207723377|ref|YP_002253776.1| ssra-binding protein [Ralstonia solanacearum MolK2]
gi|207743221|ref|YP_002259613.1| ssra-binding protein [Ralstonia solanacearum IPO1609]
gi|300704211|ref|YP_003745814.1| RNA-binding protein, component of the ssra quality-control system
[Ralstonia solanacearum CFBP2957]
gi|83723376|gb|EAP70600.1| SsrA-binding protein [Ralstonia solanacearum UW551]
gi|206588576|emb|CAQ35539.1| ssra-binding protein [Ralstonia solanacearum MolK2]
gi|206594618|emb|CAQ61545.1| ssra-binding protein [Ralstonia solanacearum IPO1609]
gi|299071875|emb|CBJ43204.1| RNA-binding protein, component of the SsrA quality-control system
[Ralstonia solanacearum CFBP2957]
Length = 148
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++N+KA ++Y I +EAGI L G EVK++R ++V I + Y + E++L ++I
Sbjct: 2 TIAENKKAFFDYFIEERYEAGIALEGWEVKAIRANRVQIKEGYVVIRDAELFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLL EI +L V + G TLVP+ +++ A+G K ++ LA+
Sbjct: 62 LQSASTHVKPDPTRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHY-ARGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRETEK RDW R+K R++RE
Sbjct: 121 GKKLYDKRETEKDRDWQREKARLMREK 147
>gi|220910218|ref|YP_002485529.1| SsrA-binding protein [Cyanothece sp. PCC 7425]
gi|219866829|gb|ACL47168.1| SsrA-binding protein [Cyanothece sp. PCC 7425]
Length = 157
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ + K+VSDNR+AR+ Y I+ ++EAG+ LTGTEVKS+R KVN+ D +A N E+
Sbjct: 4 SQKSESYKIVSDNRQARFLYEILETYEAGVSLTGTEVKSIRAGKVNLRDGFALIRNGEVV 63
Query: 65 LTNSYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I + + FNH PRR RKLLL + EI +L V + G+TLVP+K+Y +G
Sbjct: 64 LMNVHISPHQTTGQAFNHDPRRTRKLLLHREEIRKLIGKVEQKGLTLVPLKMYLK-RGWV 122
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+D+ALA+GKK YDKRE K+R R R ++
Sbjct: 123 KVDIALARGKKLYDKREDLKQRQDKRDMERAMKNR 157
>gi|118579742|ref|YP_900992.1| SsrA-binding protein [Pelobacter propionicus DSM 2379]
gi|166223236|sp|A1ANL4|SSRP_PELPD RecName: Full=SsrA-binding protein
gi|118502452|gb|ABK98934.1| SsrA-binding protein [Pelobacter propionicus DSM 2379]
Length = 152
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I EAG+VL GTEVKSLR K N++DS+ + E +L N +
Sbjct: 2 GEKLICNNKKAYHDYFIEEKMEAGLVLLGTEVKSLRAGKANLNDSFMLVRDGEAFLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH RNRKLLL +++I RLY +R G ++VP+++YF GL K+++ L
Sbjct: 62 ISPYEFGNRQNHQADRNRKLLLHRKQIDRLYGRIREQGYSIVPLRMYFKD-GLVKVEIGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R+ + L+ N
Sbjct: 121 AKGKKLYDKREDMKKKDSQRELSQALKSKN 150
>gi|299771328|ref|YP_003733354.1| SsrA-binding protein [Acinetobacter sp. DR1]
gi|298701416|gb|ADI91981.1| SsrA-binding protein [Acinetobacter sp. DR1]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%)
Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++ +++SY F+
Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMTLTESYVIFK 60
Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L S I P + R RKLLLS+R++ L AV + G + VP+ Y+
Sbjct: 61 NGEAFLLGSQIQPLLSASTHVVPEATRTRKLLLSRRQLEHLMGAVNQKGYSCVPLACYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K+++AL +GK+ +DKR TEK RDW R K RI
Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156
>gi|302544940|ref|ZP_07297282.1| SsrA-binding protein [Streptomyces hygroscopicus ATCC 53653]
gi|302462558|gb|EFL25651.1| SsrA-binding protein [Streptomyces himastatinicus ATCC 53653]
Length = 161
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 103/155 (66%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ N+KAR++YHI+ ++E G+VLTGTEVKSLR + +++D +A +N
Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHIIDTYECGLVLTGTEVKSLRQGRASLADGFAQLDN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N +IPEY Q NH RR RKLLL + EI +L + G T+VP+ +YF
Sbjct: 57 GEAWLHNVHIPEYSQGTWTNHSARRRRKLLLHRAEIDKLVHKTQETGHTIVPLSLYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK+YDKR+ +++ R+ R +
Sbjct: 116 GRAKVEVALAKGKKDYDKRQALREKQDRRETDRAI 150
>gi|226365875|ref|YP_002783658.1| SsrA-binding protein [Rhodococcus opacus B4]
gi|226244365|dbj|BAH54713.1| SsrA-binding protein [Rhodococcus opacus B4]
Length = 157
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +KV++ NRKAR+NY I+ +EAGI L GTEVKSLR K ++ D++AT ++ E
Sbjct: 1 MKEK---GRKVIATNRKARHNYTILDVYEAGIALVGTEVKSLREGKASLVDAFATVDDGE 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL + +IPEY Q NH PRR RKLLL KREI L R TLVP+ +YF+ G
Sbjct: 58 VWLRSLHIPEYTQGTWTNHSPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFSD-GK 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK++YDKR+ +R +R+ R L
Sbjct: 117 VKVELALAKGKQDYDKRQDLARRTAEREVTRELGRR 152
>gi|84683963|ref|ZP_01011865.1| SsrA-binding protein [Maritimibacter alkaliphilus HTCC2654]
gi|84667716|gb|EAQ14184.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2654]
Length = 161
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ N KV+++NR+AR++Y I E GIVL G+EVKSLRV+ NI++SYA E+
Sbjct: 4 MA-KTDENKNYKVIAENRRARFDYAIEDDLEVGIVLEGSEVKSLRVNSANIAESYAAVED 62
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N YI Y QA F H RR RKLL SK+E+ RL+ +R GMT+VP+ +YFN +
Sbjct: 63 GELWLVNGYIAPYEQAKTFGHEERRRRKLLCSKKELARLWNDTQRKGMTIVPLVLYFNHR 122
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G+AK+ + +A+GKK +DKR K+DW+RQK R+L++
Sbjct: 123 GIAKMKVGIAKGKKVHDKRADTAKKDWNRQKQRLLKQ 159
>gi|298346508|ref|YP_003719195.1| tmRNA-binding protein [Mobiluncus curtisii ATCC 43063]
gi|304389753|ref|ZP_07371712.1| SsrA-binding protein [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|298236569|gb|ADI67701.1| tmRNA-binding protein [Mobiluncus curtisii ATCC 43063]
gi|304326929|gb|EFL94168.1| SsrA-binding protein [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 201
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KKV++ N+KA ++Y + S+EAG+ LTGTEVK+LR+ + ++S+++ + E W
Sbjct: 44 KAESDAKKVIARNKKAAHDYFLEDSYEAGLSLTGTEVKALRMGRASLSEAWVEVDRGEAW 103
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IPEY + NH P+R RKLLL KREI +L AV G T+VP+++YF G AK
Sbjct: 104 LQGANIPEYFYGSWTNHAPKRKRKLLLHKREIIKLEGAVAAKGYTIVPVELYFVG-GRAK 162
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++A+A+GK+ +DKR+T ++R+ DR+ R LRE N
Sbjct: 163 VEIAVAKGKQEWDKRQTIRQREDDREAQRALREAN 197
>gi|222099406|ref|YP_002533974.1| SsrA-binding protein [Thermotoga neapolitana DSM 4359]
gi|221571796|gb|ACM22608.1| SsrA-binding protein [Thermotoga neapolitana DSM 4359]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 105/145 (72%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F++ E++L N +IP
Sbjct: 11 KIVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKDGELYLLNLHIP 70
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+
Sbjct: 71 PYSHGGIHNHDPERPRKLLLHKRELKRLMGKVQEEGITIVPLKIYFNDRGIAKVEIAVAR 130
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
G+K YDKRE K+R+ +R+ ++
Sbjct: 131 GRKKYDKREAIKRREMERKIREYMK 155
>gi|169796971|ref|YP_001714764.1| SsrA-binding protein [Acinetobacter baumannii AYE]
gi|184157117|ref|YP_001845456.1| SsrA-binding protein [Acinetobacter baumannii ACICU]
gi|213156624|ref|YP_002318285.1| SsrA-binding protein [Acinetobacter baumannii AB0057]
gi|215484432|ref|YP_002326665.1| SsrA-binding protein [Acinetobacter baumannii AB307-0294]
gi|239501202|ref|ZP_04660512.1| SsrA-binding protein [Acinetobacter baumannii AB900]
gi|260553986|ref|ZP_05826251.1| tmRNA-binding protein [Acinetobacter sp. RUH2624]
gi|260555738|ref|ZP_05827958.1| SsrA-binding protein [Acinetobacter baumannii ATCC 19606]
gi|294839939|ref|ZP_06784622.1| SsrA-binding protein [Acinetobacter sp. 6013113]
gi|294842374|ref|ZP_06787057.1| SsrA-binding protein [Acinetobacter sp. 6014059]
gi|294858053|ref|ZP_06795822.1| SsrA-binding protein [Acinetobacter sp. 6013150]
gi|301346832|ref|ZP_07227573.1| SsrA-binding protein [Acinetobacter baumannii AB056]
gi|301510802|ref|ZP_07236039.1| SsrA-binding protein [Acinetobacter baumannii AB058]
gi|301594456|ref|ZP_07239464.1| SsrA-binding protein [Acinetobacter baumannii AB059]
gi|226734240|sp|B7GYP8|SSRP_ACIB3 RecName: Full=SsrA-binding protein
gi|226734241|sp|B7I7Q2|SSRP_ACIB5 RecName: Full=SsrA-binding protein
gi|238685495|sp|A3M2Y4|SSRP_ACIBT RecName: Full=SsrA-binding protein
gi|238688123|sp|B0V8G6|SSRP_ACIBY RecName: Full=SsrA-binding protein
gi|238690976|sp|B2HUN4|SSRP_ACIBC RecName: Full=SsrA-binding protein
gi|169149898|emb|CAM87791.1| ssrA-binding protein (Small protein B) [Acinetobacter baumannii
AYE]
gi|183208711|gb|ACC56109.1| tmRNA-binding protein [Acinetobacter baumannii ACICU]
gi|193076606|gb|ABO11278.2| ssrA-binding protein (Small protein B) [Acinetobacter baumannii
ATCC 17978]
gi|213055784|gb|ACJ40686.1| SsrA-binding protein [Acinetobacter baumannii AB0057]
gi|213988008|gb|ACJ58307.1| SsrA-binding protein [Acinetobacter baumannii AB307-0294]
gi|260404872|gb|EEW98377.1| tmRNA-binding protein [Acinetobacter sp. RUH2624]
gi|260410649|gb|EEX03947.1| SsrA-binding protein [Acinetobacter baumannii ATCC 19606]
gi|322507015|gb|ADX02469.1| smpB [Acinetobacter baumannii 1656-2]
gi|323516883|gb|ADX91264.1| SsrA-binding protein [Acinetobacter baumannii TCDC-AB0715]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 3/157 (1%)
Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+
Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLLGWEVKSLRAGRMSLTESYVIFK 60
Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L + I P + R RKLLLS+RE+ +L AV + G + VP+ Y+
Sbjct: 61 NGEAFLFGAQIQPLLSASTHIVPEATRTRKLLLSRRELEKLMGAVNQKGYSCVPLACYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K+++AL +GK+ +DKR TEK+RDW R K RI
Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKERDWQRDKARIF 156
>gi|325920208|ref|ZP_08182163.1| SsrA-binding protein [Xanthomonas gardneri ATCC 19865]
gi|325549294|gb|EGD20193.1| SsrA-binding protein [Xanthomonas gardneri ATCC 19865]
Length = 167
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 103/165 (62%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y
Sbjct: 1 MSKKPAKDKANGATATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIIDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q ++ RR+RKLLL +REI ++ ++V RDG TLVP
Sbjct: 61 AYVRSGEIFLIGAQITPLIQASSHTVPVERRDRKLLLHRREIDKVLSSVERDGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN
Sbjct: 121 LYWS-NNKVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164
>gi|254386624|ref|ZP_05001921.1| SsrA-binding protein [Streptomyces sp. Mg1]
gi|194345466|gb|EDX26432.1| SsrA-binding protein [Streptomyces sp. Mg1]
Length = 161
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++E G+VLTGTEVKSLR + ++ D + + E+
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYTIIDTYECGLVLTGTEVKSLRQGRASLVDGFVSVES 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + G T+VP+ +YF
Sbjct: 57 GEAWLYNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLDSKTGETGNTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+ +++ R+ +R++
Sbjct: 116 GRAKVEIALAKGKKEYDKRQALREKQDTRETNRVI 150
>gi|118617899|ref|YP_906231.1| SsrA-binding protein [Mycobacterium ulcerans Agy99]
gi|166223230|sp|A0PQZ1|SSRP_MYCUA RecName: Full=SsrA-binding protein
gi|118570009|gb|ABL04760.1| ssRNA-binding protein SmpB [Mycobacterium ulcerans Agy99]
Length = 168
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 1 MSLKSRGNP------PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDS 54
M+ +S+ KK+++ NRKAR+NY I+ FEAG+ L GTEVKSLR ++ D+
Sbjct: 1 MAAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLRERHASLVDA 60
Query: 55 YATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
+AT ++ E+WL N +IPEYL NH PRRNRKLLL +R+I L+ +R LVP+
Sbjct: 61 FATVDDGEVWLRNLHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLS 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+YF G K++LALA+GK +DKR+ +RD R+ R L
Sbjct: 121 MYFLD-GKVKVELALARGKHAHDKRQDLARRDAQREVIRELGRR 163
>gi|56752307|ref|YP_173008.1| SsrA-binding protein [Synechococcus elongatus PCC 6301]
gi|81300604|ref|YP_400812.1| SsrA-binding protein [Synechococcus elongatus PCC 7942]
gi|61216405|sp|Q5MZN2|SSRP_SYNP6 RecName: Full=SsrA-binding protein
gi|123556624|sp|Q31M94|SSRP_SYNE7 RecName: Full=SsrA-binding protein
gi|56687266|dbj|BAD80488.1| tmRNA binding protein SmpB [Synechococcus elongatus PCC 6301]
gi|81169485|gb|ABB57825.1| SsrA-binding protein [Synechococcus elongatus PCC 7942]
Length = 154
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KV+S+NR+AR+ Y I+ +FE GI L GTEVKS+R KVN+ D +A N E+WL N +
Sbjct: 6 GIKVLSENRQARFQYEILETFETGIELLGTEVKSIRAGKVNLRDGFALVRNGEVWLHNIH 65
Query: 70 IPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I + QA+ +NH P R RKLL+ + EI +L V + G+TLVP+K+Y G K+ L
Sbjct: 66 ISPHQQASAYYNHDPLRTRKLLMHREEIRKLIGKVEQKGLTLVPLKMYLKQ-GWVKVTLG 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L +GKK +DKRETE++R R R ++
Sbjct: 125 LGRGKKLHDKRETERRRQDQRDIQRAIKR 153
>gi|126734698|ref|ZP_01750444.1| SsrA-binding protein [Roseobacter sp. CCS2]
gi|126715253|gb|EBA12118.1| SsrA-binding protein [Roseobacter sp. CCS2]
Length = 157
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K N KV+++NR+ARY+Y I E GI+L G+EVKSLR + NI+DSYA+ ++
Sbjct: 1 MAKKP-ENKNYKVIAENRRARYDYAIEDDLEVGIILMGSEVKSLRTGQSNIADSYASVDD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WLTN+YI Y F H RR RKLL+S+RE+ RL+ A +R+GMTLVP+ +YFN +
Sbjct: 60 GELWLTNAYIAPYD-RAMFTHEERRKRKLLVSRRELARLWNATKREGMTLVPLVMYFNDR 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
GL K+ +A A+GKKN+DKR TE KRDW RQK R+LR
Sbjct: 119 GLVKLKIATAKGKKNHDKRATEAKRDWGRQKQRLLRH 155
>gi|71064901|ref|YP_263628.1| SsrA-binding protein [Psychrobacter arcticus 273-4]
gi|123649644|sp|Q4FUW4|SSRP_PSYA2 RecName: Full=SsrA-binding protein
gi|71037886|gb|AAZ18194.1| SsrA-binding protein [Psychrobacter arcticus 273-4]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P+ + N+KAR+ Y I +FEAG+ L G EVK++R K+ I+++Y F N+E
Sbjct: 1 MSKKSKKPENQICANKKARHEYFIEETFEAGLSLQGWEVKAIRAGKMTITEAYIIFRNNE 60
Query: 63 IWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L ++I P + + R RKLLL++REI +L+ AV + G VP+ Y+
Sbjct: 61 AFLFGAHIQPLLSSSTHVSPDSIRTRKLLLNRREIEKLFGAVNQKGYACVPLSCYWK-NS 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K + LA GKK +DKR+T K RDW+R K R ++
Sbjct: 120 LVKCQIGLALGKKQHDKRKTLKDRDWERDKQRGFKK 155
>gi|49080964|gb|AAT50078.1| PA4768 [synthetic construct]
Length = 160
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KA ++Y I + FEAG+ L G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKHPSG--TIAQNKKALHDYFIEQRFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL KRE+ +L+ AV++ G V + +Y+
Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLHKRELGKLFGAVQQKGYACVALSMYWKK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K ++ALA+GKK++DKR TEK+RD DR+ R +R
Sbjct: 119 H-LVKCEIALAKGKKDFDKRHTEKERDSDREIQRAMRH 155
>gi|238788244|ref|ZP_04632039.1| hypothetical protein yfred0001_36940 [Yersinia frederiksenii ATCC
33641]
gi|238723831|gb|EEQ15476.1| hypothetical protein yfred0001_36940 [Yersinia frederiksenii ATCC
33641]
Length = 164
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 123
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + +A+GKK+ DKR+ + R+W K RI++ N
Sbjct: 124 NAWTKIKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 163
>gi|138896634|ref|YP_001127087.1| SsrA-binding protein [Geobacillus thermodenitrificans NG80-2]
gi|134268147|gb|ABO68342.1| tmRNA-binding protein [Geobacillus thermodenitrificans NG80-2]
Length = 161
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I
Sbjct: 13 KVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 72
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+
Sbjct: 73 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 131
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ R+ R RE
Sbjct: 132 GKKKYDKREDMKRKEAQREIERAFRER 158
>gi|167039995|ref|YP_001662980.1| SsrA-binding protein [Thermoanaerobacter sp. X514]
gi|256751959|ref|ZP_05492829.1| SsrA-binding protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914085|ref|ZP_07131401.1| SsrA-binding protein [Thermoanaerobacter sp. X561]
gi|307724682|ref|YP_003904433.1| SsrA-binding protein [Thermoanaerobacter sp. X513]
gi|326389834|ref|ZP_08211398.1| SsrA-binding protein [Thermoanaerobacter ethanolicus JW 200]
gi|254778388|sp|B0K718|SSRP_THEPX RecName: Full=SsrA-binding protein
gi|166854235|gb|ABY92644.1| SsrA-binding protein [Thermoanaerobacter sp. X514]
gi|256749164|gb|EEU62198.1| SsrA-binding protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889020|gb|EFK84166.1| SsrA-binding protein [Thermoanaerobacter sp. X561]
gi|307581743|gb|ADN55142.1| SsrA-binding protein [Thermoanaerobacter sp. X513]
gi|325994102|gb|EGD52530.1| SsrA-binding protein [Thermoanaerobacter ethanolicus JW 200]
Length = 156
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/151 (47%), Positives = 104/151 (68%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+++ N+KA ++Y I ++EAGIVL+GTEVKS+R+ KVN+ DS+A EN+E++L N
Sbjct: 3 KEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GL K++L
Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLVKVEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+A+GKK YDKRE +RD R+ + +E
Sbjct: 122 AVARGKKLYDKREDIARRDAKRELEKHFKEK 152
>gi|260579722|ref|ZP_05847581.1| SsrA-binding protein [Corynebacterium jeikeium ATCC 43734]
gi|258602152|gb|EEW15470.1| SsrA-binding protein [Corynebacterium jeikeium ATCC 43734]
Length = 184
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + VV+ NRKAR++YHI+ ++E G+VL GTEVKSLR K ++ D+YAT + E+WL
Sbjct: 27 QKGTGQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWL 86
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+IPEY + NH PRR RKLLL +REI L VR TLVP+++YF A G K+
Sbjct: 87 RGLHIPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVA-GKLKV 145
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA+GK+ YDKR+ K+R +R+ R +
Sbjct: 146 ELALARGKQEYDKRQDIKRRTEEREITREMGRR 178
>gi|293609053|ref|ZP_06691356.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292829626|gb|EFF87988.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325121174|gb|ADY80697.1| SsrA-binding protein [Acinetobacter calcoaceticus PHEA-2]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+
Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLLGWEVKSLRAGRMSLTESYVIFK 60
Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L + I P + R RKLLLS+RE+ +L +V + G + VP+ Y+
Sbjct: 61 NGEAFLFGAQIQPLLSASTHVVPEATRTRKLLLSRRELEKLTGSVNQKGYSCVPLACYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K+++AL +GK+ +DKR TEK RDW R K RI
Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156
>gi|325677936|ref|ZP_08157578.1| SsrA-binding protein [Ruminococcus albus 8]
gi|324110490|gb|EGC04664.1| SsrA-binding protein [Ruminococcus albus 8]
Length = 157
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M++ + K ++DNRKAR++Y I+ + E GI L GTEVKS+R VN+ DS+ + ++
Sbjct: 1 MAIDKK---GTKQIADNRKARHDYFILETIECGIELVGTEVKSIRQGGVNLKDSWCSVDD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ +I Y N FN PRR RKLLL KREI RL+ V+++G+ L+P+ +YF
Sbjct: 58 GEMWIKGMHISPYDHGNIFNKDPRRVRKLLLHKREIMRLFGQVQQEGLALIPLSLYFKGS 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L L +GKK +DKR+ K+ +R+ R L++
Sbjct: 118 -RVKVALGLCKGKKLHDKRDDMAKKAANREIERTLKDR 154
>gi|269795799|ref|YP_003315254.1| SsrA-binding protein [Sanguibacter keddieii DSM 10542]
gi|269097984|gb|ACZ22420.1| SsrA-binding protein [Sanguibacter keddieii DSM 10542]
Length = 176
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ P + +++ N+KAR+++ I FEAG+VL+GTEVK+LR + ++ D Y E +E W
Sbjct: 21 ASSGPVRALIASNKKARHDFAIEDVFEAGMVLSGTEVKALRAGRASLVDGYVNIEGNEAW 80
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L ++I EY NH PRR RKLLL + EI RL R G T+VP+++YF G AK
Sbjct: 81 LEGAHISEYAHGTWTNHAPRRKRKLLLHRSEIERLAQGTREKGFTIVPLQMYFLD-GRAK 139
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ALA+GKK YDKR+T +++ +R+ HR +R+
Sbjct: 140 VEIALARGKKEYDKRQTLREQQDNREAHRAIRQR 173
>gi|300781766|ref|ZP_07091620.1| SsrA-binding protein [Corynebacterium genitalium ATCC 33030]
gi|300533473|gb|EFK54534.1| SsrA-binding protein [Corynebacterium genitalium ATCC 33030]
Length = 162
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + V++ NRKAR++Y I+ ++E GIVL GTE+KSLR K ++ +++AT +N
Sbjct: 1 MAKKKKTD-GSNVIASNRKARHDYTILDTYETGIVLQGTEIKSLRDGKASLVEAFATIDN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N +IPEY + NH PRR RKLLL +REI L +R TLVP+K+Y
Sbjct: 60 GEVWLRNLHIPEYSMGSWTNHSPRRTRKLLLHRREIDTLEGKLRDGNRTLVPLKLYLKE- 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++L LAQGK++YDKR K+R DR+ R L
Sbjct: 119 GRVKVELGLAQGKQDYDKRRAIKQRTEDREITRDLGRK 156
>gi|262373257|ref|ZP_06066536.1| SsrA-binding protein [Acinetobacter junii SH205]
gi|262313282|gb|EEY94367.1| SsrA-binding protein [Acinetobacter junii SH205]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
++ N++AR++Y I FEAG+ L G EVKSLR ++ +S+SY F+N E +L
Sbjct: 8 KKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMTLSESYVIFKNGEAFLF 67
Query: 67 NSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
S I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ L K+
Sbjct: 68 GSQIQPLLSASTHVVPESTRTRKLLLSRRELEKLLGAVNQKGYSCVPLACYWKGH-LVKL 126
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
++AL +GK+ +DKR TEK RDW R K R+L
Sbjct: 127 EIALVKGKQLHDKRATEKDRDWQRDKARML 156
>gi|254361094|ref|ZP_04977239.1| tmRNA-binding protein SmpB [Mannheimia haemolytica PHL213]
gi|261493579|ref|ZP_05990099.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261495417|ref|ZP_05991865.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|153092580|gb|EDN73635.1| tmRNA-binding protein SmpB [Mannheimia haemolytica PHL213]
gi|261308922|gb|EEY10177.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261310761|gb|EEY11944.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 159
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVK+LR K NISDSY F + E
Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRAGKGNISDSYVIFRHGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL+KRE+ L+ V R+G T+V +Y+
Sbjct: 61 AFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKVNREGYTIVATSMYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + LA+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157
>gi|302560370|ref|ZP_07312712.1| SsrA-binding protein [Streptomyces griseoflavus Tu4000]
gi|302477988|gb|EFL41081.1| SsrA-binding protein [Streptomyces griseoflavus Tu4000]
Length = 159
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + ++
Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDD 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF
Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G AK+++ALA+GKK YDKR+T +++ R+ + +
Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRRETEKAI 150
>gi|73541550|ref|YP_296070.1| SsrA-binding protein [Ralstonia eutropha JMP134]
gi|123624835|sp|Q470F7|SSRP_RALEJ RecName: Full=SsrA-binding protein
gi|72118963|gb|AAZ61226.1| SsrA-binding protein [Ralstonia eutropha JMP134]
Length = 150
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I FEAGIVL G EVK++R +V I + Y + E++L ++I
Sbjct: 2 TIADNKKAFFDYFIEERFEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ N P R RKLLL EI +L V + G TLVP+ +++ +G K ++ L +
Sbjct: 62 LQSASTHVNPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLGK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKRETEK+RDW R+K RI++
Sbjct: 121 GKKLFDKRETEKQRDWQREKSRIMK 145
>gi|254452749|ref|ZP_05066186.1| SsrA-binding protein [Octadecabacter antarcticus 238]
gi|198267155|gb|EDY91425.1| SsrA-binding protein [Octadecabacter antarcticus 238]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K NP KV+++NR+ARY++ I E GI+L G+EVKSLRV + NI+DSYAT
Sbjct: 1 MAKKPDQNPNYKVIAENRRARYDFAIESDVECGIILAGSEVKSLRVGQSNIADSYATVAE 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H R RKLL+SKRE+ R+ A+ R+GMTLVP+ +YFN K
Sbjct: 61 GELWLINSYIAPYQQAM-FPHEDRSRRKLLVSKRELVRMGNAISREGMTLVPLVMYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ +A+A+GK+ DKR TE RDW RQK R+LR
Sbjct: 120 GRVKVKIAIAKGKQKQDKRATEAARDWGRQKARLLRH 156
>gi|307729351|ref|YP_003906575.1| SsrA-binding protein [Burkholderia sp. CCGE1003]
gi|307583886|gb|ADN57284.1| SsrA-binding protein [Burkholderia sp. CCGE1003]
Length = 148
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK+LR + I + Y +N E++L ++I
Sbjct: 3 IIDNRKAFFDYSIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNGELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKLHDKRETEKKRDWEREKARLMR 145
>gi|89052522|ref|YP_507973.1| SsrA-binding protein [Jannaschia sp. CCS1]
gi|122499900|sp|Q28WG4|SSRP_JANSC RecName: Full=SsrA-binding protein
gi|88862071|gb|ABD52948.1| SsrA-binding protein [Jannaschia sp. CCS1]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K NP KV+++NR+AR++Y I E GI+L G+EVKSLR + NI++SYA +
Sbjct: 1 MAKKP-DNPNYKVIAENRRARFDYAIESDLEVGIILEGSEVKSLRQGQSNIAESYAEVKE 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y+QA F H +R RK+L+S++E+ +L+ A +R+GMTLVP+ +YFN K
Sbjct: 60 GELWLVNSYIAPYVQAKTFGHEEKRRRKMLVSRKELSKLWNATQREGMTLVPIVMYFNHK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K+ + +A+GKK DKRET KRDW+RQK R+L+++
Sbjct: 120 GLVKLKIGIAKGKKAQDKRETSAKRDWNRQKARLLKQN 157
>gi|154706819|ref|YP_001424745.1| SsrA-binding protein [Coxiella burnetii Dugway 5J108-111]
gi|212212314|ref|YP_002303250.1| SsrA-binding protein [Coxiella burnetii CbuG_Q212]
gi|189046824|sp|A9KGA3|SSRP_COXBN RecName: Full=SsrA-binding protein
gi|226706521|sp|B6IZH7|SSRP_COXB2 RecName: Full=SsrA-binding protein
gi|154356105|gb|ABS77567.1| SsrA-binding protein [Coxiella burnetii Dugway 5J108-111]
gi|212010724|gb|ACJ18105.1| ssrA-binding protein [Coxiella burnetii CbuG_Q212]
Length = 159
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F+
Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKG 60
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +++ P+R+RKLLL+KREI +L+ AV++ G+T+VP+ ++++
Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H
Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158
>gi|330807460|ref|YP_004351922.1| SsrA-binding protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375568|gb|AEA66918.1| SsrA-binding protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 160
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I + FEAG+VL G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEQRFEAGMVLAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+ + P R+RKLLL+KRE+ +L+A+V++ G T V +Y++
Sbjct: 59 GEAWLLGSHFTPLTTASTHVIADPTRSRKLLLNKRELEKLFASVQQKGYTCVCTSLYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR+TE++RD R+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNK 156
>gi|323137552|ref|ZP_08072629.1| SsrA-binding protein [Methylocystis sp. ATCC 49242]
gi|322397178|gb|EFX99702.1| SsrA-binding protein [Methylocystis sp. ATCC 49242]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 91/157 (57%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FEND 61
+ + +P KVV+DNRKAR++Y I +FEAGI LTGTEVKSLR K I++SY
Sbjct: 1 MAPKQDPNFKVVADNRKARFHYEIGETFEAGISLTGTEVKSLRTGKATIAESYCHVDRQG 60
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL N+ IPEYL NRFNH P+R RKLLL KRE+ +L AV R+GMT+VP+K+YFNAKG
Sbjct: 61 EAWLVNANIPEYLAGNRFNHEPKRLRKLLLKKRELAKLAQAVEREGMTIVPLKLYFNAKG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ +A+ +GKK +DKRE EKKRDW R+K R++R+
Sbjct: 121 RAKLTIAMGRGKKLHDKREVEKKRDWSREKGRLMRDK 157
>gi|116671208|ref|YP_832141.1| SsrA-binding protein [Arthrobacter sp. FB24]
gi|166222356|sp|A0JYC1|SSRP_ARTS2 RecName: Full=SsrA-binding protein
gi|116611317|gb|ABK04041.1| SsrA-binding protein [Arthrobacter sp. FB24]
Length = 156
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KVV+ NRKAR++YH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+
Sbjct: 3 KESGRKVVATNRKARHDYHVLDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWME 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY Q + NH RR RKLLL + E+ ++ +R G T+VP+++YF G AK++
Sbjct: 63 GIHIPEYNQGSWTNHSARRRRKLLLHREELTKISHKIRESGFTIVPLQLYFLD-GKAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ +A+GKK YDKR+T +++ R+ R++RE N
Sbjct: 122 IGVARGKKEYDKRQTLREQQDKREALRVMRERN 154
>gi|46579241|ref|YP_010049.1| SsrA-binding protein [Desulfovibrio vulgaris str. Hildenborough]
gi|120603196|ref|YP_967596.1| SsrA-binding protein [Desulfovibrio vulgaris DP4]
gi|61216558|sp|Q72DV1|SSRP_DESVH RecName: Full=SsrA-binding protein
gi|166223214|sp|A1VFF3|SSRP_DESVV RecName: Full=SsrA-binding protein
gi|46448655|gb|AAS95308.1| SsrA-binding protein [Desulfovibrio vulgaris str. Hildenborough]
gi|120563425|gb|ABM29169.1| SsrA-binding protein [Desulfovibrio vulgaris DP4]
gi|311233070|gb|ADP85924.1| SsrA-binding protein [Desulfovibrio vulgaris RCH1]
Length = 154
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K+ P V++ N+KAR+ Y + + EAGI LTG+EVKSLR VN DSY F N
Sbjct: 1 MSKKA---PGANVIAQNKKARHIYELSDNHEAGISLTGSEVKSLRAGHVNFRDSYVDFRN 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L +I Y A H P R+RKLLL EI L +V + G T+VP K+YF A+
Sbjct: 58 GEAFLVGLHIAPYDNAGYAQHDPDRDRKLLLHAHEIENLARSVEQKGYTVVPTKLYF-AR 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+D+A+ +GKK +D+RE K+R DR R L
Sbjct: 117 GKVKVDIAVGRGKKLHDQREDLKRRAEDRDTQRELARF 154
>gi|124516510|gb|EAY58018.1| SsrA-binding protein [Leptospirillum rubarum]
gi|206603413|gb|EDZ39893.1| SsrA-binding protein [Leptospirillum sp. Group II '5-way CG']
Length = 163
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 101/158 (63%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++ + NRKA + Y ++ FEAGI L GTEVK+LR +VN+ D++ EN
Sbjct: 1 MAGKDQSDSRERATATNRKAFHQYEVLERFEAGIALYGTEVKALRDGRVNLGDAFVRIEN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL +I Y A NH P R R+LLL K+EI RL VR+ G+T+VP++IY +
Sbjct: 61 EEAWLWQLHIGPYRAAFYDNHEPLRKRRLLLHKKEILRLMGLVRQKGLTVVPLRIYSGPR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K+++AL +GK DKR+ ++R+ +R+ R+ R
Sbjct: 121 GLFKVEIALVRGKTQGDKRDAIREREANREIQRVFRSK 158
>gi|315924006|ref|ZP_07920234.1| SsrA-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
gi|315622846|gb|EFV02799.1| SsrA-binding protein [Pseudoramibacter alactolyticus ATCC 23263]
Length = 151
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 72/148 (48%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ K+V+ NRKAR++Y I ++E G+VLTGTEVKSLR KVN+ +S+A F + E+W+
Sbjct: 2 SDAIKIVAKNRKARHDYFIDDTYECGLVLTGTEVKSLRQGKVNLKESFADFRHGELWVYQ 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I Y Q N +N P R RKLLL KRE+ RL +RDG TLVP+ +YF G K++L
Sbjct: 62 MNIAPYEQGNIYNQDPLRVRKLLLHKRELRRLIGLKQRDGYTLVPLSLYFK-NGRVKLEL 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRIL 155
ALA+GKK YDKR + +RD +R+ + +
Sbjct: 121 ALAKGKKLYDKRHSIAERDANRRIQKSI 148
>gi|269128200|ref|YP_003301570.1| SsrA-binding protein [Thermomonospora curvata DSM 43183]
gi|268313158|gb|ACY99532.1| SsrA-binding protein [Thermomonospora curvata DSM 43183]
Length = 162
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 103/146 (70%), Gaps = 1/146 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K+V+ N++ARY+Y + ++EAG+VLTGTEVKSLR + ++ D Y ++ E+WL
Sbjct: 5 TGRKLVAQNKRARYDYDLGDTWEAGLVLTGTEVKSLRAGRASLVDGYGRIKDGEVWLEGV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY+Q NH PRR RKLLL +REI+++ A + G+T+VP+ +YF G AK+++A
Sbjct: 65 HIPEYVQGTWTNHAPRRPRKLLLHRREINKIIAKSKEPGVTIVPLSLYFKD-GKAKVEIA 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRI 154
L +GKK+YDKR+ KR+ +R+ +
Sbjct: 124 LGRGKKSYDKRQAIAKREAEREMAKA 149
>gi|308050619|ref|YP_003914185.1| SsrA-binding protein [Ferrimonas balearica DSM 9799]
gi|307632809|gb|ADN77111.1| SsrA-binding protein [Ferrimonas balearica DSM 9799]
Length = 162
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + P ++ N+KA++ Y + FEAG+ L G EVKS+R KVN++D Y
Sbjct: 1 MAKKNAKKSTPTSSTIALNKKAKHEYKFLEKFEAGLALQGWEVKSMRAGKVNLTDCYVII 60
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E +L I + P R+RKLLL++RE+ RL V + G+T+VP+ +Y+
Sbjct: 61 QRGEAYLVGCNITPLNTASTHVVCEPMRSRKLLLNRRELDRLIGQVEQKGLTIVPVALYW 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
K AK+++ALAQGK+ +DKR+ K+RDW R+K R+++
Sbjct: 121 K-KSFAKLEIALAQGKQTHDKRQDSKERDWQREKARVMK 158
>gi|282865188|ref|ZP_06274241.1| SsrA-binding protein [Streptomyces sp. ACTE]
gi|282560111|gb|EFB65660.1| SsrA-binding protein [Streptomyces sp. ACTE]
Length = 162
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +K+++ N+KAR++Y I+ ++E G+VL GTEVKSLR+ + ++ D + +NDE
Sbjct: 1 MAKEKDTGRKMIAQNKKARHDYLILDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDNDE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N ++PEY+Q NH +R RKLLL + EI +L + + G T+VP+ +YF G
Sbjct: 61 AWLHNIHVPEYVQGTWTNHSAKRKRKLLLHRAEIDKLASKSQETGHTIVPLALYFKD-GR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQ 150
K+++ALA+GKK +DKR+T +++ R+
Sbjct: 120 VKVEIALAKGKKEFDKRQTLREKQDTRE 147
>gi|93005189|ref|YP_579626.1| SsrA-binding protein [Psychrobacter cryohalolentis K5]
gi|122415968|sp|Q1QDW1|SSRP_PSYCK RecName: Full=SsrA-binding protein
gi|92392867|gb|ABE74142.1| SsrA-binding protein [Psychrobacter cryohalolentis K5]
Length = 158
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P+ + N+KAR+ Y I +FEAG+ L G EVK++R K+ I+++Y F N+E
Sbjct: 1 MSKKSKKPENQICANKKARHEYFIEETFEAGLSLQGWEVKAIRAGKMTITEAYIIFRNNE 60
Query: 63 IWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L ++I P + + R RKLLL++REI +L AV + G VP+ Y+
Sbjct: 61 AFLFGAHIQPLLSSSTHVSPDSIRTRKLLLNRREIEKLMGAVNQKGYACVPLSCYWK-NS 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K + LA GKK +DKR+T K RDW+R K R ++
Sbjct: 120 LVKCQIGLALGKKQHDKRKTLKDRDWERDKQRGFKK 155
>gi|297528817|ref|YP_003670092.1| SsrA-binding protein [Geobacillus sp. C56-T3]
gi|297252069|gb|ADI25515.1| SsrA-binding protein [Geobacillus sp. C56-T3]
Length = 155
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I
Sbjct: 7 KVIAQNKKAHHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ R+ R RE
Sbjct: 126 GKKKYDKREDMKRKEAQREIERAFRER 152
>gi|229164065|ref|ZP_04292002.1| hypothetical protein bcere0009_48270 [Bacillus cereus R309803]
gi|228619448|gb|EEK76337.1| hypothetical protein bcere0009_48270 [Bacillus cereus R309803]
Length = 178
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 30 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIS 89
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 90 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 148
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKR K+++ R+ R R+
Sbjct: 149 GKKQFDKRHDLKEKEAKREIARAFRDR 175
>gi|296158884|ref|ZP_06841712.1| SsrA-binding protein [Burkholderia sp. Ch1-1]
gi|295890759|gb|EFG70549.1| SsrA-binding protein [Burkholderia sp. Ch1-1]
Length = 148
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y N+E++L ++I
Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNNELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKQHDKRETEKKRDWEREKARLMR 145
>gi|317055638|ref|YP_004104105.1| SsrA-binding protein [Ruminococcus albus 7]
gi|315447907|gb|ADU21471.1| SsrA-binding protein [Ruminococcus albus 7]
Length = 157
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M++ + K ++DNRKAR++Y I+ + E GI L GTEVKS+R VN+ DS+ + ++
Sbjct: 1 MAIDKK---GTKQIADNRKARHDYFILETIECGIELVGTEVKSIRKGGVNLKDSWCSVDD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ +I Y Q N FN PRR R+LLL KREI RL+ V+++G+ L+P+ +YF
Sbjct: 58 GEMWVKGMHISPYEQGNIFNKDPRRVRRLLLHKREIMRLFGQVQQEGLALIPLSLYFKGS 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L L +GKK +DKR+ K+ DR+ R L++
Sbjct: 118 -RVKLALGLCKGKKLHDKRDDMAKKAADREIERALKDR 154
>gi|15610237|ref|NP_217616.1| SsrA-binding protein [Mycobacterium tuberculosis H37Rv]
gi|15842671|ref|NP_337708.1| SsrA-binding protein [Mycobacterium tuberculosis CDC1551]
gi|31794279|ref|NP_856772.1| SsrA-binding protein [Mycobacterium bovis AF2122/97]
gi|121638985|ref|YP_979209.1| SsrA-binding protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|148662954|ref|YP_001284477.1| SsrA-binding protein [Mycobacterium tuberculosis H37Ra]
gi|148824292|ref|YP_001289046.1| SsrA-binding protein [Mycobacterium tuberculosis F11]
gi|167969707|ref|ZP_02551984.1| SsrA-binding protein [Mycobacterium tuberculosis H37Ra]
gi|215405096|ref|ZP_03417277.1| SsrA-binding protein [Mycobacterium tuberculosis 02_1987]
gi|215412964|ref|ZP_03421665.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A]
gi|215428553|ref|ZP_03426472.1| SsrA-binding protein [Mycobacterium tuberculosis T92]
gi|215432056|ref|ZP_03429975.1| SsrA-binding protein [Mycobacterium tuberculosis EAS054]
gi|215447382|ref|ZP_03434134.1| SsrA-binding protein [Mycobacterium tuberculosis T85]
gi|218754870|ref|ZP_03533666.1| SsrA-binding protein [Mycobacterium tuberculosis GM 1503]
gi|219559142|ref|ZP_03538218.1| SsrA-binding protein [Mycobacterium tuberculosis T17]
gi|224991477|ref|YP_002646166.1| SsrA-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|253797799|ref|YP_003030800.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 1435]
gi|254233724|ref|ZP_04927049.1| Ssra-binding protein smpB [Mycobacterium tuberculosis C]
gi|254365728|ref|ZP_04981773.1| Ssra-binding protein smpB [Mycobacterium tuberculosis str. Haarlem]
gi|254552180|ref|ZP_05142627.1| SsrA-binding protein [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|260188136|ref|ZP_05765610.1| SsrA-binding protein [Mycobacterium tuberculosis CPHL_A]
gi|260202242|ref|ZP_05769733.1| SsrA-binding protein [Mycobacterium tuberculosis T46]
gi|260206436|ref|ZP_05773927.1| SsrA-binding protein [Mycobacterium tuberculosis K85]
gi|289444664|ref|ZP_06434408.1| SsrA-binding protein [Mycobacterium tuberculosis T46]
gi|289448779|ref|ZP_06438523.1| ssra-binding protein smpB [Mycobacterium tuberculosis CPHL_A]
gi|289553108|ref|ZP_06442318.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 605]
gi|289571307|ref|ZP_06451534.1| ssra-binding protein smpB [Mycobacterium tuberculosis T17]
gi|289575812|ref|ZP_06456039.1| ssra-binding protein smpB [Mycobacterium tuberculosis K85]
gi|289746910|ref|ZP_06506288.1| small protein B [Mycobacterium tuberculosis 02_1987]
gi|289751776|ref|ZP_06511154.1| ssra-binding protein smpB [Mycobacterium tuberculosis T92]
gi|289755218|ref|ZP_06514596.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis EAS054]
gi|289759226|ref|ZP_06518604.1| ssra-binding protein smpB [Mycobacterium tuberculosis T85]
gi|289763279|ref|ZP_06522657.1| ssra-binding protein smpB [Mycobacterium tuberculosis GM 1503]
gi|294993393|ref|ZP_06799084.1| SsrA-binding protein [Mycobacterium tuberculosis 210]
gi|297635735|ref|ZP_06953515.1| SsrA-binding protein [Mycobacterium tuberculosis KZN 4207]
gi|297732734|ref|ZP_06961852.1| SsrA-binding protein [Mycobacterium tuberculosis KZN R506]
gi|298526573|ref|ZP_07013982.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A]
gi|306777410|ref|ZP_07415747.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu001]
gi|306781313|ref|ZP_07419650.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu002]
gi|306785955|ref|ZP_07424277.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu003]
gi|306790309|ref|ZP_07428631.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu004]
gi|306794803|ref|ZP_07433105.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu005]
gi|306799045|ref|ZP_07437347.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu006]
gi|306804889|ref|ZP_07441557.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu008]
gi|306809080|ref|ZP_07445748.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu007]
gi|306969182|ref|ZP_07481843.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu009]
gi|306973526|ref|ZP_07486187.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu010]
gi|307081236|ref|ZP_07490406.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu011]
gi|307085835|ref|ZP_07494948.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu012]
gi|313660066|ref|ZP_07816946.1| SsrA-binding protein [Mycobacterium tuberculosis KZN V2475]
gi|61247736|sp|P0A612|SSRP_MYCTU RecName: Full=SsrA-binding protein
gi|61247737|sp|P0A613|SSRP_MYCBO RecName: Full=SsrA-binding protein
gi|166223227|sp|A1KN98|SSRP_MYCBP RecName: Full=SsrA-binding protein
gi|166223229|sp|A5U7B5|SSRP_MYCTA RecName: Full=SsrA-binding protein
gi|254778371|sp|C1AGL9|SSRP_MYCBT RecName: Full=SsrA-binding protein
gi|2076675|emb|CAB08390.1| PROBABLE SSRA-BINDING PROTEIN SMPB [Mycobacterium tuberculosis
H37Rv]
gi|13882990|gb|AAK47522.1| small protein B [Mycobacterium tuberculosis CDC1551]
gi|31619874|emb|CAD96814.1| PROBABLE SSRA-BINDING PROTEIN SMPB [Mycobacterium bovis AF2122/97]
gi|121494633|emb|CAL73114.1| Probable ssrA-binding protein smpB [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124599253|gb|EAY58357.1| Ssra-binding protein smpB [Mycobacterium tuberculosis C]
gi|134151241|gb|EBA43286.1| Ssra-binding protein smpB [Mycobacterium tuberculosis str. Haarlem]
gi|148507106|gb|ABQ74915.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis H37Ra]
gi|148722819|gb|ABR07444.1| Ssra-binding protein smpB [Mycobacterium tuberculosis F11]
gi|224774592|dbj|BAH27398.1| SsrA-binding protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|253319302|gb|ACT23905.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 1435]
gi|289417583|gb|EFD14823.1| SsrA-binding protein [Mycobacterium tuberculosis T46]
gi|289421737|gb|EFD18938.1| ssra-binding protein smpB [Mycobacterium tuberculosis CPHL_A]
gi|289437740|gb|EFD20233.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 605]
gi|289540243|gb|EFD44821.1| ssra-binding protein smpB [Mycobacterium tuberculosis K85]
gi|289545061|gb|EFD48709.1| ssra-binding protein smpB [Mycobacterium tuberculosis T17]
gi|289687438|gb|EFD54926.1| small protein B [Mycobacterium tuberculosis 02_1987]
gi|289692363|gb|EFD59792.1| ssra-binding protein smpB [Mycobacterium tuberculosis T92]
gi|289695805|gb|EFD63234.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis EAS054]
gi|289710785|gb|EFD74801.1| ssra-binding protein smpB [Mycobacterium tuberculosis GM 1503]
gi|289714790|gb|EFD78802.1| ssra-binding protein smpB [Mycobacterium tuberculosis T85]
gi|298496367|gb|EFI31661.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A]
gi|308214298|gb|EFO73697.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu001]
gi|308325950|gb|EFP14801.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu002]
gi|308329475|gb|EFP18326.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu003]
gi|308333321|gb|EFP22172.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu004]
gi|308336975|gb|EFP25826.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu005]
gi|308340789|gb|EFP29640.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu006]
gi|308344657|gb|EFP33508.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu007]
gi|308348607|gb|EFP37458.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu008]
gi|308353332|gb|EFP42183.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu009]
gi|308357166|gb|EFP46017.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu010]
gi|308361117|gb|EFP49968.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu011]
gi|308364652|gb|EFP53503.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu012]
gi|323718331|gb|EGB27509.1| ssra-binding protein smpB [Mycobacterium tuberculosis CDC1551A]
gi|326902677|gb|EGE49610.1| ssra-binding protein smpB [Mycobacterium tuberculosis W-148]
gi|328457578|gb|AEB03001.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 4207]
Length = 160
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +++V+ NRKAR+NY I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E
Sbjct: 1 MSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N++IPEY + NH PRRNRKLLL +R+I L +R LVP+ +YF G
Sbjct: 61 VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK+ DKR+ +RD R+ R L
Sbjct: 120 VKVELALARGKQARDKRQDMARRDAQREVLRELGRR 155
>gi|254425070|ref|ZP_05038788.1| SsrA-binding protein [Synechococcus sp. PCC 7335]
gi|196192559|gb|EDX87523.1| SsrA-binding protein [Synechococcus sp. PCC 7335]
Length = 163
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 5/163 (3%)
Query: 1 MSL---KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ K+ KV++DNR+ARY Y I+ ++EAGIVLTGTEVKS+R KVN+ D +A
Sbjct: 1 MAKPDNKTSKGGGVKVIADNRQARYQYEILDTYEAGIVLTGTEVKSIREGKVNLRDGFAN 60
Query: 58 FENDEIWLTNSYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
+ E+WL N +I + N +NH PRR RKLLL ++EI +L V + G+TLVP+K+Y
Sbjct: 61 VKRGEVWLHNVHISPHSMTNLAYNHEPRRVRKLLLHRQEIRKLIGQVEQKGLTLVPLKMY 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ AL +GKK +DKR++ KK+ R R ++ N
Sbjct: 121 LKG-GKVKVSFALGRGKKLHDKRDSLKKKQDKRDMARAMKSAN 162
>gi|88608497|ref|YP_506683.1| SsrA-binding protein [Neorickettsia sennetsu str. Miyayama]
gi|123491468|sp|Q2GCW3|SSRP_NEOSM RecName: Full=SsrA-binding protein
gi|88600666|gb|ABD46134.1| SsrA-binding protein [Neorickettsia sennetsu str. Miyayama]
Length = 147
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/142 (48%), Positives = 103/142 (72%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y ++ FEAGIVL GTEVK+L+ ++++++ F E+WL N ++P
Sbjct: 2 KVIAINKKARFDYSLIDEFEAGIVLLGTEVKALKYHSASLNEAFVAFRRFELWLNNMHVP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A+RFNH P R+RKLL+ KR+++++ AVR G+TLVP+ IY N GL K+ ALA+
Sbjct: 62 PYKPASRFNHVPTRSRKLLVHKRQLNKISGAVRTKGLTLVPLSIYVNENGLIKVKFALAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHR 153
GKK +DKR+ K RDW R++ R
Sbjct: 122 GKKKHDKRQDIKDRDWARKQAR 143
>gi|15599962|ref|NP_253456.1| SsrA-binding protein [Pseudomonas aeruginosa PAO1]
gi|107103865|ref|ZP_01367783.1| hypothetical protein PaerPA_01004936 [Pseudomonas aeruginosa PACS2]
gi|116052915|ref|YP_793232.1| SsrA-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|152988108|ref|YP_001350810.1| SsrA-binding protein [Pseudomonas aeruginosa PA7]
gi|218893863|ref|YP_002442732.1| SsrA-binding protein [Pseudomonas aeruginosa LESB58]
gi|254238497|ref|ZP_04931820.1| SmpB protein [Pseudomonas aeruginosa C3719]
gi|254244331|ref|ZP_04937653.1| SmpB protein [Pseudomonas aeruginosa 2192]
gi|296391595|ref|ZP_06881070.1| SsrA-binding protein [Pseudomonas aeruginosa PAb1]
gi|22096178|sp|Q9HV40|SSRP_PSEAE RecName: Full=SsrA-binding protein
gi|122257074|sp|Q02FQ4|SSRP_PSEAB RecName: Full=SsrA-binding protein
gi|166223238|sp|A6VCM5|SSRP_PSEA7 RecName: Full=SsrA-binding protein
gi|226734259|sp|B7V1I0|SSRP_PSEA8 RecName: Full=SsrA-binding protein
gi|9951032|gb|AAG08154.1|AE004890_7 SmpB protein [Pseudomonas aeruginosa PAO1]
gi|115588136|gb|ABJ14151.1| ssrA(tmRNA)-binding protein (small protein B) [Pseudomonas
aeruginosa UCBPP-PA14]
gi|126170428|gb|EAZ55939.1| SmpB protein [Pseudomonas aeruginosa C3719]
gi|126197709|gb|EAZ61772.1| SmpB protein [Pseudomonas aeruginosa 2192]
gi|150963266|gb|ABR85291.1| SsrA-binding protein [Pseudomonas aeruginosa PA7]
gi|218774091|emb|CAW29907.1| SmpB protein [Pseudomonas aeruginosa LESB58]
Length = 159
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KA ++Y I + FEAG+ L G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKHPSG--TIAQNKKALHDYFIEQRFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL KRE+ +L+ AV++ G V + +Y+
Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLHKRELGKLFGAVQQKGYACVALSMYWKK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K ++ALA+GKK++DKR TEK+RD DR+ R +R
Sbjct: 119 H-LVKCEIALAKGKKDFDKRHTEKERDSDREIQRAMRH 155
>gi|21673399|ref|NP_661464.1| SsrA-binding protein [Chlorobium tepidum TLS]
gi|27734571|sp|Q8KEW8|SSRP_CHLTE RecName: Full=SsrA-binding protein
gi|21646498|gb|AAM71806.1| smpB family protein [Chlorobium tepidum TLS]
Length = 157
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K +G P NRKAR+ Y I+ + EAGI L G+EVKS+R+ K ++S+SYA +
Sbjct: 1 MSKK-QGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHH 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
++WL N I Y P+R+R+LLL K EI RL + + G+TL+P+K YFN +
Sbjct: 60 GQVWLENMQITPYEHNTLDTLEPKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ KI+L LA+GKK YDKRET K RD RQ ++ +++
Sbjct: 120 GVLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY 157
>gi|70734314|ref|YP_257954.1| SsrA-binding protein [Pseudomonas fluorescens Pf-5]
gi|123658151|sp|Q4KIH9|SSRP_PSEF5 RecName: Full=SsrA-binding protein
gi|68348613|gb|AAY96219.1| SsrA-binding protein [Pseudomonas fluorescens Pf-5]
Length = 160
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHRFEAGMVLAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+ + P R+RKLLL++RE+ +L+AAV++ G V + +Y++
Sbjct: 59 GEAWLLGSHFTPLTTASTHVIADPTRSRKLLLNQRELEKLFAAVQQKGYACVCLSLYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LVKCEIALGKGKKEYDKRHTERERDSDRELQRAVRTK 156
>gi|74317774|ref|YP_315514.1| SsrA-binding protein [Thiobacillus denitrificans ATCC 25259]
gi|123611654|sp|Q3SI24|SSRP_THIDA RecName: Full=SsrA-binding protein
gi|74057269|gb|AAZ97709.1| tmRNA-binding protein SmpB [Thiobacillus denitrificans ATCC 25259]
Length = 149
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++DN+KA ++Y I FEAG+VL G EVK++R +V + ++Y +N ++L +I
Sbjct: 3 IADNKKAFHDYFIEERFEAGLVLEGWEVKAIRAGRVQLKEAYVVVKNGAVYLIGCHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R+RKLLL EI++L R G TLVP+ ++++ KG K+++ LA+G
Sbjct: 63 PTASTHIHPDPTRSRKLLLHAAEINKLIGKTERAGFTLVPLDMHYS-KGRIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKR EK R+W R+K R++R
Sbjct: 122 KKQHDKRAAEKDREWQREKQRLVR 145
>gi|322514580|ref|ZP_08067613.1| SsrA-binding protein [Actinobacillus ureae ATCC 25976]
gi|322119519|gb|EFX91606.1| SsrA-binding protein [Actinobacillus ureae ATCC 25976]
Length = 159
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E
Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L + I + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+
Sbjct: 61 AFLFGATITPLNMASTHIVCDPARTRKLLLNKRELDSLFGKVNRDGMTVVALSLYWK-NA 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKRE K R+W K RI++ N
Sbjct: 120 WAKVKVGVAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157
>gi|187611498|sp|Q39V47|SSRP_GEOMG RecName: Full=SsrA-binding protein
Length = 153
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I FEAG+VL GTEVKSLR+ K N++DS+A + EI+L N +
Sbjct: 2 GEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLL+ K EI +L+ +R G ++VP+++YF GLAK++L L
Sbjct: 62 INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R+ + LRE +
Sbjct: 121 AKGKKLYDKREDMKKKDQSREMAQALRERS 150
>gi|300691583|ref|YP_003752578.1| RNA-binding protein, component of the SsrA quality-control system
[Ralstonia solanacearum PSI07]
gi|299078643|emb|CBJ51301.1| RNA-binding protein, component of the SsrA quality-control system
[Ralstonia solanacearum PSI07]
Length = 148
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++N+KA ++Y I +EAGI L G EVK++R + I + Y + E++L ++I
Sbjct: 2 TIAENKKAFFDYFIEERYEAGIALEGWEVKAIRAGRSQIKEGYVVIRDAELFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLL EI +L V + G TLVP+ +++ A+G K ++ LA+
Sbjct: 62 LQSASTHVKPDPTRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHY-ARGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRETEK RDW R+K R++RE
Sbjct: 121 GKKLYDKRETEKNRDWQREKARLMREK 147
>gi|229187337|ref|ZP_04314480.1| hypothetical protein bcere0004_48720 [Bacillus cereus BGSC 6E1]
gi|228596041|gb|EEK53718.1| hypothetical protein bcere0004_48720 [Bacillus cereus BGSC 6E1]
Length = 178
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 26 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 85
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L
Sbjct: 86 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLAGASKETGYALVPVRIYLK-NGFAKMAL 144
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R R+
Sbjct: 145 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 175
>gi|307266965|ref|ZP_07548482.1| SsrA-binding protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|306918014|gb|EFN48271.1| SsrA-binding protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 156
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+++ N+KA ++Y I ++EAGIVL+GTEVKS+R+ KVN+ DS+A EN+E++L N
Sbjct: 3 KEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +G K++L
Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGRVKVEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+A+GKK YDKRE +RD R+ + +E
Sbjct: 122 AVARGKKLYDKREDIARRDAKRELEKHFKEK 152
>gi|88811747|ref|ZP_01127001.1| SsrA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791138|gb|EAR22251.1| SsrA-binding protein [Nitrococcus mobilis Nb-231]
Length = 163
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 7/160 (4%)
Query: 5 SRGNPPKKV-----VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
S+ NP K +S NR+AR++YHI +FEAG+VL G EVK+LR + ++ +SY +
Sbjct: 4 SKQNPKSKAGNSPNISVNRRARHDYHIEDTFEAGLVLEGWEVKALRAGRGSLQESYVIIK 63
Query: 60 NDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E WL I + P R RKLLL +RE+ RL A + G TLVP+ +++
Sbjct: 64 DGEAWLIGCNISPLPTASTHIQPDPIRTRKLLLHERELSRLIGATEQRGYTLVPLNMHWK 123
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AK+DLALA+GKK +DKR +K+ DW R+K R+L+
Sbjct: 124 -RGRAKLDLALAKGKKKFDKRAAQKEHDWQREKQRLLKHR 162
>gi|94310398|ref|YP_583608.1| SsrA-binding protein [Cupriavidus metallidurans CH34]
gi|166223443|sp|Q1LND7|SSRP_RALME RecName: Full=SsrA-binding protein
gi|93354250|gb|ABF08339.1| trans-translation protein [Cupriavidus metallidurans CH34]
Length = 150
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I +EAGIVL G EVK++R +V I + Y + E++L ++I
Sbjct: 2 TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ N P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+
Sbjct: 62 LQSASTHINPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKRETEK RDWDR+K RI++
Sbjct: 121 GKKQFDKRETEKNRDWDREKARIMK 145
>gi|225020769|ref|ZP_03709961.1| hypothetical protein CORMATOL_00776 [Corynebacterium matruchotii
ATCC 33806]
gi|305680214|ref|ZP_07403024.1| SsrA-binding protein [Corynebacterium matruchotii ATCC 14266]
gi|224946471|gb|EEG27680.1| hypothetical protein CORMATOL_00776 [Corynebacterium matruchotii
ATCC 33806]
gi|305660834|gb|EFM50331.1| SsrA-binding protein [Corynebacterium matruchotii ATCC 14266]
Length = 164
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKAR++Y+I+ ++E G+VL GTEVKSLR K ++ D++AT ++ E+WL N +IPE
Sbjct: 14 TIATNRKARHDYNILETYECGMVLVGTEVKSLREGKASLVDAFATIDDGEVWLRNLHIPE 73
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + + NH PRR RKLLL +REI L VR TLVP+ +YF G K +L LAQG
Sbjct: 74 YSRGHWTNHSPRRVRKLLLHRREIDTLTGKVRDGNKTLVPLSLYFK-NGHLKCELGLAQG 132
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K+ YDKR+ K+R +R+ R L
Sbjct: 133 KQAYDKRQDIKRRTEEREIVRDLGRR 158
>gi|206603343|gb|EDZ39823.1| SsrA-binding protein [Leptospirillum sp. Group II '5-way CG']
Length = 163
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 101/158 (63%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + +K + NRKA + Y ++ FEAGI L GTEVK+LR +VN+ D++ EN
Sbjct: 1 MAGKDQSDSREKATATNRKAFHQYEVLERFEAGIALYGTEVKALRDGRVNLGDAFVRIEN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL +I Y A NH P R R+LLL K+EI RL VR+ G+T+VP++IY +
Sbjct: 61 EEAWLWQLHIGPYRAAFYDNHEPLRKRRLLLHKKEILRLMGLVRQKGLTVVPLRIYSGHR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K+++AL +GK DKR+ ++R+ +R+ R+ R
Sbjct: 121 GLFKVEIALVRGKTQGDKRDAIREREANREIQRVFRSK 158
>gi|288572788|ref|ZP_06391145.1| SsrA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002]
gi|288568529|gb|EFC90086.1| SsrA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002]
Length = 153
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 91/145 (62%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NRKAR++Y I+ +FE G+VLTGTE+KS+R +VN+ D YA E E+WL N +I Y
Sbjct: 6 VAQNRKARHDYFILDTFECGLVLTGTEIKSVRAGRVNLKDGYAKLEKGELWLMNVHISPY 65
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
A+ H P + RKLL+ + EI +L ++ G TLVP+ +Y AKI+L LA+GK
Sbjct: 66 ENASWRQHDPTQRRKLLMHRSEIRKLSGKIKERGFTLVPLSMYIKDGRWAKIELGLAKGK 125
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
+DKR++ + D R R +R
Sbjct: 126 ALHDKRQSLAEEDAKRTMAREIRNR 150
>gi|167747904|ref|ZP_02420031.1| hypothetical protein ANACAC_02634 [Anaerostipes caccae DSM 14662]
gi|167652635|gb|EDR96764.1| hypothetical protein ANACAC_02634 [Anaerostipes caccae DSM 14662]
Length = 156
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K++++N+KAR++Y + + EAGIVL GTEVKS+R +I +++ + +N
Sbjct: 1 MAK----TGGTKLIANNKKARHDYFVEETVEAGIVLFGTEVKSMRQGHCSIKEAFISIDN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLL+ EI R+ + V R G TL+P+++YF
Sbjct: 57 GEVFVKQMHISPYEKGNIFNKDPLRERKLLMHSSEITRMMSEVNRKGYTLIPLRVYFKGS 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ L +GKK YDKR+ K+D R+ R + N
Sbjct: 117 -LVKVEIGLCRGKKLYDKRQDIAKKDQQREAMRDFKVRN 154
>gi|258651902|ref|YP_003201058.1| SsrA-binding protein [Nakamurella multipartita DSM 44233]
gi|258555127|gb|ACV78069.1| SsrA-binding protein [Nakamurella multipartita DSM 44233]
Length = 167
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 101/159 (63%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGN-----PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
M+ ++ +++++ NRKAR++Y I+ ++EAGI LTGTEVKS R + + D Y
Sbjct: 1 MNKIAKTQSSNRPTGRQIIASNRKARHDYEILDTYEAGISLTGTEVKSCRAGRATLVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115
AT DE+WL +I EY + NH PRR RKLLL + EI +L + +R G L+P+ +
Sbjct: 61 ATISEDEVWLRGVHIAEYAEGTWTNHAPRRARKLLLHRSEILKLTSKMRESGTALIPLSL 120
Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154
YF+ G K++L LA+GK+ YDKR++ KRD DR+ R
Sbjct: 121 YFS-NGRVKVELGLARGKREYDKRQSIAKRDADRELERY 158
>gi|281412310|ref|YP_003346389.1| SsrA-binding protein [Thermotoga naphthophila RKU-10]
gi|281373413|gb|ADA66975.1| SsrA-binding protein [Thermotoga naphthophila RKU-10]
Length = 158
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 106/145 (73%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F+N E++L N +IP
Sbjct: 11 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIP 70
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y +NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+
Sbjct: 71 PYSHGGVYNHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVAR 130
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
G+K YDKRE KK++ +R+ ++
Sbjct: 131 GRKKYDKREAIKKKEMERKIREYMK 155
>gi|238928001|ref|ZP_04659761.1| tmRNA-binding protein [Selenomonas flueggei ATCC 43531]
gi|238883961|gb|EEQ47599.1| tmRNA-binding protein [Selenomonas flueggei ATCC 43531]
Length = 157
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N K +NRKAR++Y I ++EAG+ L GTEVKSLR K N+ DSYA +N E++L
Sbjct: 3 KKNEGVKTACENRKARHDYFIHETYEAGMELVGTEVKSLRAGKANLRDSYAYIKNGEVFL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF +G AK+
Sbjct: 63 DHMHISPYDQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-RGKAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK NYDKR++ K++ R + L+
Sbjct: 122 ELALASGKHNYDKRQSLKEKAAKRDVEQALKAR 154
>gi|146283652|ref|YP_001173805.1| SsrA-binding protein [Pseudomonas stutzeri A1501]
gi|166223241|sp|A4VPR2|SSRP_PSEU5 RecName: Full=SsrA-binding protein
gi|145571857|gb|ABP80963.1| SmpB protein [Pseudomonas stutzeri A1501]
gi|327482047|gb|AEA85357.1| SsrA-binding protein [Pseudomonas stutzeri DSM 4166]
Length = 160
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + +P ++ N+KA ++Y I + FEAG+VL G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKQSPG--TIALNKKALHDYFIEQKFEAGLVLAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++I + P R RKLLL+KRE+ +L+ AV++ G V + +Y+
Sbjct: 59 GEAWLMGAHITPLTSASTHVIADPTRTRKLLLNKRELGKLFGAVQQKGYACVALSLYWKK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ K ++ALA+GKK +DKR TEK+RD DR+ R +R
Sbjct: 119 H-MIKCEIALAKGKKEFDKRHTEKERDSDREIQRAMRTK 156
>gi|91784099|ref|YP_559305.1| SsrA-binding protein [Burkholderia xenovorans LB400]
gi|123062783|sp|Q13XD6|SSRP_BURXL RecName: Full=SsrA-binding protein
gi|91688053|gb|ABE31253.1| SsrA-binding protein [Burkholderia xenovorans LB400]
Length = 148
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y +N+E++L ++I
Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNNELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKQHDKRETEKKRDWEREKARLMR 145
>gi|241662966|ref|YP_002981326.1| SsrA-binding protein [Ralstonia pickettii 12D]
gi|309782115|ref|ZP_07676845.1| SsrA-binding protein [Ralstonia sp. 5_7_47FAA]
gi|240864993|gb|ACS62654.1| SsrA-binding protein [Ralstonia pickettii 12D]
gi|308919181|gb|EFP64848.1| SsrA-binding protein [Ralstonia sp. 5_7_47FAA]
Length = 148
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I +EAG+ L G EVK++R ++ I + Y N E++L ++I
Sbjct: 2 TIADNKKAFFDYFIEERYEAGMALEGWEVKAIRANRAQIKEGYVVIRNAELFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ + P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+
Sbjct: 62 LQSASTHVHPDPVRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRETEK RDW R+K R++RE
Sbjct: 121 GKKLFDKRETEKDRDWQREKARLMREK 147
>gi|1694889|emb|CAA49621.1| SmpB [Mycobacterium tuberculosis H37Rv]
Length = 160
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +++V+ NRKAR+NY I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E
Sbjct: 1 MSKSSRGGRQIVARNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N++IPEY + NH PRRNRKLLL +R+I L +R LVP+ +YF G
Sbjct: 61 VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK+ DKR+ +RD R+ R L
Sbjct: 120 VKVELALARGKQARDKRQDMARRDAQREVLRELGRR 155
>gi|86608740|ref|YP_477502.1| SsrA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|123502587|sp|Q2JM08|SSRP_SYNJB RecName: Full=SsrA-binding protein
gi|86557282|gb|ABD02239.1| SsrA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 154
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+P K + DNR+AR+ Y I+ ++EAGI LTGTEVKS+R K N+ D++A F + E WL N
Sbjct: 4 DPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHN 63
Query: 68 SYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I + A++ FNH P R RKLLL +REI RL V + G+T+VP+K+ N +G K
Sbjct: 64 LHISPHDTASKVFNHDPTRRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLN-RGWIKAH 122
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +A+GKK +DKR+ K+R R+ R L+E
Sbjct: 123 LGVARGKKLHDKRQAIKERQTQREIQRELKER 154
>gi|68535528|ref|YP_250233.1| SsrA-binding protein [Corynebacterium jeikeium K411]
gi|123651454|sp|Q4JX42|SSRP_CORJK RecName: Full=SsrA-binding protein
gi|68263127|emb|CAI36615.1| smpB [Corynebacterium jeikeium K411]
Length = 184
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + VV+ NRKAR++YHI+ ++E G+VL GTEVKSLR K ++ D+YAT + E+WL
Sbjct: 27 QKGAGQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWL 86
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+IPEY + NH PRR RKLLL +REI L VR TLVP+++YF A G K+
Sbjct: 87 RGLHIPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVA-GKLKV 145
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA+GK+ YDKR+ K+R +R+ R +
Sbjct: 146 ELALARGKQEYDKRQDIKRRTEEREITREMGRR 178
>gi|255993953|ref|ZP_05427088.1| SsrA-binding protein [Eubacterium saphenum ATCC 49989]
gi|255993621|gb|EEU03710.1| SsrA-binding protein [Eubacterium saphenum ATCC 49989]
Length = 166
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 68/161 (42%), Positives = 104/161 (64%), Gaps = 2/161 (1%)
Query: 1 MSLKSRGNPPKK--VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + ++++NRKA + Y + + +EAGIVLTGTE+KS+R +NI + YA
Sbjct: 1 MAKKGKKTKQDNGHIIANNRKALHEYFVDKRYEAGIVLTGTEIKSIRKGNINIKEGYARI 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
E+ E L +I Y Q N+FN P RNRKLLL ++EI ++ ++ + G TL+P+K+Y
Sbjct: 61 EDGECILFGVHISPYEQGNQFNSPPLRNRKLLLHRQEIRKIMGSLTQKGYTLIPLKVYIT 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G+AK++L L +GKK YDKRE+ K+D R R L+++N
Sbjct: 121 KSGIAKVELGLCRGKKIYDKRESIAKKDAKRNIQRELKKNN 161
>gi|187924413|ref|YP_001896055.1| SsrA-binding protein [Burkholderia phytofirmans PsJN]
gi|187715607|gb|ACD16831.1| SsrA-binding protein [Burkholderia phytofirmans PsJN]
Length = 148
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y +N+E++L ++I
Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNNELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKQHDKRETEKKRDWEREKARLMR 145
>gi|221195428|ref|ZP_03568483.1| SsrA-binding protein [Atopobium rimae ATCC 49626]
gi|221184615|gb|EEE17007.1| SsrA-binding protein [Atopobium rimae ATCC 49626]
Length = 156
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 90/153 (58%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K ++ NR AR+ Y I+ +FE G+VLTGTEVKSLR I+D++ E+WL
Sbjct: 2 DKRERKSIARNRSARHEYEILETFECGVVLTGTEVKSLRDRGTQITDAFCLVRGREVWLH 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y +N P R RKLLL + +I L + +R+ G+ L+P+ + F+ K+
Sbjct: 62 GVHIHPYSNGGVWNVDPDRKRKLLLHRSQITYLDSKLRQKGLALIPLDLLFDTHNRVKLV 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR +RD DR+ R L+E +
Sbjct: 122 IGLARGKKLYDKRADAARRDSDREIQRALKERS 154
>gi|312140586|ref|YP_004007922.1| smpb protein [Rhodococcus equi 103S]
gi|325675792|ref|ZP_08155476.1| SsrA-binding protein [Rhodococcus equi ATCC 33707]
gi|311889925|emb|CBH49242.1| SmpB protein [Rhodococcus equi 103S]
gi|325553763|gb|EGD23441.1| SsrA-binding protein [Rhodococcus equi ATCC 33707]
Length = 157
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +KV++ NRKAR+NY I+ ++EAG+ L GTEVKSLR K ++ D++AT ++ E
Sbjct: 1 MKEK---GRKVIATNRKARHNYTIIDTYEAGVALVGTEVKSLREGKASLVDAFATVDDGE 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL +IPEY + NH PRR RKLLL KREI L R TLVP+ +YF+ G
Sbjct: 58 VWLRGLHIPEYARGTWTNHAPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFSD-GK 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK++YDKR+ +R +R+ R L
Sbjct: 117 VKVELALAKGKQDYDKRQDLARRTAEREVTRELGRR 152
>gi|251793094|ref|YP_003007820.1| SsrA-binding protein [Aggregatibacter aphrophilus NJ8700]
gi|247534487|gb|ACS97733.1| SsrA-binding protein [Aggregatibacter aphrophilus NJ8700]
Length = 160
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKAKVASNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + + + P R RKLLL +RE+ L+ RDG TLV + +Y+
Sbjct: 63 FLFGATVQPLSVASTHVVCDPTRTRKLLLKQRELDSLFGKANRDGFTLVALSLYWKG-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK +DKR+ K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQHDKRDDIKEREWKVAKDRIMKN 156
>gi|41409268|ref|NP_962104.1| SsrA-binding protein [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|254776424|ref|ZP_05217940.1| SsrA-binding protein [Mycobacterium avium subsp. avium ATCC 25291]
gi|61216569|sp|Q73V46|SSRP_MYCPA RecName: Full=SsrA-binding protein
gi|41398088|gb|AAS05718.1| SmpB [Mycobacterium avium subsp. paratuberculosis K-10]
Length = 169
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
+ + G K +++ NRKAR+NY I+ ++EAG+ L GTEVKSLR + +++D++AT ++
Sbjct: 8 AKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLADAFATIDD 67
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N YIPEY + NH PRRNRKLLL +++I RL +R + L+P+ +YF+
Sbjct: 68 GEVWLRNLYIPEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE- 126
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GKK YDKR+ +RD R+ R L
Sbjct: 127 GKVKVELALARGKKAYDKRQDLAQRDAQREVVRQLGRR 164
>gi|21230921|ref|NP_636838.1| SsrA-binding protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66769078|ref|YP_243840.1| SsrA-binding protein [Xanthomonas campestris pv. campestris str.
8004]
gi|188992202|ref|YP_001904212.1| SsrA-binding protein [Xanthomonas campestris pv. campestris str.
B100]
gi|23822168|sp|Q8PAL7|SSRP_XANCP RecName: Full=SsrA-binding protein
gi|81304958|sp|Q4UT03|SSRP_XANC8 RecName: Full=SsrA-binding protein
gi|229559954|sp|B0RVV0|SSRP_XANCB RecName: Full=SsrA-binding protein
gi|21112535|gb|AAM40762.1| small protein B [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66574410|gb|AAY49820.1| small protein B [Xanthomonas campestris pv. campestris str. 8004]
gi|167733962|emb|CAP52168.1| SsrA-binding protein SmpB [Xanthomonas campestris pv. campestris]
Length = 167
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 1 MSLKS-----RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y
Sbjct: 1 MSKKPAKDKAKSATATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP
Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHVIPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+++ K+++ALA+GK+++DKR+ K+RDW R K R++R HN
Sbjct: 121 LYWSSN-KVKLEIALAKGKQSHDKRDAAKERDWQRDKQRVMRRHN 164
>gi|302391127|ref|YP_003826947.1| SsrA-binding protein [Acetohalobium arabaticum DSM 5501]
gi|302203204|gb|ADL11882.1| SsrA-binding protein [Acetohalobium arabaticum DSM 5501]
Length = 157
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KV++ NRKA++ YHI ++EAGIVL GTEVKS+R + N+ DS+A E++E++L
Sbjct: 2 SEEGIKVIARNRKAKHEYHIEETYEAGIVLQGTEVKSIRQGRANLKDSFAIVEDEEVFLY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+ +I Y Q NR+NH P R RKLLL KR+I L R G TL+P+K+YF +G+ K++
Sbjct: 62 HLHIAPYKQGNRYNHKPERVRKLLLHKRQIRSLIGKTREQGYTLIPLKLYFR-RGIVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA+GK +DKRE K+R R R ++
Sbjct: 121 LALAEGKNVHDKREDIKRRTAQRDIERAFKDK 152
>gi|294102333|ref|YP_003554191.1| SsrA-binding protein [Aminobacterium colombiense DSM 12261]
gi|293617313|gb|ADE57467.1| SsrA-binding protein [Aminobacterium colombiense DSM 12261]
Length = 153
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 72/144 (50%), Positives = 97/144 (67%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NRKAR++Y I+ +FE GIVLTGTE+KS+R KVN+ DS+A N E+WL +I Y
Sbjct: 6 VAVNRKARHDYFILDTFECGIVLTGTEIKSVRAGKVNLKDSFALIRNGEMWLIGVHISPY 65
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ + +NH P R+RKLL+ K EI RL + +R G+TLVP+ IY AKI+LAL +GK
Sbjct: 66 EKGSYYNHEPERDRKLLVHKAEIIRLNSKIREKGLTLVPLSIYIKNGQHAKIELALVKGK 125
Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157
+DKR+T +RD R R LR
Sbjct: 126 AEHDKRDTIAERDAKRSMARALRR 149
>gi|320352775|ref|YP_004194114.1| SsrA-binding protein [Desulfobulbus propionicus DSM 2032]
gi|320121277|gb|ADW16823.1| SsrA-binding protein [Desulfobulbus propionicus DSM 2032]
Length = 151
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 99/147 (67%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K+VS N+KA ++YHI ++FEAG+VL+G EVKSLR KVN+ D YA ++ E++L N +I
Sbjct: 3 QKIVSKNKKAFHDYHIEQTFEAGMVLSGPEVKSLRAGKVNLRDGYAQLKDGEVFLYNVHI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y A N P R RKLLL +REI +L + G+ L+P+KIYF A G AK++L LA
Sbjct: 63 SPYSYATHINQDPLRVRKLLLHRREIRKLIGKLHEKGIALIPLKIYFIANGKAKVELGLA 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157
+GKK YDKR K++ DR R +R
Sbjct: 123 KGKKLYDKRAALKEKQSDRDMERSMRR 149
>gi|187928390|ref|YP_001898877.1| SsrA-binding protein [Ralstonia pickettii 12J]
gi|238691816|sp|B2UBC4|SSRP_RALPJ RecName: Full=SsrA-binding protein
gi|187725280|gb|ACD26445.1| SsrA-binding protein [Ralstonia pickettii 12J]
Length = 148
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I +EAG+ L G EVK++R ++ I + Y N E++L ++I
Sbjct: 2 TIADNKKAFFDYFIEERYEAGMALEGWEVKAIRANRAQIKEGYVVIRNAELFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ + P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+
Sbjct: 62 LQSASTHVHPDPVRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRETEK RDW R+K R++RE
Sbjct: 121 GKKQFDKRETEKDRDWQREKARLMREK 147
>gi|226953427|ref|ZP_03823891.1| ssrA-binding protein (small protein B) [Acinetobacter sp. ATCC
27244]
gi|226835810|gb|EEH68193.1| ssrA-binding protein (small protein B) [Acinetobacter sp. ATCC
27244]
Length = 157
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+N
Sbjct: 1 MNKIVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYVIFKN 60
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S I P + R RKLLLS+RE+ +L AV + G + VP+ Y+
Sbjct: 61 GEAFLFGSQIQPLLSASTHVVPEATRTRKLLLSRRELEKLLGAVNQKGYSCVPLACYWKG 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K+++AL +GK+ +DKR TEK RDW R K R+L
Sbjct: 121 P-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARML 155
>gi|312898327|ref|ZP_07757717.1| SsrA-binding protein [Megasphaera micronuciformis F0359]
gi|310620246|gb|EFQ03816.1| SsrA-binding protein [Megasphaera micronuciformis F0359]
Length = 155
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K ++DNRKAR++Y I ++EAG+ LTGTEVKSLR +VN+ DS+ ++ E ++
Sbjct: 4 TKGMKYITDNRKARHDYFIHDTYEAGLALTGTEVKSLRAGRVNLKDSFCRIDDGEAYIVG 63
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFN P R RKLLL K EI +L A + G TL+P+ +YF KG K+ +
Sbjct: 64 MHISPYEQGNRFNADPLRTRKLLLHKYEIVKLIGATKEKGYTLIPLNLYFK-KGRVKVTV 122
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
ALA GKK YDKR+ +++ R R ++
Sbjct: 123 ALATGKKLYDKRQAIAEKEAKRDIERRMKNK 153
>gi|226305799|ref|YP_002765759.1| SsrA-binding protein [Rhodococcus erythropolis PR4]
gi|229490993|ref|ZP_04384826.1| SsrA-binding protein [Rhodococcus erythropolis SK121]
gi|226184916|dbj|BAH33020.1| SsrA-binding protein [Rhodococcus erythropolis PR4]
gi|229322109|gb|EEN87897.1| SsrA-binding protein [Rhodococcus erythropolis SK121]
Length = 157
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 77/156 (49%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +KV++ NRKAR+NY I+ ++EAGI L GTEVKSLR K ++ D++AT +N E
Sbjct: 1 MKEK---GRKVIATNRKARHNYTIIDTYEAGIALVGTEVKSLREGKASLVDAFATVDNGE 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL + +IPEY Q NH PRR RKLLL KREI L R TLVP+ +YFN G
Sbjct: 58 VWLRSLHIPEYTQGTWNNHSPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFND-GK 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LALA+GK++YDKR+ KR +R+ R L
Sbjct: 117 VKVELALAKGKQDYDKRQDMAKRTAEREVTRELGRR 152
>gi|165924206|ref|ZP_02220038.1| SsrA-binding protein [Coxiella burnetii RSA 334]
gi|165916348|gb|EDR34952.1| SsrA-binding protein [Coxiella burnetii RSA 334]
Length = 159
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 111/159 (69%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F++
Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKS 60
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +++ P+R+RKLLL+KREI +L+ AV++ G+T+VP+ ++++
Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H
Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158
>gi|78043075|ref|YP_359162.1| SsrA-binding protein [Carboxydothermus hydrogenoformans Z-2901]
gi|123577037|sp|Q3AFC2|SSRP_CARHZ RecName: Full=SsrA-binding protein
gi|77995190|gb|ABB14089.1| SsrA-binding protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 149
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K++++NRKA ++YHI+ +EAGI L GTEVKS+R+ +VN+ DS+A EN E+WL N +I
Sbjct: 2 EKIIAENRKAYHDYHILEKYEAGIALKGTEVKSIRLGRVNLRDSFARIENGELWLYNMHI 61
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y Q NRFNH P+R RKLL+ KREI RL+ R G+TLVP+K+YF AKI+L LA
Sbjct: 62 SPYEQGNRFNHEPKRPRKLLMHKREIMRLFGKTREKGLTLVPLKLYFKGN-YAKIELGLA 120
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKRE KRD R+ + LR
Sbjct: 121 KGKKIYDKREEMAKRDAAREIEKALRAR 148
>gi|146308647|ref|YP_001189112.1| SsrA-binding protein [Pseudomonas mendocina ymp]
gi|145576848|gb|ABP86380.1| SsrA-binding protein [Pseudomonas mendocina ymp]
Length = 173
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + P+ ++ N+KA ++Y + + FEAG+ L G EVKSLR K + DSY ++
Sbjct: 14 MAKQKKH--PQGTIALNKKALHDYFVEQKFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 71
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DE WL ++I + P R RKLLL KRE+ +L+ AV++ G T V + +Y+
Sbjct: 72 DEAWLMGAHITPLKTASTHVIADPIRTRKLLLHKRELDKLFGAVQQKGYTCVALSLYWKQ 131
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++ALA+GKK++DKR EK+RD +R+ R +R
Sbjct: 132 H-LVKCEIALAKGKKDFDKRHVEKERDANREVQRAMRSK 169
>gi|315655090|ref|ZP_07907992.1| SsrA-binding protein [Mobiluncus curtisii ATCC 51333]
gi|315490571|gb|EFU80194.1| SsrA-binding protein [Mobiluncus curtisii ATCC 51333]
Length = 204
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KKV++ N+KA ++Y + +EAG+ LTGTEVK+LR+ + ++S+++ + E W
Sbjct: 47 KAESDAKKVIARNKKAAHDYFLEDRYEAGLSLTGTEVKALRMGRASLSEAWVEVDRGEAW 106
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IPEY + NH P+R RKLLL KREI +L AV G T+VP+++YF G AK
Sbjct: 107 LQGANIPEYFYGSWTNHAPKRKRKLLLHKREIIKLEGAVAAKGYTIVPVELYFVG-GRAK 165
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++A+A+GK+ +DKR+T ++R+ DR+ R LRE N
Sbjct: 166 VEIAVAKGKQEWDKRQTIRQREDDREAQRALREAN 200
>gi|296113924|ref|YP_003627862.1| SsrA-binding protein [Moraxella catarrhalis RH4]
gi|295921618|gb|ADG61969.1| SsrA-binding protein [Moraxella catarrhalis RH4]
gi|326559359|gb|EGE09786.1| SsrA-binding protein [Moraxella catarrhalis 7169]
gi|326567199|gb|EGE17319.1| SsrA-binding protein [Moraxella catarrhalis 12P80B1]
gi|326568295|gb|EGE18377.1| SsrA-binding protein [Moraxella catarrhalis BC8]
gi|326569996|gb|EGE20043.1| SsrA-binding protein [Moraxella catarrhalis BC1]
gi|326570077|gb|EGE20123.1| SsrA-binding protein [Moraxella catarrhalis BC7]
gi|326572932|gb|EGE22917.1| SsrA-binding protein [Moraxella catarrhalis CO72]
gi|326573822|gb|EGE23775.1| SsrA-binding protein [Moraxella catarrhalis O35E]
Length = 154
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 7/158 (4%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P + N+KAR+ Y I ++EAG+VL G EVKS+R K++I++SY F+N
Sbjct: 1 MAKK-----PSNQICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYVIFKN 55
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E +L ++I P + N R RKLLL++REI +LY V + G +V + Y+
Sbjct: 56 NEAFLFGAHIQPLLTSSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVVALSCYWK- 114
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K ++ALA+GKK +DKR T K+RD+ R K R +
Sbjct: 115 HGRVKCEIALAKGKKLHDKRATLKERDFARDKQRGFKN 152
>gi|326693238|ref|ZP_08230243.1| SsrA-binding protein [Leuconostoc argentinum KCTC 3773]
Length = 154
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/155 (44%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +K ++ NRKA +NY I +FEAGI LTGTE+KS+R ++ I D + T N +
Sbjct: 1 MAKKQQQTEKYLAQNRKAGFNYAIEDTFEAGIALTGTEIKSVRAGQITIGDGFVTIHNGQ 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
LTN I Y Q N+FN P R R LLL KREI++L A G+T+VP+K+Y G
Sbjct: 61 PLLTNVTIAPYAQGNQFNVDPTRTRPLLLHKREINQLRRAAAEPGVTIVPLKVYLK-HGF 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + + +GKK YDKRE K+RD +R+ R L+
Sbjct: 120 AKVLIGIGRGKKKYDKREDIKRRDQERELGRRLKH 154
>gi|289578142|ref|YP_003476769.1| SsrA-binding protein [Thermoanaerobacter italicus Ab9]
gi|289527855|gb|ADD02207.1| SsrA-binding protein [Thermoanaerobacter italicus Ab9]
Length = 156
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K+++ N+KA ++Y I ++EAGI LTGTE+KS+R+ KVN+ DS+A EN+E++L
Sbjct: 2 TKEEIKIIAQNKKAYHDYFIEETYEAGIALTGTEIKSIRMGKVNLKDSFARVENNEVYLY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GLAK++
Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLAKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+A+GKK YDKRE +RD R+ + +E
Sbjct: 121 LAVAKGKKLYDKREDIARRDAKRELEKHFKEK 152
>gi|229815721|ref|ZP_04446046.1| hypothetical protein COLINT_02770 [Collinsella intestinalis DSM
13280]
gi|229808637|gb|EEP44414.1| hypothetical protein COLINT_02770 [Collinsella intestinalis DSM
13280]
Length = 162
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 66/154 (42%), Positives = 92/154 (59%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ KK+++ NR A + Y I +FE G+ L GTEV+SLR I+DS+A N E WL
Sbjct: 8 KPRREKKLIAKNRSAHHEYFIDETFECGLELAGTEVRSLRERACQITDSFALIRNGECWL 67
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y + FN P R RKLLL +++I L +R G+ LVP+++YFN G K+
Sbjct: 68 HNVHIHPYSNGSIFNRDPDRRRKLLLHRKQIDYLDGKLRMRGVALVPLELYFNEDGRVKL 127
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L L +GKK YDKRE KRD R+ R L++ +
Sbjct: 128 LLGLGRGKKLYDKREDMAKRDMQREIDRALKQRS 161
>gi|308176995|ref|YP_003916401.1| SsrA-binding protein [Arthrobacter arilaitensis Re117]
gi|307744458|emb|CBT75430.1| SsrA-binding protein [Arthrobacter arilaitensis Re117]
Length = 159
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 112/159 (70%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K++ + +V++ NRKAR+++ I+ +FEAG+VLTGTEVKSLR K ++ D + F
Sbjct: 1 MAKKNQED---RVIASNRKARHDFEILDTFEAGMVLTGTEVKSLREGKASLVDGFCQFYR 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE+++ N YIPEYL + NH RR RKLLL ++E+ ++ + G+T+VP+ +YF +
Sbjct: 58 DELYIENVYIPEYLNGSWTNHAARRRRKLLLHRQELIKIERKISEAGLTVVPLSLYFKS- 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+++ +A+GK+ +DKR+T +++ +R+ R +RE N
Sbjct: 117 GRAKVEIGVARGKREFDKRQTLREKQDNREALRAMRERN 155
>gi|257867448|ref|ZP_05647101.1| SsrA-binding protein [Enterococcus casseliflavus EC30]
gi|257873778|ref|ZP_05653431.1| SsrA-binding protein [Enterococcus casseliflavus EC10]
gi|257877528|ref|ZP_05657181.1| SsrA-binding protein [Enterococcus casseliflavus EC20]
gi|325568945|ref|ZP_08145238.1| SsrA-binding protein [Enterococcus casseliflavus ATCC 12755]
gi|257801504|gb|EEV30434.1| SsrA-binding protein [Enterococcus casseliflavus EC30]
gi|257807942|gb|EEV36764.1| SsrA-binding protein [Enterococcus casseliflavus EC10]
gi|257811694|gb|EEV40514.1| SsrA-binding protein [Enterococcus casseliflavus EC20]
gi|325157983|gb|EGC70139.1| SsrA-binding protein [Enterococcus casseliflavus ATCC 12755]
Length = 157
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAGIVL GTE+K++R S++N+ D + N E +L N +I
Sbjct: 12 KLIAQNKKARHDYTILDTIEAGIVLQGTEIKAIRNSRINLKDGFVRIRNGEAFLVNVHIS 71
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL + GMT+VP+K+Y G AK+ + LA+
Sbjct: 72 PYEQGNIFNHDPLRTRKLLLHKKQIARLIGETKNTGMTIVPLKVYIKD-GYAKVLIGLAK 130
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK+ YDKRE+ K++D +RQ R+LR
Sbjct: 131 GKREYDKRESLKRKDQERQIDRVLRNF 157
>gi|296129096|ref|YP_003636346.1| SsrA-binding protein [Cellulomonas flavigena DSM 20109]
gi|296020911|gb|ADG74147.1| SsrA-binding protein [Cellulomonas flavigena DSM 20109]
Length = 158
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +V+ NRKAR++Y I EAG+VLTGTEVK+LR + ++ D +A + E
Sbjct: 1 MAKAKADGRTMVAANRKARHDYLIQDVLEAGLVLTGTEVKALRAGRASLVDGWAEIDGGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL +IPEY Q NH PRR RKLLL + EI RL A R G T+VP+ +YF G
Sbjct: 61 AWLHGVHIPEYSQGTWTNHAPRRKRKLLLHREEIERLDAKTREKGHTIVPLALYFLG-GR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+++ALA GKK++DKR+ ++R + + R +RE
Sbjct: 120 AKVEIALAVGKKDWDKRQALRERQDNLEAQRAIRER 155
>gi|15838939|ref|NP_299627.1| SsrA-binding protein [Xylella fastidiosa 9a5c]
gi|22096181|sp|Q9PAZ7|SSRP_XYLFA RecName: Full=SsrA-binding protein
gi|9107522|gb|AAF85147.1|AE004045_5 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 167
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N++D YA + EI
Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLADGYAYVRDGEI 68
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I +Q + RR RKLLL +R+I L V+R+G TLVP +Y++ K
Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRRQIDTLIGRVQREGFTLVPTAMYWS-KNR 127
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GK+ +DKR EK+R+W R K RI+R HN
Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164
>gi|315226288|ref|ZP_07868076.1| SsrA-binding protein [Parascardovia denticolens DSM 10105]
gi|315120420|gb|EFT83552.1| SsrA-binding protein [Parascardovia denticolens DSM 10105]
Length = 164
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + +V++ NR+AR++Y + EAG+VL GTEVKSLR + ++S ++ T +
Sbjct: 1 MAKKQSDDMQVIALNRRARHDYTLENRVEAGLVLRGTEVKSLREGRASLSQAFVTIDPHH 60
Query: 63 -IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+WL + IPEYL NH P+R RKLLL +I R ++ G T+VP+ +YF G
Sbjct: 61 EMWLEGANIPEYLNGTWTNHAPKRKRKLLLHADQITRFERGIQAKGYTIVPLSLYFKE-G 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GKK YDKR+ ++ R+ R +R HN
Sbjct: 120 RVKVEIALAKGKKEYDKRQALREEQDKREAQRQMRLHN 157
>gi|302871104|ref|YP_003839740.1| SsrA-binding protein [Caldicellulosiruptor obsidiansis OB47]
gi|302573963|gb|ADL41754.1| SsrA-binding protein [Caldicellulosiruptor obsidiansis OB47]
Length = 158
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K++ N KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A E+
Sbjct: 1 MSEKNKQND-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVED 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +
Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYLK-R 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LA+A+GKK YDKRE KRD + + + ++E+
Sbjct: 119 GKIKVELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156
>gi|256375092|ref|YP_003098752.1| SsrA-binding protein [Actinosynnema mirum DSM 43827]
gi|255919395|gb|ACU34906.1| SsrA-binding protein [Actinosynnema mirum DSM 43827]
Length = 161
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 100/148 (67%), Gaps = 1/148 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KV++ NRKAR++Y I+ ++EAG+VL GTEVKSLR+ + ++ D++ ++ E+WL
Sbjct: 3 KERGQKVIASNRKARHDYTILDTYEAGVVLVGTEVKSLRMGRASLVDAFGQVDDGEVWLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY+ NH RR RKLLL ++EI +L + G++L+P+ +YF G K++
Sbjct: 63 ALHIPEYVAGTWTNHEVRRKRKLLLHRQEIEKLIGKTKESGLSLIPLSMYFKD-GYVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRI 154
LALA+GKK+YDKR+ KRD R+ +
Sbjct: 122 LALAKGKKSYDKRQDLAKRDAQREIAKA 149
>gi|222528486|ref|YP_002572368.1| SsrA-binding protein [Caldicellulosiruptor bescii DSM 6725]
gi|254778340|sp|B9MNR6|SSRP_ANATD RecName: Full=SsrA-binding protein
gi|222455333|gb|ACM59595.1| SsrA-binding protein [Caldicellulosiruptor bescii DSM 6725]
Length = 158
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K++ N KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN
Sbjct: 1 MSEKNKQND-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +
Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYIK-R 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LA+A+GKK YDKRE KRD + + + ++E+
Sbjct: 119 GKIKVELAVAKGKKLYDKREAIAKRDAELEIRKKMKEY 156
>gi|322384485|ref|ZP_08058167.1| SsrA-binding-like protein [Paenibacillus larvae subsp. larvae
B-3650]
gi|321150695|gb|EFX44170.1| SsrA-binding-like protein [Paenibacillus larvae subsp. larvae
B-3650]
Length = 162
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KV++ N+KA ++Y I ++E GIVLTGTE+KSLR K NISD+++T N
Sbjct: 4 MAKK----TDGKVLAQNKKASHDYFIEDTYECGIVLTGTEIKSLRQGKANISDAFSTIRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ N +I + Q NRFN P R RKLLL K EI++L ++ G LVP+KIY
Sbjct: 60 GECFVHNMHISPFEQGNRFNPSDPTRARKLLLKKSEINKLLGQSKQQGYALVPLKIYIR- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GKK YDKRET KRD R R LRE
Sbjct: 119 NGYAKLLLGLGRGKKQYDKRETAAKRDAQRDIQRALRER 157
>gi|42784277|ref|NP_981524.1| SsrA-binding protein [Bacillus cereus ATCC 10987]
gi|206976665|ref|ZP_03237570.1| SsrA-binding protein [Bacillus cereus H3081.97]
gi|217962597|ref|YP_002341169.1| SsrA-binding protein [Bacillus cereus AH187]
gi|222098565|ref|YP_002532623.1| ssra-binding protein [Bacillus cereus Q1]
gi|229141850|ref|ZP_04270377.1| hypothetical protein bcere0013_49380 [Bacillus cereus BDRD-ST26]
gi|229199857|ref|ZP_04326449.1| hypothetical protein bcere0001_52990 [Bacillus cereus m1293]
gi|61216565|sp|Q72XZ2|SSRP_BACC1 RecName: Full=SsrA-binding protein
gi|226734247|sp|B7HW45|SSRP_BACC7 RecName: Full=SsrA-binding protein
gi|254778345|sp|B9J4L7|SSRP_BACCQ RecName: Full=SsrA-binding protein
gi|42740208|gb|AAS44132.1| SsrA-binding protein [Bacillus cereus ATCC 10987]
gi|206745151|gb|EDZ56553.1| SsrA-binding protein [Bacillus cereus H3081.97]
gi|217067208|gb|ACJ81458.1| SsrA-binding protein [Bacillus cereus AH187]
gi|221242624|gb|ACM15334.1| SsrA-binding protein [Bacillus cereus Q1]
gi|228583617|gb|EEK41843.1| hypothetical protein bcere0001_52990 [Bacillus cereus m1293]
gi|228641606|gb|EEK97910.1| hypothetical protein bcere0013_49380 [Bacillus cereus BDRD-ST26]
Length = 155
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L A + G LVP+KIY G AK+ L
Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLKIYLK-NGFAKMAL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R R+
Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|313500642|gb|ADR62008.1| SmpB [Pseudomonas putida BIRD-1]
Length = 160
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL+KRE+ R+ AAV + G T V + +Y++
Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPTRTRKLLLNKRELERVEAAVAQKGYTCVALALYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK +DKR+T ++RD +R+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTMRERDSNRELQRAVRNK 156
>gi|260888569|ref|ZP_05899832.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185]
gi|330838138|ref|YP_004412718.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185]
gi|260861766|gb|EEX76266.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185]
gi|329745902|gb|AEB99258.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 78/153 (50%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
R N K+V++NRKAR++Y I +FE G+VL GTEVKSLR +VN+ DS+A+ +N EI++
Sbjct: 3 RKNDGVKIVAENRKARHDYFIHETFETGLVLQGTEVKSLRAGRVNLKDSFASIKNGEIFV 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y Q N FNH P R RKLL+ K EI +L++ R G TLVP+K+YF+ KG AK+
Sbjct: 63 ENMHISPYEQGNIFNHEPLRKRKLLMHKAEIVKLFSKTREKGFTLVPLKLYFS-KGRAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK NYDKR + R R L++H
Sbjct: 122 ELALASGKHNYDKRRDLAAKAAKRDIERALKDH 154
>gi|239828269|ref|YP_002950893.1| SsrA-binding protein [Geobacillus sp. WCH70]
gi|259511423|sp|C5D7L7|SSRP_GEOSW RecName: Full=SsrA-binding protein
gi|239808562|gb|ACS25627.1| SsrA-binding protein [Geobacillus sp. WCH70]
Length = 155
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DS+A E E++L N +I
Sbjct: 7 KLIAQNKKAHHDYFIEETYEAGIVLQGTEIKSIRAGKVNLKDSFAKVEKGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK+ L + +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVLLGVGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+R+ R+ R RE
Sbjct: 126 GKKKYDKREDMKRREAQREIERAFRER 152
>gi|228961346|ref|ZP_04122962.1| hypothetical protein bthur0005_47920 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228798354|gb|EEM45351.1| hypothetical protein bthur0005_47920 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 155
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R R+
Sbjct: 126 GKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|168703817|ref|ZP_02736094.1| SsrA-binding protein [Gemmata obscuriglobus UQM 2246]
Length = 240
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 6/163 (3%)
Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
M+ K + NR+A + Y I E GIVL GTEVKSLR N+ D+Y
Sbjct: 74 MAKSGKKDKKEAADGTVNICRNRRALHEYEISDRLECGIVLVGTEVKSLRDGHANLEDAY 133
Query: 56 ATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115
A + DE+WL + IPEYL NR NH P+R RKLLL +REI + A G+TLVP+++
Sbjct: 134 ARIDGDELWLIGAEIPEYLYGNRLNHKPKRTRKLLLHRREITKFAAKADDKGLTLVPLQM 193
Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
YF G AK+++A+A+GK+ +DKR++ K D R R L
Sbjct: 194 YFRD-GKAKVEIAVAKGKQTHDKRQSMKTADAKRDIDRALASR 235
>gi|89098804|ref|ZP_01171685.1| SsrA-binding protein [Bacillus sp. NRRL B-14911]
gi|89086480|gb|EAR65600.1| SsrA-binding protein [Bacillus sp. NRRL B-14911]
Length = 155
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAGIVL GTE+K++R +V + DSYA + E++L N ++
Sbjct: 7 KVIAQNKKAYHDYFIEDTYEAGIVLQGTEIKAIRAGRVQLKDSYARIISGEVFLINMHVS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +EI +L + G ++VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHNKEISKLIGETKEAGYSIVPLKMYLK-NGFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKNYDKRET KK++ R R RE
Sbjct: 126 GKKNYDKRETLKKKEAGRDIERAFRER 152
>gi|148378237|ref|YP_001252778.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 3502]
gi|153932654|ref|YP_001382638.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|153934929|ref|YP_001386190.1| SsrA-binding protein [Clostridium botulinum A str. Hall]
gi|153939588|ref|YP_001389597.1| SsrA-binding protein [Clostridium botulinum F str. Langeland]
gi|168177567|ref|ZP_02612231.1| SsrA-binding protein [Clostridium botulinum NCTC 2916]
gi|168182156|ref|ZP_02616820.1| SsrA-binding protein [Clostridium botulinum Bf]
gi|170755344|ref|YP_001779865.1| SsrA-binding protein [Clostridium botulinum B1 str. Okra]
gi|170759725|ref|YP_001785565.1| SsrA-binding protein [Clostridium botulinum A3 str. Loch Maree]
gi|187777178|ref|ZP_02993651.1| hypothetical protein CLOSPO_00724 [Clostridium sporogenes ATCC
15579]
gi|226947455|ref|YP_002802546.1| SsrA-binding protein [Clostridium botulinum A2 str. Kyoto]
gi|237793553|ref|YP_002861105.1| SsrA-binding protein [Clostridium botulinum Ba4 str. 657]
gi|166222380|sp|A7FQP4|SSRP_CLOB1 RecName: Full=SsrA-binding protein
gi|166222381|sp|A5HYC7|SSRP_CLOBH RecName: Full=SsrA-binding protein
gi|166222382|sp|A7G9Y7|SSRP_CLOBL RecName: Full=SsrA-binding protein
gi|229559864|sp|B1IDC3|SSRP_CLOBK RecName: Full=SsrA-binding protein
gi|238688509|sp|B1KTK2|SSRP_CLOBM RecName: Full=SsrA-binding protein
gi|254778353|sp|C1FQX0|SSRP_CLOBJ RecName: Full=SsrA-binding protein
gi|259511416|sp|C3KZ53|SSRP_CLOB6 RecName: Full=SsrA-binding protein
gi|148287721|emb|CAL81786.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 3502]
gi|152928698|gb|ABS34198.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 19397]
gi|152930843|gb|ABS36342.1| SsrA-binding protein [Clostridium botulinum A str. Hall]
gi|152935484|gb|ABS40982.1| SsrA-binding protein [Clostridium botulinum F str. Langeland]
gi|169120556|gb|ACA44392.1| SsrA-binding protein [Clostridium botulinum B1 str. Okra]
gi|169406714|gb|ACA55125.1| SsrA-binding protein [Clostridium botulinum A3 str. Loch Maree]
gi|182670967|gb|EDT82941.1| SsrA-binding protein [Clostridium botulinum NCTC 2916]
gi|182674501|gb|EDT86462.1| SsrA-binding protein [Clostridium botulinum Bf]
gi|187774106|gb|EDU37908.1| hypothetical protein CLOSPO_00724 [Clostridium sporogenes ATCC
15579]
gi|226844453|gb|ACO87119.1| SsrA-binding protein [Clostridium botulinum A2 str. Kyoto]
gi|229263935|gb|ACQ54968.1| SsrA-binding protein [Clostridium botulinum Ba4 str. 657]
gi|295317693|gb|ADF98070.1| SsrA-binding protein [Clostridium botulinum F str. 230613]
gi|322804502|emb|CBZ02052.1| tmrna-binding protein SmpB [Clostridium botulinum H04402 065]
Length = 156
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K +++NRKAR++Y I ++EAGI L GTEVKS+R K N+ DSYA N
Sbjct: 1 MSKKK----GSNTLAENRKARHDYFIEETYEAGIELVGTEVKSIRQGKANLKDSYAEIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I Y Q N +N P R+RKLLL K EI++L + G TL+P+ +Y
Sbjct: 57 GEVFVRNMHISPYEQGNIYNKDPLRDRKLLLHKSEIYKLVGFTTQQGYTLIPLSLYLK-H 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ LA+A+GKKNYDKR+ ++ R+ R ++E +
Sbjct: 116 GRVKVSLAVAKGKKNYDKRDAMLEKAAKREMDRQIKERS 154
>gi|28199262|ref|NP_779576.1| SsrA-binding protein [Xylella fastidiosa Temecula1]
gi|182681988|ref|YP_001830148.1| SsrA-binding protein [Xylella fastidiosa M23]
gi|32130086|sp|Q87BS0|SSRP_XYLFT RecName: Full=SsrA-binding protein
gi|238691054|sp|B2I6G4|SSRP_XYLF2 RecName: Full=SsrA-binding protein
gi|28057368|gb|AAO29225.1| small protein B [Xylella fastidiosa Temecula1]
gi|182632098|gb|ACB92874.1| SsrA-binding protein [Xylella fastidiosa M23]
gi|307578253|gb|ADN62222.1| SsrA-binding protein [Xylella fastidiosa subsp. fastidiosa GB514]
Length = 167
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N+ D YA + EI
Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEI 68
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I +Q + RR RKLLL + +I L V+R+G TLVP +Y++ K
Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTAMYWS-KNR 127
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GK+ +DKR EK+R+W R K RI+R HN
Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164
>gi|146296128|ref|YP_001179899.1| SsrA-binding protein [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|187611472|sp|A4XIH3|SSRP_CALS8 RecName: Full=SsrA-binding protein
gi|145409704|gb|ABP66708.1| SsrA-binding protein [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K++ + KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN
Sbjct: 1 MAEKNKQDD-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +
Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKSEINRLAGYVQQKGYTLIPLKIYLK-R 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LA+A+GKK +DKRE KRD + + + ++E+
Sbjct: 119 GKIKVELAVAKGKKLFDKREAIAKRDAELEIRKKMKEY 156
>gi|166367183|ref|YP_001659456.1| SsrA-binding protein [Microcystis aeruginosa NIES-843]
gi|189046832|sp|B0JTG1|SSRP_MICAN RecName: Full=SsrA-binding protein
gi|159030832|emb|CAO88511.1| smpB [Microcystis aeruginosa PCC 7806]
gi|166089556|dbj|BAG04264.1| SsrA-binding protein [Microcystis aeruginosa NIES-843]
Length = 154
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ + K+++DNR+AR+ Y I+ +FEAG+ L GTEVKS+R KVN+ D Y N E
Sbjct: 2 ANQDDKIKIITDNRQARHLYEILETFEAGVQLLGTEVKSVRAGKVNLRDGYVLVRNGEAV 61
Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I Y Q++ FNH PRR RKLL+ K+EI +L V + G+TLVP+K+YF
Sbjct: 62 LINVHISPYEQSSEYFNHDPRRTRKLLMHKKEISKLIGQVEQKGLTLVPLKMYFKGS-WV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI + L +GKK +DKRE K+R R R ++
Sbjct: 121 KISIGLGRGKKLHDKREDLKRRQDQRDMARAMKR 154
>gi|167461763|ref|ZP_02326852.1| SsrA-binding protein [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 159
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 100/159 (62%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K KV++ N+KA ++Y I ++E GIVLTGTE+KSLR K NISD+++T N
Sbjct: 1 MAKK----TDGKVLAQNKKASHDYFIEDTYECGIVLTGTEIKSLRQGKANISDAFSTIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ N +I + Q NRFN P R RKLLL K EI++L ++ G LVP+KIY
Sbjct: 57 GECFVHNMHISPFEQGNRFNPSDPTRARKLLLKKSEINKLLGQSKQQGYALVPLKIYIR- 115
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GKK YDKRET KRD R R LRE
Sbjct: 116 NGYAKLLLGLGRGKKQYDKRETAAKRDAQRDIQRALRER 154
>gi|255524712|ref|ZP_05391664.1| SsrA-binding protein [Clostridium carboxidivorans P7]
gi|296185674|ref|ZP_06854083.1| SsrA-binding protein [Clostridium carboxidivorans P7]
gi|255511606|gb|EET87894.1| SsrA-binding protein [Clostridium carboxidivorans P7]
gi|296049802|gb|EFG89227.1| SsrA-binding protein [Clostridium carboxidivorans P7]
Length = 157
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ N K +++NRKA ++Y I S EAGI L GTEVKS+R + N+ DSYA N
Sbjct: 1 MAKKTSTN---KTLAENRKAWHDYFIEESMEAGIELVGTEVKSIRAGRANLKDSYAEIRN 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI++ N +I Y + N FN P R RKLLL K EI RL + G TLVP+ +Y
Sbjct: 58 GEIFICNVHISPYEKGNIFNRDPLRARKLLLHKSEISRLLGFTTQQGYTLVPLSLYLK-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++A+A+GKK+YDKR+ ++ R R ++E
Sbjct: 117 GRVKVNIAVAKGKKDYDKRDAMLEKAAKRDIDRDMKER 154
>gi|154484691|ref|ZP_02027139.1| hypothetical protein EUBVEN_02408 [Eubacterium ventriosum ATCC
27560]
gi|149734539|gb|EDM50456.1| hypothetical protein EUBVEN_02408 [Eubacterium ventriosum ATCC
27560]
Length = 155
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+V++ N+KAR++Y I ++EAGIVL GTEVKSLR +I +S+ +N E+ +
Sbjct: 3 KGSVRVIASNKKARHDYFIEDTYEAGIVLHGTEVKSLRQGHCSIKESFVRIDNGEVIIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R +KL+L K EI++L + G+TLVP+++YF L K+++
Sbjct: 63 MHINPYEKGNIFNKDPLRPKKLMLHKYEINKLVGKLNEKGLTLVPLQVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GKK YDKR+ KRD R+ R +
Sbjct: 122 GLARGKKLYDKRQDIAKRDMKRENEREFKH 151
>gi|319951467|ref|ZP_08025276.1| SsrA-binding protein [Dietzia cinnamea P4]
gi|319434859|gb|EFV90170.1| SsrA-binding protein [Dietzia cinnamea P4]
Length = 169
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 1 MSLKSRGN------PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDS 54
M+ K++ +V+ NRKAR+++HI+ ++EAGI L GTE+KS+R K ++ D+
Sbjct: 1 MAKKNKKKGASSLGSDGSIVASNRKARHDFHILDTYEAGIALVGTEIKSMREGKASLVDA 60
Query: 55 YATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
+AT ++ E+WL +IPEY + NH P+R RKLLL +REI L VR TLVP+
Sbjct: 61 FATVDDGEVWLRGLHIPEYSHGSWTNHAPKRARKLLLHRREIDSLVGKVRDGNATLVPLS 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+YF G K++LA+A+GK+ +DKR+ +R +R+ R L
Sbjct: 121 LYF-VNGRVKVELAVARGKQAHDKRQDIARRTAEREAVRELGRK 163
>gi|288942137|ref|YP_003444377.1| SsrA-binding protein [Allochromatium vinosum DSM 180]
gi|288897509|gb|ADC63345.1| SsrA-binding protein [Allochromatium vinosum DSM 180]
Length = 159
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + + ++ N+KA ++Y I + E G+VL G EVKSLR +V + +SY
Sbjct: 1 MAKGTKKTSDGSSTIALNKKAGHDYFIEQRLETGLVLEGWEVKSLRAGRVQLKESYVKIL 60
Query: 60 NDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +L ++I + + P R+RKLLL + E++RL R G TL+P +Y+
Sbjct: 61 HAEAFLIGAHISALATASTHISPDPTRSRKLLLKRSELNRLIGLTERAGYTLIPTAMYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+G AK+++ LA+GKK +DKR TE+ RDW R+K RI +
Sbjct: 121 -RGRAKLEIGLAKGKKQHDKRATERDRDWQREKERIFK 157
>gi|126700776|ref|YP_001089673.1| SsrA-binding protein [Clostridium difficile 630]
gi|123066719|sp|Q184Z6|SSRP_CLOD6 RecName: Full=SsrA-binding protein
gi|115252213|emb|CAJ70053.1| SsrA-binding protein [Clostridium difficile]
Length = 163
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KK+++ N++AR+ Y I ++E GI L GTEVKS+R KVN+SD +A+ +N E++L +
Sbjct: 15 GKKILATNKRARHEYFIEETYECGIELKGTEVKSIRQGKVNLSDGFASVDNSEVFLKQVH 74
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q N FN R RKLLL K EI +L A G +L+P+ +Y G K+++AL
Sbjct: 75 ISPYEQGNIFNVDSLRVRKLLLHKHEIRKLIGATTIKGYSLIPLSLYLK-NGKVKVEIAL 133
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRIL 155
A+GKK YDKR+ K+D R+ R +
Sbjct: 134 AKGKKLYDKRQDMAKKDAQRRIEREM 159
>gi|325577659|ref|ZP_08147934.1| SsrA-binding protein [Haemophilus parainfluenzae ATCC 33392]
gi|325160404|gb|EGC72530.1| SsrA-binding protein [Haemophilus parainfluenzae ATCC 33392]
Length = 160
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++AR+ Y I EAG+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKVKVGSNTIALNKRARHEYFIEDEIEAGLELQGWEVKSMRAGKANISDSYIIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+
Sbjct: 63 YLFGATIQPLSLASTHVVCDPTRTRKLLLNKRELDNLFGKSSRDGFTIVALSLYWKGP-W 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI + LA+GKK +DKR+ K+R+W K RI++ N
Sbjct: 122 AKIKIGLAKGKKQHDKRDDIKEREWKVAKERIMKNAN 158
>gi|170016766|ref|YP_001727685.1| SsrA-binding protein [Leuconostoc citreum KM20]
gi|169803623|gb|ACA82241.1| SsrA-binding protein [Leuconostoc citreum KM20]
Length = 155
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K++ V++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T +D
Sbjct: 3 KNKKQDQHNVLAQNRKARFNYAISETFEAGIALTGTEIKSVRAGQITIGDGFVTIHDDNA 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
LTN +I Y NRFN P R R+LLL KREI +L AV G+T+VP+K+Y G A
Sbjct: 63 LLTNVHIAPYTAGNRFNVDPLRTRRLLLHKREIRQLEKAVTEPGVTIVPLKVYLK-HGFA 121
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + + +GKK YDKR+ K+RD +R+ R L+
Sbjct: 122 KLLIGIGRGKKQYDKRDDIKRRDQERELGRRLKH 155
>gi|160933400|ref|ZP_02080788.1| hypothetical protein CLOLEP_02245 [Clostridium leptum DSM 753]
gi|156867277|gb|EDO60649.1| hypothetical protein CLOLEP_02245 [Clostridium leptum DSM 753]
Length = 153
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K ++ N+KA ++Y + SFEAGI L GTEVKS+R +VN+ DS+ + + E+ +
Sbjct: 2 KENLKTIAQNKKAFHDYFLEESFEAGIELCGTEVKSIRQGRVNLKDSWCSIVDGEMLVNG 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N FN P R R+LL+ KREI RL+ V++DG +L+P+ +YF K+ +
Sbjct: 62 MHISPYEQGNIFNKDPMRVRRLLMHKREIMRLFGLVKQDGYSLIPVSLYFKGS-RVKVQV 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L +GKK YDKR R R R ++E N
Sbjct: 121 GLCKGKKLYDKRSDLAARAAKRDIQRAMKERN 152
>gi|26991416|ref|NP_746841.1| SsrA-binding protein [Pseudomonas putida KT2440]
gi|148549801|ref|YP_001269903.1| SsrA-binding protein [Pseudomonas putida F1]
gi|37999615|sp|Q88DT6|SSRP_PSEPK RecName: Full=SsrA-binding protein
gi|166223240|sp|A5W9A9|SSRP_PSEP1 RecName: Full=SsrA-binding protein
gi|24986487|gb|AAN70305.1|AE016671_6 SsrA-binding protein [Pseudomonas putida KT2440]
gi|148513859|gb|ABQ80719.1| SsrA-binding protein [Pseudomonas putida F1]
Length = 160
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL+KRE+ R+ AAV + G T V + +Y++
Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPTRTRKLLLNKRELERVEAAVAQKGYTCVALALYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK +DKR+T ++RD +R+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTMRERDSNRELQRAVRNK 156
>gi|262274821|ref|ZP_06052632.1| tmRNA-binding protein SmpB [Grimontia hollisae CIP 101886]
gi|262221384|gb|EEY72698.1| tmRNA-binding protein SmpB [Grimontia hollisae CIP 101886]
Length = 161
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 3/159 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K+ + ++ NR+AR+ Y I E G+ L G EVKSLR K NIS+SY F
Sbjct: 1 MAKKNAKNKAGSNTIAQNRQARHEYFIEDDIEVGLELQGWEVKSLRAGKANISESYVFFR 60
Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ + I + P R RKLLL +RE+ L V R+G T+V + +Y+
Sbjct: 61 DGEAYMSGATITPLNVASTHVVADPTRVRKLLLKRRELDSLIGKVNREGYTVVALSLYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K AK+ + LA+GKK +DKR+ K RDW R K RI++
Sbjct: 121 -KSWAKLKIGLAKGKKLHDKRDASKDRDWQRDKARIMKN 158
>gi|170692163|ref|ZP_02883326.1| SsrA-binding protein [Burkholderia graminis C4D1M]
gi|170142593|gb|EDT10758.1| SsrA-binding protein [Burkholderia graminis C4D1M]
Length = 148
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y +N E++L ++I
Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNGELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKMHDKRETEKKRDWEREKARLMR 145
>gi|254976743|ref|ZP_05273215.1| SsrA-binding protein [Clostridium difficile QCD-66c26]
gi|255094127|ref|ZP_05323605.1| SsrA-binding protein [Clostridium difficile CIP 107932]
gi|255102298|ref|ZP_05331275.1| SsrA-binding protein [Clostridium difficile QCD-63q42]
gi|255308191|ref|ZP_05352362.1| SsrA-binding protein [Clostridium difficile ATCC 43255]
gi|255315879|ref|ZP_05357462.1| SsrA-binding protein [Clostridium difficile QCD-76w55]
gi|255518539|ref|ZP_05386215.1| SsrA-binding protein [Clostridium difficile QCD-97b34]
gi|255651659|ref|ZP_05398561.1| SsrA-binding protein [Clostridium difficile QCD-37x79]
gi|255657103|ref|ZP_05402512.1| SsrA-binding protein [Clostridium difficile QCD-23m63]
gi|260684694|ref|YP_003215979.1| SsrA-binding protein [Clostridium difficile CD196]
gi|260688352|ref|YP_003219486.1| SsrA-binding protein [Clostridium difficile R20291]
gi|296452063|ref|ZP_06893774.1| SsrA-binding protein [Clostridium difficile NAP08]
gi|296879542|ref|ZP_06903524.1| SsrA-binding protein [Clostridium difficile NAP07]
gi|306521459|ref|ZP_07407806.1| SsrA-binding protein [Clostridium difficile QCD-32g58]
gi|260210857|emb|CBA65970.1| SsrA-binding protein [Clostridium difficile CD196]
gi|260214369|emb|CBE06756.1| SsrA-binding protein [Clostridium difficile R20291]
gi|296259013|gb|EFH05897.1| SsrA-binding protein [Clostridium difficile NAP08]
gi|296429480|gb|EFH15345.1| SsrA-binding protein [Clostridium difficile NAP07]
Length = 151
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KK+++ N++AR+ Y I ++E GI L GTEVKS+R KVN+SD +A+ +N E++L +
Sbjct: 3 GKKILATNKRARHEYFIEETYECGIELKGTEVKSIRQGKVNLSDGFASVDNSEVFLKQVH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q N FN R RKLLL K EI +L A G +L+P+ +Y G K+++AL
Sbjct: 63 ISPYEQGNIFNVDSLRVRKLLLHKHEIRKLIGATTIKGYSLIPLSLYLK-NGKVKVEIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRIL 155
A+GKK YDKR+ K+D R+ R +
Sbjct: 122 AKGKKLYDKRQDMAKKDAQRRIEREM 147
>gi|295395220|ref|ZP_06805428.1| SsrA-binding protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971982|gb|EFG47849.1| SsrA-binding protein [Brevibacterium mcbrellneri ATCC 49030]
Length = 156
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 105/155 (67%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + KK ++ NRKAR++YHI ++EAG+VLTGTEVKSLR + +++D +A
Sbjct: 1 MAK----DTGKKTIAKNRKARHDYHIEDTYEAGLVLTGTEVKSLREGRASLTDGFALIFQ 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N YIPEYLQ + NH RR RKLLL K EI ++ ++ G TL+P+++YF+
Sbjct: 57 GEAWLENVYIPEYLQGSWTNHSARRKRKLLLHKAEILKISHKLKESGRTLIPLELYFDGS 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K+++A+A+GKK++DKR+T +++ R+ R +
Sbjct: 117 -RVKVEIAVARGKKDWDKRQTLREKQDQREAQRAM 150
>gi|326562483|gb|EGE12801.1| SsrA-binding protein [Moraxella catarrhalis 46P47B1]
Length = 154
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 7/158 (4%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P + N+KAR+ Y I ++EAG+VL G EVKS+R K++I++SY F+N
Sbjct: 1 MAKK-----PSNQICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYVIFKN 55
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E +L ++I P + N R RKLLL++REI +LY V + G +V + Y+
Sbjct: 56 NEAFLFGAHIQPLLTSSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVVALSCYWK- 114
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K ++ALA+GKK +DKR T K+RD+ R K R +
Sbjct: 115 HGRVKCEIALAKGKKLHDKRVTLKERDFARDKQRGFKN 152
>gi|169634094|ref|YP_001707830.1| SsrA-binding protein [Acinetobacter baumannii SDF]
gi|169152886|emb|CAP01924.1| ssrA-binding protein (Small protein B) [Acinetobacter baumannii]
Length = 179
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+N
Sbjct: 23 MNKIVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLLGWEVKSLRAGRMSLTESYVIFKN 82
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I P + R RKLLLS+RE+ +L AV + G + VP+ Y+
Sbjct: 83 GEAFLFGAQIQPLLSASTHIVPEATRTRKLLLSRRELEKLMGAVNQKGYSCVPLACYWKG 142
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K+++AL +GK+ +DKR TEK+RDW R K RI
Sbjct: 143 H-LVKLEIALVKGKQLHDKRATEKERDWQRDKARIF 177
>gi|158320014|ref|YP_001512521.1| SsrA-binding protein [Alkaliphilus oremlandii OhILAs]
gi|187611467|sp|A8MFY7|SSRP_ALKOO RecName: Full=SsrA-binding protein
gi|158140213|gb|ABW18525.1| SsrA-binding protein [Alkaliphilus oremlandii OhILAs]
Length = 155
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 6/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K+++ N+KAR++Y I +FE GIVL GTEVKS+R K+NI D YA EN
Sbjct: 1 MASK-----GTKLIATNKKARHDYFIEETFETGIVLVGTEVKSIRQGKLNIKDGYARVEN 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y Q N FN P R RKLLL K EI +L V++ G TL+P+ Y
Sbjct: 56 SEVFLYNVHISPYEQGNIFNKDPLRVRKLLLHKSEIRKLIGYVQQKGYTLIPLSFYLKD- 114
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K++L + GKK YDKR+ K+D R+ + LR+
Sbjct: 115 GLIKVELGIGVGKKIYDKRQDIAKKDAARRIDKELRQR 152
>gi|218246982|ref|YP_002372353.1| SsrA-binding protein [Cyanothece sp. PCC 8801]
gi|257060058|ref|YP_003137946.1| SsrA-binding protein [Cyanothece sp. PCC 8802]
gi|218167460|gb|ACK66197.1| SsrA-binding protein [Cyanothece sp. PCC 8801]
gi|256590224|gb|ACV01111.1| SsrA-binding protein [Cyanothece sp. PCC 8802]
Length = 155
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 2/154 (1%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
P K+VSDNR+AR+ Y I+ ++EAGI L GTEVKS+R KVN+ D Y + E L
Sbjct: 3 NETKPIKIVSDNRQARFLYEILETYEAGIALVGTEVKSVRAGKVNLGDGYVLIRHGEAIL 62
Query: 66 TNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
N +I Y + FNH PRR+RKLLL ++EI++L + + G+T+VP+K+Y L K
Sbjct: 63 LNVHISPYEASGAYFNHDPRRSRKLLLHRKEINKLIGQIEQKGLTVVPLKMYLKGS-LVK 121
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L LA+GKK +DKRET K+R +R+ R ++++
Sbjct: 122 VSLGLARGKKLHDKRETIKRRQDEREMSRAMKQY 155
>gi|154507626|ref|ZP_02043268.1| hypothetical protein ACTODO_00107 [Actinomyces odontolyticus ATCC
17982]
gi|293189304|ref|ZP_06608027.1| SsrA-binding protein [Actinomyces odontolyticus F0309]
gi|153797260|gb|EDN79680.1| hypothetical protein ACTODO_00107 [Actinomyces odontolyticus ATCC
17982]
gi|292821767|gb|EFF80703.1| SsrA-binding protein [Actinomyces odontolyticus F0309]
Length = 175
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KK ++ N+KAR++Y I ++EAG+ L GTEVK+LR+ + ++ D++ E W
Sbjct: 17 KAASDAKKTIARNKKARHDYTIEDTWEAGLALMGTEVKALRMGRASLVDAWVEINGGEAW 76
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IP Y Q + NH P R RKLLL + EI R+ V G T+VP+++YF G K
Sbjct: 77 LYGANIPLYSQGSWTNHAPTRKRKLLLHRAEIDRMQDRVAAKGYTIVPLELYFIG-GRVK 135
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ALA+GK+ +DKR+ +++ R+ R +R +
Sbjct: 136 VEIALAKGKQEWDKRQALREKQDQREAERAMRRY 169
>gi|119945318|ref|YP_942998.1| SsrA-binding protein [Psychromonas ingrahamii 37]
gi|187629778|sp|A1SV84|SSRP_PSYIN RecName: Full=SsrA-binding protein
gi|119863922|gb|ABM03399.1| SsrA-binding protein [Psychromonas ingrahamii 37]
Length = 161
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K S+ ++ N++A ++YH+ FEAG+ L G EVKSLR K NI+DSY +
Sbjct: 1 MAKKNSKTKNNDNTIARNKRASHDYHLEERFEAGLELQGWEVKSLRAGKANIADSYIFLK 60
Query: 60 NDEIWLTNSYIPE-YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E WL + P + ++ P R RKLLL++RE+ L V R G +++P+ +Y+
Sbjct: 61 NGEAWLLGATFPPLLVASSHVVCDPMRYRKLLLNRRELDNLVGKVERQGYSIIPISLYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI ALA+GK+ +DKR K R+W K R+++
Sbjct: 121 -HAWVKISFALAKGKQEHDKRADVKDREWKVDKERMMKH 158
>gi|194289772|ref|YP_002005679.1| ssra-binding protein [Cupriavidus taiwanensis LMG 19424]
gi|238692746|sp|B3R297|SSRP_CUPTR RecName: Full=SsrA-binding protein
gi|193223607|emb|CAQ69614.1| RNA-binding protein, component of the SsrA quality-control system
[Cupriavidus taiwanensis LMG 19424]
Length = 149
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++DN+KA ++Y I +EAGIVL G EVK++R +V I + Y + E++L ++I
Sbjct: 2 TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+
Sbjct: 62 LQSASTHVKPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKRETEK+RDW R+K RI++
Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145
>gi|312794351|ref|YP_004027274.1| ssra-binding protein [Caldicellulosiruptor kristjanssonii 177R1B]
gi|312877084|ref|ZP_07737056.1| SsrA-binding protein [Caldicellulosiruptor lactoaceticus 6A]
gi|311796134|gb|EFR12491.1| SsrA-binding protein [Caldicellulosiruptor lactoaceticus 6A]
gi|312181491|gb|ADQ41661.1| SsrA-binding protein [Caldicellulosiruptor kristjanssonii 177R1B]
Length = 158
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN E++L
Sbjct: 5 KKQDDIKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVENGEVFL 64
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +G K+
Sbjct: 65 FNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYLK-RGKIKV 123
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LA+A+GKK YDKRE KRD + + + ++E+
Sbjct: 124 ELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156
>gi|302867828|ref|YP_003836465.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029]
gi|315505768|ref|YP_004084655.1| ssra-binding protein [Micromonospora sp. L5]
gi|302570687|gb|ADL46889.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029]
gi|315412387|gb|ADU10504.1| SsrA-binding protein [Micromonospora sp. L5]
Length = 163
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K+++ N+KAR++Y I++++EAGIVL GTEVKSLR +V++ D++A + EI L +
Sbjct: 6 GRKLIASNKKARHDYDILKTYEAGIVLAGTEVKSLREGRVSLVDAFAQERDGEIMLYGLH 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY NH PRR RKLLL + EI R+ +R G+TLVP+ +YF A G AK++L L
Sbjct: 66 IAEYGFGTWTNHAPRRTRKLLLHRVEIARILEKLRDGGITLVPLSMYF-ADGWAKVELGL 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+G+++YDKR+ +RD R+ R +
Sbjct: 125 ARGRRSYDKRQALAERDAKREIAREMGRR 153
>gi|229020333|ref|ZP_04177099.1| hypothetical protein bcere0030_48230 [Bacillus cereus AH1273]
gi|229026564|ref|ZP_04182913.1| hypothetical protein bcere0029_48370 [Bacillus cereus AH1272]
gi|228734741|gb|EEL85386.1| hypothetical protein bcere0029_48370 [Bacillus cereus AH1272]
gi|228740969|gb|EEL91201.1| hypothetical protein bcere0030_48230 [Bacillus cereus AH1273]
Length = 155
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L A + G +LVP++IY G AK+ L
Sbjct: 63 MHINTYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYSLVPLRIYLK-NGFAKMAL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R+ R+
Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARVFRDR 152
>gi|329936504|ref|ZP_08286240.1| tmRNA-binding protein SmpB [Streptomyces griseoaurantiacus M045]
gi|329304019|gb|EGG47901.1| tmRNA-binding protein SmpB [Streptomyces griseoaurantiacus M045]
Length = 190
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+++V+ N+KAR++Y I+ FEAG+VL+GTEVKSLR + ++ D + + +E WL N++I
Sbjct: 35 RRIVAQNKKARHDYAIIDVFEAGLVLSGTEVKSLRQGRASLVDGFVQIDGNEAWLHNAHI 94
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PEY Q NH RR RKLLL + EI RL + + G T+VP+ +YF G AK ++ALA
Sbjct: 95 PEYSQGTWTNHSVRRKRKLLLHREEIDRLASKSQETGHTIVPLALYFKD-GRAKAEIALA 153
Query: 131 QGKKNYDKRETEKKRDWDRQKHRIL 155
+GKK YDKR+T ++R R+ R++
Sbjct: 154 RGKKEYDKRQTLRERQDRRESDRVI 178
>gi|307546756|ref|YP_003899235.1| SsrA-binding protein [Halomonas elongata DSM 2581]
gi|307218780|emb|CBV44050.1| SsrA-binding protein [Halomonas elongata DSM 2581]
Length = 163
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 70/150 (46%), Positives = 93/150 (62%), Gaps = 2/150 (1%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
++ N+KAR+ YHI +FEAG+ L G EVKSLR K ++D+Y +N E WL S+I
Sbjct: 13 SNAIALNKKARFEYHIDETFEAGLALAGWEVKSLRAGKAQLTDTYILVKNGEAWLLGSHI 72
Query: 71 PEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ P R RKLLL ++EI R+++ + G T VP+K+Y+ K +LAL
Sbjct: 73 TPLNTVSTHEVADPTRTRKLLLHRKEIARIFSRTQDKGHTCVPLKLYWKGS-KVKCELAL 131
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK +DKR TEK RDW RQK RILREHN
Sbjct: 132 VTGKKLHDKRATEKDRDWQRQKGRILREHN 161
>gi|226314808|ref|YP_002774704.1| SsrA-binding protein [Brevibacillus brevis NBRC 100599]
gi|226097758|dbj|BAH46200.1| SsrA-binding protein [Brevibacillus brevis NBRC 100599]
Length = 157
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ K ++ NRKAR++YHI + +EAGI LTGTE+KS+R S+V + DS+A +N E+
Sbjct: 2 SKDKAGTKTIAQNRKARHDYHIEQVYEAGIELTGTEIKSVRASRVQLKDSFARVQNGELL 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y Q NRFNH P R RKLL+ + EI +L +R G +LVP+ IY G AK
Sbjct: 62 LYNVHISPYEQGNRFNHEPERTRKLLMRRLEILKLNGLIRERGYSLVPLSIYLKG-GWAK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++LAL +GKKNYDKRE KK++ R R LRE
Sbjct: 121 VELALVKGKKNYDKREDLKKKESTRDIERALRER 154
>gi|312134372|ref|YP_004001710.1| ssra-binding protein [Caldicellulosiruptor owensensis OL]
gi|311774423|gb|ADQ03910.1| SsrA-binding protein [Caldicellulosiruptor owensensis OL]
Length = 158
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A E+ E++
Sbjct: 4 AKKQDDIKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEDGEVF 63
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +G K
Sbjct: 64 LYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYLK-RGKIK 122
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++LA+A+GKK YDKRE KRD + + + ++E+
Sbjct: 123 VELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156
>gi|297583431|ref|YP_003699211.1| SsrA-binding protein [Bacillus selenitireducens MLS10]
gi|297141888|gb|ADH98645.1| SsrA-binding protein [Bacillus selenitireducens MLS10]
Length = 155
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K ++ N+KA ++YHI ++EAG+VLTGTE+KS+R +VN+ DS+A N E+WL+N +I
Sbjct: 5 DKPIAQNKKANHDYHIEETYEAGMVLTGTEIKSIRNRRVNLKDSFARISNGEVWLSNMHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y Q NR+NH P R RKLLL K++I +L + G TLVP+KIY G+AK+ + L
Sbjct: 65 SPYEQGNRYNHDPVRARKLLLHKKQIDQLIGLTKEKGYTLVPLKIYIK-NGVAKVLIGLG 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKRE K++D R+ R ++H
Sbjct: 124 KGKKKYDKREDLKRKDAKREVERAFKDH 151
>gi|295676805|ref|YP_003605329.1| SsrA-binding protein [Burkholderia sp. CCGE1002]
gi|295436648|gb|ADG15818.1| SsrA-binding protein [Burkholderia sp. CCGE1002]
Length = 148
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y N E++L ++I
Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNGELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIHPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKMHDKRETEKKRDWEREKARLMR 145
>gi|331268764|ref|YP_004395256.1| SsrA-binding protein [Clostridium botulinum BKT015925]
gi|329125314|gb|AEB75259.1| SsrA-binding protein [Clostridium botulinum BKT015925]
Length = 156
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + N ++ NRKA + Y I +FEAGI L GTEVKS+R K N+ DSYA+ +N
Sbjct: 1 MAKDKKNN----TLAQNRKAYHEYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIKN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I Y Q N FN P R RKLLL K +I+ L + G TL+P+ +Y K
Sbjct: 57 GEVFVCNMHISPYEQGNIFNKDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLK-K 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKKNYDKR+ + R R ++E
Sbjct: 116 GRVKVALGVAKGKKNYDKRDAIAAKSAKRDIDRQMKER 153
>gi|209518728|ref|ZP_03267544.1| SsrA-binding protein [Burkholderia sp. H160]
gi|209500842|gb|EEA00882.1| SsrA-binding protein [Burkholderia sp. H160]
Length = 148
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y N E++L ++I
Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNGELFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIHPDPVRTRKLLLHGEEISKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKMHDKRETEKKRDWEREKARLMR 145
>gi|167563164|ref|ZP_02356080.1| SsrA-binding protein [Burkholderia oklahomensis EO147]
gi|167570347|ref|ZP_02363221.1| SsrA-binding protein [Burkholderia oklahomensis C6786]
Length = 148
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|330721851|gb|EGG99818.1| tmRNA-binding protein SmpB [gamma proteobacterium IMCC2047]
Length = 160
Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P + N+KAR++YHI +FEAG+VL+G EVKSLR K I++SY ++
Sbjct: 4 MAKKKKTSPGS--ICQNKKARHDYHINETFEAGLVLSGWEVKSLRAGKGQITESYIMLKD 61
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++I N P R RKLLL K EI +L+ A +++G T V + +Y+
Sbjct: 62 GEAWLFGAHIEPLKTACNHVIADPLRTRKLLLHKGEISKLFKATQQEGRTCVALALYWKG 121
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K ++A+A GKK +D R EK RDW+R K R++R +
Sbjct: 122 PH-VKCEVAIATGKKQHDYRAAEKDRDWNRDKQRVMRHN 159
>gi|296118848|ref|ZP_06837424.1| SsrA-binding protein [Corynebacterium ammoniagenes DSM 20306]
gi|295968337|gb|EFG81586.1| SsrA-binding protein [Corynebacterium ammoniagenes DSM 20306]
Length = 169
Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats.
Identities = 73/152 (48%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G + ++ NR+AR++Y I+ FE GIVL GTE+KSLR K++++D++AT +N E++L
Sbjct: 13 GADGTQTLATNRRARHDYKILEEFECGIVLLGTEIKSLREGKISLTDAFATVDNGEVFLR 72
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +IPEY + NH P+R RKLLL +REI R+ VR TL+P+K+Y G AK++
Sbjct: 73 NLHIPEYSMGSWTNHSPKRTRKLLLHRREIDRIMGQVRDGNKTLIPLKVYLR-NGYAKLE 131
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L LAQGK++YDKRE K+RD DR+ R L
Sbjct: 132 LGLAQGKQDYDKREDIKRRDQDREITRELGRR 163
>gi|285018461|ref|YP_003376172.1| ssra-binding protein small protein b (smpb) [Xanthomonas
albilineans GPE PC73]
gi|283473679|emb|CBA16182.1| probable ssra-binding protein small protein b (smpb) [Xanthomonas
albilineans]
Length = 167
Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats.
Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGN-----PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G EVKS+R + NI +SY
Sbjct: 1 MSKKPGKDKANGPTANKTIALNKRARHEYHLEDRYEAGLALQGWEVKSIRAGRANIGESY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A E++L + I +Q + RR RKLLL + EI +L V RDG TLVP
Sbjct: 61 AFVRQGELFLFGAQITPLIQASTHVVADDRRTRKLLLHRNEIDKLIGRVERDGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y++ K K+++ALA+GK+++DKR K RDW R K RI+R HN
Sbjct: 121 MYWS-KNKIKLEIALAKGKQDHDKRNAAKDRDWARDKQRIMRRHN 164
>gi|255327043|ref|ZP_05368119.1| SsrA-binding protein [Rothia mucilaginosa ATCC 25296]
gi|255296260|gb|EET75601.1| SsrA-binding protein [Rothia mucilaginosa ATCC 25296]
Length = 164
Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P +++ N+KAR+NY+IV ++EAGIVL GTEVKSLR +I D + ++E+WL
Sbjct: 13 PNNAIIAQNKKARHNYNIVDTYEAGIVLLGTEVKSLRDGGASIVDGFCQVTDNELWLEGI 72
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY NH RR RKLLL + EI++L ++ G T+VP+K+YF+ G AK+++A
Sbjct: 73 HIAEYGYGTWTNHAARRRRKLLLHRSEINKLAQKLKETGYTVVPLKLYFS-NGRAKVEIA 131
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA GK+ YDKR+ ++R D + R +R N
Sbjct: 132 LATGKREYDKRQALRERQDDLEARRAMRYRN 162
>gi|300718006|ref|YP_003742809.1| SsrA-binding protein (small protein B) [Erwinia billingiae Eb661]
gi|299063842|emb|CAX60962.1| SsrA-binding protein (small protein B) [Erwinia billingiae Eb661]
Length = 160
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +
Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYIMLRD 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ P R RKLLL +RE+ L+ RDG T+V + +Y+
Sbjct: 61 GEAFLFGATFQALIGASSHVVCDPTRTRKLLLKERELAILFDKANRDGYTIVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+ + +A+GKK +DKR K R+W K RI++ N
Sbjct: 120 NAWAKLKIGVAKGKKEHDKRGDIKDREWKTDKARIMKHAN 159
>gi|170719884|ref|YP_001747572.1| SsrA-binding protein [Pseudomonas putida W619]
gi|229559892|sp|B1J247|SSRP_PSEPW RecName: Full=SsrA-binding protein
gi|169757887|gb|ACA71203.1| SsrA-binding protein [Pseudomonas putida W619]
Length = 160
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R+RKLLL+KRE+ R+ AAV + G T V + +Y++
Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPIRSRKLLLNKRELERVEAAVAQKGYTCVALALYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK +DKR+T ++RD +R+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTVRERDSNRELQRAVRNK 156
>gi|113460618|ref|YP_718684.1| SsrA-binding protein [Haemophilus somnus 129PT]
gi|170718943|ref|YP_001784110.1| SsrA-binding protein [Haemophilus somnus 2336]
gi|123031204|sp|Q0I279|SSRP_HAES1 RecName: Full=SsrA-binding protein
gi|189046830|sp|B0USL1|SSRP_HAES2 RecName: Full=SsrA-binding protein
gi|112822661|gb|ABI24750.1| SsrA-binding protein [Haemophilus somnus 129PT]
gi|168827072|gb|ACA32443.1| SsrA-binding protein [Haemophilus somnus 2336]
Length = 160
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++AR++Y I EAG+ L G EVKS+R K +I DSY F++ E
Sbjct: 3 KKKAKVASNTIALNKRARHDYFIEDEIEAGLSLQGWEVKSMRAGKASIGDSYIIFKHGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+++E+ L+ RDG T+V + +Y+
Sbjct: 63 YLFGATIQPLSVASTHIVCDPTRTRKLLLNQKELASLFGKANRDGFTIVALSLYWKGP-W 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK +DKRE K R+W K RI++
Sbjct: 122 AKVKIGLAKGKKLHDKREDIKDREWKVTKDRIMKN 156
>gi|297544417|ref|YP_003676719.1| SsrA-binding protein [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
gi|296842192|gb|ADH60708.1| SsrA-binding protein [Thermoanaerobacter mathranii subsp. mathranii
str. A3]
Length = 156
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 103/152 (67%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K++ N+KA ++Y I ++EAGI LTGTE+KS+R+ KVN+ DS+A EN+E++L
Sbjct: 2 TKEEIKIIVQNKKAYHDYFIEETYEAGIALTGTEIKSIRMGKVNLKDSFARVENNEVYLY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GLAK++
Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLAKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+A+GKK YDKRE +RD R+ + +E
Sbjct: 121 LAVAKGKKLYDKREDIARRDAKRELEKHFKEK 152
>gi|238026923|ref|YP_002911154.1| SsrA-binding protein [Burkholderia glumae BGR1]
gi|237876117|gb|ACR28450.1| SsrA-binding protein [Burkholderia glumae BGR1]
Length = 151
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVIVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|312623214|ref|YP_004024827.1| ssra-binding protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312203681|gb|ADQ47008.1| SsrA-binding protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 158
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K++ + KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN
Sbjct: 1 MSEKNKKDD-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +
Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYIK-R 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LA+A+GKK YDKRE KRD + + + ++E+
Sbjct: 119 GKIKVELAVAKGKKLYDKREAIAKRDAELEIRKKMKEY 156
>gi|153207445|ref|ZP_01946145.1| SsrA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|212218718|ref|YP_002305505.1| SsrA-binding protein [Coxiella burnetii CbuK_Q154]
gi|226706520|sp|B6J7W1|SSRP_COXB1 RecName: Full=SsrA-binding protein
gi|120576576|gb|EAX33200.1| SsrA-binding protein [Coxiella burnetii 'MSU Goat Q177']
gi|212012980|gb|ACJ20360.1| SsrA-binding protein [Coxiella burnetii CbuK_Q154]
Length = 159
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F++
Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKS 60
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +++ P+ +RKLLL+KREI +L+ AV++ G+T+VP+ ++++
Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQSSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H
Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158
>gi|86605902|ref|YP_474665.1| SsrA-binding protein [Synechococcus sp. JA-3-3Ab]
gi|123506715|sp|Q2JV45|SSRP_SYNJA RecName: Full=SsrA-binding protein
gi|86554444|gb|ABC99402.1| SsrA-binding protein [Synechococcus sp. JA-3-3Ab]
Length = 154
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 99/152 (65%), Gaps = 2/152 (1%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+P K + +NR+AR+ Y I+ ++EAGI LTGTEVKS+R K N+ D++A F + E WL N
Sbjct: 4 DPNVKTLVENRRARFEYEILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHN 63
Query: 68 SYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
++ + + FNH P R RKLLL +REI RL V + G+T+VP+++ N +G K
Sbjct: 64 LHVAPHGTASKVFNHDPTRRRKLLLHRREIDRLRGLVEQKGLTVVPLRLVLN-RGWIKAH 122
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +A+GKK +DKR+ K+R+ R+ R L+
Sbjct: 123 LGVARGKKLHDKRQAIKERETRREIQRELKGR 154
>gi|219847594|ref|YP_002462027.1| SsrA-binding protein [Chloroflexus aggregans DSM 9485]
gi|254778351|sp|B8G4V8|SSRP_CHLAD RecName: Full=SsrA-binding protein
gi|219541853|gb|ACL23591.1| SsrA-binding protein [Chloroflexus aggregans DSM 9485]
Length = 158
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 107/159 (67%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ VV++NRKAR++Y I + EAGIVL+G+E+KS+R +VN+ S+A +
Sbjct: 1 MATKTNH---IAVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVID 57
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DE++L +++I Y Q+ FNH P R RKLLL +REI+RL VR GMTLVP+KIY
Sbjct: 58 DEVFLYDAHIAPYEQSGKYFNHDPLRPRKLLLHRREINRLNGLVRMKGMTLVPLKIYLKG 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ AK++L +A+GKK YDKRE +RD +R R L+
Sbjct: 118 R-RAKVELGIARGKKIYDKREDIARRDAERDIERALKRR 155
>gi|238897904|ref|YP_002923583.1| trans-translation protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
gi|259511424|sp|C4K4E2|SSRP_HAMD5 RecName: Full=SsrA-binding protein
gi|229465661|gb|ACQ67435.1| trans-translation protein [Candidatus Hamiltonella defensa 5AT
(Acyrthosiphon pisum)]
Length = 160
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K P ++ N++AR+ Y I FEAG+VL G EVK+LR KVNISDSY +
Sbjct: 1 MIKKKTYKPGSATIAQNKRARHEYFIEEEFEAGVVLQGWEVKALRAGKVNISDSYVLLKK 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + R RKLLL +REI L+ + R+G T+V + +Y+
Sbjct: 61 GEAFLLGATITPLNVASTHTVCESMRTRKLLLKQREIDSLFGRINREGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+KI +A+A+GKK +DKR++ K RDW K RI++ N
Sbjct: 120 NAWSKIKIAVAKGKKTHDKRDSIKDRDWKINKDRIMKNAN 159
>gi|297581237|ref|ZP_06943161.1| SsrA-binding protein [Vibrio cholerae RC385]
gi|297534553|gb|EFH73390.1| SsrA-binding protein [Vibrio cholerae RC385]
Length = 161
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY +
Sbjct: 1 MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL + +Y++
Sbjct: 61 DGEAFISGMTIIPLQQASTHVVTNPTRIRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +A+GKK +DKRE K+++W RQK R+++
Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157
>gi|29654605|ref|NP_820297.1| SsrA-binding protein [Coxiella burnetii RSA 493]
gi|39932367|sp|Q83C29|SSRP_COXBU RecName: Full=SsrA-binding protein
gi|29541873|gb|AAO90811.1| SsrA-binding protein [Coxiella burnetii RSA 493]
Length = 159
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 109/159 (68%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F+
Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKG 60
Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +++ P+R+RKLLL+KREI +L+ AV++ G+T+VP+ ++++
Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ LA+GKK +DKRET K+R+W+R+KHR+L+ H
Sbjct: 121 NH-VKVEIVLAKGKKTHDKRETIKRREWEREKHRVLKSH 158
>gi|167035725|ref|YP_001670956.1| SsrA-binding protein [Pseudomonas putida GB-1]
gi|189046838|sp|B0KIT1|SSRP_PSEPG RecName: Full=SsrA-binding protein
gi|166862213|gb|ABZ00621.1| SsrA-binding protein [Pseudomonas putida GB-1]
Length = 160
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL+KRE+ RL AAV + G T V + +Y++
Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPIRTRKLLLNKRELERLEAAVAQKGYTCVALALYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK +DKR+T ++RD +R+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTMRERDSNRELQRAVRNK 156
>gi|84515848|ref|ZP_01003209.1| SsrA-binding protein [Loktanella vestfoldensis SKA53]
gi|84510290|gb|EAQ06746.1| SsrA-binding protein [Loktanella vestfoldensis SKA53]
Length = 157
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K+ KVV++NR+ARY++ I E GI+LTG+EVKSLRV + NI+DSYA+ ++
Sbjct: 1 MSKKT-EKTNYKVVAENRRARYDFAIEDDIEVGIILTGSEVKSLRVGQSNIADSYASVDD 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WLTN+YI Y F+H RR RKLL+S++E+ RL+ A +R+GMTLVP+ +YFN +
Sbjct: 60 GELWLTNAYIAPYE-RAMFSHEERRKRKLLVSRKELSRLWNATKREGMTLVPLVLYFNDR 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
GL K+ +A A+GKKN+DKR TE RDW RQK R+LR+
Sbjct: 119 GLVKLKIATAKGKKNHDKRATEAARDWGRQKQRLLRQ 155
>gi|304415297|ref|ZP_07395987.1| trans-translation protein [Candidatus Regiella insecticola LSR1]
gi|304282852|gb|EFL91325.1| trans-translation protein [Candidatus Regiella insecticola LSR1]
Length = 175
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K ++ NR+AR++Y I FEAG+VL G EVKSLR KVNISDSY +N
Sbjct: 15 MIKKKINKSGSASIAQNRRARHDYFIEEEFEAGLVLQGWEVKSLRAGKVNISDSYVVLKN 74
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E L + I + P R RKLLL+KR+I L+ + R+G T+V + +Y+
Sbjct: 75 GEAHLFGATITPLTVASTHVICEPMRTRKLLLNKRQIDSLFGRINREGYTVVALSMYWK- 133
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+KI + +A+GKK++DKR + K ++W K RI++ N
Sbjct: 134 NAWSKIKIGVAKGKKDHDKRASLKDKEWRVDKARIMKSAN 173
>gi|186476076|ref|YP_001857546.1| SsrA-binding protein [Burkholderia phymatum STM815]
gi|184192535|gb|ACC70500.1| SsrA-binding protein [Burkholderia phymatum STM815]
Length = 148
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y + +EAG+VL G EVK+LR + I + Y +N E++L ++I
Sbjct: 3 IIDNRKAFFDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNAELYLIGTHISPL 62
Query: 74 LQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+A++F N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASKFANLDPVRTRKLLLHAEEISKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K R++R
Sbjct: 122 KKLHDKRETEKKRDWEREKARLMR 145
>gi|283457762|ref|YP_003362351.1| tmRNA-binding protein [Rothia mucilaginosa DY-18]
gi|283133766|dbj|BAI64531.1| tmRNA-binding protein [Rothia mucilaginosa DY-18]
Length = 165
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P +++ N+KAR+NY+IV ++EAGIVL GTEVKSLR +I D + ++E+WL
Sbjct: 14 PNNAIIAQNKKARHNYNIVDTYEAGIVLLGTEVKSLRDGGASIVDGFCQVTDNEMWLEGI 73
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY NH RR RKLLL + EI++L ++ G T+VP+K+YF+ G K+++A
Sbjct: 74 HIAEYGYGTWTNHAARRRRKLLLHRSEINKLAQKLKETGYTVVPLKMYFS-NGRVKVEIA 132
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA GK+ YDKR+ ++R D + R +R N
Sbjct: 133 LATGKREYDKRQALRERQDDLEARRAMRYRN 163
>gi|260914395|ref|ZP_05920864.1| SsrA-binding protein [Pasteurella dagmatis ATCC 43325]
gi|260631496|gb|EEX49678.1| SsrA-binding protein [Pasteurella dagmatis ATCC 43325]
Length = 160
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F++ E
Sbjct: 3 KKKAKVSSNTIALNKRARHDYFIEEEIEAGLSLQGWEVKSMRAGKANISDSYIIFKDGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+++E+ L+ RDG T+V + +Y+
Sbjct: 63 YLFGATIQPLSVASTHIVCDPTRTRKLLLNQKELASLFGKANRDGYTIVALSLYWK-NAW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK +DKRE K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQHDKREDIKEREWKVTKDRIMKN 156
>gi|23465746|ref|NP_696349.1| SsrA-binding protein [Bifidobacterium longum NCC2705]
gi|23326431|gb|AAN24985.1| SsrA-binding protein [Bifidobacterium longum NCC2705]
Length = 199
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65
+K++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL
Sbjct: 44 KETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWL 103
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K
Sbjct: 104 EGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 162
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 163 EIALARGKKEFDKRQALREEQDKREALRAMRYAN 196
>gi|325663557|ref|ZP_08151967.1| SsrA-binding protein [Lachnospiraceae bacterium 4_1_37FAA]
gi|325470456|gb|EGC73687.1| SsrA-binding protein [Lachnospiraceae bacterium 4_1_37FAA]
Length = 155
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K ++ +S+ EN E+++
Sbjct: 3 KTSTKLIANNKKAYHDYFILDTYEAGIALHGTEVKSLRMGKCSVKESFIRVENGEVFIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K EI+++ + GM +VP+K+YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRPRKLLLHKAEINKMLGKTKEKGMAIVPLKVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR K+D R+ R + N
Sbjct: 122 GLARGKKLYDKRNDIAKKDQQREAQRDFKIRN 153
>gi|326203827|ref|ZP_08193689.1| SsrA-binding protein [Clostridium papyrosolvens DSM 2782]
gi|325985925|gb|EGD46759.1| SsrA-binding protein [Clostridium papyrosolvens DSM 2782]
Length = 154
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+V+ N+KAR++Y I + EAGIVL+GTEVKS+R K+N+ +SYA + E+ ++
Sbjct: 3 KEAVKIVAQNKKARHDYFIEETIEAGIVLSGTEVKSVRQGKLNLKESYAAIVDGEVIVSG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N FN P R+RKLLL K EI+RL ++ G TLVP++ Y +G+ KI+L
Sbjct: 63 MHISPYEQGNIFNKDPLRDRKLLLHKSEINRLIGLTQQKGFTLVPVQAYLK-RGMVKIEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+GKK YDKR+ RD R+ R ++E
Sbjct: 122 GVARGKKLYDKRDDIAARDAKREIDRKMKE 151
>gi|30023165|ref|NP_834796.1| SsrA-binding protein [Bacillus cereus ATCC 14579]
gi|206970299|ref|ZP_03231252.1| SsrA-binding protein [Bacillus cereus AH1134]
gi|218235552|ref|YP_002369899.1| SsrA-binding protein [Bacillus cereus B4264]
gi|228923837|ref|ZP_04087115.1| hypothetical protein bthur0011_48120 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|229049780|ref|ZP_04194337.1| hypothetical protein bcere0027_47380 [Bacillus cereus AH676]
gi|229082334|ref|ZP_04214797.1| hypothetical protein bcere0023_49510 [Bacillus cereus Rock4-2]
gi|229112535|ref|ZP_04242072.1| hypothetical protein bcere0018_47750 [Bacillus cereus Rock1-15]
gi|229130372|ref|ZP_04259330.1| hypothetical protein bcere0015_48070 [Bacillus cereus BDRD-Cer4]
gi|229147653|ref|ZP_04275997.1| hypothetical protein bcere0012_47790 [Bacillus cereus BDRD-ST24]
gi|229153278|ref|ZP_04281456.1| hypothetical protein bcere0011_48080 [Bacillus cereus m1550]
gi|229181382|ref|ZP_04308711.1| hypothetical protein bcere0005_47240 [Bacillus cereus 172560W]
gi|229193369|ref|ZP_04320319.1| hypothetical protein bcere0002_50150 [Bacillus cereus ATCC 10876]
gi|296505528|ref|YP_003667228.1| SsrA-binding protein [Bacillus thuringiensis BMB171]
gi|33301595|sp|Q815L5|SSRP_BACCR RecName: Full=SsrA-binding protein
gi|226734246|sp|B7HEC5|SSRP_BACC4 RecName: Full=SsrA-binding protein
gi|29898725|gb|AAP11997.1| SsrA-binding protein [Bacillus cereus ATCC 14579]
gi|206734876|gb|EDZ52045.1| SsrA-binding protein [Bacillus cereus AH1134]
gi|218163509|gb|ACK63501.1| SsrA-binding protein [Bacillus cereus B4264]
gi|228590170|gb|EEK48039.1| hypothetical protein bcere0002_50150 [Bacillus cereus ATCC 10876]
gi|228602118|gb|EEK59610.1| hypothetical protein bcere0005_47240 [Bacillus cereus 172560W]
gi|228629882|gb|EEK86533.1| hypothetical protein bcere0011_48080 [Bacillus cereus m1550]
gi|228635862|gb|EEK92348.1| hypothetical protein bcere0012_47790 [Bacillus cereus BDRD-ST24]
gi|228653071|gb|EEL08951.1| hypothetical protein bcere0015_48070 [Bacillus cereus BDRD-Cer4]
gi|228670915|gb|EEL26222.1| hypothetical protein bcere0018_47750 [Bacillus cereus Rock1-15]
gi|228700766|gb|EEL53289.1| hypothetical protein bcere0023_49510 [Bacillus cereus Rock4-2]
gi|228722693|gb|EEL74081.1| hypothetical protein bcere0027_47380 [Bacillus cereus AH676]
gi|228835966|gb|EEM81329.1| hypothetical protein bthur0011_48120 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|296326580|gb|ADH09508.1| SsrA-binding protein [Bacillus thuringiensis BMB171]
Length = 155
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R R+
Sbjct: 126 GKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|167037765|ref|YP_001665343.1| SsrA-binding protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116180|ref|YP_004186339.1| SsrA-binding protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|254778387|sp|B0KA44|SSRP_THEP3 RecName: Full=SsrA-binding protein
gi|166856599|gb|ABY95007.1| SsrA-binding protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929271|gb|ADV79956.1| SsrA-binding protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 156
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+++ N+KA ++Y I ++EAGIVL+GTEVKS+R+ KVN+ DS+A EN+E++L N
Sbjct: 3 KEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GL K++L
Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLVKVEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+A+GKK YDKRE +RD + + +E
Sbjct: 122 AVARGKKLYDKREDIARRDAKSELEKHFKEK 152
>gi|258517023|ref|YP_003193245.1| SsrA-binding protein [Desulfotomaculum acetoxidans DSM 771]
gi|257780728|gb|ACV64622.1| SsrA-binding protein [Desulfotomaculum acetoxidans DSM 771]
Length = 152
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 74/147 (50%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K + N+KAR+ YHI ++E GIVLTGTEVKSLRV + N+ DSYA EN E+ L N +I
Sbjct: 4 KNICQNKKARHEYHIEDTYETGIVLTGTEVKSLRVGRGNLLDSYARVENGEMMLYNMHIS 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P+R RKLL+ K EI RL+ VR G +L+P + YF G K++L LA+
Sbjct: 64 PYEQGNRYNHEPKRTRKLLMHKSEIMRLFGRVREKGYSLIPTRAYFRD-GKVKVELGLAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKR+ RD R+ R R+
Sbjct: 123 GKKTFDKRQDLAARDARREVDRAFRDR 149
>gi|172041180|ref|YP_001800894.1| SsrA-binding protein [Corynebacterium urealyticum DSM 7109]
gi|238064646|sp|B1VI76|SSRP_CORU7 RecName: Full=SsrA-binding protein
gi|171852484|emb|CAQ05460.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 178
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 5/161 (3%)
Query: 2 SLKSRGNPPK----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
S + + P+ V++ NRKAR++YHI+ ++E G+VL GTEVK+LR K ++ D+YAT
Sbjct: 13 SKGKKASAPRGGGPAVIATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYAT 72
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E+WL +IPEY + N +NH PRR RKLLL +REI L VR TLVP+++YF
Sbjct: 73 IDAGEVWLRGLHIPEYSRGNFWNHTPRRVRKLLLHRREIDSLTGKVRDGNHTLVPLQLYF 132
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K +LALA+GK++YDKR+ K+R +R+ R L
Sbjct: 133 VD-GRLKCELALARGKQDYDKRQDIKRRTEEREVVRELGRK 172
>gi|47567333|ref|ZP_00238046.1| SsrA-binding protein [Bacillus cereus G9241]
gi|228988351|ref|ZP_04148443.1| hypothetical protein bthur0001_50060 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|47555954|gb|EAL14292.1| SsrA-binding protein [Bacillus cereus G9241]
gi|228771332|gb|EEM19806.1| hypothetical protein bthur0001_50060 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 155
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L
Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLTGASKETGYALVPVRIYLK-NGFAKMAL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R R+
Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|319442605|ref|ZP_07991761.1| SsrA-binding protein [Corynebacterium variabile DSM 44702]
Length = 184
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
R VV+ NRKAR+N+ I+ ++EAG+ L GTEVKSLR K ++ D++AT ++ EIWL
Sbjct: 27 RKGGGPLVVATNRKARHNFKILETYEAGLALVGTEVKSLREGKASLVDAFATVDDGEIWL 86
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+IPEY NH PRR RKLL+ + EI + VR TLVP++IYF+ G AK+
Sbjct: 87 RGLHIPEYTHGTWTNHAPRRTRKLLMHRGEIDSVMGKVRDGKNTLVPLRIYFSG-GRAKV 145
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LALA GK++YDKR+ K+R +R+ R L
Sbjct: 146 ELALATGKQDYDKRQDIKRRTEEREVTRELGRR 178
>gi|284048324|ref|YP_003398663.1| SsrA-binding protein [Acidaminococcus fermentans DSM 20731]
gi|283952545|gb|ADB47348.1| SsrA-binding protein [Acidaminococcus fermentans DSM 20731]
Length = 154
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 76/152 (50%), Positives = 100/152 (65%), Gaps = 2/152 (1%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY-ATFENDEIWLTN 67
P K +++NRKAR++Y+I ++E GIVLTGTEVKSLR K N+ DSY A ++ E++L N
Sbjct: 3 KPVKAIAENRKARHDYNIHETYETGIVLTGTEVKSLRQGKANLKDSYAAVTKSGEVYLYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y NRFN P R+RKLL+ KREI +L R G TLVP+++YF+ GL K L
Sbjct: 63 LHISPYEHGNRFNVDPLRDRKLLMHKREIQKLIGKTREKGFTLVPLQLYFS-HGLVKCKL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
ALA GKK YDKR+ R R R ++E N
Sbjct: 122 ALATGKKLYDKRQAMADRAAKRDMDRAMKERN 153
>gi|114321060|ref|YP_742743.1| SsrA-binding protein [Alkalilimnicola ehrlichii MLHE-1]
gi|122311349|sp|Q0A7D4|SSRP_ALHEH RecName: Full=SsrA-binding protein
gi|114227454|gb|ABI57253.1| SsrA-binding protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 160
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
++ + P+ V++ NRKAR+ +HI + EAG+ L G EVKSLR +VN+ ++Y
Sbjct: 3 AVSKKKKTPENVIALNRKARFEFHIEETMEAGLALEGWEVKSLRAGRVNLQEAYVLIRRG 62
Query: 62 EIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL P + P R R+LLL K+EI RL A R+G T+VP+ +++ +
Sbjct: 63 EAWLIGCTITPLPTASTHIKPDPTRTRRLLLHKKEIARLTGAADREGYTVVPLDLHWK-R 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + LA+GKK +DKR +K++DW RQK R+++
Sbjct: 122 GKAKLSIGLAKGKKKHDKRADQKEQDWQRQKQRLMKHK 159
>gi|71276141|ref|ZP_00652421.1| SmpB protein [Xylella fastidiosa Dixon]
gi|71900378|ref|ZP_00682512.1| SmpB protein [Xylella fastidiosa Ann-1]
gi|170730632|ref|YP_001776065.1| SsrA-binding protein [Xylella fastidiosa M12]
gi|238687928|sp|B0U3K6|SSRP_XYLFM RecName: Full=SsrA-binding protein
gi|71163059|gb|EAO12781.1| SmpB protein [Xylella fastidiosa Dixon]
gi|71729881|gb|EAO31978.1| SmpB protein [Xylella fastidiosa Ann-1]
gi|167965425|gb|ACA12435.1| small protein B [Xylella fastidiosa M12]
Length = 167
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N+ D YA + EI
Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEI 68
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I +Q + RR RKLLL +R+I L V+R+G TLVP +Y++ K
Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRRQIDTLIGRVQREGFTLVPTAMYWS-KNR 127
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GK+ +DKR EK+R+W R K RI+R HN
Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164
>gi|15640864|ref|NP_230495.1| SsrA-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121585744|ref|ZP_01675539.1| small protein B [Vibrio cholerae 2740-80]
gi|121726043|ref|ZP_01679342.1| small protein B [Vibrio cholerae V52]
gi|147675473|ref|YP_001216329.1| SsrA-binding protein [Vibrio cholerae O395]
gi|153802067|ref|ZP_01956653.1| small protein B [Vibrio cholerae MZO-3]
gi|153818058|ref|ZP_01970725.1| small protein B [Vibrio cholerae NCTC 8457]
gi|153822030|ref|ZP_01974697.1| small protein B [Vibrio cholerae B33]
gi|153824635|ref|ZP_01977302.1| small protein B [Vibrio cholerae MZO-2]
gi|153828277|ref|ZP_01980944.1| small protein B [Vibrio cholerae 623-39]
gi|227081024|ref|YP_002809575.1| small protein B [Vibrio cholerae M66-2]
gi|229505542|ref|ZP_04395052.1| tmRNA-binding protein SmpB [Vibrio cholerae BX 330286]
gi|229510787|ref|ZP_04400266.1| tmRNA-binding protein SmpB [Vibrio cholerae B33]
gi|229513048|ref|ZP_04402514.1| tmRNA-binding protein SmpB [Vibrio cholerae TMA 21]
gi|229517908|ref|ZP_04407352.1| tmRNA-binding protein SmpB [Vibrio cholerae RC9]
gi|229523347|ref|ZP_04412754.1| tmRNA-binding protein SmpB [Vibrio cholerae TM 11079-80]
gi|229525471|ref|ZP_04414876.1| tmRNA-binding protein SmpB [Vibrio cholerae bv. albensis VL426]
gi|229530044|ref|ZP_04419434.1| tmRNA-binding protein SmpB [Vibrio cholerae 12129(1)]
gi|229608562|ref|YP_002879210.1| SsrA-binding protein [Vibrio cholerae MJ-1236]
gi|254285526|ref|ZP_04960490.1| small protein B [Vibrio cholerae AM-19226]
gi|254847985|ref|ZP_05237335.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744648|ref|ZP_05418599.1| tmRNA-binding protein SmpB [Vibrio cholera CIRS 101]
gi|258625223|ref|ZP_05720136.1| SsrA-binding protein [Vibrio mimicus VM603]
gi|261212094|ref|ZP_05926380.1| tmRNA-binding protein SmpB [Vibrio sp. RC341]
gi|262161221|ref|ZP_06030332.1| tmRNA-binding protein SmpB [Vibrio cholerae INDRE 91/1]
gi|262165110|ref|ZP_06032847.1| tmRNA-binding protein SmpB [Vibrio mimicus VM223]
gi|262168725|ref|ZP_06036420.1| tmRNA-binding protein SmpB [Vibrio cholerae RC27]
gi|262191965|ref|ZP_06050131.1| tmRNA-binding protein SmpB [Vibrio cholerae CT 5369-93]
gi|262402800|ref|ZP_06079361.1| tmRNA-binding protein SmpB [Vibrio sp. RC586]
gi|298499023|ref|ZP_07008830.1| SsrA-binding protein [Vibrio cholerae MAK 757]
gi|12644304|sp|P52116|SSRP_VIBCH RecName: Full=SsrA-binding protein
gi|172047450|sp|A5F375|SSRP_VIBC3 RecName: Full=SsrA-binding protein
gi|254778389|sp|C3LT98|SSRP_VIBCM RecName: Full=SsrA-binding protein
gi|9655300|gb|AAF94010.1| small protein B [Vibrio cholerae O1 biovar El Tor str. N16961]
gi|121550107|gb|EAX60123.1| small protein B [Vibrio cholerae 2740-80]
gi|121631525|gb|EAX63895.1| small protein B [Vibrio cholerae V52]
gi|124122426|gb|EAY41169.1| small protein B [Vibrio cholerae MZO-3]
gi|126511404|gb|EAZ73998.1| small protein B [Vibrio cholerae NCTC 8457]
gi|126520424|gb|EAZ77647.1| small protein B [Vibrio cholerae B33]
gi|146317356|gb|ABQ21895.1| small protein B [Vibrio cholerae O395]
gi|148876231|gb|EDL74366.1| small protein B [Vibrio cholerae 623-39]
gi|149741853|gb|EDM55882.1| small protein B [Vibrio cholerae MZO-2]
gi|150424388|gb|EDN16325.1| small protein B [Vibrio cholerae AM-19226]
gi|227008912|gb|ACP05124.1| small protein B [Vibrio cholerae M66-2]
gi|227012668|gb|ACP08878.1| small protein B [Vibrio cholerae O395]
gi|229333818|gb|EEN99304.1| tmRNA-binding protein SmpB [Vibrio cholerae 12129(1)]
gi|229339052|gb|EEO04069.1| tmRNA-binding protein SmpB [Vibrio cholerae bv. albensis VL426]
gi|229339710|gb|EEO04725.1| tmRNA-binding protein SmpB [Vibrio cholerae TM 11079-80]
gi|229344623|gb|EEO09597.1| tmRNA-binding protein SmpB [Vibrio cholerae RC9]
gi|229349941|gb|EEO14895.1| tmRNA-binding protein SmpB [Vibrio cholerae TMA 21]
gi|229350752|gb|EEO15693.1| tmRNA-binding protein SmpB [Vibrio cholerae B33]
gi|229357765|gb|EEO22682.1| tmRNA-binding protein SmpB [Vibrio cholerae BX 330286]
gi|229371217|gb|ACQ61640.1| tmRNA-binding protein SmpB [Vibrio cholerae MJ-1236]
gi|254843690|gb|EET22104.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737679|gb|EET93073.1| tmRNA-binding protein SmpB [Vibrio cholera CIRS 101]
gi|258582513|gb|EEW07349.1| SsrA-binding protein [Vibrio mimicus VM603]
gi|260838702|gb|EEX65353.1| tmRNA-binding protein SmpB [Vibrio sp. RC341]
gi|262022843|gb|EEY41549.1| tmRNA-binding protein SmpB [Vibrio cholerae RC27]
gi|262024826|gb|EEY43494.1| tmRNA-binding protein SmpB [Vibrio mimicus VM223]
gi|262028971|gb|EEY47624.1| tmRNA-binding protein SmpB [Vibrio cholerae INDRE 91/1]
gi|262032140|gb|EEY50712.1| tmRNA-binding protein SmpB [Vibrio cholerae CT 5369-93]
gi|262351582|gb|EEZ00715.1| tmRNA-binding protein SmpB [Vibrio sp. RC586]
gi|297543356|gb|EFH79406.1| SsrA-binding protein [Vibrio cholerae MAK 757]
gi|327483594|gb|AEA78001.1| tmRNA-binding protein SmpB [Vibrio cholerae LMA3894-4]
Length = 161
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY +
Sbjct: 1 MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL + +Y++
Sbjct: 61 DGEAFISGMTIIPLQQASTHVVANPTRIRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +A+GKK +DKRE K+++W RQK R+++
Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157
>gi|145634157|ref|ZP_01789868.1| SsrA-binding protein [Haemophilus influenzae PittAA]
gi|148828156|ref|YP_001292909.1| SsrA-binding protein [Haemophilus influenzae PittGG]
gi|229843960|ref|ZP_04464101.1| SsrA-binding protein [Haemophilus influenzae 6P18H1]
gi|166223222|sp|A5UIC0|SSRP_HAEIG RecName: Full=SsrA-binding protein
gi|145268601|gb|EDK08594.1| SsrA-binding protein [Haemophilus influenzae PittAA]
gi|148719398|gb|ABR00526.1| SsrA-binding protein [Haemophilus influenzae PittGG]
gi|229812954|gb|EEP48642.1| SsrA-binding protein [Haemophilus influenzae 6P18H1]
Length = 161
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSIRAGKANISDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ +
Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKS-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKR+ K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156
>gi|83720114|ref|YP_442573.1| SsrA-binding protein [Burkholderia thailandensis E264]
gi|167581501|ref|ZP_02374375.1| SsrA-binding protein [Burkholderia thailandensis TXDOH]
gi|167619612|ref|ZP_02388243.1| SsrA-binding protein [Burkholderia thailandensis Bt4]
gi|167837017|ref|ZP_02463900.1| SsrA-binding protein [Burkholderia thailandensis MSMB43]
gi|257138782|ref|ZP_05587044.1| SsrA-binding protein [Burkholderia thailandensis E264]
gi|123536954|sp|Q2SWX6|SSRP_BURTA RecName: Full=SsrA-binding protein
gi|83653939|gb|ABC38002.1| SsrA-binding protein [Burkholderia thailandensis E264]
Length = 148
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|326564265|gb|EGE14495.1| SsrA-binding protein [Moraxella catarrhalis 103P14B1]
gi|326574758|gb|EGE24694.1| SsrA-binding protein [Moraxella catarrhalis 101P30B1]
Length = 154
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 7/158 (4%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P + N+KAR+ Y I ++EAG+VL G EVKS+R K++I++SY F+N
Sbjct: 1 MAKK-----PSNQICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYGIFKN 55
Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E +L ++I P + N R RKLLL++REI +LY V + G +V + Y+
Sbjct: 56 NEAFLFGAHIQPLLTSSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVVALSCYWK- 114
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K ++ALA+GKK +DKR T K+RD+ R K R +
Sbjct: 115 HGRVKCEIALAKGKKLHDKRATLKERDFARDKQRGFKN 152
>gi|21242264|ref|NP_641846.1| SsrA-binding protein [Xanthomonas axonopodis pv. citri str. 306]
gi|23822170|sp|Q8PMB9|SSRP_XANAC RecName: Full=SsrA-binding protein
gi|21107690|gb|AAM36382.1| small protein B [Xanthomonas axonopodis pv. citri str. 306]
Length = 167
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y
Sbjct: 1 MSKKQTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR+RKLLL + EI ++ + V R+G TLVP
Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLSRVEREGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN
Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164
>gi|312796271|ref|YP_004029193.1| SsrA-binding protein [Burkholderia rhizoxinica HKI 454]
gi|312168046|emb|CBW75049.1| SsrA-binding protein [Burkholderia rhizoxinica HKI 454]
Length = 149
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DN+KA ++Y I +EAG+VL G EVK+LR + I + Y N E++L ++I
Sbjct: 3 IIDNKKAFFDYFIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNGELFLIGTHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL+ EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 QTASTHVHADPVRTRKLLLNADEIRKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLARG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRETEKKRDW R+K ++L+
Sbjct: 122 KKLHDKRETEKKRDWQREKAQLLKN 146
>gi|71898358|ref|ZP_00680531.1| SmpB protein [Xylella fastidiosa Ann-1]
gi|71731881|gb|EAO33939.1| SmpB protein [Xylella fastidiosa Ann-1]
Length = 167
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N+ D YA + EI
Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEI 68
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I +Q + RR RKLLL +R+I L V+R+G TLVP IY++ K
Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRRQIDTLIGRVQREGFTLVPTAIYWS-KNR 127
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GK+ +DKR EK+R+W R K RI+R HN
Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164
>gi|254797147|ref|YP_003081985.1| SsrA-binding protein [Neorickettsia risticii str. Illinois]
gi|254590383|gb|ACT69745.1| SsrA-binding protein [Neorickettsia risticii str. Illinois]
Length = 147
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/141 (48%), Positives = 101/141 (71%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y +V FEAGIVL GTEVK+L+ ++++++ F E+WL N ++P
Sbjct: 2 KVIATNKKARFDYSLVDEFEAGIVLLGTEVKALKYHSASLNEAFVAFRRFELWLNNMHVP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A+R NH P R+RKLL+ KR+++++ AVR G+TLVP+ IY N GL K+ ALA+
Sbjct: 62 PYKPASRSNHVPTRSRKLLVHKRQLNKISGAVRTKGLTLVPLSIYVNENGLIKVKFALAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKH 152
GKK YDKR+ K RDW R++
Sbjct: 122 GKKKYDKRQDIKDRDWARKQA 142
>gi|330817419|ref|YP_004361124.1| SsrA-binding protein [Burkholderia gladioli BSR3]
gi|327369812|gb|AEA61168.1| SsrA-binding protein [Burkholderia gladioli BSR3]
Length = 150
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVIVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRETEKKRDW+R+K RI+R+
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMRD 146
>gi|253682580|ref|ZP_04863377.1| SsrA-binding protein [Clostridium botulinum D str. 1873]
gi|253562292|gb|EES91744.1| SsrA-binding protein [Clostridium botulinum D str. 1873]
Length = 156
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + N ++ NRKA + Y I +FEAGI L GTEVKS+R K N+ DSYA+ +N
Sbjct: 1 MAKDKKNN----TLAQNRKAHHEYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIKN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I Y Q N FN P R RKLLL K +I+ L + G TL+P+ +Y K
Sbjct: 57 GEVFVCNMHISPYEQGNIFNKDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLK-K 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKKNYDKR+ + R R ++E
Sbjct: 116 GRVKVALGVAKGKKNYDKRDAIAAKSAKRDIDRQMKER 153
>gi|312128404|ref|YP_003993278.1| ssra-binding protein [Caldicellulosiruptor hydrothermalis 108]
gi|311778423|gb|ADQ07909.1| SsrA-binding protein [Caldicellulosiruptor hydrothermalis 108]
Length = 158
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN E++
Sbjct: 4 AKKQDDIKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVENGEVF 63
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +G K
Sbjct: 64 LYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYIK-RGKIK 122
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++LA+A+GKK YDKRE KRD + + + ++E+
Sbjct: 123 VELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156
>gi|331087074|ref|ZP_08336148.1| SsrA-binding protein [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330409354|gb|EGG88801.1| SsrA-binding protein [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 155
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K ++ +S+ EN E+++
Sbjct: 3 KTSTKLIANNKKAYHDYFILDTYEAGIALHGTEVKSLRMGKCSVKESFIRVENGEVFIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K EI+++ + GM +VP+K+YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRPRKLLLHKAEINKMIGKTKEKGMAIVPLKVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR K+D R+ R + N
Sbjct: 122 GLARGKKLYDKRNDIAKKDQQREAQRDFKIRN 153
>gi|325914028|ref|ZP_08176384.1| SsrA-binding protein [Xanthomonas vesicatoria ATCC 35937]
gi|325539797|gb|EGD11437.1| SsrA-binding protein [Xanthomonas vesicatoria ATCC 35937]
Length = 167
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D Y
Sbjct: 1 MSKKPSKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP
Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN
Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164
>gi|257870207|ref|ZP_05649860.1| SsrA-binding protein [Enterococcus gallinarum EG2]
gi|257804371|gb|EEV33193.1| SsrA-binding protein [Enterococcus gallinarum EG2]
Length = 152
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++ N+KAR++Y I+ + EAGIVL GTE+KS+R S++N+ D + N E +L N +I
Sbjct: 7 RLIAQNKKARHDYTILDTIEAGIVLQGTEIKSIRNSRINLKDGFVRIRNGEAYLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL + GMT+VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIARLIGESKNTGMTIVPLKVYIKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK+ YDKRET K++D +RQ R LR
Sbjct: 126 GKREYDKRETLKRKDQERQIDRALRNF 152
>gi|228903600|ref|ZP_04067721.1| hypothetical protein bthur0014_47580 [Bacillus thuringiensis IBL
4222]
gi|228942261|ref|ZP_04104800.1| hypothetical protein bthur0008_48910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228981829|ref|ZP_04142124.1| hypothetical protein bthur0002_49880 [Bacillus thuringiensis Bt407]
gi|228777941|gb|EEM26213.1| hypothetical protein bthur0002_49880 [Bacillus thuringiensis Bt407]
gi|228817305|gb|EEM63391.1| hypothetical protein bthur0008_48910 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228856029|gb|EEN00568.1| hypothetical protein bthur0014_47580 [Bacillus thuringiensis IBL
4222]
gi|326942916|gb|AEA18812.1| SsrA-binding protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 155
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R+ R+
Sbjct: 126 GKKQYDKRHDLKEKEAKREIARVFRDR 152
>gi|260588165|ref|ZP_05854078.1| SsrA-binding protein [Blautia hansenii DSM 20583]
gi|260541692|gb|EEX22261.1| SsrA-binding protein [Blautia hansenii DSM 20583]
Length = 156
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS +++++N+KA ++Y I ++EAGI L GTEVKSLR+ K +I +S+ +
Sbjct: 1 MAKKSEN----RLIANNKKAYHDYFIEDTYEAGIALAGTEVKSLRMGKCSIKESFIQIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLLL EI ++ +R G TLVP+K+YF
Sbjct: 57 GEVFIFGMHISPYEKGNIFNKDPLRVRKLLLHSYEIRKIEGKIREKGYTLVPLKVYFKGS 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ +A+GKK YDKR+ K+D R+ R + N
Sbjct: 117 -LVKVEIGVAKGKKLYDKRQDIAKKDQRRETEREFKVKN 154
>gi|77359790|ref|YP_339365.1| SsrA-binding protein [Pseudoalteromonas haloplanktis TAC125]
gi|123587286|sp|Q3IE36|SSRP_PSEHT RecName: Full=SsrA-binding protein
gi|76874701|emb|CAI85922.1| SsrA-binding protein (small protein B) [Pseudoalteromonas
haloplanktis TAC125]
Length = 159
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNI+++Y +N
Sbjct: 1 MAKNKSSKSTSNTIALNKKARHEYFLHDKFEAGVELQGWEVKSIRAGKVNITETYIHLKN 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLLS+RE+ RL A RDG +L+ +Y+
Sbjct: 61 GEAFLLGAQIQPLNSASTHVICDPLRYRKLLLSRRELDRLVGATERDGYSLIATAMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++ LA+GKK +DKRE K +DW R+K R+++
Sbjct: 120 NCWVKLEFHLAKGKKLHDKREDGKDKDWSREKERLMKHK 158
>gi|30265131|ref|NP_847508.1| SsrA-binding protein [Bacillus anthracis str. Ames]
gi|47530641|ref|YP_021990.1| SsrA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49187942|ref|YP_031195.1| SsrA-binding protein [Bacillus anthracis str. Sterne]
gi|49481124|ref|YP_039115.1| SsrA-binding protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52140442|ref|YP_086388.1| SsrA-binding protein [Bacillus cereus E33L]
gi|65317077|ref|ZP_00390036.1| COG0691: tmRNA-binding protein [Bacillus anthracis str. A2012]
gi|118480166|ref|YP_897317.1| SsrA-binding protein [Bacillus thuringiensis str. Al Hakam]
gi|165869898|ref|ZP_02214555.1| SsrA-binding protein [Bacillus anthracis str. A0488]
gi|167641766|ref|ZP_02400008.1| SsrA-binding protein [Bacillus anthracis str. A0193]
gi|170689381|ref|ZP_02880574.1| SsrA-binding protein [Bacillus anthracis str. A0465]
gi|196032955|ref|ZP_03100368.1| SsrA-binding protein [Bacillus cereus W]
gi|196039566|ref|ZP_03106871.1| SsrA-binding protein [Bacillus cereus NVH0597-99]
gi|196045605|ref|ZP_03112835.1| SsrA-binding protein [Bacillus cereus 03BB108]
gi|218906300|ref|YP_002454134.1| SsrA-binding protein [Bacillus cereus AH820]
gi|225867073|ref|YP_002752451.1| SsrA-binding protein [Bacillus cereus 03BB102]
gi|227817863|ref|YP_002817872.1| SsrA-binding protein [Bacillus anthracis str. CDC 684]
gi|228917730|ref|ZP_04081271.1| hypothetical protein bthur0012_49340 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228930127|ref|ZP_04093137.1| hypothetical protein bthur0010_48090 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228936412|ref|ZP_04099210.1| hypothetical protein bthur0009_48490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228948830|ref|ZP_04111105.1| hypothetical protein bthur0007_49530 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229094214|ref|ZP_04225293.1| hypothetical protein bcere0021_49240 [Bacillus cereus Rock3-42]
gi|229124629|ref|ZP_04253814.1| hypothetical protein bcere0016_49130 [Bacillus cereus 95/8201]
gi|229158692|ref|ZP_04286750.1| hypothetical protein bcere0010_48650 [Bacillus cereus ATCC 4342]
gi|229600689|ref|YP_002869324.1| SsrA-binding protein [Bacillus anthracis str. A0248]
gi|254686467|ref|ZP_05150326.1| SsrA-binding protein [Bacillus anthracis str. CNEVA-9066]
gi|254724466|ref|ZP_05186250.1| SsrA-binding protein [Bacillus anthracis str. A1055]
gi|254735674|ref|ZP_05193381.1| SsrA-binding protein [Bacillus anthracis str. Western North America
USA6153]
gi|254744240|ref|ZP_05201920.1| SsrA-binding protein [Bacillus anthracis str. Kruger B]
gi|254756992|ref|ZP_05209020.1| SsrA-binding protein [Bacillus anthracis str. Australia 94]
gi|301056587|ref|YP_003794798.1| SsrA-binding protein [Bacillus anthracis CI]
gi|33301606|sp|Q81XA8|SSRP_BACAN RecName: Full=SsrA-binding protein
gi|61216462|sp|Q631M9|SSRP_BACCZ RecName: Full=SsrA-binding protein
gi|61216512|sp|Q6HBG1|SSRP_BACHK RecName: Full=SsrA-binding protein
gi|166222359|sp|A0RKR7|SSRP_BACAH RecName: Full=SsrA-binding protein
gi|226734244|sp|B7JFF5|SSRP_BACC0 RecName: Full=SsrA-binding protein
gi|254778342|sp|C3P072|SSRP_BACAA RecName: Full=SsrA-binding protein
gi|254778343|sp|C3LDE9|SSRP_BACAC RecName: Full=SsrA-binding protein
gi|254778344|sp|C1EZ92|SSRP_BACC3 RecName: Full=SsrA-binding protein
gi|30259808|gb|AAP28994.1| SsrA-binding protein [Bacillus anthracis str. Ames]
gi|47505789|gb|AAT34465.1| SsrA-binding protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49181869|gb|AAT57245.1| SsrA-binding protein [Bacillus anthracis str. Sterne]
gi|49332680|gb|AAT63326.1| ssrA-binding protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51973911|gb|AAU15461.1| ssrA-binding protein [Bacillus cereus E33L]
gi|118419391|gb|ABK87810.1| SsrA-binding protein [Bacillus thuringiensis str. Al Hakam]
gi|164714221|gb|EDR19741.1| SsrA-binding protein [Bacillus anthracis str. A0488]
gi|167510249|gb|EDR85653.1| SsrA-binding protein [Bacillus anthracis str. A0193]
gi|170666677|gb|EDT17447.1| SsrA-binding protein [Bacillus anthracis str. A0465]
gi|195994384|gb|EDX58339.1| SsrA-binding protein [Bacillus cereus W]
gi|196023436|gb|EDX62113.1| SsrA-binding protein [Bacillus cereus 03BB108]
gi|196029726|gb|EDX68328.1| SsrA-binding protein [Bacillus cereus NVH0597-99]
gi|218538420|gb|ACK90818.1| SsrA-binding protein [Bacillus cereus AH820]
gi|225788634|gb|ACO28851.1| SsrA-binding protein [Bacillus cereus 03BB102]
gi|227006068|gb|ACP15811.1| SsrA-binding protein [Bacillus anthracis str. CDC 684]
gi|228624676|gb|EEK81445.1| hypothetical protein bcere0010_48650 [Bacillus cereus ATCC 4342]
gi|228658969|gb|EEL14624.1| hypothetical protein bcere0016_49130 [Bacillus cereus 95/8201]
gi|228689206|gb|EEL43028.1| hypothetical protein bcere0021_49240 [Bacillus cereus Rock3-42]
gi|228810792|gb|EEM57138.1| hypothetical protein bthur0007_49530 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228823244|gb|EEM69078.1| hypothetical protein bthur0009_48490 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228829626|gb|EEM75253.1| hypothetical protein bthur0010_48090 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228841967|gb|EEM87073.1| hypothetical protein bthur0012_49340 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|229265097|gb|ACQ46734.1| SsrA-binding protein [Bacillus anthracis str. A0248]
gi|300378756|gb|ADK07660.1| SsrA-binding protein [Bacillus cereus biovar anthracis str. CI]
gi|324329031|gb|ADY24291.1| SsrA-binding protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 155
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L
Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLAGASKETGYALVPVRIYLK-NGFAKMAL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKR K+++ R+ R R+
Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|206900869|ref|YP_002251065.1| SsrA-binding protein [Dictyoglomus thermophilum H-6-12]
gi|206739972|gb|ACI19030.1| SsrA-binding protein [Dictyoglomus thermophilum H-6-12]
Length = 153
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 73/135 (54%), Positives = 96/135 (71%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KK+V+ NRKAR++Y I+ +FEAGI LTGTEVKSLR KV++ DSYA +N E+W+ N
Sbjct: 3 KGKKIVAVNRKARHDYSILETFEAGIALTGTEVKSLRNGKVSLQDSYADVKNGEVWIYNL 62
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y N +NH P+R RKLLL+K EI L V+ G+TL+P+ IYFN +G AK++L
Sbjct: 63 HISPYEHGNIYNHDPKRPRKLLLNKDEIAYLVGKVKERGLTLIPLSIYFNERGWAKVELG 122
Query: 129 LAQGKKNYDKRETEK 143
LA+GKK YDKR
Sbjct: 123 LAKGKKLYDKRRDIA 137
>gi|104780005|ref|YP_606503.1| SsrA-binding protein [Pseudomonas entomophila L48]
gi|166223239|sp|Q1IF66|SSRP_PSEE4 RecName: Full=SsrA-binding protein
gi|95108992|emb|CAK13688.1| ssrA-binding protein [Pseudomonas entomophila L48]
Length = 160
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL+KRE+ RL AAV + G T V M +Y++
Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPIRTRKLLLNKRELERLEAAVAQKGYTCVAMSLYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK +DKR+T ++RD +R+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTVRERDSNRELQRTMRNK 156
>gi|167755321|ref|ZP_02427448.1| hypothetical protein CLORAM_00834 [Clostridium ramosum DSM 1402]
gi|237734211|ref|ZP_04564692.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|167704260|gb|EDS18839.1| hypothetical protein CLORAM_00834 [Clostridium ramosum DSM 1402]
gi|229382771|gb|EEO32862.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 150
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 103/149 (69%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K+VS+N+KA ++Y I+ ++EAGI L GTE+KS+R+ VN+ D++ +++E ++ N +
Sbjct: 2 GMKIVSNNKKAYHDYFILDTYEAGIELKGTEIKSVRLGNVNLKDAFVRIKDNEAYIENMH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N+FNH P RNRKLLL K+EI ++ ++ G+T+VP K+YFN K+++ +
Sbjct: 62 ISPYSHGNQFNHEPLRNRKLLLHKKEILKISNKLKEGGLTVVPTKLYFNTGSKVKLEIGI 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK YDKR+ K+RD R+ + L+ +
Sbjct: 122 ARGKKLYDKRQDLKERDSKREIEKALKNY 150
>gi|330719319|ref|ZP_08313919.1| SsrA-binding protein [Leuconostoc fallax KCTC 3537]
Length = 153
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 4/157 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K N V++ NRKAR+NY+I+ ++EAGI LTGTE+KS+R ++ ISD + T N
Sbjct: 1 MAKK---NVNDNVIAQNRKARFNYNIIDTYEAGIALTGTEIKSVRAGQITISDGFVTVHN 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
LTN +I Y Q N+FN P R R+LLL KREI L AV+ G+T+VP+K+Y
Sbjct: 58 KTALLTNVHISTYAQGNQFNVDPLRTRQLLLHKREIVALEKAVQESGITIVPLKVYMK-H 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+ + + QGKK YDKRE K+RD +R+ R L+
Sbjct: 117 GFAKVLIGIGQGKKKYDKREDIKRRDQERELGRRLKH 153
>gi|139438926|ref|ZP_01772386.1| Hypothetical protein COLAER_01392 [Collinsella aerofaciens ATCC
25986]
gi|133775637|gb|EBA39457.1| Hypothetical protein COLAER_01392 [Collinsella aerofaciens ATCC
25986]
Length = 156
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 88/153 (57%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K++S NR A + Y I +FE GI L+GTEVKS+R I+D++A E WL
Sbjct: 3 SKRERKLISKNRSAHHEYFIDETFECGIELSGTEVKSIRERACQITDTFALIRGGECWLV 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y +N P R R+LLL ++EI L +R G LVP+++YFN G K+
Sbjct: 63 GLHIHPYSHGGVWNRDPDRRRRLLLHRKEIDFLDGKLRNRGYALVPLELYFNTDGRVKLL 122
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L L +GKK YDKRE KRD R+ R L+E N
Sbjct: 123 LGLGRGKKLYDKREDMAKRDVQREIDRALKERN 155
>gi|108763344|ref|YP_630286.1| SsrA-binding protein [Myxococcus xanthus DK 1622]
gi|123374695|sp|Q1DAN7|SSRP_MYXXD RecName: Full=SsrA-binding protein
gi|108467224|gb|ABF92409.1| SsrA-binding protein [Myxococcus xanthus DK 1622]
Length = 162
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
S P +V+++NR+AR++Y + EAG+ LTG+EVKSLR N+SD+YA + D
Sbjct: 7 SKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAYALPKGD 66
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E++L N+ I Y A+ F+H P R RKLL+ + EI R A VR G +++P+ +YF G
Sbjct: 67 ELFLLNANIGSYKAASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVLYFR-NG 125
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++L L +GK + D+R K+R+ R+ R +R
Sbjct: 126 RAKVELGLCRGKTHEDRRHDIKERETKREMDRAMRRR 162
>gi|228993833|ref|ZP_04153737.1| hypothetical protein bpmyx0001_45570 [Bacillus pseudomycoides DSM
12442]
gi|228999859|ref|ZP_04159431.1| hypothetical protein bmyco0003_44120 [Bacillus mycoides Rock3-17]
gi|229007413|ref|ZP_04165010.1| hypothetical protein bmyco0002_42920 [Bacillus mycoides Rock1-4]
gi|228753801|gb|EEM03242.1| hypothetical protein bmyco0002_42920 [Bacillus mycoides Rock1-4]
gi|228759801|gb|EEM08775.1| hypothetical protein bmyco0003_44120 [Bacillus mycoides Rock3-17]
gi|228765889|gb|EEM14539.1| hypothetical protein bpmyx0001_45570 [Bacillus pseudomycoides DSM
12442]
Length = 164
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
KV++ N+K ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W
Sbjct: 9 KMPKGSGKVIAQNKKVFHDYFIDETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVW 68
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ N +I Y Q NRFNH P R RKLLL K+EI +L + G TLVP+KIY G AK
Sbjct: 69 VYNMHISPYEQGNRFNHEPLRTRKLLLHKKEIDKLIGYSKETGYTLVPVKIYLK-NGFAK 127
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +A+GKK YDKR K+++ R+ R R+
Sbjct: 128 MALGVARGKKQYDKRHDLKEKEAKREIARAFRDR 161
>gi|330814150|ref|YP_004358389.1| tmRNA-binding protein SmpB [Candidatus Pelagibacter sp. IMCC9063]
gi|327487245|gb|AEA81650.1| tmRNA-binding protein SmpB [Candidatus Pelagibacter sp. IMCC9063]
Length = 157
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 88/155 (56%), Positives = 112/155 (72%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + P +V NRKA +N+ E+GI L G EVKSLR K IS+SYAT + E
Sbjct: 1 MSVKKKPVDNIVCQNRKASFNFFFEEIVESGIELVGPEVKSLRSGKATISESYATDQEGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I+L NSYIP+YLQ++ NH P+RNRKLLL KREI +L + RDG +LVP KIYFN KG+
Sbjct: 61 IFLINSYIPQYLQSSYNNHDPKRNRKLLLKKREISKLIGKINRDGYSLVPTKIYFNKKGI 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ +ALA+GKKN+DKRET+K RDWDR+K RI R+
Sbjct: 121 AKVQIALAKGKKNHDKRETKKNRDWDREKSRIFRK 155
>gi|291534156|emb|CBL07269.1| SsrA-binding protein [Megamonas hypermegale ART12/1]
Length = 157
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/153 (50%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N K+V +NRKAR++Y I ++EAGIVL GTEVKSLR K N+ DS+A +N+EI+L
Sbjct: 3 KKNASVKIVCENRKARHDYFIHETYEAGIVLVGTEVKSLRAGKANLKDSFAKIKNNEIFL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y Q N FNH P R RKLL+ K EI +L + ++ G TLVP+K+YF+ KG AK+
Sbjct: 63 DNMHISPYEQGNIFNHDPLRARKLLMHKIEIVKLSSKIKEKGFTLVPLKVYFS-KGRAKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L LA GKKNYDKR+ ++ R R L+E
Sbjct: 122 ALGLATGKKNYDKRQALAEKVAKRDVERALKER 154
>gi|206889318|ref|YP_002249012.1| SsrA-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741256|gb|ACI20313.1| SsrA-binding protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 149
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K+V N+KA +Y I + EAGIVLTGTEVKSLR K N+ DSY +++E WL N +
Sbjct: 2 SIKIVCQNKKAYADYFIDETIEAGIVLTGTEVKSLRQGKANLKDSYVIIKDNEAWLLNCH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N FNH P R RKLLL K+EI RL +++ G TL+P+KIYF K+++AL
Sbjct: 62 ISPYSHGNIFNHDPLRTRKLLLHKKEIERLRGKIQQQGYTLIPLKIYFKGP-YVKVEIAL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+G+K Y+KR+ KK++ R+ R L+
Sbjct: 121 ARGRKKYEKRDIIKKKEAQREIERALKNK 149
>gi|315606126|ref|ZP_07881157.1| SsrA-binding protein [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312408|gb|EFU60494.1| SsrA-binding protein [Actinomyces sp. oral taxon 180 str. F0310]
Length = 175
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KK ++ N+KAR++Y I ++EAG+ L GTEVK+LR+ + ++ D++ E W
Sbjct: 17 KAASDAKKTIARNKKARHDYTIEDTWEAGLSLMGTEVKALRMGRASLVDAWVEINGGEAW 76
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IP Y Q + NH P R RKLLL + EI R+ V G T+VP+++YF G K
Sbjct: 77 LYGANIPLYSQGSWTNHAPTRKRKLLLHRAEIDRMADRVSAKGYTIVPLELYFIG-GRVK 135
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ALA+GK+ +DKR+ +++ R+ R +R +
Sbjct: 136 VEIALAKGKQEWDKRQALREKQDQREAERAIRRY 169
>gi|89091956|ref|ZP_01164911.1| SsrA-binding protein [Oceanospirillum sp. MED92]
gi|89083691|gb|EAR62908.1| SsrA-binding protein [Oceanospirillum sp. MED92]
Length = 157
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + P + N+K R+ Y I FEAG+ LTG EVKSLR + + DSY
Sbjct: 1 MAKKKKA-PSGNTICQNKKVRHEYIIEDKFEAGLSLTGWEVKSLREGRAQLVDSYVVIHK 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL ++ P R+RKLLL +REI ++ A + G T V + IY+
Sbjct: 60 GEAWLVGAHFTPLKTACTHVVADPTRDRKLLLHRREIDKIIGATQAKGYTCVALSIYWKQ 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K ++ALA+GKK +DKR +K RDW RQK R++
Sbjct: 120 NH-IKCEIALAKGKKQHDKRAADKDRDWARQKQRLM 154
>gi|148264140|ref|YP_001230846.1| SsrA-binding protein [Geobacter uraniireducens Rf4]
gi|189046829|sp|A5G3A5|SSRP_GEOUR RecName: Full=SsrA-binding protein
gi|146397640|gb|ABQ26273.1| SsrA-binding protein [Geobacter uraniireducens Rf4]
Length = 151
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I FEAG+VL GTEVKSLR+ K N++DS+A +N E +L N +
Sbjct: 2 SEKLICNNKKAYHDYFIEEKFEAGMVLKGTEVKSLRIGKANLNDSFALVKNGEAFLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLLL K+EI +L++ +R G T+VP+++YF GL K+++ L
Sbjct: 62 ISPYDFGNRENHDPDRMRKLLLHKKEIGKLFSMIREQGYTVVPLRLYFKD-GLVKVEVGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R L+E N
Sbjct: 121 AKGKKLYDKREDMKKKDMRRDVAVALKERN 150
>gi|53719746|ref|YP_108732.1| SsrA-binding protein [Burkholderia pseudomallei K96243]
gi|53723716|ref|YP_103172.1| SsrA-binding protein [Burkholderia mallei ATCC 23344]
gi|67641688|ref|ZP_00440457.1| SsrA-binding protein [Burkholderia mallei GB8 horse 4]
gi|76811028|ref|YP_333950.1| SsrA-binding protein [Burkholderia pseudomallei 1710b]
gi|121601426|ref|YP_993348.1| SsrA-binding protein [Burkholderia mallei SAVP1]
gi|124385560|ref|YP_001029216.1| SsrA-binding protein [Burkholderia mallei NCTC 10229]
gi|126441609|ref|YP_001059444.1| SsrA-binding protein [Burkholderia pseudomallei 668]
gi|126448860|ref|YP_001080854.1| SsrA-binding protein [Burkholderia mallei NCTC 10247]
gi|126453935|ref|YP_001066726.1| SsrA-binding protein [Burkholderia pseudomallei 1106a]
gi|134278041|ref|ZP_01764756.1| SsrA-binding protein [Burkholderia pseudomallei 305]
gi|167000576|ref|ZP_02266387.1| SsrA-binding protein [Burkholderia mallei PRL-20]
gi|167720138|ref|ZP_02403374.1| SsrA-binding protein [Burkholderia pseudomallei DM98]
gi|167739145|ref|ZP_02411919.1| SsrA-binding protein [Burkholderia pseudomallei 14]
gi|167816355|ref|ZP_02448035.1| SsrA-binding protein [Burkholderia pseudomallei 91]
gi|167824734|ref|ZP_02456205.1| SsrA-binding protein [Burkholderia pseudomallei 9]
gi|167846268|ref|ZP_02471776.1| SsrA-binding protein [Burkholderia pseudomallei B7210]
gi|167894848|ref|ZP_02482250.1| SsrA-binding protein [Burkholderia pseudomallei 7894]
gi|167903238|ref|ZP_02490443.1| SsrA-binding protein [Burkholderia pseudomallei NCTC 13177]
gi|167911478|ref|ZP_02498569.1| SsrA-binding protein [Burkholderia pseudomallei 112]
gi|167919489|ref|ZP_02506580.1| SsrA-binding protein [Burkholderia pseudomallei BCC215]
gi|217421443|ref|ZP_03452947.1| SsrA-binding protein [Burkholderia pseudomallei 576]
gi|226200139|ref|ZP_03795685.1| SsrA-binding protein [Burkholderia pseudomallei Pakistan 9]
gi|237812783|ref|YP_002897234.1| SsrA-binding protein [Burkholderia pseudomallei MSHR346]
gi|242314586|ref|ZP_04813602.1| SsrA-binding protein [Burkholderia pseudomallei 1106b]
gi|254179345|ref|ZP_04885944.1| SsrA-binding protein [Burkholderia pseudomallei 1655]
gi|254189268|ref|ZP_04895779.1| SsrA-binding protein [Burkholderia pseudomallei Pasteur 52237]
gi|254197660|ref|ZP_04904082.1| SsrA-binding protein [Burkholderia pseudomallei S13]
gi|254200123|ref|ZP_04906489.1| SsrA-binding protein [Burkholderia mallei FMH]
gi|254206461|ref|ZP_04912813.1| SsrA-binding protein [Burkholderia mallei JHU]
gi|254261679|ref|ZP_04952733.1| SsrA-binding protein [Burkholderia pseudomallei 1710a]
gi|254297229|ref|ZP_04964682.1| SsrA-binding protein [Burkholderia pseudomallei 406e]
gi|254358130|ref|ZP_04974403.1| SsrA-binding protein [Burkholderia mallei 2002721280]
gi|61216460|sp|Q62JE7|SSRP_BURMA RecName: Full=SsrA-binding protein
gi|61216467|sp|Q63T34|SSRP_BURPS RecName: Full=SsrA-binding protein
gi|123598746|sp|Q3JR53|SSRP_BURP1 RecName: Full=SsrA-binding protein
gi|166222367|sp|A3MKR8|SSRP_BURM7 RecName: Full=SsrA-binding protein
gi|166222368|sp|A2SB97|SSRP_BURM9 RecName: Full=SsrA-binding protein
gi|166222369|sp|A1V545|SSRP_BURMS RecName: Full=SsrA-binding protein
gi|166222370|sp|A3NWK5|SSRP_BURP0 RecName: Full=SsrA-binding protein
gi|166222371|sp|A3NAS3|SSRP_BURP6 RecName: Full=SsrA-binding protein
gi|52210160|emb|CAH36139.1| SSRA-binding protein [Burkholderia pseudomallei K96243]
gi|52427139|gb|AAU47732.1| SsrA-binding protein [Burkholderia mallei ATCC 23344]
gi|76580481|gb|ABA49956.1| SsrA-binding protein [Burkholderia pseudomallei 1710b]
gi|121230236|gb|ABM52754.1| SsrA-binding protein [Burkholderia mallei SAVP1]
gi|124293580|gb|ABN02849.1| SsrA-binding protein [Burkholderia mallei NCTC 10229]
gi|126221102|gb|ABN84608.1| SsrA-binding protein [Burkholderia pseudomallei 668]
gi|126227577|gb|ABN91117.1| SsrA-binding protein [Burkholderia pseudomallei 1106a]
gi|126241730|gb|ABO04823.1| SsrA-binding protein [Burkholderia mallei NCTC 10247]
gi|134251691|gb|EBA51770.1| SsrA-binding protein [Burkholderia pseudomallei 305]
gi|147749719|gb|EDK56793.1| SsrA-binding protein [Burkholderia mallei FMH]
gi|147753904|gb|EDK60969.1| SsrA-binding protein [Burkholderia mallei JHU]
gi|148027257|gb|EDK85278.1| SsrA-binding protein [Burkholderia mallei 2002721280]
gi|157807136|gb|EDO84306.1| SsrA-binding protein [Burkholderia pseudomallei 406e]
gi|157936947|gb|EDO92617.1| SsrA-binding protein [Burkholderia pseudomallei Pasteur 52237]
gi|169654401|gb|EDS87094.1| SsrA-binding protein [Burkholderia pseudomallei S13]
gi|184209885|gb|EDU06928.1| SsrA-binding protein [Burkholderia pseudomallei 1655]
gi|217395185|gb|EEC35203.1| SsrA-binding protein [Burkholderia pseudomallei 576]
gi|225927823|gb|EEH23864.1| SsrA-binding protein [Burkholderia pseudomallei Pakistan 9]
gi|237506272|gb|ACQ98590.1| SsrA-binding protein [Burkholderia pseudomallei MSHR346]
gi|238522647|gb|EEP86090.1| SsrA-binding protein [Burkholderia mallei GB8 horse 4]
gi|242137825|gb|EES24227.1| SsrA-binding protein [Burkholderia pseudomallei 1106b]
gi|243063504|gb|EES45690.1| SsrA-binding protein [Burkholderia mallei PRL-20]
gi|254220368|gb|EET09752.1| SsrA-binding protein [Burkholderia pseudomallei 1710a]
Length = 148
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++ EI+L ++I
Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKHAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|307824123|ref|ZP_07654350.1| SsrA-binding protein [Methylobacter tundripaludum SV96]
gi|307734907|gb|EFO05757.1| SsrA-binding protein [Methylobacter tundripaludum SV96]
Length = 161
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 93/155 (60%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K ++ NR+A + Y I FEAG+VL G EVKSLR ++ + +SY E
Sbjct: 7 KKNTKQQNATIAVNRQATFEYSIEERFEAGVVLEGWEVKSLRDGRIQLKESYVVIRRGEA 66
Query: 64 WLTNSYIPE-YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL+ ++I + N R +KLLL + E+++L +V R G TL+P+K+Y+ G
Sbjct: 67 WLSGAHISPLLSASTHVNPDSIRAKKLLLHRHELNKLIGSVERKGYTLIPLKMYWK-NGR 125
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+++ LA+GK+ +DKR T K RDW R+K RIL++
Sbjct: 126 AKLEIGLAKGKQLHDKRATSKDRDWQREKGRILKK 160
>gi|304407260|ref|ZP_07388913.1| SsrA-binding protein [Paenibacillus curdlanolyticus YK9]
gi|304343701|gb|EFM09542.1| SsrA-binding protein [Paenibacillus curdlanolyticus YK9]
Length = 160
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ + K ++ N+KA ++Y I ++EAGIVLTGTE+KS+R + NISD++AT N
Sbjct: 1 MAKQTHDS---KPLAQNKKASHDYFIEDTYEAGIVLTGTEIKSVRNGRANISDAFATIRN 57
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+++ N +I + Q NR N P R RKLLL K +IH+L +++G T+VP+KIY
Sbjct: 58 GEMFVHNMHISPFEQGNRHNPTDPTRARKLLLHKVQIHKLLGLSKQEGYTIVPLKIYVR- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + L +GKKNYDKR+T KRD R R LRE
Sbjct: 117 NGYAKLLIGLGKGKKNYDKRDTAAKRDAQRDIQRALREK 155
>gi|210621920|ref|ZP_03292907.1| hypothetical protein CLOHIR_00852 [Clostridium hiranonis DSM 13275]
gi|210154490|gb|EEA85496.1| hypothetical protein CLOHIR_00852 [Clostridium hiranonis DSM 13275]
Length = 151
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 1/146 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KV++ N+KAR+ + I ++E GI L GTEVKS+R +VN+ + Y + +N E+++ +
Sbjct: 3 GVKVLATNKKARHEFFIEETYECGIELKGTEVKSIRRGRVNLKEGYCSVDNGEVFMKQVH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N FN P R RKLLL K EI +L A G +LVP+ +Y G K+++AL
Sbjct: 63 ISPYEHGNIFNVDPLRVRKLLLHKHEIRKLIGATTVKGYSLVPLSMYLK-NGRVKVEIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRIL 155
A+GKK YDKR+ K+D R+ R +
Sbjct: 122 AKGKKLYDKRQDLAKKDAKRRIEREM 147
>gi|307692793|ref|ZP_07635030.1| SsrA-binding protein [Ruminococcaceae bacterium D16]
Length = 155
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N KA ++Y I +EAGI L GTEVKS+R VN+ DS+ ++ ++ + +I
Sbjct: 6 KVVAKNSKAYHDYFIEEKYEAGIELAGTEVKSIRQGHVNLKDSFCHIKDGQMSVIGMHIS 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N FN P R R+LL+ KREI RL+A +++DG +L+P+ +YF K+++ LA+
Sbjct: 66 PYEKGNIFNKDPLRQRRLLMHKREIMRLFAHIKQDGYSLIPLSVYFKGP-RVKLEIGLAK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKRE+ +RD R+ R ++ N
Sbjct: 125 GKKLYDKRESAARRDAKREMDRTMKSRN 152
>gi|58581646|ref|YP_200662.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188577116|ref|YP_001914045.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|67461876|sp|Q5H194|SSRP_XANOR RecName: Full=SsrA-binding protein
gi|238689543|sp|B2SQV2|SSRP_XANOP RecName: Full=SsrA-binding protein
gi|58426240|gb|AAW75277.1| small protein B [Xanthomonas oryzae pv. oryzae KACC10331]
gi|188521568|gb|ACD59513.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 167
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D Y
Sbjct: 1 MSKKPTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP
Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+++ K+++ALA+GK+N+DKR+ K+RDW R K R++R HN
Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKERDWQRDKQRVMRRHN 164
>gi|197119380|ref|YP_002139807.1| SsrA-binding protein [Geobacter bemidjiensis Bem]
gi|197088740|gb|ACH40011.1| SsrA-binding protein [Geobacter bemidjiensis Bem]
Length = 159
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K++ +N+KA ++Y I +EAG+VL GTEVKSLR K N++DS+A +N E +L N +I
Sbjct: 5 EKLICNNKKAFHDYFIEERYEAGMVLQGTEVKSLRNGKANLNDSFAMVKNGEAFLHNFHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y NR NH P R RKLLL K+EI +L+A +R G TL+P+++YF G K +L LA
Sbjct: 65 NPYDFGNRENHDPDRMRKLLLHKKEIVKLFAKIREQGYTLIPLRVYFKE-GKVKAELGLA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKKNYDKRE K++D R + L++ N
Sbjct: 124 KGKKNYDKREVMKEKDMQRDIAQGLKDRN 152
>gi|311069883|ref|YP_003974806.1| SsrA-binding protein [Bacillus atrophaeus 1942]
gi|310870400|gb|ADP33875.1| SsrA-binding protein [Bacillus atrophaeus 1942]
Length = 156
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/150 (46%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV+S N+KA ++Y I ++E GIVL GTE+KS+R +VN+ DS+A E E++L N
Sbjct: 3 KGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIEGGEVFLHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NR+NH P R RKLL+ ++EI++L + G +LVP+K+Y G AK+ L
Sbjct: 63 MHISPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLK-NGFAKVLL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L +GKKNYDKRE K++D R+ R R+
Sbjct: 122 GLGKGKKNYDKREDLKRKDAKREIERAFRD 151
>gi|262378881|ref|ZP_06072038.1| SsrA-binding protein [Acinetobacter radioresistens SH164]
gi|262300166|gb|EEY88078.1| SsrA-binding protein [Acinetobacter radioresistens SH164]
Length = 158
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY +N E
Sbjct: 5 KVVKKNNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYILLKNGEA 64
Query: 64 WLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I P + R RKLLLSKREI +L AV + G T VP+ Y+ L
Sbjct: 65 YLFGAQIQPLLSASTHIVAEATRTRKLLLSKREIEKLMGAVNQKGYTCVPLACYWKGP-L 123
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K+++AL +GK+ +DKR TEK RDW R K RI
Sbjct: 124 VKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156
>gi|218900248|ref|YP_002448659.1| SsrA-binding protein [Bacillus cereus G9842]
gi|228968207|ref|ZP_04129206.1| hypothetical protein bthur0004_49860 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|229099551|ref|ZP_04230479.1| hypothetical protein bcere0020_47690 [Bacillus cereus Rock3-29]
gi|229105727|ref|ZP_04236356.1| hypothetical protein bcere0019_48530 [Bacillus cereus Rock3-28]
gi|229118616|ref|ZP_04247968.1| hypothetical protein bcere0017_48810 [Bacillus cereus Rock1-3]
gi|226734245|sp|B7IP12|SSRP_BACC2 RecName: Full=SsrA-binding protein
gi|218545491|gb|ACK97885.1| SsrA-binding protein [Bacillus cereus G9842]
gi|228664808|gb|EEL20298.1| hypothetical protein bcere0017_48810 [Bacillus cereus Rock1-3]
gi|228677616|gb|EEL31864.1| hypothetical protein bcere0019_48530 [Bacillus cereus Rock3-28]
gi|228683847|gb|EEL37797.1| hypothetical protein bcere0020_47690 [Bacillus cereus Rock3-29]
gi|228791470|gb|EEM39073.1| hypothetical protein bthur0004_49860 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 155
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R+ R+
Sbjct: 126 GKKQYDKRHDLKEKEAKREIARVFRDR 152
>gi|172060947|ref|YP_001808599.1| SsrA-binding protein [Burkholderia ambifaria MC40-6]
gi|171993464|gb|ACB64383.1| SsrA-binding protein [Burkholderia ambifaria MC40-6]
Length = 148
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIHPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|78047112|ref|YP_363287.1| SsrA-binding protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|294625456|ref|ZP_06704086.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|294666517|ref|ZP_06731759.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|325928721|ref|ZP_08189891.1| SsrA-binding protein [Xanthomonas perforans 91-118]
gi|123585460|sp|Q3BVC6|SSRP_XANC5 RecName: Full=SsrA-binding protein
gi|78035542|emb|CAJ23188.1| SsrA-binding protein SmpB [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|292600223|gb|EFF44330.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292603748|gb|EFF47157.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|325540889|gb|EGD12461.1| SsrA-binding protein [Xanthomonas perforans 91-118]
Length = 167
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y
Sbjct: 1 MSKKQTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP
Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN
Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164
>gi|293384093|ref|ZP_06629987.1| SsrA-binding protein [Enterococcus faecalis R712]
gi|291078573|gb|EFE15937.1| SsrA-binding protein [Enterococcus faecalis R712]
Length = 154
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N
Sbjct: 3 KGGGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ +
Sbjct: 63 VHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNAGITLVPLKVYIKD-GYAKVLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKRE K+++ DRQ R L+ +
Sbjct: 122 GLAKGKKQYDKREDLKRKEVDRQISRTLKNN 152
>gi|153566|gb|AAA26852.1| ORF (19K protein) [Enterococcus faecalis]
Length = 163
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I
Sbjct: 16 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFVRIRNGEAFLHNVHIS 75
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL + G+T+VP+K+Y G AK+ + LA+
Sbjct: 76 PYEQGNIFNHDPLRTRKLLLHKKQISRLETETKNTGVTIVPLKVYIRD-GYAKVLIGLAK 134
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK+YDKRE K++D DRQ R L+ +
Sbjct: 135 GKKSYDKREDLKRKDVDRQIDRTLKNFS 162
>gi|300311517|ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1]
gi|300074302|gb|ADJ63701.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1]
Length = 149
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DN+KA ++Y I FEAG+VL G EVKS+R +V + ++Y N E++L +I
Sbjct: 3 IIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHISAL 62
Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL+ EI +L V R G TLVP+ +++N KG K D+ LA+G
Sbjct: 63 TSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYN-KGRIKCDIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRETEK+RD R+ +++H
Sbjct: 122 KKQHDKRETEKQRDSQREIQTAMKQH 147
>gi|229072575|ref|ZP_04205777.1| hypothetical protein bcere0025_47360 [Bacillus cereus F65185]
gi|228710551|gb|EEL62524.1| hypothetical protein bcere0025_47360 [Bacillus cereus F65185]
Length = 155
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y + ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFLEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R R+
Sbjct: 126 GKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|255283248|ref|ZP_05347803.1| SsrA-binding protein [Bryantella formatexigens DSM 14469]
gi|255266102|gb|EET59307.1| SsrA-binding protein [Bryantella formatexigens DSM 14469]
Length = 157
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA ++Y I +FEAGI L GTEVKSLR+ K ++ +S+ EN E+ + +I
Sbjct: 7 KLIANNKKAYHDYFIEDTFEAGISLAGTEVKSLRMGKCSVKESFIRIENGEVIIYGMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N FN P R RKLL+ + EI++L ++ GMTLVP+K+YF L K+++ LA+
Sbjct: 67 PYEKGNIFNKDPLRERKLLMHRHEINKLTGKMKEKGMTLVPLKVYFKGS-LVKVEVGLAR 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKRE KRD R+ + +E N
Sbjct: 126 GKKLYDKREDIAKRDQRREAEKEFKERN 153
>gi|119775522|ref|YP_928262.1| SsrA-binding protein [Shewanella amazonensis SB2B]
gi|166223450|sp|A1S886|SSRP_SHEAM RecName: Full=SsrA-binding protein
gi|119768022|gb|ABM00593.1| SsrA-binding protein [Shewanella amazonensis SB2B]
Length = 160
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M K S+ ++ N++A + Y FEAG+ L G EVKS+R K+NIS+SY +
Sbjct: 1 MVKKNSKKAAQPATIARNKRATFEYKFDEKFEAGLSLMGWEVKSIRAGKINISESYVMLK 60
Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E +L + +I P + + P R RKLLL++RE+ RL V R G +VP+ +Y+
Sbjct: 61 NGEAFLHHCHITPLHAASTHVVCDPTRPRKLLLNRRELDRLAGLVERQGYAIVPISMYWR 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ L +GKK +DKR+ K+RDWD +K R+++
Sbjct: 121 KGAWVKVEIGLGKGKKAHDKRDDIKQRDWDIEKARVMKNK 160
>gi|220928268|ref|YP_002505177.1| SsrA-binding protein [Clostridium cellulolyticum H10]
gi|254778354|sp|B8I8G4|SSRP_CLOCE RecName: Full=SsrA-binding protein
gi|219998596|gb|ACL75197.1| SsrA-binding protein [Clostridium cellulolyticum H10]
Length = 154
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+V+ N+KAR++Y I + EAGIVL+GTEVKS+R K+N+ +SYA+ E+ ++
Sbjct: 3 KEAVKIVAQNKKARHDYFIEETIEAGIVLSGTEVKSVRQGKLNLKESYASIVEGEVIVSG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N FN P R+RKLLL K EI+RL ++ G TLVP++ Y +G+ KI+L
Sbjct: 63 MHISPYEQGNIFNKDPLRDRKLLLHKSEINRLIGLTQQKGYTLVPVQAYLK-RGMVKIEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+GKK YDKR+ RD R+ R ++E
Sbjct: 122 GVARGKKLYDKRDDIAARDAKREIDRKMKE 151
>gi|227510626|ref|ZP_03940675.1| SsrA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
gi|227524786|ref|ZP_03954835.1| SsrA-binding protein [Lactobacillus hilgardii ATCC 8290]
gi|227088042|gb|EEI23354.1| SsrA-binding protein [Lactobacillus hilgardii ATCC 8290]
gi|227190278|gb|EEI70345.1| SsrA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC
27305]
Length = 157
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +++ N+KAR++Y I+ ++EAGIVLTGTE+KS+R ++N+ D + N
Sbjct: 1 MAKRKHKQNNDNLMAQNKKARHDYSILETYEAGIVLTGTEIKSIRDRRINLKDGFVQIRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E ++ N +I EY Q N+FNH P RNRKLLL K+EI +L A + G+T+VP+K+Y +
Sbjct: 61 GEAYMVNVHISEYAQGNQFNHDPLRNRKLLLHKKEIRKLGQATQDKGVTIVPLKVYLKS- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GK+ YDKRET K+RD R R+++
Sbjct: 120 GFAKVLIGVAKGKREYDKRETIKRRDEQRTIERVMKRF 157
>gi|295100446|emb|CBK97991.1| SsrA-binding protein [Faecalibacterium prausnitzii L2-6]
Length = 160
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ E+ E+
Sbjct: 4 AKERPATKTIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIEDGELL 63
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ +I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K
Sbjct: 64 VKGMHITPYDHGNIFNQDPLRVRRLLAHKTEIRRLHQQCKLQGYTLVPLSLYFK-HGRVK 122
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ L +GKK YDKR KRD R R ++ +
Sbjct: 123 MEIGLCKGKKLYDKRADAAKRDAKRSIDRAVKSN 156
>gi|227502944|ref|ZP_03932993.1| SsrA-binding protein [Corynebacterium accolens ATCC 49725]
gi|227076366|gb|EEI14329.1| SsrA-binding protein [Corynebacterium accolens ATCC 49725]
Length = 180
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
++ NR+AR++Y I+ FE GIVL GTE+KSLR K++++D++AT +N E++L N
Sbjct: 26 SGDATLATNRRARHDYKILEEFECGIVLLGTEIKSLREGKISLNDAFATIDNGEVYLRNL 85
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY + NH PRR RKLLL +REI +LY VR TLVP+K+Y G AK+ LA
Sbjct: 86 HIPEYSMGSWTNHSPRRTRKLLLHRREIDKLYGQVRNGNKTLVPLKVYLK-NGYAKLSLA 144
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LAQGK++YDKRE K+RD +R+ R L
Sbjct: 145 LAQGKQDYDKREDIKRRDQNREITRELGRR 174
>gi|326383349|ref|ZP_08205037.1| SsrA-binding protein [Gordonia neofelifaecis NRRL B-59395]
gi|326198099|gb|EGD55285.1| SsrA-binding protein [Gordonia neofelifaecis NRRL B-59395]
Length = 157
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K V++ NRKAR+NY I+ +FEAG+VL GTEVK+LR K ++ D++AT ++ E+WL
Sbjct: 5 KGKSVIATNRKARHNYTILETFEAGMVLQGTEVKALRDGKASLVDAFATIDDGEVWLNAV 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY NH PRR RKLL+ +REI L +R +TLVP+ +YF+ G AK++LA
Sbjct: 65 HIAEYGSGTWTNHPPRRKRKLLMHRREIDGLIGKLRDGNLTLVPLSMYFSD-GYAKVELA 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK+ +DKR +R R+ R +
Sbjct: 124 LAKGKQAHDKRRDIAERTAKREVERTVGRR 153
>gi|330432429|gb|AEC17488.1| SsrA-binding protein [Gallibacterium anatis UMN179]
Length = 159
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++ N++AR++Y I EAG+ L G EVKSLR K NI DSY F+N
Sbjct: 1 MTKKKVTKK-DNTIALNKRARHDYFIEDEVEAGLALQGWEVKSLRAGKANIGDSYVIFQN 59
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R RKLLLSKREI L+ RDG T+V + +Y+ +
Sbjct: 60 GEAFLFGANITPLNVASSHIVCDPTRTRKLLLSKREIDSLFGKSNRDGYTIVALSLYWKS 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + +A+GKK +DKR+ K+R+W K RI++
Sbjct: 120 -AWAKVKIGIAKGKKQHDKRQDIKEREWKLTKDRIMKN 156
>gi|159897968|ref|YP_001544215.1| SsrA-binding protein [Herpetosiphon aurantiacus ATCC 23779]
gi|159891007|gb|ABX04087.1| SsrA-binding protein [Herpetosiphon aurantiacus ATCC 23779]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +V+ DNRKAR++Y I ++EAGIVL GTE+KS+R +V + SYA +N E
Sbjct: 1 MAKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGE 60
Query: 63 IWLTNSYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
IWL +++I Y + FNH P R RKLLL +REI +L+ + G+TLVP++IY +
Sbjct: 61 IWLYDAHIAPYAETGELFNHEPMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGR- 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LAKI+L LAQGKK YDKR++ RD RQ R ++
Sbjct: 120 LAKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNR 156
>gi|255318861|ref|ZP_05360087.1| SsrA-binding protein [Acinetobacter radioresistens SK82]
gi|255304117|gb|EET83308.1| SsrA-binding protein [Acinetobacter radioresistens SK82]
Length = 160
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY +N E
Sbjct: 7 KVVKKNNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYILLKNGEA 66
Query: 64 WLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I P + R RKLLLSKREI +L AV + G T VP+ Y+ L
Sbjct: 67 YLFGAQIQPLLSASTHIVAEATRTRKLLLSKREIEKLMGAVNQKGYTCVPLACYWKGP-L 125
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K+++AL +GK+ +DKR TEK RDW R K RI
Sbjct: 126 VKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 158
>gi|256826996|ref|YP_003150955.1| SsrA-binding protein [Cryptobacterium curtum DSM 15641]
gi|256583139|gb|ACU94273.1| SsrA-binding protein [Cryptobacterium curtum DSM 15641]
Length = 155
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 92/149 (61%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K+++ NR AR+ Y ++ ++E GI L GTEV SLR + ++D +A E+WL N +I
Sbjct: 5 EKLIARNRSARHEYEVLSTYECGIQLAGTEVCSLRENNAQLTDCFALVRRGEVWLMNLHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N N P RNRKLLL + EI L R G L+P+K+YF GL K++LA+
Sbjct: 65 APYSHGNLANRDPDRNRKLLLHRNEIRTLQEQTRERGRALIPLKMYFAKNGLVKVELAVC 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKR+ ++RD R+ R L+E +
Sbjct: 125 RGKKLYDKRQDLRRRDAAREVERTLKERS 153
>gi|170699893|ref|ZP_02890923.1| SsrA-binding protein [Burkholderia ambifaria IOP40-10]
gi|170135215|gb|EDT03513.1| SsrA-binding protein [Burkholderia ambifaria IOP40-10]
Length = 148
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIHPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|229175791|ref|ZP_04303297.1| hypothetical protein bcere0006_48670 [Bacillus cereus MM3]
gi|228607742|gb|EEK65058.1| hypothetical protein bcere0006_48670 [Bacillus cereus MM3]
Length = 155
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIEKLTGASKETGYALVPVRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R R+
Sbjct: 126 GKKQYDKRNDLKEKEAKREIARAFRDR 152
>gi|217967733|ref|YP_002353239.1| SsrA-binding protein [Dictyoglomus turgidum DSM 6724]
gi|217336832|gb|ACK42625.1| SsrA-binding protein [Dictyoglomus turgidum DSM 6724]
Length = 153
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 76/143 (53%), Positives = 99/143 (69%), Gaps = 6/143 (4%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + KVV+ NRKAR++Y I+ +FEAGIVLTGTEVKSLR KV++ DSYA +N
Sbjct: 1 MAKEK------KVVAVNRKARHDYSILETFEAGIVLTGTEVKSLRRGKVSLQDSYADVKN 54
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ N +I Y N +NH P+R RKLLL+K EI L VR G+TL+P+ IYFN +
Sbjct: 55 GEVWIYNLHISPYEHGNIYNHDPKRPRKLLLNKDEIAYLVGKVRERGLTLIPLSIYFNER 114
Query: 121 GLAKIDLALAQGKKNYDKRETEK 143
G AK++L LA+GKK YDKR
Sbjct: 115 GWAKVELGLAKGKKLYDKRRDIA 137
>gi|24379987|ref|NP_721942.1| SsrA-binding protein [Streptococcus mutans UA159]
gi|30173275|sp|Q8DSZ5|SSRP_STRMU RecName: Full=SsrA-binding protein
gi|24377974|gb|AAN59248.1|AE014992_3 putative SsrA-binding protein-like protein [Streptococcus mutans
UA159]
Length = 155
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
VV+ N+KAR++Y I+ ++EAGIVLTGTE+KS+R +++ + D +A +N E+WL N
Sbjct: 3 KAQGNVVAQNKKARHDYEILETYEAGIVLTGTEIKSVRAARITLKDGFAQVKNGEVWLNN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ +
Sbjct: 63 VHITPYEQGNIWNQDPDRTRKLLLKKREIAKLDNELKGTGMTLVPLKVYLK-NGFAKVLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GK +YDKRE+ K+R+ DR R +++ N
Sbjct: 122 GLAKGKHDYDKRESIKRREQDRDIKRQMKQFN 153
>gi|313885284|ref|ZP_07819035.1| SsrA-binding protein [Eremococcus coleocola ACS-139-V-Col8]
gi|312619390|gb|EFR30828.1| SsrA-binding protein [Eremococcus coleocola ACS-139-V-Col8]
Length = 154
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS + P ++ NRKAR++Y I+ + EAGI LTGTE+KS+R K+N+ D Y +F
Sbjct: 1 MSQVKKDKP----LASNRKARHDYEILETLEAGIALTGTEIKSVRQGKMNLQDGYISFYG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+ WL ++I Y Q N FNH P R+RKLLL KREI + +R+ G+T VP+K+Y +
Sbjct: 57 GQAWLKAAHISPYEQGNIFNHDPVRDRKLLLHKREILKWDQELRQKGLTAVPLKVYL-VR 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + LA+GK YDKR++ K+ R R +++
Sbjct: 116 GRAKLLIGLARGKNKYDKRQSLKQDQAKRDIDRAMKDR 153
>gi|116748217|ref|YP_844904.1| SsrA-binding protein [Syntrophobacter fumaroxidans MPOB]
gi|187629774|sp|A0LGB7|SSRP_SYNFM RecName: Full=SsrA-binding protein
gi|116697281|gb|ABK16469.1| SsrA-binding protein [Syntrophobacter fumaroxidans MPOB]
Length = 161
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K +++ N+KA ++Y I+ FEAGIVL GTEVKSLR + N+ DSYA
Sbjct: 1 MTKNKPSTAEKTRLICQNKKAYHDYDILEKFEAGIVLLGTEVKSLREGRANLKDSYARVR 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L +I Y A+ NH P R RKLLL EI RL + G+ L+P+K+YF+
Sbjct: 61 KGEVFLQGLHISPYTHASYNNHEPERVRKLLLHAHEIKRLTGKTQERGLALIPLKLYFS- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG K++LALAQGKK YDKRE+ K+++ +R+ R+ +
Sbjct: 120 KGKVKVELALAQGKKLYDKRESIKRKEENRELDRLRKRR 158
>gi|166711478|ref|ZP_02242685.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzicola BLS256]
gi|289663017|ref|ZP_06484598.1| SsrA-binding protein [Xanthomonas campestris pv. vasculorum
NCPPB702]
gi|289670132|ref|ZP_06491207.1| SsrA-binding protein [Xanthomonas campestris pv. musacearum
NCPPB4381]
Length = 167
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K + K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D Y
Sbjct: 1 MSKKPTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP
Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN
Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164
>gi|171318085|ref|ZP_02907254.1| SsrA-binding protein [Burkholderia ambifaria MEX-5]
gi|171096709|gb|EDT41594.1| SsrA-binding protein [Burkholderia ambifaria MEX-5]
Length = 148
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHITPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|85859573|ref|YP_461775.1| SsrA-binding protein [Syntrophus aciditrophicus SB]
gi|123516733|sp|Q2LU46|SSRP_SYNAS RecName: Full=SsrA-binding protein
gi|85722664|gb|ABC77607.1| ssrA-binding protein [Syntrophus aciditrophicus SB]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 99/159 (62%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + P+K++ N+ AR NY I ++EAGIVL GTEVK+LR K N+ DSY ++
Sbjct: 1 MAKKEK---PEKIICQNKTARINYFIEDTYEAGIVLAGTEVKALRDGKGNLKDSYVAVKD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+EI+L +I Y N NH P R RKLL+ KREI RLY R G TL+P+K+YFN
Sbjct: 58 EEIYLYGMHIGPYSHGNISNHEPERVRKLLMHKREIRRLYGKSREKGFTLIPLKVYFN-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ + +GKK YDKRE K ++ R R LR +
Sbjct: 117 SRIKVEIGVGRGKKLYDKREDIKLKEDRRAMERGLRSRS 155
>gi|28210141|ref|NP_781085.1| SsrA-binding protein [Clostridium tetani E88]
gi|39932380|sp|Q898Q7|SSRP_CLOTE RecName: Full=SsrA-binding protein
gi|28202577|gb|AAO35022.1| SsrA-binding protein [Clostridium tetani E88]
Length = 156
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K +++NRKAR++Y + ++EAGI L GTEVKS+R K N+ DSYA N E++L N +
Sbjct: 6 SNKTLAENRKARHDYFVEEAYEAGIELVGTEVKSIREGKANLKDSYAEIRNGEVFLRNMH 65
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ Y Q N FN P R+RKLLL K +I +L A + G TL+P+ +Y G K++LA+
Sbjct: 66 VSPYEQGNIFNKDPLRDRKLLLHKMQILKLTAYTTQQGYTLIPLSLYLK-NGRVKVNLAV 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKKNYDKR+ ++ R R L++ +
Sbjct: 125 AKGKKNYDKRQDLIEKAAKRDIERELKDRS 154
>gi|262395069|ref|YP_003286923.1| tmRNA-binding protein SmpB [Vibrio sp. Ex25]
gi|262338663|gb|ACY52458.1| tmRNA-binding protein SmpB [Vibrio sp. Ex25]
Length = 161
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY
Sbjct: 1 MAKKKTKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANISESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L+ V R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRVNREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKLKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|301154814|emb|CBW14277.1| trans-translation protein [Haemophilus parainfluenzae T3T1]
Length = 160
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++AR+ Y I EAG+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKVKVGSNTIALNKRARHEYFIEDEIEAGLELQGWEVKSMRAGKANISDSYIIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+
Sbjct: 63 YLFGATIQPLSLASTHVVCDPTRTRKLLLNKRELDNLFGKSSRDGFTIVALSLYWKGP-W 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AKI + LA+GKK +DKR+ K+R+W K RI++
Sbjct: 122 AKIKIGLAKGKKQHDKRDDIKEREWKVAKERIMKN 156
>gi|78066778|ref|YP_369547.1| SsrA-binding protein [Burkholderia sp. 383]
gi|123568191|sp|Q39F63|SSRP_BURS3 RecName: Full=SsrA-binding protein
gi|77967523|gb|ABB08903.1| SsrA-binding protein [Burkholderia sp. 383]
Length = 148
Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++DEI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIREGYVVIKHDEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHITPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|193212255|ref|YP_001998208.1| SsrA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085732|gb|ACF11008.1| SsrA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 157
Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +G P NRKAR+ Y I+ + AGI L G+EVKS+R+ K ++++SYA
Sbjct: 1 MAKK-QGKPEYVTAISNRKARFEYEILDTIVAGIELLGSEVKSVRLGKASLNESYAMIHR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N I Y P+R+R+LLL K EI RL + + G+TL+P+K +FN K
Sbjct: 60 GEVWLENMQITPYEHNTLDTLDPKRSRRLLLHKSEILRLQSKISEKGLTLIPLKAFFNPK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ KI+L LA+GKK YDKRET K RD +RQ ++ +++
Sbjct: 120 GILKIELGLARGKKLYDKRETVKNRDAERQLQQLKKQY 157
>gi|145638197|ref|ZP_01793807.1| SsrA-binding protein [Haemophilus influenzae PittII]
gi|145272526|gb|EDK12433.1| SsrA-binding protein [Haemophilus influenzae PittII]
gi|309751353|gb|ADO81337.1| SsrA-binding protein [Haemophilus influenzae R2866]
Length = 161
Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ +
Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELTSLFGKANRDGFTIVALSLYWKS-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKR+ K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156
>gi|229543261|ref|ZP_04432321.1| SsrA-binding protein [Bacillus coagulans 36D1]
gi|229327681|gb|EEN93356.1| SsrA-binding protein [Bacillus coagulans 36D1]
Length = 154
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAGIVL GTE+KS+R +VN+ DS+A EN E+++ +I
Sbjct: 7 KVLAQNKKASHDYFIEETYEAGIVLQGTEIKSIRAGRVNLRDSFARVENGEVFVYGMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RK+LL K+EI RL + G L+P+KIY G AK+ + LA+
Sbjct: 67 PYEQGNRYNHDPLRPRKILLHKKEIDRLAGVTKEKGYALIPLKIYIK-NGYAKVLVGLAR 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKNYDKRE+ KK++ R+ R +
Sbjct: 126 GKKNYDKRESLKKKEAAREIERAFKAR 152
>gi|306835544|ref|ZP_07468558.1| SsrA-binding protein [Corynebacterium accolens ATCC 49726]
gi|304568601|gb|EFM44152.1| SsrA-binding protein [Corynebacterium accolens ATCC 49726]
Length = 180
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
++ NR+AR++Y I+ FE GIVL GTE+KSLR K++++D++AT +N E +L N
Sbjct: 26 SGDATLATNRRARHDYKILEEFECGIVLLGTEIKSLREGKISLNDAFATIDNGEAYLRNL 85
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY + NH PRR RKLLL +REI +LY VR TLVP+K+Y G AK+ LA
Sbjct: 86 HIPEYSMGSWTNHSPRRTRKLLLHRREIDKLYGQVRNGNKTLVPLKVYLK-NGYAKLSLA 144
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LAQGK++YDKRE K+RD +R+ R L
Sbjct: 145 LAQGKQDYDKREDIKRRDQNREITRELGRR 174
>gi|257791712|ref|YP_003182318.1| SsrA-binding protein [Eggerthella lenta DSM 2243]
gi|317487818|ref|ZP_07946411.1| SsrA-binding protein [Eggerthella sp. 1_3_56FAA]
gi|325830631|ref|ZP_08164052.1| SsrA-binding protein [Eggerthella sp. HGA1]
gi|257475609|gb|ACV55929.1| SsrA-binding protein [Eggerthella lenta DSM 2243]
gi|316913093|gb|EFV34609.1| SsrA-binding protein [Eggerthella sp. 1_3_56FAA]
gi|325487377|gb|EGC89819.1| SsrA-binding protein [Eggerthella sp. HGA1]
Length = 155
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 97/152 (63%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+K ++ N+KA + Y I+ + EAGI LTGTEV+SLR + ++D +A + E+WL N
Sbjct: 2 KREEKTIAKNKKAFHEYEILETLEAGIELTGTEVRSLRDNHCQLTDCFALIRDGEVWLHN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+IP YL N N P R RKLLL K++I +L V+ GM LVP+K+YF L K++L
Sbjct: 62 VHIPPYLNGNIANPDPDRKRKLLLHKKQIRQLQEQVKEKGMALVPVKMYFKDNSLVKVEL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+A+GKK YDKR T RD R+ R L+E +
Sbjct: 122 AVARGKKLYDKRATMAARDSRREVERALKERS 153
>gi|91225105|ref|ZP_01260327.1| SsrA-binding protein [Vibrio alginolyticus 12G01]
gi|269965195|ref|ZP_06179329.1| SsrA-binding protein [Vibrio alginolyticus 40B]
gi|91190048|gb|EAS76319.1| SsrA-binding protein [Vibrio alginolyticus 12G01]
gi|269830181|gb|EEZ84408.1| SsrA-binding protein [Vibrio alginolyticus 40B]
Length = 161
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY
Sbjct: 1 MAKKKTKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANISESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L+ V R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRVNREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKLKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|290580033|ref|YP_003484425.1| hypothetical protein SmuNN2025_0507 [Streptococcus mutans NN2025]
gi|254996932|dbj|BAH87533.1| putative SsrA-binding protein homolog [Streptococcus mutans NN2025]
Length = 155
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
VV+ N+KAR++Y I+ ++EAGIVLTGTE+KS+R +++ + D +A +N E+WL N
Sbjct: 3 KAQGNVVAQNKKARHDYEILETYEAGIVLTGTEIKSVRAARITLKDGFAQIKNGEVWLNN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ +
Sbjct: 63 VHITPYEQGNIWNQDPDRTRKLLLKKREIAKLDNELKGTGMTLVPLKVYLK-NGFAKVLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GK +YDKRE+ K+R+ DR R +++ N
Sbjct: 122 GLAKGKHDYDKRESIKRREQDRDIKRQMKQFN 153
>gi|284929621|ref|YP_003422143.1| SsrA-binding protein [cyanobacterium UCYN-A]
gi|284810065|gb|ADB95762.1| SsrA-binding protein [cyanobacterium UCYN-A]
Length = 155
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KV+S+NRKA + Y I+ +EAGI L GTEVKS+R KVN++D YA +N E+W
Sbjct: 2 ENQDKAIKVISNNRKAFFLYEILEKYEAGIELVGTEVKSIRAGKVNLTDGYAFIKNAEVW 61
Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L+N +I Y ++ FNH PRR RKLL+ ++EI++L + + G+TLVP+K+YF L
Sbjct: 62 LSNVHISSYAASSLYFNHDPRRIRKLLMHRKEINQLIGKIEQKGLTLVPLKLYFKGS-LV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KI L L +GKK +DKRET K R R+ RIL+ +
Sbjct: 121 KISLGLGKGKKLHDKRETIKNRQDQREISRILKNN 155
>gi|269468803|gb|EEZ80407.1| tmRNA-binding protein [uncultured SUP05 cluster bacterium]
Length = 161
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 100/149 (67%), Gaps = 2/149 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++ N+KAR++Y I ++ EAG+ L G EVKSLR +KV+I +SY +N+E++L +++
Sbjct: 13 NTIALNKKARHDYFIEQTLEAGLSLEGWEVKSLRDNKVHIKESYVILKNNELFLFGAHVS 72
Query: 72 EYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ N P R RKLLL++ EI+R+ + + G T+VP+K+Y+ +G K+++ +A
Sbjct: 73 PLKSASTHVNADPTRTRKLLLNRLEINRIKDKINQKGATVVPLKLYWT-RGKVKLEIGVA 131
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK++DKR+ K RDW R K R L+E +
Sbjct: 132 KGKKSHDKRQDIKARDWQRDKQRALKESS 160
>gi|293390549|ref|ZP_06634883.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D7S-1]
gi|290951083|gb|EFE01202.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D7S-1]
Length = 160
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I E G+ L G EVKS+R K N+SDSY F+N E
Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEDEIEVGLELQGWEVKSMRAGKANLSDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL +RE+ L+ RDG TL+ + Y+
Sbjct: 63 FLFGAIIQPLSVASTHIVCDPTRTRKLLLKQRELDSLFGKANRDGFTLIALSFYWKG-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKRE K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKREDIKEREWKVAKERIMKN 156
>gi|16272919|ref|NP_439144.1| SsrA-binding protein [Haemophilus influenzae Rd KW20]
gi|68249566|ref|YP_248678.1| SsrA-binding protein [Haemophilus influenzae 86-028NP]
gi|145628082|ref|ZP_01783883.1| SsrA-binding protein [Haemophilus influenzae 22.1-21]
gi|145630074|ref|ZP_01785856.1| SsrA-binding protein [Haemophilus influenzae R3021]
gi|145632366|ref|ZP_01788101.1| SsrA-binding protein [Haemophilus influenzae 3655]
gi|145637285|ref|ZP_01792946.1| SsrA-binding protein [Haemophilus influenzae PittHH]
gi|148826371|ref|YP_001291124.1| SsrA-binding protein [Haemophilus influenzae PittEE]
gi|229846039|ref|ZP_04466151.1| SsrA-binding protein [Haemophilus influenzae 7P49H1]
gi|260580072|ref|ZP_05847902.1| SsrA-binding protein [Haemophilus influenzae RdAW]
gi|260581940|ref|ZP_05849736.1| SsrA-binding protein [Haemophilus influenzae NT127]
gi|319775085|ref|YP_004137573.1| SsrA-binding protein [Haemophilus influenzae F3047]
gi|319897507|ref|YP_004135704.1| ssra-binding protein [Haemophilus influenzae F3031]
gi|329123004|ref|ZP_08251575.1| SsrA-binding protein [Haemophilus aegyptius ATCC 11116]
gi|1173461|sp|P44967|SSRP_HAEIN RecName: Full=SsrA-binding protein
gi|81336005|sp|Q4QLS9|SSRP_HAEI8 RecName: Full=SsrA-binding protein
gi|166223221|sp|A5UD90|SSRP_HAEIE RecName: Full=SsrA-binding protein
gi|1574010|gb|AAC22643.1| small protein B (smpB) [Haemophilus influenzae Rd KW20]
gi|68057765|gb|AAX88018.1| SsrA-binding protein [Haemophilus influenzae 86-028NP]
gi|144979857|gb|EDJ89516.1| SsrA-binding protein [Haemophilus influenzae 22.1-21]
gi|144984355|gb|EDJ91778.1| SsrA-binding protein [Haemophilus influenzae R3021]
gi|144987273|gb|EDJ93803.1| SsrA-binding protein [Haemophilus influenzae 3655]
gi|145269537|gb|EDK09479.1| SsrA-binding protein [Haemophilus influenzae PittHH]
gi|148716531|gb|ABQ98741.1| SsrA-binding protein [Haemophilus influenzae PittEE]
gi|229811043|gb|EEP46760.1| SsrA-binding protein [Haemophilus influenzae 7P49H1]
gi|260093356|gb|EEW77289.1| SsrA-binding protein [Haemophilus influenzae RdAW]
gi|260095133|gb|EEW79025.1| SsrA-binding protein [Haemophilus influenzae NT127]
gi|309973519|gb|ADO96720.1| SsrA-binding protein [Haemophilus influenzae R2846]
gi|317433013|emb|CBY81384.1| SsrA-binding protein [Haemophilus influenzae F3031]
gi|317449676|emb|CBY85882.1| SsrA-binding protein [Haemophilus influenzae F3047]
gi|327471935|gb|EGF17375.1| SsrA-binding protein [Haemophilus aegyptius ATCC 11116]
Length = 161
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ +
Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKS-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKR+ K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156
>gi|239917291|ref|YP_002956849.1| SsrA-binding protein [Micrococcus luteus NCTC 2665]
gi|281414230|ref|ZP_06245972.1| SsrA-binding protein [Micrococcus luteus NCTC 2665]
gi|239838498|gb|ACS30295.1| SsrA-binding protein [Micrococcus luteus NCTC 2665]
Length = 171
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 106/166 (63%), Gaps = 8/166 (4%)
Query: 1 MSLKSRGNPPKK-------VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53
M S+G K+ V+++N+KAR++Y I+ ++EAG+VLTGTEVKSLR K ++ D
Sbjct: 1 MGKNSKGKATKQPAPGERQVIANNKKARHDYTILDTYEAGMVLTGTEVKSLREGKASLVD 60
Query: 54 SYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPM 113
+A F DE+WL YIPEYL + NH RR RKLLL + E+ ++ ++ G+T+VP+
Sbjct: 61 GFAVFYRDELWLEQVYIPEYLNGSWTNHAARRRRKLLLHRAELTKISRQIQDPGLTIVPL 120
Query: 114 KIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+YF G K+++ +A+G + YDKR +++ +R+ R +R N
Sbjct: 121 SLYF-LNGRVKVEIGVARGNREYDKRHKLREQQDNREAQRAMRMRN 165
>gi|310657967|ref|YP_003935688.1| trans-translation protein [Clostridium sticklandii DSM 519]
gi|308824745|emb|CBH20783.1| trans-translation protein [Clostridium sticklandii]
Length = 151
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K V+ NRKAR+NY I+ ++E GI L GTEVKS+R KVN+ + YA+ +N E++L +
Sbjct: 3 GSKTVATNRKARFNYEIIETYEVGIELKGTEVKSIRAGKVNLGEGYASVDNGEVFLKQVH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q N FN P R RKLLL K+EI +L + G +L+P+ +Y +G K+ LAL
Sbjct: 63 ISPYEQGNIFNVDPLRVRKLLLHKQEIRKLIGETTQKGYSLIPLSMYLK-RGKVKVQLAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKKNYDKRE+ K+D R+ R +++
Sbjct: 122 AKGKKNYDKRESLAKKDAQRRMEREIKDR 150
>gi|261252211|ref|ZP_05944784.1| tmRNA-binding protein SmpB [Vibrio orientalis CIP 102891]
gi|260935602|gb|EEX91591.1| tmRNA-binding protein SmpB [Vibrio orientalis CIP 102891]
Length = 161
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLRQGKANIAESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|229087597|ref|ZP_04219727.1| hypothetical protein bcere0022_41610 [Bacillus cereus Rock3-44]
gi|228695713|gb|EEL48568.1| hypothetical protein bcere0022_41610 [Bacillus cereus Rock3-44]
Length = 155
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+K ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKVFHDYFIDETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NRFNH P R RKLLL K+EI +L + G TLVP+KIY G AK+ L
Sbjct: 63 MHISPYEQGNRFNHEPLRTRKLLLHKKEIDKLIGYSKETGYTLVPVKIYLK-NGFAKMAL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKK YDKR K+++ R+ R R+
Sbjct: 122 GVARGKKQYDKRHDLKEKEAKREIARAFRDR 152
>gi|84494438|ref|ZP_00993557.1| SsrA-binding protein [Janibacter sp. HTCC2649]
gi|84383931|gb|EAP99811.1| SsrA-binding protein [Janibacter sp. HTCC2649]
Length = 164
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 67/154 (43%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
+ K + + +K+++ N+KAR++Y I +FEAG+VL GTEVK+LR+ + + D +A+F D
Sbjct: 7 TAKKKEDDGRKLIASNKKARHDYLIEDTFEAGLVLMGTEVKALRMGRATLVDGWASFTGD 66
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E++L +IPEYL + NH PRR RKLLL+++E+ R+ R G T+VP+++YF G
Sbjct: 67 ELFLEGVHIPEYLSGSWTNHTPRRRRKLLLNRKELDRIMHKTRESGHTIVPLQLYFKD-G 125
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
AK+++A+A+GKK YDKR ++R R+ R L
Sbjct: 126 RAKVEIAIAKGKKEYDKRHALRERQDRRETEREL 159
>gi|187631671|sp|A4XYG4|SSRP_PSEMY RecName: Full=SsrA-binding protein
Length = 160
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + P+ ++ N+KA ++Y + + FEAG+ L G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKH--PQGTIALNKKALHDYFVEQKFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DE WL ++I + P R RKLLL KRE+ +L+ AV++ G T V + +Y+
Sbjct: 59 DEAWLMGAHITPLKTASTHVIADPIRTRKLLLHKRELDKLFGAVQQKGYTCVALSLYWKQ 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++ALA+GKK++DKR EK+RD +R+ R +R
Sbjct: 119 H-LVKCEIALAKGKKDFDKRHVEKERDANREVQRAMRSK 156
>gi|313114015|ref|ZP_07799569.1| SsrA-binding protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623635|gb|EFQ07036.1| SsrA-binding protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 160
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ E+ E+ +
Sbjct: 5 KERPATKTIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIEDGELLV 64
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K+
Sbjct: 65 KGMHISPYDHGNMFNQDPMRVRRLLAHKSEIRRLHQQCKLQGYTLVPLSLYFK-HGRVKM 123
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++ L +GKK YDKR +RD R R ++ +
Sbjct: 124 EVGLCKGKKLYDKRADAAQRDAKRSIDRAMKSN 156
>gi|262369412|ref|ZP_06062740.1| ssrA-binding protein [Acinetobacter johnsonii SH046]
gi|262315480|gb|EEY96519.1| ssrA-binding protein [Acinetobacter johnsonii SH046]
Length = 158
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 7/159 (4%)
Query: 1 MSLK---SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++ +S+SY T
Sbjct: 1 MAKATVVKKNTSG--TIAQNKRARHDYFIEEKFEAGLSLQGWEVKSLRAGRMTLSESYIT 58
Query: 58 FENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
F+N E +L + I P + R RKLLL++RE+ +L AV + G + VP+ Y
Sbjct: 59 FKNGEAFLFGAQIQPLLSASTHIVPEATRTRKLLLNRRELDKLLGAVNQKGYSCVPLVAY 118
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ AK+++AL +GK+ +DKR TEK RDW R K RI+
Sbjct: 119 WKGP-RAKLEIALVKGKQLHDKRATEKDRDWQRDKARIM 156
>gi|319779565|ref|YP_004130478.1| tmRNA-binding protein SmpB [Taylorella equigenitalis MCE9]
gi|317109589|gb|ADU92335.1| tmRNA-binding protein SmpB [Taylorella equigenitalis MCE9]
Length = 149
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 98/146 (67%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72
+++N++AR++Y I FEAG+VL G EVK++R KV + D+Y + E++L N ++ P
Sbjct: 3 ITENKRARHDYFIEDKFEAGLVLEGWEVKAIRAGKVQLHDTYVIVRDGELFLLNMHVNPL 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLL+ +REI++L V + G TL+P+ +++ A G K+D LA+G
Sbjct: 63 LSASTHVHPQAYRTRKLLMHRREINKLIGKVEQRGYTLIPLNLHYKA-GKIKLDFGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK++DKR+T K+RDW RQK RI++ +
Sbjct: 122 KKDHDKRDTLKERDWQRQKERIMKTN 147
>gi|312899989|ref|ZP_07759307.1| SsrA-binding protein [Enterococcus faecalis TX0470]
gi|311292985|gb|EFQ71541.1| SsrA-binding protein [Enterococcus faecalis TX0470]
Length = 154
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I
Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ DR+ R L+ +
Sbjct: 126 GKKQYDKREDLKRKEVDREISRTLKNN 152
>gi|56460006|ref|YP_155287.1| SsrA-binding protein [Idiomarina loihiensis L2TR]
gi|61216426|sp|Q5QW47|SSRP_IDILO RecName: Full=SsrA-binding protein
gi|56179016|gb|AAV81738.1| TmRNA-binding protein [Idiomarina loihiensis L2TR]
Length = 159
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + ++ N+KAR+ Y + FEAG+ L G E+KS+R KVNISDSY +N
Sbjct: 1 MSKK-KPQQSSNTIARNKKARHEYFLEDKFEAGVSLQGWEIKSIRAGKVNISDSYVIIKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I Q ++ P R+RKLLL +RE+ +L A R+G ++V IY+
Sbjct: 60 GEAYLLGAEIQPLNQASSHVYCEPDRSRKLLLKRRELDKLIGASEREGYSIVATTIYWKG 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+++ LAQGKK++DKR+T K+RDW RQK RI++
Sbjct: 120 P-WAKLEIFLAQGKKSHDKRDTIKERDWQRQKARIMKH 156
>gi|229592659|ref|YP_002874778.1| SsrA-binding protein [Pseudomonas fluorescens SBW25]
gi|259511427|sp|C3K282|SSRP_PSEFS RecName: Full=SsrA-binding protein
gi|229364525|emb|CAY52382.1| SsrA-binding protein [Pseudomonas fluorescens SBW25]
Length = 160
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR SK+ + DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHRFEAGLVLAGWEVKSLRASKLQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL+ RE+ +L AAV++ G + + Y++
Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLNARELEKLAAAVQQKGYACICLSWYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR+TE++RD +R+ HR +R
Sbjct: 119 H-LVKCEIALGKGKKEYDKRDTERERDSNRELHRAVRNK 156
>gi|298505823|gb|ADI84546.1| SsrA-binding protein [Geobacter sulfurreducens KN400]
Length = 153
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA +++ I FEAG+VL GTEVKSLR K N++DS+A N EI+L N +
Sbjct: 2 GEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLL+ K+EI +L+ +R G ++VP+++YF GLAK++L L
Sbjct: 62 INPYTFGNRENHDPDRLRKLLMHKKEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R+ + LRE +
Sbjct: 121 AKGKKLYDKREDMKKKDQSREMAQALREKS 150
>gi|254787233|ref|YP_003074662.1| SsrA-binding protein [Teredinibacter turnerae T7901]
gi|259511431|sp|C5BQH7|SSRP_TERTT RecName: Full=SsrA-binding protein
gi|237686304|gb|ACR13568.1| SsrA-binding protein [Teredinibacter turnerae T7901]
Length = 158
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + ++ N+KAR++Y I FEAG+ L G EVK+LR K ++DSY F+N E
Sbjct: 1 MAKKKTQNSNTIALNKKARHDYFIEERFEAGVSLAGWEVKALRAGKGQLTDSYVIFKNGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
WL + I Q + F P R RKLLL ++E+ +L A + G T+V +Y+
Sbjct: 61 AWLLGAQIQPLPQASTHFVTDPTRTRKLLLHRKELTKLKEATEQKGHTVVATALYWKHH- 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
L K ++A A+GK+ +DKR+TEK+RDW++QK RIL
Sbjct: 120 LVKCEIATAKGKQLHDKRQTEKERDWNKQKQRIL 153
>gi|28897418|ref|NP_797023.1| SsrA-binding protein [Vibrio parahaemolyticus RIMD 2210633]
gi|153837724|ref|ZP_01990391.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810]
gi|153839538|ref|ZP_01992205.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810]
gi|260363516|ref|ZP_05776345.1| SsrA-binding protein [Vibrio parahaemolyticus K5030]
gi|260876381|ref|ZP_05888736.1| SsrA-binding protein [Vibrio parahaemolyticus AN-5034]
gi|260898652|ref|ZP_05907148.1| SsrA-binding protein [Vibrio parahaemolyticus Peru-466]
gi|260899254|ref|ZP_05907649.1| SsrA-binding protein [Vibrio parahaemolyticus AQ4037]
gi|31077024|sp|Q87RY2|SSRP_VIBPA RecName: Full=SsrA-binding protein
gi|28805630|dbj|BAC58907.1| small protein B [Vibrio parahaemolyticus RIMD 2210633]
gi|149746941|gb|EDM57929.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810]
gi|149748919|gb|EDM59750.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810]
gi|308086968|gb|EFO36663.1| SsrA-binding protein [Vibrio parahaemolyticus Peru-466]
gi|308093050|gb|EFO42745.1| SsrA-binding protein [Vibrio parahaemolyticus AN-5034]
gi|308106596|gb|EFO44136.1| SsrA-binding protein [Vibrio parahaemolyticus AQ4037]
gi|308113001|gb|EFO50541.1| SsrA-binding protein [Vibrio parahaemolyticus K5030]
gi|328472569|gb|EGF43432.1| SsrA-binding protein [Vibrio parahaemolyticus 10329]
Length = 161
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY
Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|288554068|ref|YP_003426003.1| SsrA-binding protein [Bacillus pseudofirmus OF4]
gi|288545228|gb|ADC49111.1| SsrA-binding protein [Bacillus pseudofirmus OF4]
Length = 155
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 108/147 (73%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y I ++EAG+VL GTE+KS+R ++N+ DS+A +N E++L N++I
Sbjct: 7 KVIAQNKKARHDYFIEETYEAGMVLQGTEIKSMRAGRMNLKDSFARIKNGEVYLHNAHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY Q NR+NH P R RKLLL K++I++L ++ G +LVP+K+Y G AKI + LA+
Sbjct: 67 EYEQGNRYNHEPERARKLLLHKKQINQLIGLTKQQGYSLVPLKVYIK-NGYAKILIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKN+DKRET K++D R+ R L++
Sbjct: 126 GKKNFDKRETLKRKDAKREVERALKDR 152
>gi|194015454|ref|ZP_03054070.1| SsrA-binding protein [Bacillus pumilus ATCC 7061]
gi|194012858|gb|EDW22424.1| SsrA-binding protein [Bacillus pumilus ATCC 7061]
Length = 156
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVVS N+KA ++Y I ++EAG+VL GTE+KS+R KVN+ DS+A E E++L N ++
Sbjct: 7 KVVSQNKKANHDYFIEETYEAGLVLQGTEIKSIRAGKVNLKDSFAKIERGEVFLHNMHVS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +++I +L A + +G +LVP+K+Y G AK+ + + +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKQISKLIGATKEEGYSLVPLKLYLK-NGFAKVLIGIGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE KK+D R+ R R+
Sbjct: 126 GKKKYDKREDLKKKDAKREIDRAFRDR 152
>gi|16080413|ref|NP_391240.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221311310|ref|ZP_03593157.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. 168]
gi|221315637|ref|ZP_03597442.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. NCIB
3610]
gi|221320553|ref|ZP_03601847.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. JH642]
gi|221324837|ref|ZP_03606131.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. SMY]
gi|296330420|ref|ZP_06872900.1| SsrA-binding protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305675966|ref|YP_003867638.1| tmRNA-binding protein [Bacillus subtilis subsp. spizizenii str.
W23]
gi|321312910|ref|YP_004205197.1| SsrA-binding protein [Bacillus subtilis BSn5]
gi|3334327|sp|O32230|SSRP_BACSU RecName: Full=SsrA-binding protein
gi|2635873|emb|CAB15365.1| tmRNA-binding protein [Bacillus subtilis subsp. subtilis str. 168]
gi|291485892|dbj|BAI86967.1| SsrA-binding protein [Bacillus subtilis subsp. natto BEST195]
gi|296152423|gb|EFG93292.1| SsrA-binding protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305414210|gb|ADM39329.1| tmRNA-binding protein [Bacillus subtilis subsp. spizizenii str.
W23]
gi|320019184|gb|ADV94170.1| SsrA-binding protein [Bacillus subtilis BSn5]
Length = 156
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV+S N+KA ++Y I ++E GIVL GTE+KS+R +VN+ DS+A E E++L N
Sbjct: 3 KGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFLHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
++ Y Q NR+NH P R RKLL+ ++EI++L + G +LVP+K+Y G AK+ L
Sbjct: 63 MHVSPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLK-NGFAKVLL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L +GKKNYDKRE K++D R+ R R+
Sbjct: 122 GLGKGKKNYDKREDLKRKDAKREIERAFRD 151
>gi|253996335|ref|YP_003048399.1| SsrA-binding protein [Methylotenera mobilis JLW8]
gi|253983014|gb|ACT47872.1| SsrA-binding protein [Methylotenera mobilis JLW8]
Length = 149
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 2/147 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I +EAGIVL G EVK++R +++NI ++Y + E++L ++
Sbjct: 3 IAQNKKAFFDYFIEDKYEAGIVLEGWEVKAIRENRINIKEAYVIIQRGEVYLIGCHVTPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL EI RL V R G TLVP+ ++F+ KG K+ + LA+G
Sbjct: 63 GAASTHIRPDAIRTRKLLLHNEEISRLIGKVERSGYTLVPLDMHFS-KGRVKVQIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK +DKR+TEK +DW+R+K RI+R HN
Sbjct: 122 KKQHDKRDTEKAKDWEREKGRIMRAHN 148
>gi|323340209|ref|ZP_08080473.1| SsrA-binding protein [Lactobacillus ruminis ATCC 25644]
gi|323092400|gb|EFZ35008.1| SsrA-binding protein [Lactobacillus ruminis ATCC 25644]
Length = 156
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + ++ ++ N+KAR++Y+I+ + EAGIVLTGTE+KS+R +V + D +A +NDE
Sbjct: 1 MAGKNSEKQRPLAQNKKARHDYNILETVEAGIVLTGTEIKSVREGRVTLKDGFAQIKNDE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N +I EY NRFNH P R RKLLL K++I +L G+TLVP+K+Y G
Sbjct: 61 AWLENVHISEYTAGNRFNHDPLRRRKLLLHKKQIVQLGQKTSAKGVTLVPLKVYLK-NGF 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + +A GK YDKRET K+RD +R+ R L+
Sbjct: 120 AKVLIGVATGKHEYDKRETIKRRDQEREIQRTLKNF 155
>gi|90962130|ref|YP_536046.1| SsrA-binding protein [Lactobacillus salivarius UCC118]
gi|227891153|ref|ZP_04008958.1| SsrA-binding protein [Lactobacillus salivarius ATCC 11741]
gi|122448779|sp|Q1WSY8|SSRP_LACS1 RecName: Full=SsrA-binding protein
gi|90821324|gb|ABD99963.1| SsrA-binding protein [Lactobacillus salivarius UCC118]
gi|227867027|gb|EEJ74448.1| SsrA-binding protein [Lactobacillus salivarius ATCC 11741]
Length = 155
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/154 (47%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ P ++ NRKAR++Y+I+ ++EAGI LTGTE+KS+R S++N+ D +A +N E+W
Sbjct: 2 AKSKPKDNALAQNRKARHDYNILETYEAGIALTGTEIKSVRASRINLKDGFAQVKNGEVW 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y Q N FNH P RNRKLLL K+EI L ++ G+T+VP+K+Y G AK
Sbjct: 62 LMNVHISLYDQGNIFNHDPLRNRKLLLHKKEIKHLSEETQKKGITIVPLKVYIK-NGFAK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ + +AQGK YDKRET K+RD +R+ R L+ +
Sbjct: 121 VLIGIAQGKHVYDKRETIKRRDQEREIRRTLKNY 154
>gi|297200067|ref|ZP_06917464.1| SsrA-binding protein [Streptomyces sviceus ATCC 29083]
gi|197710540|gb|EDY54574.1| SsrA-binding protein [Streptomyces sviceus ATCC 29083]
Length = 180
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K+V+ N+KAR++Y I+ ++EAGIVLTGTEVKSLR + +++D + + E WL N++I
Sbjct: 27 RKLVAQNKKARHDYAIIDTYEAGIVLTGTEVKSLRQGRTSLADGFVQIDGGEAWLHNAHI 86
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PEY Q + NH RR RKLLL + EI +L + G T+VP+ +YF G AK ++ALA
Sbjct: 87 PEYSQGSWTNHSARRKRKLLLHREEIDKLETKAQETGHTIVPLALYFT-NGRAKAEIALA 145
Query: 131 QGKKNYDKRETEKKRDWDRQKHRIL 155
+GKK YDKR+T +++ R+ R +
Sbjct: 146 RGKKEYDKRQTLREKQDRRESDRAI 170
>gi|301301260|ref|ZP_07207415.1| SsrA-binding protein [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851136|gb|EFK78865.1| SsrA-binding protein [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 155
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/154 (47%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ P ++ NRKAR++Y+I+ ++EAGI LTGTE+KS+R S++N+ D +A +N E+W
Sbjct: 2 AKSKPKDNALAQNRKARHDYNILETYEAGIALTGTEIKSVRASRINLKDGFAQVKNGEVW 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y Q N FNH P RNRKLLL K+EI L ++ G+T+VP+K+Y G AK
Sbjct: 62 LINVHISLYDQGNIFNHDPLRNRKLLLHKKEIKHLSEETQKKGITIVPLKVYIK-NGFAK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ + +AQGK YDKRET K+RD +R+ R L+ +
Sbjct: 121 VLIGIAQGKHVYDKRETIKRRDQEREIRRTLKNY 154
>gi|312963105|ref|ZP_07777590.1| SsrA-binding protein [Pseudomonas fluorescens WH6]
gi|311282616|gb|EFQ61212.1| SsrA-binding protein [Pseudomonas fluorescens WH6]
Length = 160
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR SK+ + DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHRFEAGLVLAGWEVKSLRASKLQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL+ RE+ +L AAV++ G + + Y++
Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLNARELEKLAAAVQQKGYACICLSWYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR+TE++RD +R+ HR +R
Sbjct: 119 H-LVKCEIALGKGKKEYDKRDTERERDSNRELHRAVRNK 156
>gi|254178352|ref|ZP_04885007.1| SsrA-binding protein [Burkholderia mallei ATCC 10399]
gi|160699391|gb|EDP89361.1| SsrA-binding protein [Burkholderia mallei ATCC 10399]
Length = 148
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++ EI+L ++I
Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKHAEIFLIGTHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G
Sbjct: 63 PKASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|311896288|dbj|BAJ28696.1| putative SsrA-binding protein [Kitasatospora setae KM-6054]
Length = 160
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 98/150 (65%), Gaps = 5/150 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KK+V+ N+KAR+ Y I+ ++E G+VLTGTEVKSLR + N+ D YA +
Sbjct: 1 MAK----ETGKKLVAQNKKARHEYTILDTYECGMVLTGTEVKSLREGRANLVDGYAYVQG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E W+ N +IPEY Q NH RR RKLLL K EI ++ + V+ G TLVP+ +YF
Sbjct: 57 GEAWIDNVFIPEYAQGTWTNHSARRKRKLLLHKMEIRKIESKVKETGHTLVPLSLYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQ 150
G AK++LALA GKK YDKR+T ++R R+
Sbjct: 116 GRAKLELALAVGKKLYDKRQTLRERQDRRE 145
>gi|257438394|ref|ZP_05614149.1| SsrA-binding protein [Faecalibacterium prausnitzii A2-165]
gi|257199225|gb|EEU97509.1| SsrA-binding protein [Faecalibacterium prausnitzii A2-165]
Length = 160
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ E+ E+ +
Sbjct: 5 KERPATKTIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIEDGELLV 64
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K+
Sbjct: 65 KGMHITPYDHGNIFNQDPMRVRRLLAHKNEIRRLHQQCKLQGYTLVPLSLYFK-HGRVKM 123
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+L L +GKK YDKR KRD R R ++ +
Sbjct: 124 ELGLCKGKKLYDKRADAAKRDAKRSIDRAVKSN 156
>gi|154687490|ref|YP_001422651.1| SsrA-binding protein [Bacillus amyloliquefaciens FZB42]
gi|308175106|ref|YP_003921811.1| tmRNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|166222358|sp|A7Z8U4|SSRP_BACA2 RecName: Full=SsrA-binding protein
gi|154353341|gb|ABS75420.1| SmpB [Bacillus amyloliquefaciens FZB42]
gi|307607970|emb|CBI44341.1| tmRNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|328555074|gb|AEB25566.1| SsrA-binding protein [Bacillus amyloliquefaciens TA208]
gi|328913430|gb|AEB65026.1| SsrA-binding protein [Bacillus amyloliquefaciens LL3]
Length = 156
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV+S N+KA ++Y I ++E GIVL GTE+KS+R +VN+ DS+A E E++L N
Sbjct: 3 KGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNMKDSFAKIERGEVFLHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NR+NH P R RKLL+ ++EI++L + G +LVP+K+Y G AK+ +
Sbjct: 63 MHISPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLK-NGFAKVLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +GKK YDKRE K++D R+ R R+
Sbjct: 122 GLGKGKKTYDKREDLKRKDAKREIERAFRDR 152
>gi|296169220|ref|ZP_06850873.1| SsrA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896118|gb|EFG75785.1| SsrA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 169
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
+ + G K +V+ NRKAR+NY I+ FEAG+ L GTEVKSLR +++D++AT ++
Sbjct: 8 AKGAGGKRGSKQIVATNRKARHNYSILEEFEAGVALQGTEVKSLRAGHASLTDAFATVDD 67
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N YIPEY + NH PRRNRKLLL +++I RL +R + LVPM +YF+
Sbjct: 68 GEVWLRNLYIPEYRHGSWTNHEPRRNRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE- 126
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GK+ +DKR+ +RD R+ R L
Sbjct: 127 GKVKVELALARGKRAHDKRQDMARRDAQREVVRELGRR 164
>gi|330958072|gb|EGH58332.1| SsrA-binding protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 160
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +I + P R RKLLL++RE+ +L ++V++ G V + +Y+
Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTSSVQQKGYACVALSLYWKQ 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156
>gi|218887960|ref|YP_002437281.1| SsrA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758914|gb|ACL09813.1| SsrA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F']
Length = 153
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K P +++ N+KAR+ Y + EAG+VLTG+EVKSLR VN DSY F N
Sbjct: 1 MSKK----PSPALIAQNKKARHLYELDDFMEAGLVLTGSEVKSLRAGHVNFRDSYVDFRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L +I Y A H P R+RKLLL ++I+ L V + G+T+VP+ ++F+ K
Sbjct: 57 GEAFLVGLHIAPYDNAGYAQHDPDRDRKLLLHAKQINTLALRVAQKGLTVVPVNLHFS-K 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++A+ +GKK +D+RE KKR DR R L
Sbjct: 116 GRVKVEIAVGRGKKLHDQREDLKKRAADRDTERELARF 153
>gi|218779791|ref|YP_002431109.1| SsrA-binding protein [Desulfatibacillum alkenivorans AK-01]
gi|218761175|gb|ACL03641.1| SsrA-binding protein [Desulfatibacillum alkenivorans AK-01]
Length = 159
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ K+V NRKAR++YHI FEAG+VLTGTEVKSLR + N+ DSYA +N E+W
Sbjct: 2 SKRPEHTKLVCQNRKARHDYHIDDRFEAGMVLTGTEVKSLREGRANLKDSYARVKNGELW 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L +I EY A NH P R RKLL+ K+EI RL + G +L+P+++YF+ +G AK
Sbjct: 62 LHQFHISEYPFAYYNNHEPLRIRKLLMHKQEIKRLTGKINERGFSLIPLEVYFS-RGKAK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ LALA+GKK YDKR+ KKR+ R+ RI ++
Sbjct: 121 VTLALARGKKAYDKRQDIKKRESKREMDRIKKDK 154
>gi|310828486|ref|YP_003960843.1| SsrA-binding protein [Eubacterium limosum KIST612]
gi|308740220|gb|ADO37880.1| SsrA-binding protein [Eubacterium limosum KIST612]
Length = 152
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KAR++Y I ++E GIVL GTEVKSLR K ++ +S+A ++ E+++ I
Sbjct: 6 KVIAKNKKARHDYFIEETYECGIVLAGTEVKSLRQGKASLKESHADIKDGEVYVYQMNIT 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N +N P R RKLLL K++I +L +R+G TLVP+ +YF G K++LALA+
Sbjct: 66 PYEHGNIYNKDPLRPRKLLLHKQQIRKLIGLKQREGYTLVPLSLYFK-NGRVKLELALAK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK YDKR T +RD +R+ + LR
Sbjct: 125 GKKLYDKRHTIAERDANRRIQKNLRH 150
>gi|297538332|ref|YP_003674101.1| SsrA-binding protein [Methylotenera sp. 301]
gi|297257679|gb|ADI29524.1| SsrA-binding protein [Methylotenera sp. 301]
Length = 149
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I +EAG+VL G EVK++R ++VNI ++Y + EI++ ++
Sbjct: 3 IAQNKKAFFDYFIEDKYEAGVVLEGWEVKAIRENRVNIKEAYVIIQRGEIYIIGCHVTPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL EI +L A V R G T+VP+ ++F+ KG K+ + LA+G
Sbjct: 63 GAASTHIRPDAIRTRKLLLHSEEILKLIAKVERAGYTIVPLDMHFS-KGRVKVQIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK +DKR+TEK+RDW+R+K RI+R HN
Sbjct: 122 KKQHDKRDTEKERDWEREKGRIMRAHN 148
>gi|166032818|ref|ZP_02235647.1| hypothetical protein DORFOR_02534 [Dorea formicigenerans ATCC
27755]
gi|166027175|gb|EDR45932.1| hypothetical protein DORFOR_02534 [Dorea formicigenerans ATCC
27755]
Length = 155
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ ++EAGIVL GTEVKSLR+ K +I +S+ EN E+++
Sbjct: 3 KTNGKMIANNKKAYHDYFILDTYEAGIVLHGTEVKSLRMGKCSIKESFIRIENGEVFIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R +KL+L K EI++L + GM +VP+K+YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRVKKLMLHKTEINKLIGKTKEKGMAIVPLKVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR+ K+D R+ R + N
Sbjct: 122 GLAKGKKLYDKRQDIAKKDQQREASRDFKIRN 153
>gi|157693782|ref|YP_001488244.1| SsrA-binding protein [Bacillus pumilus SAFR-032]
gi|166979667|sp|A8FHG7|SSRP_BACP2 RecName: Full=SsrA-binding protein
gi|157682540|gb|ABV63684.1| tmRNA-binding protein [Bacillus pumilus SAFR-032]
Length = 156
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVVS N+KA ++Y I ++EAG+VL GTE+KS+R KVN+ DS+A E E++L N ++
Sbjct: 7 KVVSQNKKANHDYFIEETYEAGLVLQGTEIKSIRAGKVNLKDSFAKIERGEVFLHNMHVS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +++I +L A + +G +LVP+K+Y G AK+ + + +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKQISKLIGATKEEGYSLVPLKLYLK-NGFAKVLIGIGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE KK+D R+ R R+
Sbjct: 126 GKKKYDKREDLKKKDAKREIERAFRDR 152
>gi|297618002|ref|YP_003703161.1| SsrA-binding protein [Syntrophothermus lipocalidus DSM 12680]
gi|297145839|gb|ADI02596.1| SsrA-binding protein [Syntrophothermus lipocalidus DSM 12680]
Length = 152
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 78/152 (51%), Positives = 105/152 (69%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KVV +NRKAR+NYHI ++EAG+ L GTEVKSLR K NI D+YA ++ E+W+
Sbjct: 2 SKEGYKVVIENRKARHNYHIEETYEAGLCLVGTEVKSLREGKGNIQDAYAEVKDGEVWVN 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + NRFNH P+R +KLLL +REI+RLY V++ G TLVP++IYF G AK+
Sbjct: 62 NFHISPYEKGNRFNHEPKRPKKLLLHRREINRLYGLVQKKGYTLVPLRIYFKD-GKAKMA 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+A+GKK +DKRE RD R+ R ++
Sbjct: 121 LAVARGKKMHDKREDMVARDVKREIERAMKAK 152
>gi|329113443|ref|ZP_08242224.1| SsrA-binding protein [Acetobacter pomorum DM001]
gi|326697268|gb|EGE48928.1| SsrA-binding protein [Acetobacter pomorum DM001]
Length = 168
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 96/145 (66%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NRKAR+NY+I+ + EAG+VL G EVKSLR+ + I++++A + +WL NSYIPEY
Sbjct: 19 VAQNRKARFNYNILETIEAGLVLRGAEVKSLRLGRATINEAFAGERDGSLWLFNSYIPEY 78
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
R RKLL+ ++E+ + A+ + G TLVP+ ++FN +GLAK+ L L GK
Sbjct: 79 QGGVLSRFDTRAPRKLLMHRKEMRKFIGAIAKQGATLVPLNVHFNERGLAKVTLGLGVGK 138
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
K +DKR++ RDW R K R++R
Sbjct: 139 KTHDKRQSIADRDWQRDKARLIRNK 163
>gi|116494483|ref|YP_806217.1| SsrA-binding protein [Lactobacillus casei ATCC 334]
gi|191637917|ref|YP_001987083.1| SsrA-binding protein [Lactobacillus casei BL23]
gi|227535549|ref|ZP_03965598.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|301065993|ref|YP_003788016.1| tmRNA-binding protein [Lactobacillus casei str. Zhang]
gi|122264091|sp|Q03AJ7|SSRP_LACC3 RecName: Full=SsrA-binding protein
gi|238693027|sp|B3WCX4|SSRP_LACCB RecName: Full=SsrA-binding protein
gi|116104633|gb|ABJ69775.1| SsrA-binding protein [Lactobacillus casei ATCC 334]
gi|145309095|gb|ABP57771.1| SsrA RNA binding protein [Lactobacillus casei BL23]
gi|190712219|emb|CAQ66225.1| SsrA-binding protein [Lactobacillus casei BL23]
gi|227186796|gb|EEI66863.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|300438400|gb|ADK18166.1| tmRNA-binding protein [Lactobacillus casei str. Zhang]
gi|327381985|gb|AEA53461.1| SsrA-binding protein [Lactobacillus casei LC2W]
gi|327385144|gb|AEA56618.1| SsrA-binding protein [Lactobacillus casei BD-II]
Length = 157
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N
Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL N +I Y + N FN P RNRKLLL KREI +L R G+TLVP+++Y
Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKREIRKLGQMTARQGVTLVPLRMYLK-H 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GK NYDKRET K++D +R+ R L+
Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 156
>gi|258542279|ref|YP_003187712.1| SsrA-binding protein [Acetobacter pasteurianus IFO 3283-01]
gi|256633357|dbj|BAH99332.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-01]
gi|256636416|dbj|BAI02385.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-03]
gi|256639469|dbj|BAI05431.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-07]
gi|256642525|dbj|BAI08480.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-22]
gi|256645580|dbj|BAI11528.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-26]
gi|256648633|dbj|BAI14574.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-32]
gi|256651686|dbj|BAI17620.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654677|dbj|BAI20604.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO
3283-12]
Length = 168
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 97/145 (66%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NRKAR+NY+I+ + EAG+VL G EVKSLR+ + I++++A + +WL NSYIPEY
Sbjct: 19 VAQNRKARFNYNILETIEAGLVLKGAEVKSLRLGRATINEAFAGERDGALWLFNSYIPEY 78
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
R RKLL+ ++E+ + A+ + G TLVP+ ++FN +GLAK+ L L GK
Sbjct: 79 QGGVLSRFDTRAPRKLLMHRKEMRKFIGAIAKQGATLVPLNVHFNDRGLAKVTLGLGVGK 138
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
K++DKR++ RDW R K R++R
Sbjct: 139 KSHDKRQSIADRDWQRDKARLIRNK 163
>gi|239941651|ref|ZP_04693588.1| SsrA-binding protein [Streptomyces roseosporus NRRL 15998]
Length = 152
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 58/137 (42%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KAR++Y I+ ++E G+VL GTEVKSLR+ + ++ D + ++ E WL N ++PEY
Sbjct: 2 IAQNKKARHDYTILDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDDHEAWLHNIHVPEY 61
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+Q NH +R RKLLL + EI +L + + G T+VP+ +YF G K+++ALA+GK
Sbjct: 62 VQGTWTNHAAKRKRKLLLHRAEIDKLESKSQETGHTIVPLALYFKD-GRVKVEIALAKGK 120
Query: 134 KNYDKRETEKKRDWDRQ 150
K YDKR+T +++ R+
Sbjct: 121 KEYDKRQTLREKQDTRE 137
>gi|238021690|ref|ZP_04602116.1| hypothetical protein GCWU000324_01593 [Kingella oralis ATCC 51147]
gi|237866304|gb|EEP67346.1| hypothetical protein GCWU000324_01593 [Kingella oralis ATCC 51147]
Length = 148
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKA ++Y I EAG+VL G EVK++R +V + +SY ++ D +L +I
Sbjct: 3 IANNRKAFHDYFIEEQIEAGLVLEGWEVKAIRAGRVQLKESYIYWKRDAFYLVGCHITPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL++REI++L R G T+VP+ ++F +G K ++ LA+G
Sbjct: 63 PTASTHVKPDPVRPRKLLLNQREINKLIGKTERAGYTIVPLNLHF-LRGRIKAEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRE+ K+ DW R+K R++++
Sbjct: 122 KKLHDKRESSKEADWKREKQRLMKQ 146
>gi|224369005|ref|YP_002603169.1| SmpB [Desulfobacterium autotrophicum HRM2]
gi|223691722|gb|ACN15005.1| SmpB [Desulfobacterium autotrophicum HRM2]
Length = 154
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ K+++ N+KAR++YH+ EAGIVLTGTEVKS+R +V I D+YA +N E++L
Sbjct: 2 TSEHIKIIATNKKARHDYHLSDEVEAGIVLTGTEVKSIRDGRVTIKDAYAEIKNGEVFLR 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y A NH P R+RKLLL EI R+ + G T++P+K+YF G K+
Sbjct: 62 QLHINPYAFAYYDNHDPLRSRKLLLHNYEIKRMIIKTKERGYTIIPLKLYFK-NGKVKVQ 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ALA+GKK YDKRE+ K+R+ +R+ R+ +++
Sbjct: 121 IALAKGKKLYDKRESIKEREVNRELDRVKKKY 152
>gi|210618047|ref|ZP_03291882.1| hypothetical protein CLONEX_04115 [Clostridium nexile DSM 1787]
gi|210149040|gb|EEA80049.1| hypothetical protein CLONEX_04115 [Clostridium nexile DSM 1787]
Length = 155
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +++ EN+E+++
Sbjct: 3 KEQGKLIANNKKAYHDYFILDTYEAGISLHGTEVKSLRMGKCSIKEAFIRIENEEVFVYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL + EI+++ ++ GM LVP+K+YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHRSEINKITGKIKEKGMALVPLKVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR K+D R+ R + N
Sbjct: 122 GLAKGKKLYDKRNDIAKKDQQREAQRDFKIRN 153
>gi|167772012|ref|ZP_02444065.1| hypothetical protein ANACOL_03386 [Anaerotruncus colihominis DSM
17241]
gi|167665810|gb|EDS09940.1| hypothetical protein ANACOL_03386 [Anaerotruncus colihominis DSM
17241]
Length = 155
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K +S N+KAR++Y + SFEAGI L GTEVKSLR + N+ DS+ E+++ +I
Sbjct: 7 KTISVNKKARHDYFVEESFEAGIELFGTEVKSLRKNACNLKDSWCDITGGELFIKQMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FN P R R+LL+ +REI++L + + G TL+P+ +YF K+ L L +
Sbjct: 67 PYEQGNIFNKDPYRPRRLLMHRREINKLMGLIAQQGYTLIPLSLYFKGS-RVKVQLGLCK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR+ +R R R LR+
Sbjct: 126 GKKLYDKRDDMARRAAQRDIDRALRDR 152
>gi|212640317|ref|YP_002316837.1| SsrA-binding protein [Anoxybacillus flavithermus WK1]
gi|226734243|sp|B7GLX3|SSRP_ANOFW RecName: Full=SsrA-binding protein
gi|212561797|gb|ACJ34852.1| tmRNA-binding protein [Anoxybacillus flavithermus WK1]
Length = 154
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I ++EAG+VL GTE+KS+R KVN+ DS+A E E++L N +I
Sbjct: 7 KLIAQNKKAHHDYFIEETYEAGLVLQGTEIKSIRAGKVNLKDSFAKVEKGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI +L + G TLVP+K+Y G AK+ L + +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREISKLIGYTKEQGYTLVPLKLYIK-NGFAKLLLGVGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE KK++ R+ R RE
Sbjct: 126 GKKKYDKREDMKKKEAQREVERAFRER 152
>gi|253580865|ref|ZP_04858128.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847935|gb|EES75902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 160
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 102/159 (64%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K++++N+KA ++Y I ++EAGI L GTEVKSLR+ K +I +S+ EN
Sbjct: 5 MAKKK----GMKLIANNKKAFHDYFIEDTYEAGIALAGTEVKSLRMGKCSIKESFIRVEN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLLL + EI+++ A ++ G+TLVP+K+YF
Sbjct: 61 GEVYIYGMHISPYEKGNIFNKDPLRIRKLLLHRYEINKIEAKLKEKGLTLVPLKVYFKDS 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ +A+GKK YDKR+ K+D R+ R + N
Sbjct: 121 -LVKVEIGMARGKKLYDKRQDIAKKDQRREAEREFKVKN 158
>gi|291557152|emb|CBL34269.1| SsrA-binding protein [Eubacterium siraeum V10Sc8a]
Length = 154
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K ++DNRKAR++Y I+ S+EAGI LTGTEVKS+R +N+ DS+ + ++ E+++
Sbjct: 3 KTALKTIADNRKARHDYFILESYEAGIELTGTEVKSIRDGGLNLKDSWISIDDGELFIKQ 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLL+ KREI +L V++DG+TL+P+ +YF K+ +
Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLMHKREIMKLLGQVKQDGLTLIPISVYFKGS-RVKVQV 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L +GKK +DKR+ +RD R R L+ N
Sbjct: 122 GLCKGKKQHDKRDAMAQRDAKRTIDRELKMRN 153
>gi|39996809|ref|NP_952760.1| SsrA-binding protein [Geobacter sulfurreducens PCA]
gi|61216577|sp|Q74CG4|SSRP_GEOSL RecName: Full=SsrA-binding protein
gi|39983697|gb|AAR35087.1| SsrA-binding protein [Geobacter sulfurreducens PCA]
Length = 153
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA +++ I FEAG+VL GTEVKSLR K N++DS+A N EI+L N +
Sbjct: 2 GEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLL+ K+EI +L+ +R G ++VP+++YF GLAK++L L
Sbjct: 62 INPYAFGNRENHDPDRLRKLLMHKKEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R+ + LRE +
Sbjct: 121 AKGKKLYDKREDMKKKDQSREMAQALREKS 150
>gi|288958237|ref|YP_003448578.1| SsrA-binding protein [Azospirillum sp. B510]
gi|288910545|dbj|BAI72034.1| SsrA-binding protein [Azospirillum sp. B510]
Length = 157
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 73/149 (48%), Positives = 112/149 (75%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK + NR+AR+++ I EAGI+LTG+EVKSLR + +++++YA + E++L N+YI
Sbjct: 8 KKYAAQNRRARFDFFIDDVLEAGIMLTGSEVKSLRGGRASVNEAYAGLKGGELFLFNAYI 67
Query: 71 PEYLQANRFNHY-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
PEYLQA R + + P+R RKLL+ +RE+ +L A +++ G+TLVPM +YFN +G AK+++ L
Sbjct: 68 PEYLQAGRVDQHEPKRPRKLLVRRRELDKLAAGIKQKGVTLVPMSVYFNDRGYAKVEIGL 127
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A GKK +DKRE+EK+R W R K R++R+
Sbjct: 128 ATGKKKHDKRESEKERSWQRDKARLMRDK 156
>gi|255323772|ref|ZP_05364898.1| SsrA-binding protein [Corynebacterium tuberculostearicum SK141]
gi|311739765|ref|ZP_07713599.1| SsrA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
gi|255298952|gb|EET78243.1| SsrA-binding protein [Corynebacterium tuberculostearicum SK141]
gi|311304838|gb|EFQ80907.1| SsrA-binding protein [Corynebacterium pseudogenitalium ATCC 33035]
Length = 167
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+ ++ NR+AR++Y I+ +E GIVL GTE+KSLR K++++D++AT ++ E++L N
Sbjct: 13 SGEATLATNRRARHDYKILEEYECGIVLLGTEIKSLREGKISLNDAFATIDDGEVYLRNL 72
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY + NH PRR RKLLL +REI +LY VR TLVP+K+Y G AK+ LA
Sbjct: 73 HIPEYSMGSWTNHSPRRTRKLLLHRREIDKLYGQVRNGNKTLVPLKVYLK-NGYAKLSLA 131
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LAQGK++YDKRE K+RD DR+ R L
Sbjct: 132 LAQGKQDYDKREDIKRRDQDREISRELGRR 161
>gi|29377101|ref|NP_816255.1| SsrA-binding protein [Enterococcus faecalis V583]
gi|227519699|ref|ZP_03949748.1| SsrA-binding protein [Enterococcus faecalis TX0104]
gi|227554111|ref|ZP_03984158.1| SsrA-binding protein [Enterococcus faecalis HH22]
gi|229545016|ref|ZP_04433741.1| SsrA-binding protein [Enterococcus faecalis TX1322]
gi|229549260|ref|ZP_04437985.1| SsrA-binding protein [Enterococcus faecalis ATCC 29200]
gi|255971973|ref|ZP_05422559.1| SsrA-binding protein [Enterococcus faecalis T1]
gi|255975030|ref|ZP_05425616.1| SsrA-binding protein [Enterococcus faecalis T2]
gi|256616872|ref|ZP_05473718.1| SsrA-binding protein [Enterococcus faecalis ATCC 4200]
gi|256763253|ref|ZP_05503833.1| SsrA-binding protein [Enterococcus faecalis T3]
gi|256853926|ref|ZP_05559291.1| SsrA-binding protein [Enterococcus faecalis T8]
gi|256957854|ref|ZP_05562025.1| SsrA-binding protein [Enterococcus faecalis DS5]
gi|256963734|ref|ZP_05567905.1| SsrA-binding protein [Enterococcus faecalis HIP11704]
gi|257079792|ref|ZP_05574153.1| SsrA-binding protein [Enterococcus faecalis JH1]
gi|257081862|ref|ZP_05576223.1| SsrA-binding protein [Enterococcus faecalis E1Sol]
gi|257084404|ref|ZP_05578765.1| SsrA-binding protein [Enterococcus faecalis Fly1]
gi|257087597|ref|ZP_05581958.1| SsrA-binding protein [Enterococcus faecalis D6]
gi|257090756|ref|ZP_05585117.1| SsrA-binding protein [Enterococcus faecalis CH188]
gi|257416804|ref|ZP_05593798.1| SsrA-binding protein [Enterococcus faecalis AR01/DG]
gi|257420020|ref|ZP_05597014.1| SsrA-binding protein [Enterococcus faecalis T11]
gi|257421801|ref|ZP_05598791.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|294781385|ref|ZP_06746727.1| SsrA-binding protein [Enterococcus faecalis PC1.1]
gi|300860846|ref|ZP_07106933.1| SsrA-binding protein [Enterococcus faecalis TUSoD Ef11]
gi|307270669|ref|ZP_07551960.1| SsrA-binding protein [Enterococcus faecalis TX4248]
gi|307271681|ref|ZP_07552952.1| SsrA-binding protein [Enterococcus faecalis TX0855]
gi|307276863|ref|ZP_07557974.1| SsrA-binding protein [Enterococcus faecalis TX2134]
gi|307285539|ref|ZP_07565678.1| SsrA-binding protein [Enterococcus faecalis TX0860]
gi|307287560|ref|ZP_07567603.1| SsrA-binding protein [Enterococcus faecalis TX0109]
gi|312902386|ref|ZP_07761592.1| SsrA-binding protein [Enterococcus faecalis TX0635]
gi|312953646|ref|ZP_07772483.1| SsrA-binding protein [Enterococcus faecalis TX0102]
gi|30248029|sp|P59630|SSRP_ENTFA RecName: Full=SsrA-binding protein
gi|29344567|gb|AAO82325.1| SsrA-binding protein [Enterococcus faecalis V583]
gi|227072787|gb|EEI10750.1| SsrA-binding protein [Enterococcus faecalis TX0104]
gi|227176737|gb|EEI57709.1| SsrA-binding protein [Enterococcus faecalis HH22]
gi|229305497|gb|EEN71493.1| SsrA-binding protein [Enterococcus faecalis ATCC 29200]
gi|229309908|gb|EEN75895.1| SsrA-binding protein [Enterococcus faecalis TX1322]
gi|255962991|gb|EET95467.1| SsrA-binding protein [Enterococcus faecalis T1]
gi|255967902|gb|EET98524.1| SsrA-binding protein [Enterococcus faecalis T2]
gi|256596399|gb|EEU15575.1| SsrA-binding protein [Enterococcus faecalis ATCC 4200]
gi|256684504|gb|EEU24199.1| SsrA-binding protein [Enterococcus faecalis T3]
gi|256710869|gb|EEU25912.1| SsrA-binding protein [Enterococcus faecalis T8]
gi|256948350|gb|EEU64982.1| SsrA-binding protein [Enterococcus faecalis DS5]
gi|256954230|gb|EEU70862.1| SsrA-binding protein [Enterococcus faecalis HIP11704]
gi|256987822|gb|EEU75124.1| SsrA-binding protein [Enterococcus faecalis JH1]
gi|256989892|gb|EEU77194.1| SsrA-binding protein [Enterococcus faecalis E1Sol]
gi|256992434|gb|EEU79736.1| SsrA-binding protein [Enterococcus faecalis Fly1]
gi|256995627|gb|EEU82929.1| SsrA-binding protein [Enterococcus faecalis D6]
gi|256999568|gb|EEU86088.1| SsrA-binding protein [Enterococcus faecalis CH188]
gi|257158632|gb|EEU88592.1| SsrA-binding protein [Enterococcus faecalis ARO1/DG]
gi|257161848|gb|EEU91808.1| SsrA-binding protein [Enterococcus faecalis T11]
gi|257163625|gb|EEU93585.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|294451512|gb|EFG19972.1| SsrA-binding protein [Enterococcus faecalis PC1.1]
gi|295113593|emb|CBL32230.1| SsrA-binding protein [Enterococcus sp. 7L76]
gi|300849885|gb|EFK77635.1| SsrA-binding protein [Enterococcus faecalis TUSoD Ef11]
gi|306501298|gb|EFM70601.1| SsrA-binding protein [Enterococcus faecalis TX0109]
gi|306502763|gb|EFM72028.1| SsrA-binding protein [Enterococcus faecalis TX0860]
gi|306506500|gb|EFM75659.1| SsrA-binding protein [Enterococcus faecalis TX2134]
gi|306511559|gb|EFM80558.1| SsrA-binding protein [Enterococcus faecalis TX0855]
gi|306512979|gb|EFM81620.1| SsrA-binding protein [Enterococcus faecalis TX4248]
gi|310628484|gb|EFQ11767.1| SsrA-binding protein [Enterococcus faecalis TX0102]
gi|310634056|gb|EFQ17339.1| SsrA-binding protein [Enterococcus faecalis TX0635]
gi|315025245|gb|EFT37177.1| SsrA-binding protein [Enterococcus faecalis TX2137]
gi|315030328|gb|EFT42260.1| SsrA-binding protein [Enterococcus faecalis TX4000]
gi|315032748|gb|EFT44680.1| SsrA-binding protein [Enterococcus faecalis TX0017]
gi|315035794|gb|EFT47726.1| SsrA-binding protein [Enterococcus faecalis TX0027]
gi|315143753|gb|EFT87769.1| SsrA-binding protein [Enterococcus faecalis TX2141]
gi|315148590|gb|EFT92606.1| SsrA-binding protein [Enterococcus faecalis TX4244]
gi|315151913|gb|EFT95929.1| SsrA-binding protein [Enterococcus faecalis TX0031]
gi|315155497|gb|EFT99513.1| SsrA-binding protein [Enterococcus faecalis TX0043]
gi|315159206|gb|EFU03223.1| SsrA-binding protein [Enterococcus faecalis TX0312]
gi|315162855|gb|EFU06872.1| SsrA-binding protein [Enterococcus faecalis TX0645]
gi|315164957|gb|EFU08974.1| SsrA-binding protein [Enterococcus faecalis TX1302]
gi|315168606|gb|EFU12623.1| SsrA-binding protein [Enterococcus faecalis TX1341]
gi|315170135|gb|EFU14152.1| SsrA-binding protein [Enterococcus faecalis TX1342]
gi|315173366|gb|EFU17383.1| SsrA-binding protein [Enterococcus faecalis TX1346]
gi|315576219|gb|EFU88410.1| SsrA-binding protein [Enterococcus faecalis TX0309B]
gi|315579204|gb|EFU91395.1| SsrA-binding protein [Enterococcus faecalis TX0630]
gi|315582935|gb|EFU95126.1| SsrA-binding protein [Enterococcus faecalis TX0309A]
gi|323481551|gb|ADX80990.1| ssrA-binding protein [Enterococcus faecalis 62]
gi|327535846|gb|AEA94680.1| SsrA-binding protein [Enterococcus faecalis OG1RF]
gi|329578101|gb|EGG59513.1| SsrA-binding protein [Enterococcus faecalis TX1467]
Length = 154
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I
Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ DRQ R L+ +
Sbjct: 126 GKKQYDKREDLKRKEVDRQISRTLKNN 152
>gi|257897966|ref|ZP_05677619.1| SmpB protein [Enterococcus faecium Com15]
gi|257835878|gb|EEV60952.1| SmpB protein [Enterococcus faecium Com15]
Length = 159
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N
Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y
Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITIVPLKVYIR-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+ + LA+GKK+YDKRE K++D DRQ R L+ +
Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158
>gi|328882771|emb|CCA56010.1| tmRNA-binding protein SmpB [Streptomyces venezuelae ATCC 10712]
Length = 179
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 104/150 (69%), Gaps = 2/150 (1%)
Query: 2 SLKSRGN-PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
+ K++ P +K+++ N+KAR++YHI+ ++E G+VL GTEVKSLR+ + ++ D + +N
Sbjct: 13 AKKNQDKAPERKMIAQNKKARHDYHIIDTYECGVVLMGTEVKSLRMGRASLVDGFVQIDN 72
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL + ++PEY+Q + NH +R RKLLL + EI +L A + G T+VP+ +YF
Sbjct: 73 HEAWLHSIHVPEYMQGSWTNHSAKRKRKLLLHREEIDKLEAKSQETGHTIVPLALYF-LN 131
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQ 150
G K+++ALA+GKK +DKR+T +++ R+
Sbjct: 132 GRVKVEIALAKGKKEFDKRQTLREKQDTRE 161
>gi|296134179|ref|YP_003641426.1| SsrA-binding protein [Thermincola sp. JR]
gi|296032757|gb|ADG83525.1| SsrA-binding protein [Thermincola potens JR]
Length = 153
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
+NRKAR++YHI +EAGI L GTEVKSLR K N+ DS+A N E+++ N +I Y
Sbjct: 7 IENRKARHDYHIEEVYEAGIELKGTEVKSLRAGKANLKDSFALVRNGEVFVHNMHISPYE 66
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
Q NRFNH P R RKLLL + EI++L A ++ G+TLVP+KIYF G AK+ LALA+GKK
Sbjct: 67 QGNRFNHEPTRVRKLLLHRHEINKLIGATKQKGLTLVPLKIYFK-NGRAKMALALARGKK 125
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKR+ RD R+ + RE
Sbjct: 126 LYDKRDDMAARDAKREIEKAFRER 149
>gi|218708663|ref|YP_002416284.1| SsrA-binding protein [Vibrio splendidus LGP32]
gi|218321682|emb|CAV17636.1| SsrA-binding protein [Vibrio splendidus LGP32]
Length = 184
Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 24 MAKNKSKSKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLREGKTNIAESYVYIR 83
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S++E+ L + R+GMTLV +Y++
Sbjct: 84 DGEAFISGMTITPLTQASTHIVANPTRIRKLLMSRKELDNLIGRINREGMTLVATALYWS 143
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ AKI + +A+GKK +DKR K++DW R K RI++ +
Sbjct: 144 -RSWAKIKVGVAKGKKLHDKRTDMKEKDWARDKARIMKSN 182
>gi|284046030|ref|YP_003396370.1| SsrA-binding protein [Conexibacter woesei DSM 14684]
gi|283950251|gb|ADB52995.1| SsrA-binding protein [Conexibacter woesei DSM 14684]
Length = 160
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 1/145 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NR+AR+ + ++ +FEAG+VLTGTEVKSLR + D+YA E+WL N +IP Y
Sbjct: 15 VATNRQARFRFRLLDTFEAGMVLTGTEVKSLREGGAQMKDAYALVRGGEVWLVNMHIPPY 74
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
A R NH P R+RKLLL +REI RL R G+TLVP +IYF AK ++ALAQGK
Sbjct: 75 ASAYRDNHLPERDRKLLLHRREIERLVGKTRERGLTLVPTRIYFRG-ARAKCEIALAQGK 133
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
+DKR++ K R+ R+ R RE+
Sbjct: 134 DQFDKRQSIKSREQAREMQRATREY 158
>gi|331082269|ref|ZP_08331396.1| SsrA-binding protein [Lachnospiraceae bacterium 6_1_63FAA]
gi|330403063|gb|EGG82628.1| SsrA-binding protein [Lachnospiraceae bacterium 6_1_63FAA]
Length = 156
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS +++++N+KA ++Y I ++EAGI L GTEVKSLR+ K +I +S+ +
Sbjct: 1 MAKKSEN----RLIANNKKAYHDYFIEDTYEAGIALAGTEVKSLRMGKCSIKESFIQIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLLL EI ++ +R G TLVP+K+YF
Sbjct: 57 GEVFIFGMHISPYEKGNIFNKDPLRVRKLLLHSYEIRKIEGKIREKGYTLVPLKVYFKGS 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ +A+GKK YDKR+ K+D R+ R + N
Sbjct: 117 -LVKVEMGVAKGKKLYDKRQDIAKKDQRRETEREFKVKN 154
>gi|311743773|ref|ZP_07717579.1| SsrA-binding protein [Aeromicrobium marinum DSM 15272]
gi|311312903|gb|EFQ82814.1| SsrA-binding protein [Aeromicrobium marinum DSM 15272]
Length = 157
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 9/160 (5%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS +++V+ NRKAR++YHI +FEAG+VLTGTEVKSLR + ++ D + +
Sbjct: 1 MSK----ETGRQLVAQNRKARHDYHIEDTFEAGLVLTGTEVKSLRAGRASLVDGFGEIDR 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +IP Y Q NH RR RKLLL++ EI ++ G+T++P+ +YF
Sbjct: 57 GEAWLLQVHIPHYSQGTWTNHETRRRRKLLLNRVEIDKIERRTSEKGLTIIPLSLYFKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKR----DWDRQKHRILR 156
G AK+++ALA+GKK YDKR +R + R+ R ++
Sbjct: 116 GRAKVEIALARGKKEYDKRHAIAERTARNEATRELGRRMK 155
>gi|299143289|ref|ZP_07036369.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298517774|gb|EFI41513.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 156
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ NRKAR++Y I + E GI L GTEVKSLR K NISD+YA +N E
Sbjct: 1 MMKMAKSVDNALATNRKARHDYFIEDTIETGIELRGTEVKSLRKGKANISDAYAEIKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+++ N +I Y Q N FN P R RKLLL K EI RL G TL+P+K+Y N +G
Sbjct: 61 VFVENMHISPYEQGNIFNVDPLRVRKLLLHKSEIRRLERDTTLKGYTLIPLKLYLN-RGR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LA+A+GKK YDKRET K+D R+ + ++E
Sbjct: 120 VKLELAVAKGKKLYDKRETLAKKDAQRKIEQAIKER 155
>gi|331091705|ref|ZP_08340539.1| SsrA-binding protein [Lachnospiraceae bacterium 2_1_46FAA]
gi|330403462|gb|EGG83021.1| SsrA-binding protein [Lachnospiraceae bacterium 2_1_46FAA]
Length = 155
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +S+ EN E+++
Sbjct: 3 KTEGKLIANNKKAYHDYFILDTYEAGISLHGTEVKSLRMGKCSIKESFIRIENGEVFIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R +KLLL K EI+++ + GM +VP+K+YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRVKKLLLHKSEINKMLGKTKEKGMAIVPLKVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR+ K+D R+ R + N
Sbjct: 122 GLARGKKLYDKRDDIAKKDQKREAQREFKIRN 153
>gi|330504851|ref|YP_004381720.1| SsrA-binding protein [Pseudomonas mendocina NK-01]
gi|328919137|gb|AEB59968.1| SsrA-binding protein [Pseudomonas mendocina NK-01]
Length = 160
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + P+ ++ N+KA ++Y + + FEAG+ L G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKH--PQGTIALNKKALHDYFVEQKFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DE WL ++I + P R RKLLL+KRE+ +L+ AV++ G T V + +Y+
Sbjct: 59 DEAWLMGAHITPLKTASTHVIADPIRTRKLLLNKRELDKLFGAVQQKGYTCVALSLYWKQ 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++ALA+GKK++DKR EK+RD +R+ R +R
Sbjct: 119 H-LVKCEIALAKGKKDFDKRHVEKERDANREVQRAMRSK 156
>gi|167751559|ref|ZP_02423686.1| hypothetical protein EUBSIR_02560 [Eubacterium siraeum DSM 15702]
gi|167655367|gb|EDR99496.1| hypothetical protein EUBSIR_02560 [Eubacterium siraeum DSM 15702]
gi|291530337|emb|CBK95922.1| SsrA-binding protein [Eubacterium siraeum 70/3]
Length = 154
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K ++DNRKAR++Y I+ S+EAGI LTGTEVKS+R +N+ DS+ + +N E+++
Sbjct: 3 KTALKTIADNRKARHDYFILESYEAGIELTGTEVKSIRDGGLNLKDSWISIDNGELFIKQ 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLL+ KREI +L V++DG+TL+P+ +YF K+ +
Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLMHKREIMKLLGQVKQDGLTLIPISVYFKGS-RVKVQV 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L +GKK +DKR+ +RD R R L+ N
Sbjct: 122 GLCKGKKQHDKRDAMAQRDAKRTIDRELKMRN 153
>gi|332035644|gb|EGI72134.1| tmRNA-binding protein SmpB [Pseudoalteromonas haloplanktis ANT/505]
Length = 159
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNI+++Y +N
Sbjct: 1 MAKKNSSKSTSNTIALNKKARHEYFLHDKFEAGVELQGWEVKSIRAGKVNITETYIHLKN 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLLS+RE+ RL A RDG +L+ +Y+
Sbjct: 61 GEAFLLGAQIQPLNSASTHVICDPLRYRKLLLSRRELDRLLGATERDGYSLIATAMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K K++ LA+GKK +DKR+ K +DW R+K R+++
Sbjct: 120 KCWVKLEFHLAKGKKLHDKRDDGKNKDWSREKERLMKHK 158
>gi|296116125|ref|ZP_06834743.1| SsrA-binding protein [Gluconacetobacter hansenii ATCC 23769]
gi|295977231|gb|EFG83991.1| SsrA-binding protein [Gluconacetobacter hansenii ATCC 23769]
Length = 165
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 71/161 (44%), Positives = 100/161 (62%), Gaps = 3/161 (1%)
Query: 1 MSLKSRGNPP---KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ K + + + NRK R+NY I+ + EAG+VL G EVKSLR+ + I+++YA
Sbjct: 1 MAAKQKNGSGMISTGIAAQNRKGRFNYTILETLEAGLVLKGPEVKSLRMGRATITEAYAA 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
N E+WL NSYIPEY PR RKLLL ++I RL R+G+TLVP+ I+F
Sbjct: 61 ERNGELWLFNSYIPEYQGGVLSRFEPRAPRKLLLHGKQIDRLLGESARNGVTLVPLDIHF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
N++GLAK+ L + +G+K DKR +RDW R K R++R
Sbjct: 121 NSRGLAKLTLGIGEGRKKADKRHAIAERDWQRDKARLIRNK 161
>gi|328956763|ref|YP_004374149.1| SsrA-binding protein [Carnobacterium sp. 17-4]
gi|328673087|gb|AEB29133.1| SsrA-binding protein [Carnobacterium sp. 17-4]
Length = 152
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ NRKA Y++ I+ + EAGIVL GTE+KS+R ++N+ D YA +N EI+L N
Sbjct: 3 KGSGKVLAQNRKASYDFSILDTVEAGIVLQGTEIKSIRAGRINLKDGYAKIQNGEIYLHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N+FNH P R RKLL+ K++I L + G TL+P+K+Y G AK+ +
Sbjct: 63 VHISPYEQGNQFNHDPLRTRKLLMHKKQITNLLGETKSSGNTLIPLKVYLKD-GYAKVLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKRE K++D R+ R LR
Sbjct: 122 GLAKGKKKYDKREDLKRKDQKRELDRALRSR 152
>gi|84623561|ref|YP_450933.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|123522246|sp|Q2P468|SSRP_XANOM RecName: Full=SsrA-binding protein
gi|84367501|dbj|BAE68659.1| small protein B [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 167
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K+ G K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D YA + EI
Sbjct: 9 KANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGYAYVRSGEI 68
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP +Y+++
Sbjct: 69 YLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTALYWSSN-K 127
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GK+N+DKR+ K+RDW R K R++R HN
Sbjct: 128 VKLEIALAKGKQNHDKRDAAKERDWQRDKQRVMRRHN 164
>gi|15602082|ref|NP_245154.1| SsrA-binding protein [Pasteurella multocida subsp. multocida str.
Pm70]
gi|13431892|sp|P57827|SSRP_PASMU RecName: Full=SsrA-binding protein
gi|12720441|gb|AAK02301.1| SmpB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 160
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+ E
Sbjct: 3 KKKVKVGTNTIALNKRARHDYFIEDEMEAGLELQGWEVKSMRAGKANISDSYIIFKQGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL ++E+ L+ RDG T+V + +Y+
Sbjct: 63 YLFGATIQPLNVASTHIVCDPTRTRKLLLKQKELASLFGKANRDGYTIVALSLYWKG-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK +DKRE K+R+W K RI++
Sbjct: 122 AKLKIGLAKGKKQHDKREDIKEREWKVTKDRIMKN 156
>gi|227498461|ref|ZP_03928607.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903919|gb|EEH89837.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 155
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 2/153 (1%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY-ATFENDEIWLT 66
K++++NRKAR++Y I +FE G+VLTGTEVKSLR K N+ DSY A ++ E++L
Sbjct: 3 KTNVKIIAENRKARHDYAIHETFETGVVLTGTEVKSLRAGKANLKDSYAAITKSGELYLY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I EY N FNH PRR+RKLL+ KREI +L + G TLVP+ +YF+ GL K+
Sbjct: 63 NLHISEYDHGNIFNHEPRRDRKLLMHKREIAKLIGKTKEKGFTLVPLTLYFS-HGLVKVK 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LALA GKK YDKR R R+ R L+ N
Sbjct: 122 LALATGKKLYDKRRDMADRSAKREIDRALKSRN 154
>gi|77456982|ref|YP_346487.1| SsrA-binding protein [Pseudomonas fluorescens Pf0-1]
gi|123606021|sp|Q3KIA8|SSRP_PSEPF RecName: Full=SsrA-binding protein
gi|77380985|gb|ABA72498.1| SsrA-binding protein [Pseudomonas fluorescens Pf0-1]
Length = 160
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR SK+ + DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL++RE+ +L AAV++ G V + Y++
Sbjct: 59 GEAWLLGSHITPLMTASTHVIADPVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ K ++AL +GKK YDKR+TE++RD R+ R +R
Sbjct: 119 H-MVKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNK 156
>gi|163789778|ref|ZP_02184215.1| SsrA-binding protein [Carnobacterium sp. AT7]
gi|159875000|gb|EDP69067.1| SsrA-binding protein [Carnobacterium sp. AT7]
Length = 152
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ NRKA Y++ I+ + EAGIVL GTE+KS+R ++N+ D YA +N EI+L N +I
Sbjct: 7 KVLAQNRKASYDFSILDTVEAGIVLQGTEIKSIRAGRINLKDGYAKIQNGEIFLHNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N+FNH P R RKLL+ K++I RL + G TL+P+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNQFNHDPLRTRKLLMHKKQIVRLLGETKSSGNTLIPLKVYLKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K++D R+ R LR
Sbjct: 126 GKKKYDKREDLKRKDQKRELDRALRSR 152
>gi|315634748|ref|ZP_07890031.1| SsrA-binding protein [Aggregatibacter segnis ATCC 33393]
gi|315476506|gb|EFU67255.1| SsrA-binding protein [Aggregatibacter segnis ATCC 33393]
Length = 160
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R K N+SDSY F+N E
Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEGEIEAGLELQGWEVKSMRAGKANLSDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL +RE+ L+ RDG TL+ + +Y+
Sbjct: 63 FLFGASIQPLSVASTHVVCDPTRTRKLLLKQRELDSLFGKANRDGFTLIALSLYWKG-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKRE K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKREDIKEREWKVAKERIMKN 156
>gi|6686320|sp|P43659|SSRP_ENTHR RecName: Full=SsrA-binding protein
Length = 154
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I
Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFVRIRNGEAFLHNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL + G+T+VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQISRLETETKNTGVTIVPLKVYIRD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK+YDKRE K++D DRQ R L+ +
Sbjct: 126 GKKSYDKREDLKRKDVDRQIDRTLKNFS 153
>gi|312885013|ref|ZP_07744702.1| SsrA-binding protein [Vibrio caribbenthicus ATCC BAA-2122]
gi|309367345|gb|EFP94908.1| SsrA-binding protein [Vibrio caribbenthicus ATCC BAA-2122]
Length = 161
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKSLRQGKANIAESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLLLS+RE+ L + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLLSRRELDNLLGRINREGMTLAALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|301169706|emb|CBW29307.1| trans-translation protein [Haemophilus influenzae 10810]
Length = 161
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I E+G+ L G EVKS+R K NISDSY F+N E
Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIESGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ +
Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKS-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKR+ K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156
>gi|28871649|ref|NP_794268.1| SsrA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|213966671|ref|ZP_03394822.1| SsrA-binding protein [Pseudomonas syringae pv. tomato T1]
gi|301383181|ref|ZP_07231599.1| SsrA-binding protein [Pseudomonas syringae pv. tomato Max13]
gi|302063384|ref|ZP_07254925.1| SsrA-binding protein [Pseudomonas syringae pv. tomato K40]
gi|302133757|ref|ZP_07259747.1| SsrA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|37999559|sp|Q87WN1|SSRP_PSESM RecName: Full=SsrA-binding protein
gi|28854901|gb|AAO57963.1| SsrA-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|213928521|gb|EEB62065.1| SsrA-binding protein [Pseudomonas syringae pv. tomato T1]
gi|330877256|gb|EGH11405.1| SsrA-binding protein [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330963952|gb|EGH64212.1| SsrA-binding protein [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|331016625|gb|EGH96681.1| SsrA-binding protein [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 160
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +I + P R RKLLL++RE+ +L ++V++ G V + IY+
Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTSSVQQKGYACVALSIYWKQ 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRTK 156
>gi|107028821|ref|YP_625916.1| SsrA-binding protein [Burkholderia cenocepacia AU 1054]
gi|116690020|ref|YP_835643.1| SsrA-binding protein [Burkholderia cenocepacia HI2424]
gi|134296008|ref|YP_001119743.1| SsrA-binding protein [Burkholderia vietnamiensis G4]
gi|170733355|ref|YP_001765302.1| SsrA-binding protein [Burkholderia cenocepacia MC0-3]
gi|206560433|ref|YP_002231197.1| SsrA-binding protein [Burkholderia cenocepacia J2315]
gi|254247903|ref|ZP_04941224.1| SmpB protein [Burkholderia cenocepacia PC184]
gi|123180011|sp|Q1BHG2|SSRP_BURCA RecName: Full=SsrA-binding protein
gi|166222366|sp|A0K8C3|SSRP_BURCH RecName: Full=SsrA-binding protein
gi|166222372|sp|A4JF55|SSRP_BURVG RecName: Full=SsrA-binding protein
gi|105897985|gb|ABF80943.1| SsrA-binding protein [Burkholderia cenocepacia AU 1054]
gi|116648109|gb|ABK08750.1| SsrA-binding protein [Burkholderia cenocepacia HI2424]
gi|124872679|gb|EAY64395.1| SmpB protein [Burkholderia cenocepacia PC184]
gi|134139165|gb|ABO54908.1| SsrA-binding protein [Burkholderia vietnamiensis G4]
gi|169816597|gb|ACA91180.1| SsrA-binding protein [Burkholderia cenocepacia MC0-3]
gi|198036474|emb|CAR52371.1| SSRA-binding protein [Burkholderia cenocepacia J2315]
Length = 148
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|227513640|ref|ZP_03943689.1| SsrA-binding protein [Lactobacillus buchneri ATCC 11577]
gi|227083156|gb|EEI18468.1| SsrA-binding protein [Lactobacillus buchneri ATCC 11577]
Length = 157
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +++ N+KAR++Y I+ ++EAGIVLTGTE+KS+R ++N+ D + N
Sbjct: 1 MAKRKHKQNNDNLMAQNKKARHDYSILETYEAGIVLTGTEIKSIRDRRINLKDGFVQIRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E ++ N +I EY Q N+ NH P RNRKLLL K+EI +L A + G+T+VP+K+Y +
Sbjct: 61 GEAYMVNVHISEYAQGNQINHDPLRNRKLLLHKKEIRKLGQATQDKGVTIVPLKVYLKS- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GK+ YDKRET K+RD R R+++
Sbjct: 120 GFAKVLIGVAKGKREYDKRETIKRRDEQRTIERVMKRF 157
>gi|315187228|gb|EFU20985.1| SsrA-binding protein [Spirochaeta thermophila DSM 6578]
Length = 153
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ KV+ +N++AR++Y I + E GI L G+EVKS++ +V+ D+Y +N
Sbjct: 1 MAKQN----DIKVIGENKRARFDYLIEDTLECGIELKGSEVKSVKEGRVSFGDAYVRVKN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE+WL +I Y A NH P R RKLL EIH+L G TLVP++ Y +
Sbjct: 57 DELWLMGLHITPYSHATIENHDPLRPRKLLAHAEEIHQLRRKTEERGYTLVPLRFYVK-R 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K+ + +A+GKK ++KRE K+RD R+ R LR +
Sbjct: 116 GLVKVLVGIAKGKKKHEKREAIKERDIKREMDRELRRY 153
>gi|62263009|gb|AAX78119.1| unknown protein [synthetic construct]
Length = 192
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ ++
Sbjct: 24 MLEMSKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKH 83
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL N P + RKLLL++REI+++ + + G T +P+ +Y+
Sbjct: 84 GEAWLFNCLITPLLSASTHVVADAAATRKLLLNRREINKIMGRIEQKGFTCIPLSMYWKG 143
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALAQGKK +DKR+ +K +DW R+K R+ ++
Sbjct: 144 P-RVKVEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 180
>gi|254252078|ref|ZP_04945396.1| tmRNA-binding protein [Burkholderia dolosa AUO158]
gi|124894687|gb|EAY68567.1| tmRNA-binding protein [Burkholderia dolosa AUO158]
Length = 148
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RILR
Sbjct: 122 KKLHDKRETEKKRDWEREKARILR 145
>gi|331701668|ref|YP_004398627.1| SsrA-binding protein [Lactobacillus buchneri NRRL B-30929]
gi|329129011|gb|AEB73564.1| SsrA-binding protein [Lactobacillus buchneri NRRL B-30929]
Length = 157
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + +++ N+KAR++Y I ++EAGIVLTGTE+KS+R ++N+ D + N
Sbjct: 1 MAKGKKQHNNDNLMAQNKKARHDYSISETYEAGIVLTGTEIKSIRARRINLKDGFVQIRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE ++ N +I EY + N+FNH P RNRKLLL K++I +L + G+T+VP+K+Y
Sbjct: 61 DEAYMMNVHISEYAEGNQFNHDPLRNRKLLLHKKQIRKLAQITQDKGVTIVPLKVYLK-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A GK YDKRET K+RD RQ R+++ +
Sbjct: 120 GFAKVLIGVATGKHEYDKRETIKRRDQKRQIERVMKHY 157
>gi|119897867|ref|YP_933080.1| SsrA-binding protein [Azoarcus sp. BH72]
gi|166222357|sp|A1K5T8|SSRP_AZOSB RecName: Full=SsrA-binding protein
gi|119670280|emb|CAL94193.1| probable SsrA-binding protein [Azoarcus sp. BH72]
Length = 148
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R + NI ++Y +EI++ +I
Sbjct: 3 IIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHITPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL EI RL V R G TLVP+ +++ AKG K ++ LA+G
Sbjct: 63 ASASTHIRTDPTRTRKLLLHGAEIARLIGKVERAGFTLVPLDLHY-AKGRVKAEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK YDKRE EKKRDW+R+K R++R
Sbjct: 122 KKQYDKREDEKKRDWEREKQRLMR 145
>gi|300932670|ref|ZP_07147926.1| SsrA-binding protein [Corynebacterium resistens DSM 45100]
Length = 184
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 72/152 (47%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
VV+ NRKAR++YHI+ ++E G+VL GTEVK+LR K ++ D+YAT + E+WL
Sbjct: 28 KGAGPLVVATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYATIDEGEVWLR 87
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY + NH PRR RKLLL +REI L VR TLVP+++YF A G K++
Sbjct: 88 GLHIPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNSTLVPLQLYFVA-GRLKVE 146
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA+GK+ YDKR+ K+R +R+ R +
Sbjct: 147 LALARGKQEYDKRQDIKRRTEEREITREMGRR 178
>gi|256961147|ref|ZP_05565318.1| SsrA-binding protein [Enterococcus faecalis Merz96]
gi|293386908|ref|ZP_06631477.1| SsrA-binding protein [Enterococcus faecalis S613]
gi|312907956|ref|ZP_07766939.1| SsrA-binding protein [Enterococcus faecalis DAPTO 512]
gi|312978516|ref|ZP_07790254.1| SsrA-binding protein [Enterococcus faecalis DAPTO 516]
gi|256951643|gb|EEU68275.1| SsrA-binding protein [Enterococcus faecalis Merz96]
gi|291083578|gb|EFE20541.1| SsrA-binding protein [Enterococcus faecalis S613]
gi|310626047|gb|EFQ09330.1| SsrA-binding protein [Enterococcus faecalis DAPTO 512]
gi|311288665|gb|EFQ67221.1| SsrA-binding protein [Enterococcus faecalis DAPTO 516]
Length = 154
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I
Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNAGITLVPLKVYIKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ DRQ R L+ +
Sbjct: 126 GKKQYDKREDLKRKEVDRQISRTLKNN 152
>gi|253699883|ref|YP_003021072.1| SsrA-binding protein [Geobacter sp. M21]
gi|251774733|gb|ACT17314.1| SsrA-binding protein [Geobacter sp. M21]
Length = 157
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I +EAG+VL GTEVKSLR K N++DS+A +N E +L N +
Sbjct: 2 GEKLICNNKKAFHDYFIEERYEAGMVLQGTEVKSLRNGKANLNDSFAMVKNGEAFLHNFH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLLL K+EI +L++ +R G TL+P++IYF G K +L L
Sbjct: 62 ILPYDFGNRENHDPDRMRKLLLHKKEIVKLFSKIREQGYTLIPLRIYFKD-GKVKAELGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKKNYDKRE K++D R L+E +
Sbjct: 121 AKGKKNYDKREVLKQKDVQRDIVAGLKERS 150
>gi|229916579|ref|YP_002885225.1| SsrA-binding protein [Exiguobacterium sp. AT1b]
gi|259511422|sp|C4L5G5|SSRP_EXISA RecName: Full=SsrA-binding protein
gi|229468008|gb|ACQ69780.1| SsrA-binding protein [Exiguobacterium sp. AT1b]
Length = 156
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K N ++ NRKA ++Y I + EAG+VLTGTE+KS+R SK+NI+D+Y F+
Sbjct: 1 MAKKKDSNA----LAQNRKASFDYAIEDTIEAGMVLTGTEIKSVRQSKINIADAYVRFDG 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E L N +I + Q NRFNH P R RKLLL K++I++L A RDG T++P+K+Y
Sbjct: 57 GEATLHNCHISPFEQGNRFNHDPLRVRKLLLHKKQINQLIGASGRDGYTIIPLKVYIK-N 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK L + +GKK YDKRE KK+D R R +R+
Sbjct: 116 GFAKCLLGVGKGKKKYDKREDLKKKDAKRDVDRAMRDR 153
>gi|222055956|ref|YP_002538318.1| SsrA-binding protein [Geobacter sp. FRC-32]
gi|221565245|gb|ACM21217.1| SsrA-binding protein [Geobacter sp. FRC-32]
Length = 151
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ +N+KA ++Y I FEAG+VL GTEVKSLR K N++DS+A +N E +L N +
Sbjct: 2 SEKLICNNKKAYHDYFIEEKFEAGMVLKGTEVKSLRNGKANLNDSFALIKNGEAFLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLLL K+EI +L+ +R G ++VP+++YF GL K++L +
Sbjct: 62 ISPYDFGNRENHDPDRMRKLLLHKKEIGKLFGKIREQGYSVVPLRLYFKT-GLVKVELGM 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE KK+D R L+E N
Sbjct: 121 AKGKKLYDKREDMKKKDMRRDVAVALKERN 150
>gi|161524450|ref|YP_001579462.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616]
gi|189350795|ref|YP_001946423.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616]
gi|221198302|ref|ZP_03571348.1| SsrA-binding protein [Burkholderia multivorans CGD2M]
gi|221208241|ref|ZP_03581245.1| SsrA-binding protein [Burkholderia multivorans CGD2]
gi|221215477|ref|ZP_03588441.1| SsrA-binding protein [Burkholderia multivorans CGD1]
gi|160341879|gb|ABX14965.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616]
gi|189334817|dbj|BAG43887.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616]
gi|221164661|gb|EED97143.1| SsrA-binding protein [Burkholderia multivorans CGD1]
gi|221171889|gb|EEE04332.1| SsrA-binding protein [Burkholderia multivorans CGD2]
gi|221182234|gb|EEE14635.1| SsrA-binding protein [Burkholderia multivorans CGD2M]
Length = 148
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|297623814|ref|YP_003705248.1| SsrA-binding protein [Truepera radiovictrix DSM 17093]
gi|297164994|gb|ADI14705.1| SsrA-binding protein [Truepera radiovictrix DSM 17093]
Length = 143
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 69/143 (48%), Positives = 94/143 (65%), Gaps = 1/143 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
NR+A ++Y ++ FEAG+VLTG+EVK+LR V + ++YA E+WL YIP Y
Sbjct: 2 IQNRRASFDYELLERFEAGLVLTGSEVKALRQGGVTLGEAYARVRGGEVWLEGLYIPPYK 61
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+A+ NH PRR RKLLL REI + A+ R G+TLVP K+YF G AK+++AL +GKK
Sbjct: 62 EASYNNHEPRRPRKLLLRAREIAEVQRALERKGLTLVPTKLYFK-NGWAKLEVALGRGKK 120
Query: 135 NYDKRETEKKRDWDRQKHRILRE 157
+DKR+ KRD RQ R L+
Sbjct: 121 RFDKRQDAAKRDAQRQIERALKR 143
>gi|294786678|ref|ZP_06751932.1| SsrA-binding protein [Parascardovia denticolens F0305]
gi|294485511|gb|EFG33145.1| SsrA-binding protein [Parascardovia denticolens F0305]
Length = 156
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 2/148 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE-IWLTNSYIP 71
V++ NR+AR++Y + EAG+VL GTEVKSLR + ++S ++ T + +WL + IP
Sbjct: 3 VIALNRRARHDYTLENRVEAGLVLRGTEVKSLREGRASLSQAFVTIDPHHEMWLEGANIP 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EYL NH P+R RKLLL +I R ++ G T+VP+ +YF G K+++ALA+
Sbjct: 63 EYLNGTWTNHAPKRKRKLLLHADQITRFERGIQAKGYTIVPLSLYFKE-GRVKVEIALAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKR+ ++ R+ R +R HN
Sbjct: 122 GKKEYDKRQALREEQDKREAQRQMRLHN 149
>gi|225575031|ref|ZP_03783641.1| hypothetical protein RUMHYD_03112 [Blautia hydrogenotrophica DSM
10507]
gi|225037755|gb|EEG48001.1| hypothetical protein RUMHYD_03112 [Blautia hydrogenotrophica DSM
10507]
Length = 155
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+++++N+KA ++Y I ++EAG+ L GTEVKSLR K +I +++ E E+++
Sbjct: 3 KKESIRLIANNKKAFHDYFIDDTYEAGVELFGTEVKSLRNGKCSIKEAFIRIEKGEVYVY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
++ Y + N FN P R +KLLL + EI +L + + G TLVP+K+YF L K++
Sbjct: 63 GMHVSPYEKGNIFNKDPLRVKKLLLHRYEIQKLEGKIAQKGYTLVPLKVYFKGS-LVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 122 VGLARGKKLYDKRQDIAKKDQKREAQREFKIKN 154
>gi|126654056|ref|ZP_01725883.1| SsrA-binding protein [Bacillus sp. B14905]
gi|126589461|gb|EAZ83607.1| SsrA-binding protein [Bacillus sp. B14905]
Length = 155
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I + EAG+VLTGTE+KS+R K + DSY N E W++N
Sbjct: 3 KGSGKVLAQNKKAGHDYFIEETIEAGMVLTGTEIKSIRAGKAQLKDSYVRITNGEAWISN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
++ + Q NRFNH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ +
Sbjct: 63 MHVSPFDQGNRFNHDPLRARKLLLHKKQIGELVGAVKRDGYTIVPLKMYIKD-GYAKLLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ +GKK+YDKR +K++ R+ R + +N
Sbjct: 122 GVGKGKKDYDKRNDMRKKEAKREMERTFKSNN 153
>gi|153955984|ref|YP_001396749.1| SsrA-binding protein [Clostridium kluyveri DSM 555]
gi|219856325|ref|YP_002473447.1| hypothetical protein CKR_2982 [Clostridium kluyveri NBRC 12016]
gi|187611476|sp|A5N2N2|SSRP_CLOK5 RecName: Full=SsrA-binding protein
gi|254778355|sp|B9E6A8|SSRP_CLOK1 RecName: Full=SsrA-binding protein
gi|146348842|gb|EDK35378.1| Hypothetical protein CKL_3375 [Clostridium kluyveri DSM 555]
gi|219570049|dbj|BAH08033.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 157
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ K +++NRKAR++Y I S EAGI L GTEVKS+R K N+ DSY N E
Sbjct: 1 MSAKNKSNNKTLAENRKARHDYFIEESMEAGIQLVGTEVKSIRAGKSNLKDSYGEIINGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I++ N +I Y + N FN P R+RKLLL K+EI RL + G T+VP+ +Y G
Sbjct: 61 IFIRNMHISPYEKGNIFNRDPLRDRKLLLHKKEIARLLGYTAQQGYTIVPLSLYLK-NGR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++LA+A+GKKNYDKR++ ++ R R ++E
Sbjct: 120 VKVNLAVAKGKKNYDKRDSMLEKAAKRDIERQMKER 155
>gi|261856125|ref|YP_003263408.1| SsrA-binding protein [Halothiobacillus neapolitanus c2]
gi|261836594|gb|ACX96361.1| SsrA-binding protein [Halothiobacillus neapolitanus c2]
Length = 158
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS + + ++ N+KA+++Y + FEAGI L G EVKSLR KV ++D++ +N
Sbjct: 1 MSKTKKS-AGESTIALNKKAKFDYFLNDRFEAGIALEGWEVKSLREGKVQLTDAHILLKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ I +Q ++ R RKLLL KREI +L AV R G T+VP +Y+
Sbjct: 60 GEAFMIGGQINPLIQASSHVRPDNTRIRKLLLHKREIAQLIGAVDRKGFTVVPTAMYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
G AK+++ALAQGKK++DKR T K++DW R K RILR
Sbjct: 119 NGRAKLEIALAQGKKDHDKRATLKEKDWARDKQRILR 155
>gi|237798540|ref|ZP_04587001.1| SsrA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021393|gb|EGI01450.1| SsrA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 160
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +I + P R RKLLL++RE+ +L AV++ G V + IY+
Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTTAVQQKGYACVALSIYWKQ 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156
>gi|257882700|ref|ZP_05662353.1| SmpB protein [Enterococcus faecium 1,231,502]
gi|257892979|ref|ZP_05672632.1| SmpB protein [Enterococcus faecium 1,231,408]
gi|257895354|ref|ZP_05675007.1| SmpB protein [Enterococcus faecium Com12]
gi|261208699|ref|ZP_05923136.1| SmpB protein [Enterococcus faecium TC 6]
gi|289566044|ref|ZP_06446481.1| SsrA-binding protein [Enterococcus faecium D344SRF]
gi|257818358|gb|EEV45686.1| SmpB protein [Enterococcus faecium 1,231,502]
gi|257829358|gb|EEV55965.1| SmpB protein [Enterococcus faecium 1,231,408]
gi|257831919|gb|EEV58340.1| SmpB protein [Enterococcus faecium Com12]
gi|260077201|gb|EEW64921.1| SmpB protein [Enterococcus faecium TC 6]
gi|289162151|gb|EFD10014.1| SsrA-binding protein [Enterococcus faecium D344SRF]
Length = 159
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N
Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y
Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITVVPLKVYIR-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+ + LA+GKK+YDKRE K++D DRQ R L+ +
Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158
>gi|317051882|ref|YP_004112998.1| SsrA-binding protein [Desulfurispirillum indicum S5]
gi|316946966|gb|ADU66442.1| SsrA-binding protein [Desulfurispirillum indicum S5]
Length = 150
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 61/150 (40%), Positives = 96/150 (64%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K++SDNR AR+++ I+ + E G+VL G+EVKS+R KVN+ D+Y + E++L +
Sbjct: 2 GIKIISDNRSARHHFEILETLETGVVLKGSEVKSIRQGKVNLKDAYCRVDRGELFLFQCH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y +A P R RKLL K EI +L A ++ G+ +VP K+YF G K+++AL
Sbjct: 62 ISPYEEAGPMAPDPTRVRKLLAHKMEIDKLAAKAQQGGLAIVPTKMYFK-NGKVKVEVAL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKRE+ K++D R+ + L+ H+
Sbjct: 121 GKGKKLHDKRESLKQKDAQREAQQALKSHS 150
>gi|226946328|ref|YP_002801401.1| SsrA-binding protein [Azotobacter vinelandii DJ]
gi|30173316|sp|Q8KTI4|SSRP_AZOVI RecName: Full=SsrA-binding protein
gi|259511415|sp|C1DFN0|SSRP_AZOVD RecName: Full=SsrA-binding protein
gi|22652757|gb|AAN03803.1|AF490983_3 small protein B [Azotobacter vinelandii]
gi|226721255|gb|ACO80426.1| SsrA-binding protein [Azotobacter vinelandii DJ]
Length = 160
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KA ++Y I + FEAG+ L+G EVKSLR K + DSY ++
Sbjct: 1 MAKQKKHPQGN--IAQNKKALHDYFIEQKFEAGLALSGWEVKSLRAGKAQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL S+I + P R RKLLL KRE+ RL+ +V++ G V + +Y+
Sbjct: 59 GEAWLMGSHITPLKTASTHVIADPTRTRKLLLHKRELGRLFGSVQQKGYACVALSLYWKK 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++ALA+GKK YDKR+TEK RD DR+ R +R
Sbjct: 119 H-LIKCEIALAKGKKEYDKRDTEKARDSDREIQRAIRSK 156
>gi|315304612|ref|ZP_07874849.1| SsrA-binding protein [Listeria ivanovii FSL F6-596]
gi|313627018|gb|EFR95914.1| SsrA-binding protein [Listeria ivanovii FSL F6-596]
Length = 154
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ N+KAR++Y I +FEAGIVL GTE+KS+R ++VN+ DSYA + EI+L N +I
Sbjct: 7 KLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL K++I L + G ++VP+K+Y G AK+ + +A+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHKKQISHLIGETKESGYSIVPLKMYIKD-GYAKVLIGVAR 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR+ K+++ R R +E
Sbjct: 126 GKKKYDKRQDLKQKEAKRDIERAFKER 152
>gi|187478250|ref|YP_786274.1| SsrA-binding protein [Bordetella avium 197N]
gi|123515008|sp|Q2L136|SSRP_BORA1 RecName: Full=SsrA-binding protein
gi|115422836|emb|CAJ49364.1| SsrA-binding protein [Bordetella avium 197N]
Length = 153
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVKS+R +V + +SY + E++L ++
Sbjct: 3 IIDNRKASHDYFIEDRYEAGLVLQGWEVKSIRAGRVQLKESYVIVRDGELFLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL EIH+L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEIHKLIGKVEQRGFTLVPLNLHYK-NGRVKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKR+T +++DW R++ R+++
Sbjct: 122 KKLYDKRDTSREKDWLRERERVMKH 146
>gi|66047430|ref|YP_237271.1| SsrA-binding protein [Pseudomonas syringae pv. syringae B728a]
gi|302185409|ref|ZP_07262082.1| SsrA-binding protein [Pseudomonas syringae pv. syringae 642]
gi|75500687|sp|Q4ZNN9|SSRP_PSEU2 RecName: Full=SsrA-binding protein
gi|63258137|gb|AAY39233.1| SmpB protein [Pseudomonas syringae pv. syringae B728a]
gi|330969628|gb|EGH69694.1| SsrA-binding protein [Pseudomonas syringae pv. aceris str.
M302273PT]
Length = 160
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +I + P R RKLLL+KRE+ +L ++V++ G V + +Y+
Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKE 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LVKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156
>gi|312868390|ref|ZP_07728590.1| SsrA-binding protein [Streptococcus parasanguinis F0405]
gi|322389983|ref|ZP_08063522.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 903]
gi|311096135|gb|EFQ54379.1| SsrA-binding protein [Streptococcus parasanguinis F0405]
gi|321143296|gb|EFX38735.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 903]
Length = 155
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQDPDRRRKLLLHKKQIQKLDQDTKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++++N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKQYN 153
>gi|323494432|ref|ZP_08099541.1| SsrA-binding protein [Vibrio brasiliensis LMG 20546]
gi|323311362|gb|EGA64517.1| SsrA-binding protein [Vibrio brasiliensis LMG 20546]
Length = 161
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGMELQGWEVKSLRQGKANIAESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLLLS+RE+ L + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHIVANPTRVRKLLLSRRELDNLLGRINREGMTLAALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|199597282|ref|ZP_03210713.1| SsrA-binding protein [Lactobacillus rhamnosus HN001]
gi|229551790|ref|ZP_04440515.1| SsrA-binding protein SmpB [Lactobacillus rhamnosus LMS2-1]
gi|258539189|ref|YP_003173688.1| SsrA-binding protein [Lactobacillus rhamnosus Lc 705]
gi|199591798|gb|EDY99873.1| SsrA-binding protein [Lactobacillus rhamnosus HN001]
gi|229314844|gb|EEN80817.1| SsrA-binding protein SmpB [Lactobacillus rhamnosus LMS2-1]
gi|257150865|emb|CAR89837.1| SsrA-binding protein [Lactobacillus rhamnosus Lc 705]
Length = 157
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N
Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL N +I Y + N FN P RNRKLLL K+EI +L R G+TLVP+++Y
Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQGVTLVPLRMYLK-H 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GK NYDKRET K++D +R+ R L+
Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 156
>gi|119471585|ref|ZP_01613999.1| SsrA-binding protein [Alteromonadales bacterium TW-7]
gi|119445528|gb|EAW26814.1| SsrA-binding protein [Alteromonadales bacterium TW-7]
Length = 159
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNIS++Y +N
Sbjct: 1 MAKKNSSKSTSNTIALNKKARHEYFLHDKFEAGVELQGWEVKSIRAGKVNISETYIHLKN 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S I + P R RKLLLS+RE+ RL A RDG +LV +Y+
Sbjct: 61 GEAFLLGSQIQPLNSASTHVICDPMRYRKLLLSRRELDRLVGATERDGYSLVATAMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K K++ LA+GKK +DKRE K +DW R+K R+++
Sbjct: 120 KCWVKLEFHLAKGKKMHDKREDGKNKDWSREKERLMKHK 158
>gi|325528305|gb|EGD05464.1| SsrA-binding protein [Burkholderia sp. TJI49]
Length = 148
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++ EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKHAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKRDW+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145
>gi|239905387|ref|YP_002952126.1| SsrA-binding protein [Desulfovibrio magneticus RS-1]
gi|259511419|sp|C4XJ76|SSRP_DESMR RecName: Full=SsrA-binding protein
gi|239795251|dbj|BAH74240.1| SsrA-binding protein [Desulfovibrio magneticus RS-1]
Length = 154
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +K+V+ N+KAR+ Y + +EAG+VL G+EVKSLR+ +++ D Y F++
Sbjct: 1 MAAKE---SGEKLVALNKKARHLYEFLEKYEAGLVLMGSEVKSLRLGRISFKDGYVKFQD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E ++ +I Y A H P R RKLLL EI+ + V + G+T+VP+++YF
Sbjct: 58 GEAFMIGVHIAPYENAGYAGHEPERPRKLLLHAAEINAMRVKVEQKGLTVVPVRVYFK-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+GKK +D+R+ K RD DR R L H
Sbjct: 117 GRAKVEIALARGKKVFDRRDDLKSRDLDRDAARELARH 154
>gi|118602404|ref|YP_903619.1| SsrA-binding protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
gi|166223448|sp|A1AW41|SSRP_RUTMC RecName: Full=SsrA-binding protein
gi|118567343|gb|ABL02148.1| SsrA-binding protein [Candidatus Ruthia magnifica str. Cm
(Calyptogena magnifica)]
Length = 165
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 104/161 (64%), Gaps = 3/161 (1%)
Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ ++ +++ N+KAR+NY I ++ EAG+ L G EVKSLR SKV I +SY +
Sbjct: 1 MAKNNKKIKTSLNIIALNKKARHNYFIEQTLEAGLSLEGWEVKSLRDSKVQIKESYVILK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N+E++L ++I + N R RKLLL++ EI+R+ + + G T+VP+K+Y+
Sbjct: 61 NNELFLFGAHISPLKSVSTHVNSDSTRTRKLLLNRLEINRIKDNINQKGATIVPLKLYW- 119
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+G K+++ +A+GKK++DKR+ K +DW R K R L+E N
Sbjct: 120 ARGKVKLEIGMAKGKKSHDKRQDIKLKDWQRDKQRTLKETN 160
>gi|300858000|ref|YP_003782983.1| hypothetical protein cpfrc_00582 [Corynebacterium
pseudotuberculosis FRC41]
gi|300685454|gb|ADK28376.1| hypothetical protein cpfrc_00582 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205727|gb|ADL10069.1| SsrA-binding protein/SmpB superfamily [Corynebacterium
pseudotuberculosis C231]
gi|302330281|gb|ADL20475.1| SsrA-binding protein/SmpB superfamily [Corynebacterium
pseudotuberculosis 1002]
gi|308275964|gb|ADO25863.1| SsrA-binding protein/SmpB superfamily [Corynebacterium
pseudotuberculosis I19]
Length = 163
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ NRKAR++Y I+ S+E GIVL GTE+KSLR K ++ D++AT + E+WL N IP
Sbjct: 13 VIATNRKARHDYKILESYECGIVLLGTEIKSLREGKASLVDAFATIDEGEVWLRNLNIPI 72
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH P+R RKLL+ +REI L VR TLVP+ +YF+ G K++L LAQG
Sbjct: 73 YSMGSWTNHSPKRTRKLLMHRREIDSLMGKVRDGNKTLVPLSLYFSG-GRLKVELGLAQG 131
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K++YDKR+ K+R +R+ R L
Sbjct: 132 KQDYDKRQDIKRRTEEREVVRELGHR 157
>gi|258645870|ref|ZP_05733339.1| SsrA-binding protein [Dialister invisus DSM 15470]
gi|260403243|gb|EEW96790.1| SsrA-binding protein [Dialister invisus DSM 15470]
Length = 156
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P VS NR+A ++Y I ++E GI LTGTEVKS+R +VN+ DS+A +
Sbjct: 1 MAAEKNAPP----VSANRQAYHDYFIHETYECGIALTGTEVKSIRAGRVNLRDSFARVQK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N++I Y Q N FNH P R RKLLL K+EI ++ ++ G TLVP+K+YF
Sbjct: 57 GEVFLWNAHISPYEQGNIFNHDPLRTRKLLLHKKEILKIENTLKTKGYTLVPLKMYFR-H 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+++ LA GKK YDKR+ ++ R R ++E
Sbjct: 116 GKIKVEIGLATGKKLYDKRQDMAAKEAKRDLARRIKE 152
>gi|15894004|ref|NP_347353.1| SsrA-binding protein [Clostridium acetobutylicum ATCC 824]
gi|22096170|sp|Q97L49|SSRP_CLOAB RecName: Full=SsrA-binding protein
gi|15023597|gb|AAK78693.1|AE007587_1 TmRNA-binding protein SmpB [Clostridium acetobutylicum ATCC 824]
gi|325508130|gb|ADZ19766.1| SsrA-binding protein [Clostridium acetobutylicum EA 2018]
Length = 155
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K N ++DNRKA ++Y I ++E G+ L GTEVKS++ K N+ DSYA N
Sbjct: 1 MAKK---NTENNTLADNRKAWHDYFIEETYECGVELVGTEVKSIKNGKANLKDSYAEIRN 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++ N ++ Y + N FN P R R+LLL K EI +L + G TLVP+ +Y +
Sbjct: 58 GEVFACNMHVSPYKEGNIFNVDPLRKRRLLLHKSEIDKLLGFTSQKGYTLVPIALYLKNR 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ LA+A GKKNYDKR+ K++D R+ R ++ +
Sbjct: 118 -RVKVKLAVAVGKKNYDKRDALKEKDARREIDRAMKNN 154
>gi|289675996|ref|ZP_06496886.1| SsrA-binding protein [Pseudomonas syringae pv. syringae FF5]
gi|330895327|gb|EGH27665.1| SsrA-binding protein [Pseudomonas syringae pv. japonica str.
M301072PT]
gi|330950333|gb|EGH50593.1| SsrA-binding protein [Pseudomonas syringae Cit 7]
gi|330981065|gb|EGH79168.1| SsrA-binding protein [Pseudomonas syringae pv. aptata str. DSM
50252]
Length = 160
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +I + P R RKLLL+KRE+ +L ++V++ G V + +Y+
Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKE 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LVKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156
>gi|291165727|gb|EFE27775.1| SsrA-binding protein [Filifactor alocis ATCC 35896]
Length = 152
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ KVV+ NRKAR+NY I+ ++EAGI L GTEVKS+R SKVN+++ + + +N E +L
Sbjct: 2 KDSNVKVVAKNRKARFNYEILETYEAGIELKGTEVKSVRASKVNLTEGFISIDNGEAFLK 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y Q N FN P R RKLLL KREI +L + G TLVP+ +Y G K+
Sbjct: 62 QVHISPYEQGNIFNVDPVRVRKLLLHKREIKKLIGETAQKGFTLVPLSMYLK-NGKVKLS 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ LA+GK +DKR+ K+D R R ++ +
Sbjct: 121 VGLARGKNIHDKRQDMAKKDAQRSIERAMKNY 152
>gi|315127269|ref|YP_004069272.1| SsrA-binding protein [Pseudoalteromonas sp. SM9913]
gi|315015783|gb|ADT69121.1| SsrA-binding protein [Pseudoalteromonas sp. SM9913]
Length = 159
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ ++ N+KAR+ Y + FEAGI L G EVKS+R KVNIS++Y +N
Sbjct: 1 MAKKNSSKSTSNTIALNKKARHEYFLHDKFEAGIELQGWEVKSIRAGKVNISETYIHLKN 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S I + P R RKLLLS+RE+ RL A RDG +L+ +Y+
Sbjct: 61 GEAFLLGSTIQPLNSASTHVICDPLRYRKLLLSRRELDRLVGATERDGYSLIATAMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K K++ LA+GKK +DKRE K +DW R+K R+++
Sbjct: 120 KCWVKLEFHLAKGKKMHDKREDGKNKDWSREKERLMKHK 158
>gi|261868535|ref|YP_003256457.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D11S-1]
gi|261413867|gb|ACX83238.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D11S-1]
Length = 160
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P ++ N++AR++Y I EAG+ L G EVKS+R KVN+SDSY F+N E
Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKVNLSDSYVIFKNGEA 62
Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I + P R RKLLL +RE+ L+ RDG TL+ + + +
Sbjct: 63 FLFGATIQPLSVASTHIVCDPTRTRKLLLKQRELDSLFGKANRDGFTLIALSLSWKG-AW 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AK+ + LA+GKK DKRE K+R+W K RI++
Sbjct: 122 AKVKIGLAKGKKQQDKREDIKEREWKVVKERIMKN 156
>gi|149926565|ref|ZP_01914826.1| SsrA-binding protein [Limnobacter sp. MED105]
gi|149824928|gb|EDM84142.1| SsrA-binding protein [Limnobacter sp. MED105]
Length = 149
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DN+KA ++Y I +EAGIVL G EVKS+R +V I +S+ N E+WL N +I
Sbjct: 3 IIDNKKAGFDYFIEEKYEAGIVLEGWEVKSIRDGRVQIKESHIVVRNGELWLLNCHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N R RKLL+ K+EI RL V + G +LVP+ ++F G K+D+ALA+G
Sbjct: 63 TSASTHVNPVNTRTRKLLMHKKEISRLIGKVEQKGYSLVPLNLHFK-NGRVKVDMALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR+T K +DW R++ R+++ H
Sbjct: 122 KKQHDKRDTLKDKDWKREQERLMKIH 147
>gi|116618814|ref|YP_819185.1| SsrA-binding protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|122270986|sp|Q03VG0|SSRP_LEUMM RecName: Full=SsrA-binding protein
gi|116097661|gb|ABJ62812.1| SsrA-binding protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 154
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T N
Sbjct: 1 MAKKKQNTENY--LAQNRKARFNYAIAETFEAGISLTGTEIKSVRAGQITIGDGFVTIHN 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
LTN +I Y+Q N+FN P R R+LLL KREI L A + G+T+VP+K+Y
Sbjct: 59 GNALLTNVHISSYVQGNQFNVDPLRTRQLLLHKREIRVLEKATQEQGVTIVPLKVYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+ + + +GKK YDKRE KKRD +R+ R +
Sbjct: 118 GFAKVLVGIGRGKKKYDKREDIKKRDQERELSRRFKN 154
>gi|257879707|ref|ZP_05659360.1| SmpB protein [Enterococcus faecium 1,230,933]
gi|257890371|ref|ZP_05670024.1| SmpB protein [Enterococcus faecium 1,231,410]
gi|260559634|ref|ZP_05831814.1| SmpB protein [Enterococcus faecium C68]
gi|257813935|gb|EEV42693.1| SmpB protein [Enterococcus faecium 1,230,933]
gi|257826731|gb|EEV53357.1| SmpB protein [Enterococcus faecium 1,231,410]
gi|260074302|gb|EEW62624.1| SmpB protein [Enterococcus faecium C68]
Length = 159
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N
Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y
Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+ + LA+GKK+YDKRE K++D DRQ R L+ +
Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158
>gi|224475926|ref|YP_002633532.1| SsrA-binding protein [Staphylococcus carnosus subsp. carnosus
TM300]
gi|254778379|sp|B9DJK4|SSRP_STACT RecName: Full=SsrA-binding protein
gi|222420533|emb|CAL27347.1| putative tmRNA-binding protein SmpB [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 156
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DS+A +N
Sbjct: 1 MSKKKKKSPG--TLAENRKARHDYNIEDTIEAGIVLRGTEIKSIRRGSANLKDSFAQVKN 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI++ N +I Y + NRFNH P R RKLLL KREI +L R G +++P+K+Y
Sbjct: 59 GEIYVHNMHIAPYEEGNRFNHDPLRPRKLLLHKREIEKLGTRTREIGYSIIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ K+ + +A+GKK YDKR+ K + R R +++
Sbjct: 118 GVCKVLIGVARGKKKYDKRQDLKDKAVKRDMQRAMKDR 155
>gi|296876087|ref|ZP_06900141.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 15912]
gi|296432798|gb|EFH18591.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 15912]
Length = 155
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTMEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQDPDRRRKLLLHKKQIQKLDQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++++N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKQYN 153
>gi|90407679|ref|ZP_01215859.1| SsrA-binding protein (small protein B) [Psychromonas sp. CNPT3]
gi|90311270|gb|EAS39375.1| SsrA-binding protein (small protein B) [Psychromonas sp. CNPT3]
Length = 161
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + + ++ N++A + YH+ FEAG+ L G EVKSLR K NI+DSY +
Sbjct: 1 MAKKKSKTKNNENTIARNKRASHEYHLEERFEAGLELQGWEVKSLRAGKANIADSYIFLK 60
Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E WL + P + P R RKLLL +RE+ L V R G +++P+ +Y+
Sbjct: 61 NGEAWLLGASFPPLDAACSHVVCEPMRYRKLLLKRRELDNLLGKVDRQGYSIIPISLYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI ALA+GK+ +DKR +K R+W QK R+++
Sbjct: 121 -NAWVKISFALAKGKQAHDKRNADKDREWQVQKERMMKH 158
>gi|307290371|ref|ZP_07570286.1| SsrA-binding protein [Enterococcus faecalis TX0411]
gi|306498564|gb|EFM68066.1| SsrA-binding protein [Enterococcus faecalis TX0411]
Length = 154
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I
Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ RQ R L+ +
Sbjct: 126 GKKQYDKREDLKRKEVARQISRTLKNN 152
>gi|284006722|emb|CBA71979.1| SsrA-binding protein (small protein B) [Arsenophonus nasoniae]
Length = 160
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N +AR+ Y I EAG+ L G EVK+LR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATITLNTRARHEYFINEEIEAGLALQGWEVKALRAGKANISDSYVLLKE 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R RKLLL++RE+ L+ + R+G T V + +Y+
Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPMRTRKLLLNQRELDSLFGKINREGHTAVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 120 NAWCKVKIGVAKGKKEHDKRSDIKEREWKLDKARIMKN 157
>gi|300857051|ref|YP_003782035.1| putative SsrA-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300437166|gb|ADK16933.1| predicted SsrA-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 157
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 99/159 (62%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K N K +++NRKAR++Y I S EAGI L GTEVKS+R K N+ DSYA N
Sbjct: 1 MTNKKSSN---KTLAENRKARHDYFIEESMEAGIELVGTEVKSIRAGKCNLKDSYAEIRN 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI++ N +I Y Q N FN P RNRKLLL K EI +L + G TLVPM +Y
Sbjct: 58 GEIFICNMHISPYEQGNIFNKDPLRNRKLLLHKNEIIKLQQYTAQQGYTLVPMSLYLK-Y 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K++LA+A+GKKNYDKR T +R R R ++E +
Sbjct: 117 GRVKVNLAVAKGKKNYDKRNTMLERAAKRDIDRQMKERS 155
>gi|257884014|ref|ZP_05663667.1| SmpB protein [Enterococcus faecium 1,231,501]
gi|257819852|gb|EEV47000.1| SmpB protein [Enterococcus faecium 1,231,501]
Length = 159
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N
Sbjct: 1 MEETTMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y
Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+ + LA+GKK+YDKRE K++D DRQ R L+ +
Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158
>gi|330468491|ref|YP_004406234.1| SsrA-binding protein [Verrucosispora maris AB-18-032]
gi|328811462|gb|AEB45634.1| SsrA-binding protein [Verrucosispora maris AB-18-032]
Length = 163
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + + V+ NRKAR++Y I++++EAGIVL GTEVKSLR +V++ D++A + E
Sbjct: 1 MSTSRSGERTFVASNRKARHDYTILKTYEAGIVLAGTEVKSLRAGRVSLVDAFAQERDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I L +I EY + NH PRR RKLLL + EI R+ A +R G TLVP+ +YF+ G
Sbjct: 61 IMLYGLHIAEYGYGSWTNHAPRRTRKLLLRRVEIDRILAQIREGGFTLVPLSMYFSD-GW 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK++LA+A+G+K+YDKR+ RD DR+ R L
Sbjct: 120 AKVELAVAKGRKSYDKRQALAARDADREIARELGRR 155
>gi|239618097|ref|YP_002941419.1| SsrA-binding protein [Kosmotoga olearia TBF 19.5.1]
gi|239506928|gb|ACR80415.1| SsrA-binding protein [Kosmotoga olearia TBF 19.5.1]
Length = 147
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 72/142 (50%), Positives = 103/142 (72%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ N+KAR+ YHI+ ++EAGI L GTEVKSLR +IS+++ FE+ E++L N+ I
Sbjct: 2 KIVATNKKARFQYHILETYEAGIQLLGTEVKSLRNGSASISEAFCKFEDGELFLINANIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y +NH P R RKLL+ KRE+ R+ V+ G+TL+P KIYFN KG+AK+++ALA+
Sbjct: 62 QYSHGTHWNHDPLRKRKLLMHKRELLRIAQKVKERGLTLIPTKIYFNDKGIAKVEIALAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHR 153
GK+ YDKRE KRD +R+ R
Sbjct: 122 GKRLYDKREDIAKRDLERRLKR 143
>gi|238059317|ref|ZP_04604026.1| SsrA-binding protein [Micromonospora sp. ATCC 39149]
gi|237881128|gb|EEP69956.1| SsrA-binding protein [Micromonospora sp. ATCC 39149]
Length = 162
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+ +V+ N+KAR++Y I++++EAG+VL GTEVKSLR V++ D++A + E+ L
Sbjct: 5 TGRTLVASNKKARHDYDILKTYEAGLVLAGTEVKSLRAGYVSLVDAFAQEHDGELMLHGL 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY + NH PRR RKLLL + EI R+ VR G+TLVP+ +YF+ G AK++L
Sbjct: 65 HIAEYGFGSWTNHQPRRTRKLLLRRIEIDRILDRVREGGLTLVPLSLYFSD-GWAKVELG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+G+++YDKR+ +RD +R+ R L
Sbjct: 124 LARGRRSYDKRQALAERDANREIARELGRR 153
>gi|323484419|ref|ZP_08089785.1| hypothetical protein HMPREF9474_01536 [Clostridium symbiosum
WAL-14163]
gi|323692433|ref|ZP_08106668.1| SsrA-binding protein [Clostridium symbiosum WAL-14673]
gi|323402197|gb|EGA94529.1| hypothetical protein HMPREF9474_01536 [Clostridium symbiosum
WAL-14163]
gi|323503485|gb|EGB19312.1| SsrA-binding protein [Clostridium symbiosum WAL-14673]
Length = 154
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 99/153 (64%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K++++N+KA ++Y I +EAGI L GTEVKSLR+ K +I +S+ EN+++++
Sbjct: 2 GKESVKLIANNKKAYHDYFIDEKYEAGIELFGTEVKSLRMGKCSIKESFIKIENNQVYVY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R+RKLLL K EI +L A ++ G TLVP+++YF L K++
Sbjct: 62 GMHISPYEKGNIFNKDPLRSRKLLLHKLEIRKLQAKIKEKGYTLVPLQVYFKGS-LVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 121 IGLARGKKLYDKRDDIAKKDAKREIEREFKARN 153
>gi|227832562|ref|YP_002834269.1| tmRNA-binding protein [Corynebacterium aurimucosum ATCC 700975]
gi|262183569|ref|ZP_06042990.1| SsrA-binding protein [Corynebacterium aurimucosum ATCC 700975]
gi|227453578|gb|ACP32331.1| tmRNA-binding protein [Corynebacterium aurimucosum ATCC 700975]
Length = 167
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
++ NR+AR++Y I+ + E G+VL GTE+KS+R K++++D++AT ++ E+++ N
Sbjct: 13 DNNSTLATNRRARHDYTILDTLECGMVLVGTEIKSMREGKISLADAFATIDDGEVYIRNL 72
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY Q + NH P+R RKLLL +REI +L VR TL+P+K+Y G AK +L
Sbjct: 73 HIPEYSQGSWTNHSPKRTRKLLLHRREIDKLMGQVRDGNKTLIPLKVYLKD-GRAKCELG 131
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK++YDKRE K+RD DR R L
Sbjct: 132 LAKGKQDYDKREAIKRRDQDRDITRELGRR 161
>gi|261338112|ref|ZP_05965996.1| SsrA-binding protein [Bifidobacterium gallicum DSM 20093]
gi|270276734|gb|EFA22588.1| SsrA-binding protein [Bifidobacterium gallicum DSM 20093]
Length = 164
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ KS G +++ N+KAR++Y + +EAGIVLTGTEVKSLR + ++++++
Sbjct: 1 MAKKSSG-VRDGIIAQNKKARHDYALEDEYEAGIVLTGTEVKSLREGRASLAEAFISIDR 59
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EIWL + IPEYL NH P+R RKLLL +I +L + G T+VP+ +YF
Sbjct: 60 RGEIWLEGANIPEYLNGTWNNHAPKRKRKLLLHGAQIEKLARQTQAKGYTIVPLSLYFKD 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ +ALA+GKK +DKR+ ++ R+ R++R N
Sbjct: 120 -GRVKVKIALARGKKEFDKRQALREEQDKREALRVMRYRN 158
>gi|302386590|ref|YP_003822412.1| SsrA-binding protein [Clostridium saccharolyticum WM1]
gi|302197218|gb|ADL04789.1| SsrA-binding protein [Clostridium saccharolyticum WM1]
Length = 154
Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K++++N+KA ++Y I +EAGI L GTEVKS+R+ K ++ +S+ + E+++
Sbjct: 2 GKESFKLIANNKKAYHDYFIDEKYEAGIELAGTEVKSIRMGKCSVKESFVRIDKGEVYVY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
I Y + N FN P R RKLLL + EI +L A + + G TLVP+++YF L K++
Sbjct: 62 GMNISPYEKGNIFNKDPLRVRKLLLHRTEIGKLDAKIAQKGYTLVPLQVYFKGS-LVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 121 IGLARGKKLYDKRDDIAKKDQKRELERDFKVRN 153
>gi|225570838|ref|ZP_03779861.1| hypothetical protein CLOHYLEM_06942 [Clostridium hylemonae DSM
15053]
gi|225160300|gb|EEG72919.1| hypothetical protein CLOHYLEM_06942 [Clostridium hylemonae DSM
15053]
Length = 161
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ ++E GI L GTEVKSLR+ K +I +S+ EN E+++
Sbjct: 9 KSNGKMIANNKKAYHDYFILDTYETGIALHGTEVKSLRMGKCSIKESFIRIENGEVYIYG 68
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K EI+++ + G+ +VP+K+YF L K+++
Sbjct: 69 MHISPYEKGNIFNKDPLRVRKLLLHKSEINKMLGKTKEKGIAIVPLKVYFKGS-LVKVEI 127
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR+ K+D R+ R + N
Sbjct: 128 GLAKGKKLYDKRQDIAKKDQQREAQRDFKVRN 159
>gi|127512200|ref|YP_001093397.1| SsrA-binding protein [Shewanella loihica PV-4]
gi|166223453|sp|A3QCE0|SSRP_SHELP RecName: Full=SsrA-binding protein
gi|126637495|gb|ABO23138.1| SsrA-binding protein [Shewanella loihica PV-4]
Length = 163
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P ++ N++A ++Y FEAG+ L G EVKS+RV KVN+S+SY + E +L
Sbjct: 12 PPATIARNKRANFDYKFEEKFEAGLSLMGWEVKSIRVGKVNLSESYVFLRDGEAYLFGCT 71
Query: 70 IPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I + P R+RKLLL++RE+ +L V R G ++VP+ +Y+ K+++
Sbjct: 72 ITPLNTASTHVVCDPMRDRKLLLNRRELDKLQGLVERQGYSIVPISMYWRKNAWVKLEIG 131
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L +GKK +DKR+ K+R+W +K R ++
Sbjct: 132 LGKGKKEHDKRDDTKEREWKIEKSRTMKH 160
>gi|320095993|ref|ZP_08027606.1| SsrA-binding protein [Actinomyces sp. oral taxon 178 str. F0338]
gi|319977064|gb|EFW08794.1| SsrA-binding protein [Actinomyces sp. oral taxon 178 str. F0338]
Length = 175
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KK V+ N++AR++Y I ++EAG+ L GTEVK+LR+ + ++ DS+ E W
Sbjct: 17 KAASDAKKTVARNKRARHDYLIEDTWEAGLSLMGTEVKALRMGRASLVDSWVEVSGGEAW 76
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IP Y Q + NH P R RKLLL + EI R+ + G T+VP+++YF G AK
Sbjct: 77 LYGANIPLYAQGSWTNHAPTRKRKLLLHRAEIDRMASKASAKGYTIVPLELYFMG-GRAK 135
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ALA+GK+ +DKR+ +++ R+ R +R +
Sbjct: 136 VEIALAKGKQEWDKRQALREKQDQREAERAMRRY 169
>gi|289450836|ref|YP_003475571.1| SsrA-binding protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289185383|gb|ADC91808.1| SsrA-binding protein [Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 155
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/151 (49%), Positives = 105/151 (69%), Gaps = 1/151 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KVV+DNRKA Y+Y ++ +EAGIVL+GTEVKS+R VN+ DSYA + E+W+
Sbjct: 5 KGIKVVADNRKAHYDYIVLNKYEAGIVLSGTEVKSIRGGNVNLKDSYAKILHGEMWVIGM 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y Q NR+N P R+RKLLL K+EI RL+ ++++G+TLVP+++YF G K++L
Sbjct: 65 HISPYEQGNRYNLDPMRSRKLLLHKQEIDRLFGKIKQEGLTLVPLQLYFK-NGRVKLELG 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKKNYDKR++ +R R R L+ N
Sbjct: 124 LAKGKKNYDKRQSMIQRTVKRDIDRALKNSN 154
>gi|307718824|ref|YP_003874356.1| SsrA-binding protein [Spirochaeta thermophila DSM 6192]
gi|306532549|gb|ADN02083.1| SsrA-binding protein [Spirochaeta thermophila DSM 6192]
Length = 153
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ KV+ +N++AR++Y I + E GI L G+EVKS++ +V+ D+Y +N
Sbjct: 1 MAKQN----DIKVLGENKRARFDYLIEDTLECGIELKGSEVKSVKEGRVSFGDAYVRVKN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE+WL +I Y A NH P R RKLL EIH+L G TLVP++ Y +
Sbjct: 57 DELWLMGLHITPYSHATIENHDPLRPRKLLAHAEEIHQLRRKTEERGYTLVPLRFYVK-R 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K+ + +A+GKK ++KRE K+RD R+ R LR +
Sbjct: 116 GLVKVLVGIAKGKKKHEKREAIKERDIKREMDRELRRY 153
>gi|119025485|ref|YP_909330.1| SsrA-binding protein [Bifidobacterium adolescentis ATCC 15703]
gi|154486917|ref|ZP_02028324.1| hypothetical protein BIFADO_00750 [Bifidobacterium adolescentis
L2-32]
gi|166222362|sp|A1A0L5|SSRP_BIFAA RecName: Full=SsrA-binding protein
gi|118765069|dbj|BAF39248.1| SsrA-binding protein [Bifidobacterium adolescentis ATCC 15703]
gi|154084780|gb|EDN83825.1| hypothetical protein BIFADO_00750 [Bifidobacterium adolescentis
L2-32]
Length = 159
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+
Sbjct: 1 MAK----EQGTKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDR 56
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL + IPEYL NH P+R RKLLL +I +L + G T++P+ +YF
Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAQIDKLARQTQAKGFTIIPLSLYFKD 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+++ALA+GKK +DKR++ ++ R+ R +R N
Sbjct: 117 -GRVKVEIALARGKKEFDKRQSLREEQDKREALRAMRYAN 155
>gi|148980252|ref|ZP_01815960.1| SsrA-binding protein [Vibrionales bacterium SWAT-3]
gi|145961346|gb|EDK26655.1| SsrA-binding protein [Vibrionales bacterium SWAT-3]
Length = 161
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 1 MAKNKSKSKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLREGKTNIAESYVYIR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S++E+ L+ + R+GMTLV +Y++
Sbjct: 61 DGEAFISGMTITPLTQASTHIVANPTRVRKLLMSRKELDNLFGRINREGMTLVATALYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ AKI + +A+GKK +DKR K++DW R K RI++ +
Sbjct: 121 -RSWAKIKVGVAKGKKLHDKRTDMKEKDWARDKARIMKSN 159
>gi|257093522|ref|YP_003167163.1| SsrA-binding protein [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
gi|257046046|gb|ACV35234.1| SsrA-binding protein [Candidatus Accumulibacter phosphatis clade
IIA str. UW-1]
Length = 148
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72
+ N+KA +++ I EAGIVL G EVK++R + +I ++Y + E++L +I P
Sbjct: 3 IVANKKAFHDFFIEEKIEAGIVLEGWEVKAIRGGRASIKEAYVVIRSGEVFLFGMHITPL 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL R+I +L V R G TLVP+ ++F +G K+++ LA+G
Sbjct: 63 LAASTHVKPDPVRTRKLLLHSRQIGKLIGQVERAGYTLVPLDLHF-QRGRIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE+EK+RDW R+K R++RE
Sbjct: 122 KKQFDKRESEKERDWVREKARLMREK 147
>gi|150015523|ref|YP_001307777.1| SsrA-binding protein [Clostridium beijerinckii NCIMB 8052]
gi|189046823|sp|A6LR41|SSRP_CLOB8 RecName: Full=SsrA-binding protein
gi|149901988|gb|ABR32821.1| SsrA-binding protein [Clostridium beijerinckii NCIMB 8052]
Length = 156
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 98/159 (61%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K N +++NRKAR++Y + + EAG+VL GTEVKS+R +VN+ D YA N
Sbjct: 1 MARKRNENS----LAENRKARHDYFVEEAMEAGLVLVGTEVKSIRNGRVNLKDCYADIYN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI++ N +I Y Q N FN P R RKLLL + EI RL V RDG TL+P+ +Y
Sbjct: 57 GEIFVKNMHISPYEQGNIFNVDPLRERKLLLHRDEIRRLDGLVSRDGYTLIPLSLYLKD- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ L + +GKKNYDKR++ ++ R R ++E N
Sbjct: 116 GKVKVALGVCKGKKNYDKRDSMLEKAHKRDMDRAIKEKN 154
>gi|71737867|ref|YP_276334.1| SsrA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|257482286|ref|ZP_05636327.1| SsrA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
gi|289626211|ref|ZP_06459165.1| SsrA-binding protein [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|289646938|ref|ZP_06478281.1| SsrA-binding protein [Pseudomonas syringae pv. aesculi str. 2250]
gi|298488432|ref|ZP_07006463.1| SsrA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|123635176|sp|Q48E54|SSRP_PSE14 RecName: Full=SsrA-binding protein
gi|71558420|gb|AAZ37631.1| SsrA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A]
gi|298157057|gb|EFH98146.1| SsrA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB
3335]
gi|320322551|gb|EFW78644.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. B076]
gi|320329980|gb|EFW85967.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race
4]
gi|330868223|gb|EGH02932.1| SsrA-binding protein [Pseudomonas syringae pv. aesculi str.
0893_23]
gi|330888683|gb|EGH21344.1| SsrA-binding protein [Pseudomonas syringae pv. mori str. 301020]
gi|330987032|gb|EGH85135.1| SsrA-binding protein [Pseudomonas syringae pv. lachrymans str.
M301315]
gi|331011475|gb|EGH91531.1| SsrA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528]
Length = 160
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL +I + P R RKLLL+KRE+ +L ++V++ G V + +Y+
Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKE 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K ++AL +GKK YDKR TE++RD DR+ R +R
Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156
>gi|227431093|ref|ZP_03913151.1| SsrA-binding protein [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227353133|gb|EEJ43301.1| SsrA-binding protein [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 154
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T N
Sbjct: 1 MAKKKQNTENY--LAQNRKARFNYAIAETFEAGISLTGTEIKSVRAGQITIGDGFVTIHN 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
LTN +I Y+Q N+FN P R R+LLL KREI L A + G+T+VP+K+Y
Sbjct: 59 GNALLTNVHISSYMQGNQFNVDPLRTRQLLLHKREIRVLEKATQEQGVTIVPLKVYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+ + + +GKK YDKRE KKRD +R+ R +
Sbjct: 118 GFAKVLVGIGRGKKKYDKREDIKKRDQERELSRRFKN 154
>gi|225175330|ref|ZP_03729325.1| SsrA-binding protein [Dethiobacter alkaliphilus AHT 1]
gi|225169082|gb|EEG77881.1| SsrA-binding protein [Dethiobacter alkaliphilus AHT 1]
Length = 151
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/148 (50%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KV + NRKA ++YHI +EAG+VLTGTEVKS+R KVN+ DSYA EN+EI++ N +I
Sbjct: 2 DKVFAKNRKAFHDYHIDEKYEAGMVLTGTEVKSIRAGKVNLKDSYARIENNEIFIHNLHI 61
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y Q NRFNH P R RKLL+ +R+I RL + G TL+P+++Y +KG KI++ALA
Sbjct: 62 SPYEQGNRFNHEPLRKRKLLMHRRQISRLIGLTKEKGYTLIPLQMY-ASKGFIKIEIALA 120
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR+ ++ R+ R +E
Sbjct: 121 RGKKQYDKRQALAAKEAKREVERAFKEK 148
>gi|169826078|ref|YP_001696236.1| SsrA-binding protein [Lysinibacillus sphaericus C3-41]
gi|238688202|sp|B1HWE9|SSRP_LYSSC RecName: Full=SsrA-binding protein
gi|168990566|gb|ACA38106.1| SsrA-binding protein [Lysinibacillus sphaericus C3-41]
Length = 155
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I + EAG+VLTGTE+KS+R K + DSY N E W++N
Sbjct: 3 KGSGKVLAQNKKAGHDYFIEDTIEAGMVLTGTEIKSIRAGKAQLKDSYVRITNGEAWISN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
++ + Q NRFNH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ +
Sbjct: 63 MHVSPFDQGNRFNHDPLRARKLLLHKKQIGELVGAVKRDGYTIVPLKMYIKD-GYAKLLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ +GKK+YDKR +K++ R+ R + N
Sbjct: 122 GVGKGKKDYDKRNDMRKKEAKREMERTFKSKN 153
>gi|254506717|ref|ZP_05118857.1| SsrA-binding protein [Vibrio parahaemolyticus 16]
gi|219550298|gb|EED27283.1| SsrA-binding protein [Vibrio parahaemolyticus 16]
Length = 161
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY
Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANIAESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|291522314|emb|CBK80607.1| SsrA-binding protein [Coprococcus catus GD/7]
Length = 154
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K++++N+KA ++Y I +EAGIVL GTEVKSLR+ K +I +S+ ++ EI++ +
Sbjct: 4 KGTKLIANNKKAYHDYFIEDKYEAGIVLHGTEVKSLRMGKCSIKESFIHADHGEIYIEHM 63
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y + N FN P R RKLLL KREI +L V + G T++P+++YF L K+ +
Sbjct: 64 HIAPYEKGNIFNKDPLRTRKLLLHKREITKLLGQVSQKGYTIMPLQVYFKDS-LVKVQIG 122
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK YDKRE K+D R+ R ++
Sbjct: 123 LARGKKLYDKREDIAKKDQRREAEREMKIR 152
>gi|327539721|gb|EGF26327.1| SsrA-binding protein [Rhodopirellula baltica WH47]
Length = 210
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 95/152 (62%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
P V++NRKA++ Y I+ S E G++L G+EVKS+R K+++ +++ N E+WL
Sbjct: 59 NQPNTTPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 118
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
S I Y A +NH PRR RKLL+ +E + G+TL+P+++YF+ +GLAK
Sbjct: 119 GSDIAHYNNAGMWNHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKCV 178
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +GKK +DKRET KKR+ DR R +R
Sbjct: 179 MGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 210
>gi|319957115|ref|YP_004168378.1| ssra-binding protein [Nitratifractor salsuginis DSM 16511]
gi|319419519|gb|ADV46629.1| SsrA-binding protein [Nitratifractor salsuginis DSM 16511]
Length = 153
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR+ Y I+ +EAGI L G+EVK+LR +VNI+D+Y F E+WL N++I
Sbjct: 4 KIIAQNKKARHEYEILEKYEAGIELQGSEVKALRQGRVNINDAYCRFIKGELWLLNAHIG 63
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
AN F R RKLLL K+++H LY V R+G+T+VP+ +YFN + AK+ +ALA
Sbjct: 64 HLDTANRHFARDERAPRKLLLHKKQLHSLYGKVSREGLTIVPLMLYFNERNRAKLSIALA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKRET K+R +R+ + ++ +
Sbjct: 124 KGKKLHDKRETLKRRTMEREAAQAMKNRD 152
>gi|283783518|ref|YP_003374272.1| SsrA-binding protein [Gardnerella vaginalis 409-05]
gi|297243835|ref|ZP_06927765.1| tmRNA-binding protein [Gardnerella vaginalis AMD]
gi|298252595|ref|ZP_06976389.1| tmRNA-binding protein [Gardnerella vaginalis 5-1]
gi|283441324|gb|ADB13790.1| SsrA-binding protein [Gardnerella vaginalis 409-05]
gi|296888256|gb|EFH26998.1| tmRNA-binding protein [Gardnerella vaginalis AMD]
gi|297532959|gb|EFH71843.1| tmRNA-binding protein [Gardnerella vaginalis 5-1]
Length = 165
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ K + V+ NRKA ++Y I +EAG+ LTGTEVKSLR + ++++S+
Sbjct: 1 MANKPAQD-GTVTVAQNRKAHHDYVIEDCYEAGLALTGTEVKSLREGRASLAESFVNIDR 59
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL + IPEYL NH P+R RKLLL EI +L G T+VP+++YF
Sbjct: 60 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAEIAKLSRQTEAKGYTVVPLRLYFKG 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 120 S-YVKVEIALARGKKEFDKRQALREEQDKREALREMRYRN 158
>gi|160945464|ref|ZP_02092690.1| hypothetical protein FAEPRAM212_02989 [Faecalibacterium prausnitzii
M21/2]
gi|158443195|gb|EDP20200.1| hypothetical protein FAEPRAM212_02989 [Faecalibacterium prausnitzii
M21/2]
gi|295105375|emb|CBL02919.1| SsrA-binding protein [Faecalibacterium prausnitzii SL3/3]
Length = 160
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ EN E+ +
Sbjct: 5 KERPATKSIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIENGELLV 64
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K+
Sbjct: 65 KGMHISPYDHGNLFNQDPMRVRRLLAHKSEIRRLHQQCKLQGYTLVPLSLYFK-HGRVKM 123
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++ L +GKK YDKR +RD R R ++ +
Sbjct: 124 EVGLCKGKKLYDKRADAAQRDAKRSIDRAVKSN 156
>gi|16801604|ref|NP_471872.1| SsrA-binding protein [Listeria innocua Clip11262]
gi|16804486|ref|NP_465971.1| SsrA-binding protein [Listeria monocytogenes EGD-e]
gi|46908621|ref|YP_015010.1| SsrA-binding protein [Listeria monocytogenes str. 4b F2365]
gi|47093650|ref|ZP_00231406.1| SsrA-binding protein [Listeria monocytogenes str. 4b H7858]
gi|47096835|ref|ZP_00234416.1| SsrA-binding protein [Listeria monocytogenes str. 1/2a F6854]
gi|116873812|ref|YP_850593.1| SsrA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|217963450|ref|YP_002349128.1| SsrA-binding protein [Listeria monocytogenes HCC23]
gi|224500110|ref|ZP_03668459.1| SsrA-binding protein [Listeria monocytogenes Finland 1988]
gi|224503406|ref|ZP_03671713.1| SsrA-binding protein [Listeria monocytogenes FSL R2-561]
gi|226224996|ref|YP_002759103.1| hypothetical protein Lm4b_02417 [Listeria monocytogenes Clip81459]
gi|254825430|ref|ZP_05230431.1| SsrA-binding protein [Listeria monocytogenes FSL J1-194]
gi|254828023|ref|ZP_05232710.1| smpB [Listeria monocytogenes FSL N3-165]
gi|254831129|ref|ZP_05235784.1| SsrA-binding protein [Listeria monocytogenes 10403S]
gi|254853549|ref|ZP_05242897.1| SsrA-binding protein [Listeria monocytogenes FSL R2-503]
gi|254900414|ref|ZP_05260338.1| SsrA-binding protein [Listeria monocytogenes J0161]
gi|254913347|ref|ZP_05263359.1| SsrA-binding protein [Listeria monocytogenes J2818]
gi|254933126|ref|ZP_05266485.1| SsrA-binding protein [Listeria monocytogenes HPB2262]
gi|254937728|ref|ZP_05269425.1| SsrA-binding protein [Listeria monocytogenes F6900]
gi|254993185|ref|ZP_05275375.1| SsrA-binding protein [Listeria monocytogenes FSL J2-064]
gi|255017266|ref|ZP_05289392.1| SsrA-binding protein [Listeria monocytogenes FSL F2-515]
gi|255027029|ref|ZP_05299015.1| SsrA-binding protein [Listeria monocytogenes FSL J2-003]
gi|255028117|ref|ZP_05300068.1| SsrA-binding protein [Listeria monocytogenes LO28]
gi|255520585|ref|ZP_05387822.1| SsrA-binding protein [Listeria monocytogenes FSL J1-175]
gi|284802887|ref|YP_003414752.1| SsrA-binding protein [Listeria monocytogenes 08-5578]
gi|284996028|ref|YP_003417796.1| SsrA-binding protein [Listeria monocytogenes 08-5923]
gi|289435708|ref|YP_003465580.1| SsrA-binding protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290893674|ref|ZP_06556655.1| SsrA-binding protein [Listeria monocytogenes FSL J2-071]
gi|300765223|ref|ZP_07075208.1| SsrA-binding protein [Listeria monocytogenes FSL N1-017]
gi|315283560|ref|ZP_07871718.1| SsrA-binding protein [Listeria marthii FSL S4-120]
gi|54039640|sp|P66861|SSRP_LISIN RecName: Full=SsrA-binding protein
gi|54042227|sp|P66860|SSRP_LISMO RecName: Full=SsrA-binding protein
gi|61216553|sp|Q71WX8|SSRP_LISMF RecName: Full=SsrA-binding protein
gi|123464150|sp|A0ALD2|SSRP_LISW6 RecName: Full=SsrA-binding protein
gi|254778365|sp|B8DDA8|SSRP_LISMH RecName: Full=SsrA-binding protein
gi|259511425|sp|C1KY87|SSRP_LISMC RecName: Full=SsrA-binding protein
gi|16411936|emb|CAD00526.1| lmo2448 [Listeria monocytogenes EGD-e]
gi|16415064|emb|CAC97769.1| lin2542 [Listeria innocua Clip11262]
gi|46881893|gb|AAT05187.1| SsrA-binding protein [Listeria monocytogenes serotype 4b str.
F2365]
gi|47014812|gb|EAL05764.1| SsrA-binding protein [Listeria monocytogenes str. 1/2a F6854]
gi|47017985|gb|EAL08762.1| SsrA-binding protein [Listeria monocytogenes str. 4b H7858]
gi|116742690|emb|CAK21814.1| SsrA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|217332720|gb|ACK38514.1| SsrA-binding protein [Listeria monocytogenes HCC23]
gi|225877458|emb|CAS06172.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258600407|gb|EEW13732.1| smpB [Listeria monocytogenes FSL N3-165]
gi|258606922|gb|EEW19530.1| SsrA-binding protein [Listeria monocytogenes FSL R2-503]
gi|258610331|gb|EEW22939.1| SsrA-binding protein [Listeria monocytogenes F6900]
gi|284058449|gb|ADB69390.1| SsrA-binding protein [Listeria monocytogenes 08-5578]
gi|284061495|gb|ADB72434.1| SsrA-binding protein [Listeria monocytogenes 08-5923]
gi|289171952|emb|CBH28498.1| SsrA-binding protein [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|290556747|gb|EFD90280.1| SsrA-binding protein [Listeria monocytogenes FSL J2-071]
gi|293584684|gb|EFF96716.1| SsrA-binding protein [Listeria monocytogenes HPB2262]
gi|293591352|gb|EFF99686.1| SsrA-binding protein [Listeria monocytogenes J2818]
gi|293594673|gb|EFG02434.1| SsrA-binding protein [Listeria monocytogenes FSL J1-194]
gi|300514044|gb|EFK41106.1| SsrA-binding protein [Listeria monocytogenes FSL N1-017]
gi|307571976|emb|CAR85155.1| SsrA-binding protein [Listeria monocytogenes L99]
gi|313606980|gb|EFR83548.1| SsrA-binding protein [Listeria monocytogenes FSL F2-208]
gi|313612790|gb|EFR86774.1| SsrA-binding protein [Listeria marthii FSL S4-120]
gi|313617317|gb|EFR89752.1| SsrA-binding protein [Listeria innocua FSL S4-378]
gi|313632053|gb|EFR99153.1| SsrA-binding protein [Listeria seeligeri FSL N1-067]
gi|313636431|gb|EFS02189.1| SsrA-binding protein [Listeria seeligeri FSL S4-171]
gi|328465313|gb|EGF36570.1| SsrA-binding protein [Listeria monocytogenes 1816]
gi|328471363|gb|EGF42260.1| SsrA-binding protein [Listeria monocytogenes 220]
Length = 154
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ N+KAR++Y I +FEAGIVL GTE+KS+R ++VN+ DSYA + EI+L N +I
Sbjct: 7 KLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL K++I RL + G ++VP+K+Y G AK+ + +A+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKD-GYAKVLIGVAR 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR+ K+++ R R +E
Sbjct: 126 GKKKYDKRQDLKQKEAKRDIERAFKER 152
>gi|319650505|ref|ZP_08004645.1| SsrA-binding protein [Bacillus sp. 2_A_57_CT2]
gi|317397686|gb|EFV78384.1| SsrA-binding protein [Bacillus sp. 2_A_57_CT2]
Length = 155
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DSYA +N+EI+L ++
Sbjct: 7 KMVAQNKKAYHDYAIEETYEAGIVLQGTEIKSIRAGKVNLKDSYARIQNNEIYLFGMHVS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL ++EI +L + G ++VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKEISKLIGESKEVGYSIVPLKMYLK-NGYAKVLIGLAR 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE KK++ R+ R RE
Sbjct: 126 GKKKYDKREDLKKKEAKREVERAFRER 152
>gi|114565846|ref|YP_753000.1| SsrA-binding protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|122319016|sp|Q0B075|SSRP_SYNWW RecName: Full=SsrA-binding protein
gi|114336781|gb|ABI67629.1| SsrA-binding protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
Length = 157
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 85/159 (53%), Positives = 107/159 (67%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + K V DNR+ARY YHI + EAG+VL GTEVKSLR+ K N+ D+YA ++
Sbjct: 1 MGKKGK---GIKPVVDNRRARYEYHIKENLEAGLVLVGTEVKSLRMGKANLRDAYAVVKD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EIW+ N +I Y + N+FNH P R +KLLL +REI+RLYA R G+TL+P+KIYF
Sbjct: 58 GEIWVNNFHISPYDKGNQFNHDPLRPKKLLLHRREINRLYALQREKGLTLIPLKIYFKE- 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+DLA+A GKK YDKRE RD R R L+E N
Sbjct: 117 GRAKMDLAVAVGKKLYDKREDIASRDAWRDMERSLKERN 155
>gi|38233356|ref|NP_939123.1| SsrA-binding protein [Corynebacterium diphtheriae NCTC 13129]
gi|61216545|sp|Q6NIL8|SSRP_CORDI RecName: Full=SsrA-binding protein
gi|38199616|emb|CAE49272.1| SsrA-binding protein [Corynebacterium diphtheriae]
Length = 163
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + V++ NRKAR++Y I+ +FE GIVL GTE+KS+R KV+++DS+AT +
Sbjct: 1 MAKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDE 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E W+ N IP Y + + NH P R RKLLL +REI L VR TLVP+ +YF
Sbjct: 61 GEAWIRNLNIPIYSRGSWTNHSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKE- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++L LAQGK++YDKR+ K+R +R+ R L
Sbjct: 120 GRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRR 157
>gi|312109558|ref|YP_003987874.1| SsrA-binding protein [Geobacillus sp. Y4.1MC1]
gi|311214659|gb|ADP73263.1| SsrA-binding protein [Geobacillus sp. Y4.1MC1]
Length = 155
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DS+A E E++L N +I
Sbjct: 7 KLIAQNKKAHHDYFIEETYEAGIVLKGTEIKSIRAGKVNLKDSFAKVEKGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK+ L + +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPIKLYIK-NGFAKVLLGVGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ R+ R RE
Sbjct: 126 GKKKYDKREDMKRKEAQREIERAFRER 152
>gi|319790654|ref|YP_004152287.1| SsrA-binding protein [Thermovibrio ammonificans HB-1]
gi|317115156|gb|ADU97646.1| SsrA-binding protein [Thermovibrio ammonificans HB-1]
Length = 153
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 98/144 (68%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA Y+Y I+ +EAGI L GTEVKSLR K N+ DS+ EN E +L N+YI Y
Sbjct: 9 IKNKKAFYDYDILERYEAGIELKGTEVKSLREGKANLRDSFVRIENGEAFLFNAYIAPYT 68
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
N FNH P R R+LLL KREI RL V G+T+VP++IYFN +G AK+++AL +G+K
Sbjct: 69 HGNLFNHEPTRKRRLLLHKREIKRLAGKVAEKGLTIVPLRIYFNERGKAKVEIALVKGRK 128
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKRE K+R+ +R+ + ++ +
Sbjct: 129 KYDKREAIKRRELEREAQKAMKFY 152
>gi|229062767|ref|ZP_04200072.1| hypothetical protein bcere0026_48290 [Bacillus cereus AH603]
gi|229169828|ref|ZP_04297525.1| hypothetical protein bcere0007_47690 [Bacillus cereus AH621]
gi|228613678|gb|EEK70806.1| hypothetical protein bcere0007_47690 [Bacillus cereus AH621]
gi|228716527|gb|EEL68230.1| hypothetical protein bcere0026_48290 [Bacillus cereus AH603]
Length = 164
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 16 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 75
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L + G L+P++IY G AK+ L LA+
Sbjct: 76 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGYAKETGYALIPVRIYLK-NGFAKMALGLAK 134
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R+ R+
Sbjct: 135 GKKQYDKRHDLKEKEAKREIARVFRDR 161
>gi|256848061|ref|ZP_05553505.1| SsrA-binding protein [Lactobacillus coleohominis 101-4-CHN]
gi|256715121|gb|EEU30098.1| SsrA-binding protein [Lactobacillus coleohominis 101-4-CHN]
Length = 157
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P +V+ N+KAR++Y ++ ++EAG+VLTGTE+KS+R ++N+ D YA F N
Sbjct: 1 MAGKKHQAPNDNLVAQNKKARHDYAVMATYEAGMVLTGTEIKSVRARRINLKDGYAQFHN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N +I EY FNH P RNRKLLL K+E+ +L + G+TL+P+K+Y
Sbjct: 61 GELWLMNVHISEYSNGTIFNHDPLRNRKLLLHKKELKKLAGEMSAKGVTLIPLKVYLK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L LA+GK YDKR KKR+ +RQ R+++ +
Sbjct: 120 GFAKVLLGLAKGKHEYDKRNDIKKREQERQIERVMKHY 157
>gi|269962385|ref|ZP_06176735.1| SsrA-binding protein [Vibrio harveyi 1DA3]
gi|269832881|gb|EEZ86990.1| SsrA-binding protein [Vibrio harveyi 1DA3]
Length = 161
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
KS+ ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY +
Sbjct: 3 KKKSKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANIAESYVFMRDG 62
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ +
Sbjct: 63 EAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS-R 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
KI + +A+GKK +DKR K++DW R+K R+++
Sbjct: 122 SWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|254455792|ref|ZP_05069221.1| SsrA-binding protein [Candidatus Pelagibacter sp. HTCC7211]
gi|207082794|gb|EDZ60220.1| SsrA-binding protein [Candidatus Pelagibacter sp. HTCC7211]
Length = 156
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 78/155 (50%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + N K++ NRKA +NY EAGIVL G+E+KS+R KVNI++SYA +N E
Sbjct: 1 MNKKTNSGLKIICLNRKASFNYFFEDLLEAGIVLKGSEIKSIRDGKVNIAESYAVEKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+ L N++I +Y QA+ +H P RKLLL+KREI++L ++RDG T+VP K+YF KG
Sbjct: 61 LILINAHIAQYKQASYSSHNPTDERKLLLNKREINKLIGKMQRDGFTIVPTKMYFK-KGK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AKI+LA+A+GKK +DKR T+K RDW+R K R +R+
Sbjct: 120 AKIELAVAKGKKQFDKRATKKNRDWNRDKARYIRK 154
>gi|295401517|ref|ZP_06811486.1| SsrA-binding protein [Geobacillus thermoglucosidasius C56-YS93]
gi|294976429|gb|EFG52038.1| SsrA-binding protein [Geobacillus thermoglucosidasius C56-YS93]
Length = 155
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/151 (46%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+++ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DS+A E E++L N
Sbjct: 3 KDEGKLIAQNKKAHHDYFIEETYEAGIVLKGTEIKSIRAGKVNLKDSFAKVEKGEVFLHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK+ L
Sbjct: 63 MHISPYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPIKLYIK-NGFAKVLL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +GKK YDKRE K+++ R+ R RE
Sbjct: 122 GVGKGKKKYDKREDMKRKEAQREIERAFRER 152
>gi|32473366|ref|NP_866360.1| SsrA-binding protein [Rhodopirellula baltica SH 1]
gi|32398046|emb|CAD78141.1| ssrA-binding protein [Rhodopirellula baltica SH 1]
Length = 210
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 95/152 (62%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
P V++NRKA++ Y I+ S E G++L G+EVKS+R K+++ +++ N E+WL
Sbjct: 59 NQPNITPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 118
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
S I Y A +NH PRR RKLL+ +E + G+TL+P+++YF+ +GLAK
Sbjct: 119 GSDIAHYNNAGMWNHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKCV 178
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +GKK +DKRET KKR+ DR R +R
Sbjct: 179 MGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 210
>gi|227552052|ref|ZP_03982101.1| SsrA-binding protein SmpB [Enterococcus faecium TX1330]
gi|293378225|ref|ZP_06624394.1| SsrA-binding protein [Enterococcus faecium PC4.1]
gi|293556423|ref|ZP_06675004.1| SsrA-binding protein [Enterococcus faecium E1039]
gi|293572432|ref|ZP_06683412.1| SsrA-binding protein [Enterococcus faecium E980]
gi|294617574|ref|ZP_06697204.1| SsrA-binding protein [Enterococcus faecium E1679]
gi|294623197|ref|ZP_06702075.1| SsrA-binding protein [Enterococcus faecium U0317]
gi|227178805|gb|EEI59777.1| SsrA-binding protein SmpB [Enterococcus faecium TX1330]
gi|291596180|gb|EFF27443.1| SsrA-binding protein [Enterococcus faecium E1679]
gi|291597392|gb|EFF28565.1| SsrA-binding protein [Enterococcus faecium U0317]
gi|291601490|gb|EFF31761.1| SsrA-binding protein [Enterococcus faecium E1039]
gi|291607494|gb|EFF36836.1| SsrA-binding protein [Enterococcus faecium E980]
gi|292643089|gb|EFF61230.1| SsrA-binding protein [Enterococcus faecium PC4.1]
Length = 154
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I
Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRNGEAFLHNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITVVPLKVYIR-NGYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK+YDKRE K++D DRQ R L+ +
Sbjct: 126 GKKSYDKREDLKRKDIDRQIDRTLKNFS 153
>gi|313891891|ref|ZP_07825493.1| SsrA-binding protein [Dialister microaerophilus UPII 345-E]
gi|313119666|gb|EFR42856.1| SsrA-binding protein [Dialister microaerophilus UPII 345-E]
Length = 156
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K P + NRKA ++Y I ++EAGIVLTGTEVKS+R ++NI DSYA E
Sbjct: 1 MIKKEFTLPS----AVNRKAYHDYFIHDTYEAGIVLTGTEVKSIRSGRMNIKDSYARIEK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N++I Y Q NRFNH P R RKLL+ K+E+++L ++ G TL+P+KIYFN +
Sbjct: 57 GELWLWNAHISPYEQGNRFNHDPLRTRKLLVHKKELNKLEIMMKTKGYTLIPLKIYFN-R 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K + +A GKK +DKR ++ R R L+E N
Sbjct: 116 GKIKCLIGVATGKKLHDKRRDIAEKSVKRDLDRRLKERN 154
>gi|256372519|ref|YP_003110343.1| SsrA-binding protein [Acidimicrobium ferrooxidans DSM 10331]
gi|256009103|gb|ACU54670.1| SsrA-binding protein [Acidimicrobium ferrooxidans DSM 10331]
Length = 171
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
K++ +V++ NR+AR++Y ++ +FEAGIVL G+EVK++R V + D+YA + E
Sbjct: 9 AKAQQLGGVRVLAQNRRARHDYDVLETFEAGIVLVGSEVKAVREGHVQLRDAYARIRDGE 68
Query: 63 IWLTNSYIPEYLQANRFNHYPR-RNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L + I Y A F + R RKLLL + EI RL + ++ +TL+P+ +Y G
Sbjct: 69 LFLFQAVISPYRHATGFGTHVTDRPRKLLLHRDEIDRLRGRLEQERLTLIPLSLYLRD-G 127
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K++LALA+G+ YDKR RD R+ R+ +
Sbjct: 128 LVKVELALAKGRTLYDKRHVLATRDAQREVERLRSRY 164
>gi|303327972|ref|ZP_07358411.1| SsrA-binding protein [Desulfovibrio sp. 3_1_syn3]
gi|302861798|gb|EFL84733.1| SsrA-binding protein [Desulfovibrio sp. 3_1_syn3]
Length = 151
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
P ++ N+KAR+ Y + EAGI LTG EVKS+R KVN DSY F+ E WL
Sbjct: 2 SQKTPPSTIAANKKARHLYELSEFLEAGIALTGPEVKSIRAGKVNFIDSYVEFKRGEAWL 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ ++ Y A P R R+LLL REI +L V + G+T+VP+++Y +G K+
Sbjct: 62 LSLHVAPYANAGYAPQEPDRPRRLLLHAREIAKLAGLVAQKGLTVVPVRVYLK-RGKVKL 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
++AL +GKK +D R+T K+R +R R L
Sbjct: 121 EIALGRGKKLHDHRDTLKRRAEERDLAREL 150
>gi|254518106|ref|ZP_05130162.1| SsrA-binding protein [Clostridium sp. 7_2_43FAA]
gi|226911855|gb|EEH97056.1| SsrA-binding protein [Clostridium sp. 7_2_43FAA]
Length = 156
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+++NRKAR++Y + + EAGI L GTEVKS+R K N+ +SYA EN EI +
Sbjct: 3 RKKNSNTLAENRKARHDYFVEETIEAGIALVGTEVKSIRAGKCNLKESYADVENGEITIK 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y Q N FN P R RKLLL K +I R V + G TLVP+ +Y G K+
Sbjct: 63 GMHISPYEQGNIFNVDPLRERKLLLHKEQISRFAGLVSQQGFTLVPLSLYLKD-GKVKVA 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L L +GKKNYDKR++ ++ R R L+
Sbjct: 122 LGLCRGKKNYDKRDSMLEKAHKRDIERQLKN 152
>gi|160871526|ref|ZP_02061658.1| SsrA-binding protein [Rickettsiella grylli]
gi|159120325|gb|EDP45663.1| SsrA-binding protein [Rickettsiella grylli]
Length = 158
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ S+ + ++ NR+AR++Y + +S EAG+VL G EVKSLR + +++SY +N E
Sbjct: 1 MNSKKALQEATIALNRRARHDYFVEQSTEAGLVLQGWEVKSLRSGRAQLTESYVVIKNGE 60
Query: 63 IWLTNSYIPEYL--QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
WL +I + + R RKLLL++RE+++L + R G TL+ +K+Y+
Sbjct: 61 AWLLGCHITPISTVSTHHSHPDSTRTRKLLLNERELNKLSGCIMRKGYTLIALKLYWK-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
K+++ LA+GK+ +DKR + K++DW R+K R+ R
Sbjct: 120 NRVKLEVGLAKGKQAHDKRASLKEKDWKREKLRLGR 155
>gi|260438445|ref|ZP_05792261.1| SsrA-binding protein [Butyrivibrio crossotus DSM 2876]
gi|292809034|gb|EFF68239.1| SsrA-binding protein [Butyrivibrio crossotus DSM 2876]
Length = 156
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ + K+V++N+KA ++Y I +EAGI L GTEVKS+R+ K +I +SY EN E++
Sbjct: 2 EKKDNGFKLVANNKKAYFDYFIEDKWEAGIALYGTEVKSIRMGKASIKESYIKIENGEVF 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ N +I Y + N FN P R RKLLL K EI+++ G TLVP++IY GL K
Sbjct: 62 IYNMHISPYEKGNIFNRDPVRVRKLLLHKAEINKIAGKTAEKGYTLVPLQIYIKD-GLCK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++ L +GKK YDKR++ K+D R+ R + N
Sbjct: 121 VEIGLGKGKKLYDKRDSIAKKDVRRENERDFKIKN 155
>gi|190573953|ref|YP_001971798.1| SsrA-binding protein [Stenotrophomonas maltophilia K279a]
gi|229559894|sp|B2FMX5|SSRP_STRMK RecName: Full=SsrA-binding protein
gi|190011875|emb|CAQ45496.1| putative SsrA-binding protein [Stenotrophomonas maltophilia K279a]
Length = 167
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 7/165 (4%)
Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K++ K ++ N++AR+ YHI FEAG+ L G EVKS+R + NI D+Y
Sbjct: 1 MSKNSGKDKAKSATANKTIALNKRARHEYHIEERFEAGLALQGWEVKSIRAGRGNIIDAY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A ++ EI+L + I +Q + RR RKLLL + EI +L V RDG T+VP
Sbjct: 61 AYVKHGEIFLIGAQITPLIQASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y++ K K+++ALA+GK+ +DKR+ K RDW +K R++R N
Sbjct: 121 MYWS-KNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVMRRGN 164
>gi|319946547|ref|ZP_08020782.1| SsrA-binding protein [Streptococcus australis ATCC 700641]
gi|319747293|gb|EFV99551.1| SsrA-binding protein [Streptococcus australis ATCC 700641]
Length = 155
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKASHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQDPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++++N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKQYN 153
>gi|254820374|ref|ZP_05225375.1| SsrA-binding protein [Mycobacterium intracellulare ATCC 13950]
Length = 169
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
+ + G K VV+ NRKAR+NY I+ SFEAG+ L GTEVKSLR + +++D++AT ++
Sbjct: 8 AKAAGGKGGSKQVVATNRKARHNYSIIESFEAGVALQGTEVKSLREGQASLADAFATIDD 67
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N YI EY + NH PRRNRKLLL +++I RL +R + L+P+ +YF+
Sbjct: 68 GEVWLRNLYIAEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE- 126
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GK+ YDKR+ +RD R+ R L
Sbjct: 127 GKVKVELALARGKRAYDKRQDMAQRDAQREVVRELGRR 164
>gi|256832105|ref|YP_003160832.1| SsrA-binding protein [Jonesia denitrificans DSM 20603]
gi|256685636|gb|ACV08529.1| SsrA-binding protein [Jonesia denitrificans DSM 20603]
Length = 176
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 99/155 (63%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEI 63
P ++++++N+KAR++Y I +EAG+VL+GTEVK+LR + ++ D + N E
Sbjct: 20 KDSAPRRELIANNKKARHDYLIEDVYEAGLVLSGTEVKALRAGRASLIDGWVSIDHNQEA 79
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL ++I EY NH PRR RKLLL ++E+ RL G T++P+++YF G A
Sbjct: 80 WLEGAHISEYSHGTWTNHAPRRKRKLLLHRQELIRLADRSTDKGYTIIPLQLYFLD-GRA 138
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++A+A+GK+ +DKR+ ++R + + HR +R
Sbjct: 139 KVEIAVARGKREFDKRQALRERQDNLEAHRAMRHR 173
>gi|317406244|gb|EFV86488.1| SsrA-binding protein [Achromobacter xylosoxidans C54]
Length = 155
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + E++L ++
Sbjct: 3 IIDNRKATHDYFIEDRYEAGLVLQGWEVKAIRDGRVQLKESYVIVRDGELFLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+T +++DW R+K RI++
Sbjct: 122 KKLFDKRDTAREKDWQREKERIMKH 146
>gi|115352083|ref|YP_773922.1| SsrA-binding protein [Burkholderia ambifaria AMMD]
gi|122322856|sp|Q0BE35|SSRP_BURCM RecName: Full=SsrA-binding protein
gi|115282071|gb|ABI87588.1| SsrA-binding protein [Burkholderia ambifaria AMMD]
Length = 148
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G
Sbjct: 63 PEASTHIHPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRETEKKR W+R+K RI+R
Sbjct: 122 KKLHDKRETEKKRHWEREKARIMR 145
>gi|260776593|ref|ZP_05885488.1| tmRNA-binding protein SmpB [Vibrio coralliilyticus ATCC BAA-450]
gi|260607816|gb|EEX34081.1| tmRNA-binding protein SmpB [Vibrio coralliilyticus ATCC BAA-450]
Length = 161
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY
Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGMELQGWEVKALREGKANIAESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L+ + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRINREGMTLAALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|187934027|ref|YP_001887236.1| SsrA-binding protein [Clostridium botulinum B str. Eklund 17B]
gi|188589393|ref|YP_001922179.1| SsrA-binding protein [Clostridium botulinum E3 str. Alaska E43]
gi|251779935|ref|ZP_04822855.1| SsrA-binding protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|238689628|sp|B2UY12|SSRP_CLOBA RecName: Full=SsrA-binding protein
gi|238691656|sp|B2TPV9|SSRP_CLOBB RecName: Full=SsrA-binding protein
gi|187722180|gb|ACD23401.1| SsrA-binding protein [Clostridium botulinum B str. Eklund 17B]
gi|188499674|gb|ACD52810.1| SsrA-binding protein [Clostridium botulinum E3 str. Alaska E43]
gi|243084250|gb|EES50140.1| SsrA-binding protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 156
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K N +++NRKAR+ Y I + EAGI L GTEVKS+R + N+ +SYA N
Sbjct: 1 MVRKKSSN----TLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI++ + +I Y Q N FN P R +KLLL K EIHRL V RDG TL+P+ +Y A
Sbjct: 57 GEIFILSMHISPYEQGNIFNVEPLREKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKA- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ L + +GKK+YDKR++ ++ +R+ R L+E +
Sbjct: 116 GKVKVALGICKGKKDYDKRDSMLEKAHNREMQRALKERS 154
>gi|328952479|ref|YP_004369813.1| SsrA-binding protein [Desulfobacca acetoxidans DSM 11109]
gi|328452803|gb|AEB08632.1| SsrA-binding protein [Desulfobacca acetoxidans DSM 11109]
Length = 153
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K++ NRKA ++Y I EAGIVL G EVKS+R+ KVNI+D +A E++L
Sbjct: 2 KKDAVKIICQNRKAYFDYFIDDVIEAGIVLIGPEVKSVRLGKVNINDGFARIHKGEVYLH 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N++I Y ++ P R RKLLL ++EI RL G TL+P+K+YF KI
Sbjct: 62 NTHISPYPFTPLDSYDPTRTRKLLLHRQEIKRLIGKTEEKGYTLIPLKLYFRDH-RIKIA 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L LA+GKK YDKRET ++RD +R+ R +
Sbjct: 121 LGLAKGKKKYDKRETIRRRDEEREMQRQKKNR 152
>gi|262376640|ref|ZP_06069868.1| SsrA-binding protein [Acinetobacter lwoffii SH145]
gi|262308350|gb|EEY89485.1| SsrA-binding protein [Acinetobacter lwoffii SH145]
Length = 159
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 1 MSLKS--RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ S ++ N++AR++Y I FEAG+ L G EVKS+R ++ I +SY TF
Sbjct: 1 MAKASIVVKKNNGGTIALNKRARHDYFIEEKFEAGLSLKGWEVKSMRAGRMTIVESYITF 60
Query: 59 ENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+N E +L + + P + R RKLLL++REI +L A+ + G + VP+ Y+
Sbjct: 61 KNGEAFLFGAQVQPLLSASTHVVPEATRTRKLLLNRREIEKLMGAINQKGYSCVPLACYW 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
AK+++AL +GK+ +DKR TEK RDW R K RI
Sbjct: 121 KGPH-AKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 157
>gi|257886786|ref|ZP_05666439.1| SmpB protein [Enterococcus faecium 1,141,733]
gi|257822840|gb|EEV49772.1| SmpB protein [Enterococcus faecium 1,141,733]
Length = 159
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N
Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y
Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITVVPLKVYIR-N 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+ + LA+GKK+YDKRE K++D DRQ R L+ +
Sbjct: 120 GYAKVLIGLAKGKKSYDKREELKRKDIDRQIDRTLKNFS 158
>gi|163942812|ref|YP_001647696.1| SsrA-binding protein [Bacillus weihenstephanensis KBAB4]
gi|229014285|ref|ZP_04171404.1| hypothetical protein bmyco0001_46880 [Bacillus mycoides DSM 2048]
gi|229135928|ref|ZP_04264690.1| hypothetical protein bcere0014_48060 [Bacillus cereus BDRD-ST196]
gi|226706519|sp|A9VQ41|SSRP_BACWK RecName: Full=SsrA-binding protein
gi|163865009|gb|ABY46068.1| SsrA-binding protein [Bacillus weihenstephanensis KBAB4]
gi|228647541|gb|EEL03614.1| hypothetical protein bcere0014_48060 [Bacillus cereus BDRD-ST196]
gi|228746885|gb|EEL96769.1| hypothetical protein bmyco0001_46880 [Bacillus mycoides DSM 2048]
Length = 155
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++E G+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEVGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L + G LVP++IY G AK+ L LA+
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGYAKETGYALVPVRIYLK-NGFAKMALGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++ R+ R+ R+
Sbjct: 126 GKKQYDKRHDLKEKEAKREIARVFRDR 152
>gi|323488675|ref|ZP_08093917.1| SsrA-binding protein [Planococcus donghaensis MPA1U2]
gi|323397693|gb|EGA90497.1| SsrA-binding protein [Planococcus donghaensis MPA1U2]
Length = 154
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA +++ I + EAGIVL GTE+KS R KV + DS+ N E W++N +I
Sbjct: 7 KVIAQNKKAGFDFFIEETIEAGIVLQGTEIKSARNGKVQLKDSFVRIRNGEAWISNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N+FNH P R+RKLLL K++I L A + G ++P+K+Y G AK+ L + +
Sbjct: 67 PYDQGNQFNHDPTRSRKLLLHKKQIANLLAHSKVQGSAIIPLKMYLKD-GFAKVLLGVGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKKNYDKRE KK+D R+ R ++E N
Sbjct: 126 GKKNYDKREDLKKKDAKREIDRAMKERN 153
>gi|323499779|ref|ZP_08104738.1| SsrA-binding protein [Vibrio sinaloensis DSM 21326]
gi|323315020|gb|EGA68072.1| SsrA-binding protein [Vibrio sinaloensis DSM 21326]
Length = 161
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY
Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGMELQGWEVKALRQGKANIAESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ K+ + +A+GKK +DKR K++DW R+K R+++
Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|325690763|gb|EGD32764.1| SsrA-binding protein [Streptococcus sanguinis SK115]
Length = 155
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRTARINLKDGFAQIKNGEAWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K +I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKNQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R ++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARQMKNFN 153
>gi|239815735|ref|YP_002944645.1| SsrA-binding protein [Variovorax paradoxus S110]
gi|239802312|gb|ACS19379.1| SsrA-binding protein [Variovorax paradoxus S110]
Length = 158
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++DN+KA YNY FEAGIVL G EVKSLR KV ++D Y +
Sbjct: 1 MATKKQDTSSR--IADNKKAAYNYFFEERFEAGIVLEGWEVKSLREGKVQLTDGYVVIRD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+++ I + N R +KLLL K EI RL V + G TLVP+ +++ A
Sbjct: 59 GELFVVGLQINPLKSASTHVNPDSIRTKKLLLHKEEIRRLVGKVEQKGYTLVPLNLHWKA 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K ++ALA+GK +DKR+T K R+ R+ R ++ +
Sbjct: 119 -GKVKCEIALAKGKAEHDKRDTIKDREGKREVERAMKSRS 157
>gi|325263486|ref|ZP_08130220.1| SsrA-binding protein [Clostridium sp. D5]
gi|324031195|gb|EGB92476.1| SsrA-binding protein [Clostridium sp. D5]
Length = 154
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KA ++Y I+ +E GIVL GTEVKSLR+ + +I +++ EN E+++
Sbjct: 3 KTEGKLIANNKKAYHDYFILEKYETGIVLHGTEVKSLRMGQCSIKEAFIRIENGEMFIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K EI++L+ ++ G TLVP+++YF+ L KI++
Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHKNEINKLFGKMKEKGNTLVPLRVYFSGS-LVKIEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GKK YDKR+ K+D R+ R + N
Sbjct: 122 GLAKGKKLYDKRDDIAKKDQKREAQREFKIRN 153
>gi|260585035|ref|ZP_05852777.1| SsrA-binding protein [Granulicatella elegans ATCC 700633]
gi|260157231|gb|EEW92305.1| SsrA-binding protein [Granulicatella elegans ATCC 700633]
Length = 154
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KV++ NRKA ++Y I+ + EAG+VLTGTE+KS+R +++N+ D Y +F+N E +L
Sbjct: 3 KGTDNKVLAQNRKANHDYTILDTIEAGLVLTGTEIKSVRQARMNLKDGYCSFKNGEAFLV 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I + Q N FNH P R RKLLL K++I L VR+ G T+VP+K+Y G+AK+
Sbjct: 63 GVHISPFEQGNIFNHDPLRTRKLLLHKKQIQMLEQEVRQAGNTVVPLKVYIK-NGVAKLL 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +A+GKKNYDKRE K++D R R L+ +
Sbjct: 122 IGIAKGKKNYDKREALKQKDIKRDVQRELKNY 153
>gi|69247782|ref|ZP_00604487.1| SmpB protein [Enterococcus faecium DO]
gi|258616683|ref|ZP_05714453.1| SsrA-binding protein [Enterococcus faecium DO]
gi|293560035|ref|ZP_06676539.1| SsrA-binding protein [Enterococcus faecium E1162]
gi|293568731|ref|ZP_06680046.1| SsrA-binding protein [Enterococcus faecium E1071]
gi|314939619|ref|ZP_07846846.1| SsrA-binding protein [Enterococcus faecium TX0133a04]
gi|314941245|ref|ZP_07848141.1| SsrA-binding protein [Enterococcus faecium TX0133C]
gi|314949822|ref|ZP_07853132.1| SsrA-binding protein [Enterococcus faecium TX0082]
gi|314953386|ref|ZP_07856311.1| SsrA-binding protein [Enterococcus faecium TX0133A]
gi|314993463|ref|ZP_07858828.1| SsrA-binding protein [Enterococcus faecium TX0133B]
gi|314997314|ref|ZP_07862279.1| SsrA-binding protein [Enterococcus faecium TX0133a01]
gi|68194711|gb|EAN09193.1| SmpB protein [Enterococcus faecium DO]
gi|291588691|gb|EFF20524.1| SsrA-binding protein [Enterococcus faecium E1071]
gi|291605902|gb|EFF35332.1| SsrA-binding protein [Enterococcus faecium E1162]
gi|313588605|gb|EFR67450.1| SsrA-binding protein [Enterococcus faecium TX0133a01]
gi|313592128|gb|EFR70973.1| SsrA-binding protein [Enterococcus faecium TX0133B]
gi|313594579|gb|EFR73424.1| SsrA-binding protein [Enterococcus faecium TX0133A]
gi|313599969|gb|EFR78812.1| SsrA-binding protein [Enterococcus faecium TX0133C]
gi|313641159|gb|EFS05739.1| SsrA-binding protein [Enterococcus faecium TX0133a04]
gi|313643895|gb|EFS08475.1| SsrA-binding protein [Enterococcus faecium TX0082]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I
Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRNGEAFLHNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-NGYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK+YDKRE K++D DRQ R L+ +
Sbjct: 126 GKKSYDKREDLKRKDIDRQIDRTLKNFS 153
>gi|193216001|ref|YP_001997200.1| SsrA-binding protein [Chloroherpeton thalassium ATCC 35110]
gi|193089478|gb|ACF14753.1| SsrA-binding protein [Chloroherpeton thalassium ATCC 35110]
Length = 150
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 100/149 (67%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
P NRKAR+ +HI+ + EAGIVL GTEVKS+R+ K +++SYA E++L
Sbjct: 2 SKPTYVTSLLNRKARHEFHILDTLEAGIVLKGTEVKSIRLGKAGLNESYAMIHRGEVFLE 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N I Y NH P+R+RKLLL ++EI +L V G+TL+P+K+YFN KG+AKI+
Sbjct: 62 NMQITPYEHGTIENHEPKRSRKLLLHRKEILKLQQKVADSGLTLIPLKLYFNQKGIAKIE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155
LALA+GKK +DKRE K+RD +R+ R +
Sbjct: 122 LALAKGKKLHDKREAIKQRDTERELRRFI 150
>gi|315150001|gb|EFT94017.1| SsrA-binding protein [Enterococcus faecalis TX0012]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I
Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ DR+ R L+ +
Sbjct: 126 GKKQYDKREDLKRKEVDRKISRTLKNN 152
>gi|146319044|ref|YP_001198756.1| SsrA-binding protein [Streptococcus suis 05ZYH33]
gi|146321251|ref|YP_001200962.1| SsrA-binding protein [Streptococcus suis 98HAH33]
gi|253752107|ref|YP_003025248.1| SsrA-binding protein [Streptococcus suis SC84]
gi|253753932|ref|YP_003027073.1| SsrA-binding protein [Streptococcus suis P1/7]
gi|253755193|ref|YP_003028333.1| SsrA-binding protein [Streptococcus suis BM407]
gi|166223465|sp|A4W2H3|SSRP_STRS2 RecName: Full=SsrA-binding protein
gi|166223467|sp|A4VW67|SSRP_STRSY RecName: Full=SsrA-binding protein
gi|145689850|gb|ABP90356.1| tmRNA-binding protein [Streptococcus suis 05ZYH33]
gi|145692057|gb|ABP92562.1| tmRNA-binding protein [Streptococcus suis 98HAH33]
gi|251816396|emb|CAZ52027.1| SsrA-binding protein [Streptococcus suis SC84]
gi|251817657|emb|CAZ55405.1| SsrA-binding protein [Streptococcus suis BM407]
gi|251820178|emb|CAR46541.1| SsrA-binding protein [Streptococcus suis P1/7]
gi|292558690|gb|ADE31691.1| SmpB protein [Streptococcus suis GZ1]
gi|319758483|gb|ADV70425.1| SsrA-binding protein [Streptococcus suis JS14]
Length = 155
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ N+KAR++Y IV + EAG+VLTGTE+KS+R ++N+ D +A + E WL N +I
Sbjct: 7 NVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRINLKDGFAQIKQGEAWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I L V+ GMTLVP+K+Y G AK+ + LA+
Sbjct: 67 PYDEGNIWNQEPTRTRKLLLRKKQIESLDNEVKGTGMTLVPLKVYIKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R ++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIKRTMKAIN 153
>gi|223932656|ref|ZP_03624655.1| SsrA-binding protein [Streptococcus suis 89/1591]
gi|302024108|ref|ZP_07249319.1| SsrA-binding protein [Streptococcus suis 05HAS68]
gi|330832415|ref|YP_004401240.1| SsrA-binding protein [Streptococcus suis ST3]
gi|223898626|gb|EEF64988.1| SsrA-binding protein [Streptococcus suis 89/1591]
gi|329306638|gb|AEB81054.1| SsrA-binding protein [Streptococcus suis ST3]
Length = 155
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ N+KAR++Y IV + EAG+VLTGTE+KS+R ++N+ D +A + E WL N +I
Sbjct: 7 NVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRINLKDGFAQIKQGEAWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I L V+ GMTLVP+K+Y G AK+ + LA+
Sbjct: 67 PYDEGNIWNQEPTRTRKLLLRKKQIESLGNEVKGTGMTLVPLKVYIKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R ++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIKRTMKAIN 153
>gi|18310277|ref|NP_562211.1| SsrA-binding protein [Clostridium perfringens str. 13]
gi|110800123|ref|YP_695944.1| SsrA-binding protein [Clostridium perfringens ATCC 13124]
gi|110801604|ref|YP_698613.1| SsrA-binding protein [Clostridium perfringens SM101]
gi|168207559|ref|ZP_02633564.1| SsrA-binding protein [Clostridium perfringens E str. JGS1987]
gi|168209587|ref|ZP_02635212.1| SsrA-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|168213003|ref|ZP_02638628.1| SsrA-binding protein [Clostridium perfringens CPE str. F4969]
gi|168217055|ref|ZP_02642680.1| SsrA-binding protein [Clostridium perfringens NCTC 8239]
gi|169344559|ref|ZP_02865527.1| SsrA-binding protein [Clostridium perfringens C str. JGS1495]
gi|182624216|ref|ZP_02952002.1| SsrA-binding protein [Clostridium perfringens D str. JGS1721]
gi|22096161|sp|Q8XKU7|SSRP_CLOPE RecName: Full=SsrA-binding protein
gi|123047401|sp|Q0STE4|SSRP_CLOPS RecName: Full=SsrA-binding protein
gi|123344778|sp|Q0TQZ6|SSRP_CLOP1 RecName: Full=SsrA-binding protein
gi|18144957|dbj|BAB81001.1| probable SSRA-binding protein [Clostridium perfringens str. 13]
gi|110674770|gb|ABG83757.1| SsrA-binding protein [Clostridium perfringens ATCC 13124]
gi|110682105|gb|ABG85475.1| SsrA-binding protein [Clostridium perfringens SM101]
gi|169297320|gb|EDS79430.1| SsrA-binding protein [Clostridium perfringens C str. JGS1495]
gi|170661106|gb|EDT13789.1| SsrA-binding protein [Clostridium perfringens E str. JGS1987]
gi|170712205|gb|EDT24387.1| SsrA-binding protein [Clostridium perfringens B str. ATCC 3626]
gi|170715442|gb|EDT27624.1| SsrA-binding protein [Clostridium perfringens CPE str. F4969]
gi|177910630|gb|EDT72998.1| SsrA-binding protein [Clostridium perfringens D str. JGS1721]
gi|182380804|gb|EDT78283.1| SsrA-binding protein [Clostridium perfringens NCTC 8239]
Length = 156
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K +++NRKAR++Y + + EAGI L GTEVKS+R +VN+ D YA N
Sbjct: 1 MAKRK----DNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI++ N +I Y Q N FN P R RKLLL K EI RL V++ G+ L+P+ +Y
Sbjct: 57 GEIFINNMHISPYEQGNIFNVDPLRKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLK-N 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K++L + +GKKNYDKR+T ++ R+ R L+E N
Sbjct: 116 GRVKVNLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERN 154
>gi|22537624|ref|NP_688475.1| SsrA-binding protein [Streptococcus agalactiae 2603V/R]
gi|25011589|ref|NP_735984.1| SsrA-binding protein [Streptococcus agalactiae NEM316]
gi|76788109|ref|YP_330118.1| SsrA-binding protein [Streptococcus agalactiae A909]
gi|76799425|ref|ZP_00781574.1| SsrA-binding protein [Streptococcus agalactiae 18RS21]
gi|77405173|ref|ZP_00782271.1| SsrA-binding protein [Streptococcus agalactiae H36B]
gi|77408544|ref|ZP_00785280.1| SsrA-binding protein [Streptococcus agalactiae COH1]
gi|77411052|ref|ZP_00787406.1| SsrA-binding protein [Streptococcus agalactiae CJB111]
gi|77414830|ref|ZP_00790947.1| SsrA-binding protein [Streptococcus agalactiae 515]
gi|54039642|sp|P66865|SSRP_STRA5 RecName: Full=SsrA-binding protein
gi|54042229|sp|P66864|SSRP_STRA3 RecName: Full=SsrA-binding protein
gi|123601498|sp|Q3K035|SSRP_STRA1 RecName: Full=SsrA-binding protein
gi|22534510|gb|AAN00348.1|AE014260_4 SsrA-binding protein [Streptococcus agalactiae 2603V/R]
gi|24413128|emb|CAD47206.1| Unknown [Streptococcus agalactiae NEM316]
gi|76563166|gb|ABA45750.1| SsrA-binding protein [Streptococcus agalactiae A909]
gi|76585220|gb|EAO61829.1| SsrA-binding protein [Streptococcus agalactiae 18RS21]
gi|77159121|gb|EAO70315.1| SsrA-binding protein [Streptococcus agalactiae 515]
gi|77162875|gb|EAO73832.1| SsrA-binding protein [Streptococcus agalactiae CJB111]
gi|77172818|gb|EAO75951.1| SsrA-binding protein [Streptococcus agalactiae COH1]
gi|77176175|gb|EAO78946.1| SsrA-binding protein [Streptococcus agalactiae H36B]
gi|319745437|gb|EFV97743.1| SsrA-binding protein [Streptococcus agalactiae ATCC 13813]
Length = 155
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/152 (47%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
VV+ N+KA ++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N
Sbjct: 3 KGQGNVVAQNKKAHHDYTIVETIEAGIVLTGTEIKSVRAARITLKDGYAQIKNGEAWLIN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y Q N +N P R RKLLL KREI ++ ++ GMTLVP+K+Y G AK+ L
Sbjct: 63 VHITPYDQGNIWNQDPDRTRKLLLKKREIEKISNELKGTGMTLVPLKVYLKD-GFAKVLL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
LA+GK +YDKRE+ K+R+ +R R L+ +N
Sbjct: 122 GLAKGKHDYDKRESIKRREQNRDIARQLKNYN 153
>gi|54295663|ref|YP_128078.1| SsrA-binding protein [Legionella pneumophila str. Lens]
gi|54298831|ref|YP_125200.1| SsrA-binding protein [Legionella pneumophila str. Paris]
gi|61216433|sp|Q5WSX5|SSRP_LEGPL RecName: Full=SsrA-binding protein
gi|61216436|sp|Q5X148|SSRP_LEGPA RecName: Full=SsrA-binding protein
gi|53752616|emb|CAH14051.1| hypothetical protein lpp2898 [Legionella pneumophila str. Paris]
gi|53755495|emb|CAH16994.1| hypothetical protein lpl2751 [Legionella pneumophila str. Lens]
gi|307611711|emb|CBX01407.1| hypothetical protein LPW_30991 [Legionella pneumophila 130b]
Length = 156
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++ NRKA ++Y I +EAG+VL G EVKSLR K+N+SDS+ +
Sbjct: 1 MTTKKQPDS---TIALNRKAGFDYFIEDQYEAGLVLEGWEVKSLRAGKINLSDSHVIIKY 57
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + F P R RKLL++K+E++ L +V R G T+VP+ +Y+
Sbjct: 58 GEAFLLGAQIQPLPTASTHFIPDPVRTRKLLMNKKELNHLIGSVERQGYTIVPLSLYWKK 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ ALA+GKK +DKR+T K R+W R + RI++++
Sbjct: 118 NKIKIKI-ALAKGKKEHDKRDTIKDREWQRDRSRIMKKN 155
>gi|241894753|ref|ZP_04782049.1| SsrA-binding protein [Weissella paramesenteroides ATCC 33313]
gi|241871965|gb|EER75716.1| SsrA-binding protein [Weissella paramesenteroides ATCC 33313]
Length = 156
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ N KARYNY I ++EAGI LTGTE+KS+R SK+ I D + +
Sbjct: 1 MAKKKQRADGA--LATNNKARYNYAIAETYEAGIELTGTEIKSVRASKITIGDGFVQVRD 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+ WL N +I + Q NRFNH P R+R+LLL K+EI L AAV + G T+VP+K+Y
Sbjct: 59 GQAWLDNVHISPFEQGNRFNHDPLRSRRLLLHKKEIQVLQAAVAQQGKTIVPLKVYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A GK NYDKRET K+RD DR+ HR L++
Sbjct: 118 GFAKVLIGVATGKHNYDKRETIKRRDQDRELHRTLKKR 155
>gi|307244704|ref|ZP_07526807.1| SsrA-binding protein [Peptostreptococcus stomatis DSM 17678]
gi|306491955|gb|EFM64005.1| SsrA-binding protein [Peptostreptococcus stomatis DSM 17678]
Length = 151
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KK+++ N+KAR++Y I FE GI L GTEVKS+R +VN+ + YA+ +N E++L
Sbjct: 2 SGKKILATNKKARHDYFIDEVFECGIELKGTEVKSIRQGRVNLKEGYASVDNSEVFLKQV 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y Q NRFN P R RKLLL K EI +L A G +LVPM +Y G K++L
Sbjct: 62 HISPYDQGNRFNVDPLRTRKLLLHKSEIRKLIGATTVKGYSLVPMSMYLK-NGKVKLELG 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +GKK YDKR+ K+D R+ R ++
Sbjct: 121 LGKGKKLYDKRQDLAKKDAMRRIERESKDR 150
>gi|300173698|ref|YP_003772864.1| SsrA-binding protein [Leuconostoc gasicomitatum LMG 18811]
gi|299888077|emb|CBL92045.1| SsrA-binding protein [Leuconostoc gasicomitatum LMG 18811]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ ++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T N
Sbjct: 1 MAKTNKNVGNY--LAQNRKARFNYAIEETFEAGISLTGTEIKSVRAGQITIGDGFITIHN 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
LTN I Y Q N+FN P R R+LLL KREI L A G+T+VP+K+Y
Sbjct: 59 GNAILTNVNIAAYTQGNQFNVDPLRPRQLLLHKREIVSLNKAAIEPGVTIVPLKVYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AKI + + +GKK YDKRE KKRD +R+ R L+
Sbjct: 118 GFAKILIGVGRGKKKYDKREDIKKRDQERELGRRLKH 154
>gi|330428256|gb|AEC19590.1| SsrA-binding protein [Pusillimonas sp. T7-7]
Length = 155
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R V + +SY + EIW+ N +I
Sbjct: 3 IVDNRKATHDYFIEDRYEAGLVLEGWEVKAIRAGHVQLKESYVIVRDGEIWIINMHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL EI +L V + G TLVP+ +++ G K+D L +G
Sbjct: 63 PTASTHIHPNSTRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFGLGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+T + +DW+R+K RI++
Sbjct: 122 KKLHDKRDTARDKDWEREKERIMKH 146
>gi|88860467|ref|ZP_01135105.1| SsrA-binding protein [Pseudoalteromonas tunicata D2]
gi|88817665|gb|EAR27482.1| SsrA-binding protein [Pseudoalteromonas tunicata D2]
Length = 159
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNISD+Y +N
Sbjct: 1 MA-NKKSKPGSNTIALNKKARHEYSLGDKFEAGLELQGWEVKSIRAGKVNISDTYIHLKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S I + P R RKLLL KREI RL + RDG TLV +Y+
Sbjct: 60 GEAFLLGSQIQPLNSASTHVICDPYRYRKLLLKKREIDRLVGSTERDGFTLVATAMYWKQ 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K++ LA+GKK +DKRE K++DW R+K R ++
Sbjct: 120 -CWVKLEFHLAKGKKLHDKREDGKEKDWAREKERTMKH 156
>gi|163802494|ref|ZP_02196387.1| SsrA-binding protein [Vibrio sp. AND4]
gi|159173795|gb|EDP58610.1| SsrA-binding protein [Vibrio sp. AND4]
Length = 161
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY +
Sbjct: 3 KKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKSLRQGKANIAESYVFMRDG 62
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ +
Sbjct: 63 EAYVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS-R 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
KI + +A+GKK +DKR K++DW R K RI++
Sbjct: 122 SWVKIKIGVAKGKKLHDKRTDMKEKDWARDKARIMK 157
>gi|283851022|ref|ZP_06368307.1| SsrA-binding protein [Desulfovibrio sp. FW1012B]
gi|283573668|gb|EFC21643.1| SsrA-binding protein [Desulfovibrio sp. FW1012B]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K +K+++ N+KAR+ Y + +EAG+VL GTEVKSLR ++ D Y F
Sbjct: 1 MSAKE---SGEKLIAQNKKARHLYEFIDKYEAGLVLVGTEVKSLRAGHISFKDGYVKFTA 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L +I Y A + H P R RKLLL EI+ L A V + G+T+ P+++YF
Sbjct: 58 TEAFLVGVHIAPYENAGQDGHDPERPRKLLLHAAEINTLRAKVEQKGLTVAPVRVYFK-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++AL +GKK +D+R+ K RD R R L H
Sbjct: 117 GKVKVEIALCRGKKTFDRRDDLKNRDLARDAARELARH 154
>gi|260773335|ref|ZP_05882251.1| tmRNA-binding protein SmpB [Vibrio metschnikovii CIP 69.14]
gi|260612474|gb|EEX37677.1| tmRNA-binding protein SmpB [Vibrio metschnikovii CIP 69.14]
Length = 161
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNP-PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M K ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 1 MVKKKSTKKAGSSTIALNKKARHEYFIEDEVEAGLELQGWEVKSLRQGKANIAESYVFLR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL + +Y++
Sbjct: 61 DGEAFISGMTITPLQQASTHVVANPTRVRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +++GKK +DKR+ K++DW R+K R+++
Sbjct: 121 -RSWVKIKVGVSKGKKLHDKRDDLKEKDWAREKARVMK 157
>gi|154503017|ref|ZP_02040077.1| hypothetical protein RUMGNA_00839 [Ruminococcus gnavus ATCC 29149]
gi|153796371|gb|EDN78791.1| hypothetical protein RUMGNA_00839 [Ruminococcus gnavus ATCC 29149]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 103/159 (64%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K K++++N+KA ++Y I+ +EAGIVL GTEVKSLR+ + +I +++ EN
Sbjct: 1 MAKKE-----GKLIANNKKAYHDYFILEKYEAGIVLHGTEVKSLRMGQCSIKEAFIRIEN 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ ++ Y + N FN P R RKLLL K+EI +++ ++ G T+VP+++YFN
Sbjct: 56 GEMFIYGMHVSPYEKGNIFNKDPLRPRKLLLHKKEIDKIFGKMKEKGNTVVPLQVYFNGS 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 116 -LVKVEVGLAKGKKLYDKRDDIAKKDQKREAQREFKIRN 153
>gi|194365368|ref|YP_002027978.1| SsrA-binding protein [Stenotrophomonas maltophilia R551-3]
gi|238693491|sp|B4SS56|SSRP_STRM5 RecName: Full=SsrA-binding protein
gi|194348172|gb|ACF51295.1| SsrA-binding protein [Stenotrophomonas maltophilia R551-3]
Length = 167
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 7/165 (4%)
Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
MS K++ K ++ N++AR+ YHI FEAG+ L G EVKS+R + NI D+Y
Sbjct: 1 MSKNSVKDKAKSATANKTIALNKRARHEYHIEERFEAGLALQGWEVKSIRAGRGNIIDAY 60
Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114
A + EI+L + I +Q + RR RKLLL + EI +L V RDG T+VP
Sbjct: 61 AYVKQGEIFLIGAQITPLIQASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTA 120
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y++ K K+++ALA+GK+ +DKR+ K RDW +K R++R N
Sbjct: 121 MYWS-KNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVMRRGN 164
>gi|332181251|gb|AEE16939.1| SsrA-binding protein [Treponema brennaborense DSM 12168]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ +K+++ NRKAR+NY I S E GIVL GTEVKS++ ++ D++A +N E+W+
Sbjct: 2 SEGRKLIAQNRKARFNYSIEDSIECGIVLEGTEVKSVKAGNISFPDAFAEIQNGEVWVKG 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I EY ++ FNH P R +KLLL K EI RL + G TL+P+ Y G K++L
Sbjct: 62 LHIAEYAFSSVFNHDPDRPKKLLLHKDEIKRLIRKIDEKGFTLIPLDFYLKD-GRVKVNL 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ +GKK +DKR + RD R R R+
Sbjct: 121 GVCRGKKQFDKRADIRDRDVKRDMQREFRK 150
>gi|315641273|ref|ZP_07896350.1| SsrA-binding protein [Enterococcus italicus DSM 15952]
gi|315483040|gb|EFU73559.1| SsrA-binding protein [Enterococcus italicus DSM 15952]
Length = 152
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I
Sbjct: 7 KLIAQNKKARHDYSILETIEAGVVLQGTEIKSVRDSRINLKDGFVRIRNGEAYLYNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I +L + G T+VP+K+Y G AK+ + LA+
Sbjct: 67 PYDQGNIFNHDPLRTRKLLLHKKQIQKLANEAKNPGTTIVPLKVYIKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK+ YDKRET K++D +RQ R+L+
Sbjct: 126 GKREYDKRETLKRKDQERQISRVLKNF 152
>gi|153833551|ref|ZP_01986218.1| SsrA-binding protein [Vibrio harveyi HY01]
gi|156973434|ref|YP_001444341.1| SsrA-binding protein [Vibrio harveyi ATCC BAA-1116]
gi|166223473|sp|A7MWX4|SSRP_VIBHB RecName: Full=SsrA-binding protein
gi|148870202|gb|EDL69143.1| SsrA-binding protein [Vibrio harveyi HY01]
gi|156525028|gb|ABU70114.1| hypothetical protein VIBHAR_01124 [Vibrio harveyi ATCC BAA-1116]
Length = 161
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
KS+ ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY +
Sbjct: 3 KKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKALRQGKANIAESYVFMRDG 62
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ +
Sbjct: 63 EAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS-R 121
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
KI + +A+GKK +DKR K++DW R+K R+++
Sbjct: 122 SWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157
>gi|299821976|ref|ZP_07053864.1| SsrA-binding protein [Listeria grayi DSM 20601]
gi|299817641|gb|EFI84877.1| SsrA-binding protein [Listeria grayi DSM 20601]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR+++ I +FEAGIVL GTE+KS+R ++VN+ DSYA E EI+L N +I
Sbjct: 7 KLIAQNKKARHDFAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIERGEIFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K++I RL + G ++VP+K+Y G AK+ + +A+
Sbjct: 67 PYDQGNRFNHDPLRTRKLLLHKKQISRLIGETKEAGYSIVPLKLYIKD-GFAKVLIGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ R R +E
Sbjct: 126 GKKKYDKREDLKRKEAKRDIERAFKER 152
>gi|229821247|ref|YP_002882773.1| SsrA-binding protein [Beutenbergia cavernae DSM 12333]
gi|229567160|gb|ACQ81011.1| SsrA-binding protein [Beutenbergia cavernae DSM 12333]
Length = 177
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K K VV+ N++AR++YH+ ++EAG+ LTGTEVK+LR + +++D + + + E
Sbjct: 21 KRDKKTEKVVVARNKRARHDYHVDDTYEAGLSLTGTEVKALRAGRASLADGWVSIDGGEA 80
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL + +IPEY Q NH PRR RKLLL + EI +L R G T++P+++YF G A
Sbjct: 81 WLESVHIPEYTQGTWTNHAPRRKRKLLLHREEIDKLAGKAREKGYTVIPLELYFLG-GRA 139
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K+++ LA+GK+ +DKR+T + + R+ R +
Sbjct: 140 KVEIGLARGKQEWDKRQTLRAKQDLREAQRAM 171
>gi|325982585|ref|YP_004294987.1| SsrA-binding protein [Nitrosomonas sp. AL212]
gi|325532104|gb|ADZ26825.1| SsrA-binding protein [Nitrosomonas sp. AL212]
Length = 147
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA ++Y I +EAG+ L G EVKS+R +V + ++Y N ++L S+I
Sbjct: 3 IVQNKKAFHDYFIEEKYEAGLALEGWEVKSIRDGRVQLKEAYVIIRNSALYLIGSHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R RKLLL +I RL V R G TLVP+ +++ G K+++ LA+G
Sbjct: 63 KTASTHINPDPVRTRKLLLHSEQIRRLIGKVERAGYTLVPLDMHYKT-GRIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE+EK+++W+R K R++R+
Sbjct: 122 KKQHDKRESEKQKEWERTKQRLMRDK 147
>gi|325265614|ref|ZP_08132304.1| SsrA-binding protein [Kingella denitrificans ATCC 33394]
gi|324982884|gb|EGC18506.1| SsrA-binding protein [Kingella denitrificans ATCC 33394]
Length = 196
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 94/145 (64%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKA ++Y+I +AG+VL G EVK++R +V + +SY ++ D +L +I
Sbjct: 51 IANNRKAFHDYYIEEQIQAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVGCHITAL 110
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL++REI++L R G T+VP+ ++F+ +G K ++ LA+G
Sbjct: 111 PTASTHVRPDPVRPRKLLLNQREINKLIGKTERAGYTIVPLNMHFH-RGKIKAEIGLAKG 169
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRE+ K+ DW R+K R++++
Sbjct: 170 KKLHDKRESSKESDWKREKQRLMKQ 194
>gi|114330602|ref|YP_746824.1| SsrA-binding protein [Nitrosomonas eutropha C91]
gi|122314404|sp|Q0AIG7|SSRP_NITEC RecName: Full=SsrA-binding protein
gi|114307616|gb|ABI58859.1| SsrA-binding protein [Nitrosomonas eutropha C91]
Length = 149
Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I +EAGIVL G EVK++R +V + ++Y E++L +I
Sbjct: 3 IAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRAGRVQLKEAYIVIRRGELFLIGCHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P + RKLLL +I L V R G TLVP+ +++ A G K+++ LA+G
Sbjct: 63 PTASTHVNPDPVKTRKLLLHAFQIKELIGKVERAGYTLVPLDMHYKA-GKIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE+EK+++W+R K R+LR
Sbjct: 122 KKQYDKRESEKRKEWERDKQRLLRMR 147
>gi|28377651|ref|NP_784543.1| SsrA-binding protein [Lactobacillus plantarum WCFS1]
gi|254555830|ref|YP_003062247.1| SsrA-binding protein [Lactobacillus plantarum JDM1]
gi|300767620|ref|ZP_07077530.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308179811|ref|YP_003923939.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|38258539|sp|Q88YG7|SSRP_LACPL RecName: Full=SsrA-binding protein
gi|28270484|emb|CAD63386.1| SSRA RNA binding protein [Lactobacillus plantarum WCFS1]
gi|254044757|gb|ACT61550.1| SsrA-binding protein [Lactobacillus plantarum JDM1]
gi|300494605|gb|EFK29763.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum ATCC
14917]
gi|308045302|gb|ADN97845.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 156
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K G P ++ NRKAR++Y + ++EAGI LTGTE+KS+R +VN+ D + N
Sbjct: 1 MA-KQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E W+ N +I + + NR+N P R+RKLLL K+EI +L AA G+T++P+K+Y
Sbjct: 60 GEAWMQNVHISPFKEGNRYNVDPLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLK-H 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A GK+ YDKR+ KKR+ RQ R+++ +
Sbjct: 119 GFAKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY 156
>gi|52843035|ref|YP_096834.1| SsrA-binding protein [Legionella pneumophila subsp. pneumophila
str. Philadelphia 1]
gi|148361149|ref|YP_001252356.1| SsrA (tmRNA) binding protein [Legionella pneumophila str. Corby]
gi|296108483|ref|YP_003620184.1| SsrA-binding protein [Legionella pneumophila 2300/99 Alcoy]
gi|61216447|sp|Q5ZRP1|SSRP_LEGPH RecName: Full=SsrA-binding protein
gi|166223225|sp|A5II10|SSRP_LEGPC RecName: Full=SsrA-binding protein
gi|52630146|gb|AAU28887.1| SsrA (tmRNA) binding protein [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|148282922|gb|ABQ57010.1| SsrA (tmRNA) binding protein [Legionella pneumophila str. Corby]
gi|295650385|gb|ADG26232.1| SsrA-binding protein [Legionella pneumophila 2300/99 Alcoy]
Length = 156
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++ NRKA ++Y I +EAG+VL G EVKSLR K+N+SDS+ +
Sbjct: 1 MTTKKQPDS---TIALNRKAGFDYFIEDQYEAGLVLEGWEVKSLRAGKINLSDSHVIIKY 57
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + F P R RKLL++K+E++ L +V R G T+VP+ +Y+
Sbjct: 58 GEAFLLGAQIQPLPTASTHFIPDPIRTRKLLMNKKELNHLIGSVERQGYTIVPLSLYWKK 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ ALA+GKK +DKR+T K R+W R + RI++++
Sbjct: 118 NKIKIKI-ALAKGKKEHDKRDTIKDREWQRDRSRIMKKN 155
>gi|291549470|emb|CBL25732.1| SsrA-binding protein [Ruminococcus torques L2-14]
Length = 154
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 105/159 (66%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA ++Y I+ +EAG+VL GTEVKSLR+ K +I +++ E+
Sbjct: 1 MAKTEK-----KLIANNKKAYHDYFILEKYEAGLVLHGTEVKSLRMGKCSIKEAFIRVED 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLLL K+EI +++ ++ G+T+VP+++YF+
Sbjct: 56 GEMYIYGMHISPYEKGNIFNKDPLRVRKLLLHKKEILKIFGKMKEQGITVVPLQVYFSGS 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L KI++ LA+GKK YDKRET K+D R+ R + N
Sbjct: 116 -LVKIEIGLAKGKKLYDKRETIAKKDQKREAQREFKAFN 153
>gi|209542290|ref|YP_002274519.1| SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5]
gi|209529967|gb|ACI49904.1| SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 162
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
Query: 1 MS-LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K G + + NRK R+NY I+ + EAG+VL G EVKSLR+ + I+++YA
Sbjct: 1 MAEKKKSGMISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDR 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ EIWL NSYIPEY R RKLLL ++++ +L AV RDG+TLVP+ I+FNA
Sbjct: 61 DGEIWLFNSYIPEYQGGVLSRFETRAPRKLLLHRKQVDKLLGAVARDGVTLVPLDIHFNA 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+AK+ L + +G+K DKR+ RDW R K R+LR
Sbjct: 121 RGVAKVTLGIGEGRKKADKRQAIADRDWQRDKARLLRNK 159
>gi|84387677|ref|ZP_00990694.1| SsrA-binding protein [Vibrio splendidus 12B01]
gi|86145626|ref|ZP_01063956.1| SsrA-binding protein [Vibrio sp. MED222]
gi|84377522|gb|EAP94388.1| SsrA-binding protein [Vibrio splendidus 12B01]
gi|85836597|gb|EAQ54723.1| SsrA-binding protein [Vibrio sp. MED222]
Length = 161
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY
Sbjct: 1 MAKNKSKSKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLREGKTNIAESYVYIR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S++E+ L + R+GMTLV +Y++
Sbjct: 61 DGEAFISGMTITPLTQASTHIVANPTRIRKLLMSRKELDNLIGRINREGMTLVATALYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ AKI + +A+GKK +DKR K++DW R K RI++ +
Sbjct: 121 -RSWAKIKVGVAKGKKLHDKRTDMKEKDWARDKARIMKSN 159
>gi|160898445|ref|YP_001564027.1| SsrA-binding protein [Delftia acidovorans SPH-1]
gi|160364029|gb|ABX35642.1| SsrA-binding protein [Delftia acidovorans SPH-1]
Length = 173
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++DN+KA +NY FEAGIVL G EVK+LR KV ++D Y ++
Sbjct: 17 MAKKPETQSR---IADNKKAAFNYFFEERFEAGIVLHGWEVKALRSGKVQLTDGYVIVKD 73
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L I + N R +KLLL K +I RL V + G TLVP+ +++
Sbjct: 74 GELFLLGCQINPLKTASTHVNPDAARIKKLLLKKDDILRLIGKVEQKGFTLVPINLHWK- 132
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K D+ALA+GK +DKR+ K R+ R+ R ++ N
Sbjct: 133 NGFVKCDIALAKGKAEHDKRDVIKDREGKREVERAMKSFN 172
>gi|326330848|ref|ZP_08197149.1| SsrA-binding protein [Nocardioidaceae bacterium Broad-1]
gi|325951378|gb|EGD43417.1| SsrA-binding protein [Nocardioidaceae bacterium Broad-1]
Length = 159
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 5/152 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +K+++ N+KAR++YHI ++EAG+VL GTEVKSLR + ++ D + +
Sbjct: 1 MAK----EQGRKMIAQNKKARHDYHIEDTYEAGMVLQGTEVKSLREGRASLVDGFVDIDR 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E W+ +IPEYL NH RR RKLLL + EI ++ V G+T+VP+ +YF
Sbjct: 57 GEAWIHGIHIPEYLNGTWTNHAARRKRKLLLHRAEIDKIERKVAEKGLTVVPLALYF-LN 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152
G AK+++ +A+GKK++DKR T +R R+
Sbjct: 116 GRAKVEIGVAKGKKSWDKRNTIAERTAKREAE 147
>gi|294616242|ref|ZP_06696035.1| SsrA-binding protein [Enterococcus faecium E1636]
gi|291590756|gb|EFF22472.1| SsrA-binding protein [Enterococcus faecium E1636]
Length = 154
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N+E +L N +I
Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRNEEAFLHNVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y G AK+ + LA+
Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-NGYAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK+YDKRE K++D DRQ R L+ +
Sbjct: 126 GKKSYDKREDLKRKDIDRQIDRTLKNFS 153
>gi|119478699|ref|ZP_01618578.1| SsrA-binding protein [marine gamma proteobacterium HTCC2143]
gi|119448380|gb|EAW29633.1| SsrA-binding protein [marine gamma proteobacterium HTCC2143]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ N+KAR++YH+ FEAG+VL G EVKSLR+ KV I+D+Y +N
Sbjct: 1 MAKK-KPKQTSNTIAQNKKARHDYHLTEKFEAGLVLHGWEVKSLRMGKVQITDTYVLIKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L ++I + F P R RKLLL+KREI +L A ++G T V +Y+
Sbjct: 60 GEAFLIGTHITPLNTASTHFIADPTRTRKLLLNKREIAKLLVATTQEGHTCVCTALYWKN 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ K ++ +A+GK+ +DKRETEK+RDW++QK R++R
Sbjct: 120 H-IVKAEICIAKGKQQHDKRETEKERDWNKQKSRVMRH 156
>gi|90416959|ref|ZP_01224888.1| SmpB protein [marine gamma proteobacterium HTCC2207]
gi|90331306|gb|EAS46550.1| SmpB protein [marine gamma proteobacterium HTCC2207]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/155 (42%), Positives = 99/155 (63%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N+KA++NY + + FEAGI L G EVKSLR KVN++D+Y +N E
Sbjct: 3 KKKPKAQSSTIALNKKAKHNYFLEQKFEAGIALMGWEVKSLREGKVNLTDTYVLLQNGEA 62
Query: 64 WLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL + I + + P R+RKLLL++RE+ +L A V + G T V +Y+ + L
Sbjct: 63 WLIGTNITPLPTASTHYVTEPIRSRKLLLNRRELDKLEAGVNQKGHTCVCTAMYWKSH-L 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALA+GK ++DKR +K+RDWDRQK RI+R
Sbjct: 122 IKVEIALAKGKADFDKRNDDKERDWDRQKQRIMRH 156
>gi|329121969|ref|ZP_08250581.1| SsrA-binding protein [Dialister micraerophilus DSM 19965]
gi|327467267|gb|EGF12770.1| SsrA-binding protein [Dialister micraerophilus DSM 19965]
Length = 156
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K P + NRKA ++Y I ++EAGIVLTGTEVKS+R ++NI DSYA E
Sbjct: 1 MIKKEFTLPS----AVNRKAYHDYFIHDTYEAGIVLTGTEVKSIRSGRMNIKDSYARIEK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N++I Y Q NRFNH P R RKLL+ K+E+++L ++ G TL+P+KIYFN +
Sbjct: 57 GELWLWNAHISPYEQGNRFNHDPLRTRKLLVHKKELNKLEIMMKTKGYTLIPLKIYFN-R 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K + +A GKK +DKR ++ R R L+E N
Sbjct: 116 GKIKCLIGVATGKKLHDKRRDIAEKAVKRDLDRRLKERN 154
>gi|290959963|ref|YP_003491145.1| hypothetical protein SCAB_55751 [Streptomyces scabiei 87.22]
gi|260649489|emb|CBG72604.1| small protein B homologue [Streptomyces scabiei 87.22]
Length = 184
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+V+ N+KAR++Y I+ ++EAG+VL GTEVKSLR + +++D + + E WL N++I
Sbjct: 31 KKIVAQNKKARHDYAIIDTYEAGLVLMGTEVKSLREGRTSLADGFVQIDRGEAWLHNAHI 90
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
PEY Q + NH RR RKLLL + EI +L + + G T+VP+ +YF G AK ++ALA
Sbjct: 91 PEYHQGSWTNHSARRKRKLLLHREEIDKLESKAQETGHTIVPLALYFKD-GRAKAEIALA 149
Query: 131 QGKKNYDKRETEKKRDWDRQKHRIL 155
+GKK YDKR+T +++ R+ R +
Sbjct: 150 RGKKEYDKRQTLREQQDRRESDRAI 174
>gi|148260900|ref|YP_001235027.1| SsrA-binding protein [Acidiphilium cryptum JF-5]
gi|326404297|ref|YP_004284379.1| ssrA-binding protein [Acidiphilium multivorum AIU301]
gi|187611492|sp|A5FZS6|SSRP_ACICJ RecName: Full=SsrA-binding protein
gi|146402581|gb|ABQ31108.1| SsrA-binding protein [Acidiphilium cryptum JF-5]
gi|325051159|dbj|BAJ81497.1| ssrA-binding protein [Acidiphilium multivorum AIU301]
Length = 159
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/146 (45%), Positives = 98/146 (67%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ + NRKAR+NY I + EAGIVL G EVKSLR+ + +S+++A + E++L N YIPE
Sbjct: 14 IAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYIPE 73
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + RKLLL +++I +L A+ R G T+VP+ ++FN +GLAK+ L +A+G
Sbjct: 74 YQGGVLSRFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEG 133
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
+K +DKR+ KRDW+R K RIL+
Sbjct: 134 RKQHDKRQAIAKRDWERDKARILKNR 159
>gi|283797701|ref|ZP_06346854.1| SsrA-binding protein [Clostridium sp. M62/1]
gi|291074595|gb|EFE11959.1| SsrA-binding protein [Clostridium sp. M62/1]
Length = 154
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K+V++N+KA ++Y I +E GI L GTEVKS+R+ K +I +++ EN ++++
Sbjct: 2 GTNNFKLVANNKKAFHDYFIDDKYETGIELYGTEVKSIRMGKCSIKEAFVRIENGQVYVY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R RKLL+ ++EI RL + ++ G TLVP+++Y L K++
Sbjct: 62 GMHISPYEKGNIFNRDPLRQRKLLMHRKEIDRLVSEIKEKGFTLVPLQVYLKGS-LVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ LA+GKK YDKRE K+D R+ R +
Sbjct: 121 IGLARGKKLYDKREDLAKKDARREIERGFKAK 152
>gi|254468974|ref|ZP_05082380.1| SsrA-binding protein [beta proteobacterium KB13]
gi|207087784|gb|EDZ65067.1| SsrA-binding protein [beta proteobacterium KB13]
Length = 151
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N+KA ++Y I +EAGIVL G EVK++R +++NI +SY + EI+L +I
Sbjct: 2 TIITNKKAFHDYFIEEKYEAGIVLEGWEVKAVRDNRINIKESYVIIQRGEIYLLGCHITP 61
Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ R RKLLL +EI +L V R G TLVP+ +F+ KG K+ + LA+
Sbjct: 62 LGAASTHIRPDAIRTRKLLLKGQEIVKLIGKVERSGFTLVPLDFHFS-KGKIKVQIGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKR+TEK++DW R+K RILR N
Sbjct: 121 GKKQYDKRQTEKEKDWQREKERILRSAN 148
>gi|160880996|ref|YP_001559964.1| SsrA-binding protein [Clostridium phytofermentans ISDg]
gi|187611477|sp|A9KPF1|SSRP_CLOPH RecName: Full=SsrA-binding protein
gi|160429662|gb|ABX43225.1| SsrA-binding protein [Clostridium phytofermentans ISDg]
Length = 154
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K++++N+KAR++Y I ++EAG+VL GTEVKSLR+ K +I +S+ EN E+++ N
Sbjct: 3 KEGIKLIANNKKARFDYFIEETYEAGVVLHGTEVKSLRMGKCSIKESFMRIENGEVYVYN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R +KLLL K +I+++ +++ G TLVP+ IY L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRVKKLLLHKFQINKIVGQIQQKGYTLVPLTIYLKDS-LVKMEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+A+GKK YDKR+ K+D R+ + + N
Sbjct: 122 GVARGKKLYDKRQDIAKKDQKREAEKDFKVKN 153
>gi|293605085|ref|ZP_06687477.1| SsrA-binding protein [Achromobacter piechaudii ATCC 43553]
gi|292816488|gb|EFF75577.1| SsrA-binding protein [Achromobacter piechaudii ATCC 43553]
Length = 157
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + E++L ++
Sbjct: 3 IIDNRKASHDYFIEDRYEAGLVLQGWEVKAIRDGRVQLKESYVIVRDGELYLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+T +++DW R+K RI++
Sbjct: 122 KKLFDKRDTAREKDWQREKERIMKH 146
>gi|34498919|ref|NP_903134.1| SsrA-binding protein [Chromobacterium violaceum ATCC 12472]
gi|39932275|sp|Q7NSG2|SSRP_CHRVO RecName: Full=SsrA-binding protein
gi|34104768|gb|AAQ61125.1| small protein B [Chromobacterium violaceum ATCC 12472]
Length = 151
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ NRKA ++Y I EAG+VL G EVK++R +V + +SY ++N WL +I
Sbjct: 3 IIQNRKAFHDYFIEEKLEAGLVLEGWEVKAIRAGRVQLKESYVDWKNGAFWLIGCHITPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLL+S+ EI+R V R G T++ + +++ KG K ++ LA+G
Sbjct: 63 QSASTHVKPDPVRPRKLLMSQAEINRFIGKVERAGYTMMALDLHYT-KGNVKAEVGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+TEK R+W R+K R+++
Sbjct: 122 KKLHDKRDTEKDREWQREKQRVMKN 146
>gi|81429020|ref|YP_396020.1| SsrA-binding protein [Lactobacillus sakei subsp. sakei 23K]
gi|123563938|sp|Q38VS0|SSRP_LACSS RecName: Full=SsrA-binding protein
gi|78610662|emb|CAI55713.1| t/mRNA binding protein (SsrA RNA binding protein) [Lactobacillus
sakei subsp. sakei 23K]
Length = 156
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P +++ N+KA ++Y+I+ +FEAG+VLTGTE+KS+R K+++ D +A
Sbjct: 1 MAKKHPQKPA-NLIAQNKKAGHDYNILETFEAGLVLTGTEIKSVRKGKISLRDGFARVRR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L N +I Y Q N+FNH P RNRKLLL K+EI ++ A + G+T+VP+++Y
Sbjct: 60 GEAYLENVHISPYEQGNQFNHDPLRNRKLLLHKKEIAKIGALTKDKGITIVPLRVYLK-H 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + + +GK+ YDKRET K+++ DR+ R LR+
Sbjct: 119 GFAKVLIGVGEGKREYDKRETLKRKEQDREMARALRKR 156
>gi|295111962|emb|CBL28712.1| SsrA-binding protein [Synergistetes bacterium SGP1]
Length = 157
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 95/150 (63%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K V+ NRKAR++Y IV +FE GIVLTGTE+KS+R +N+ DSYA+ + E+WL
Sbjct: 4 KANKTVAQNRKARHDYFIVDAFECGIVLTGTEIKSVRAGNLNLKDSYASLDEGELWLVGM 63
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y + +NH P R RKLLL + E+ RL VR G+TLVP+ +Y AK++LA
Sbjct: 64 HISPYEKGTYYNHEPERRRKLLLHRHELLRLKGRVREKGLTLVPLSVYIKEGRRAKVELA 123
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+G+ +DKR+ RD R R +R +
Sbjct: 124 LARGRTAHDKRDAIADRDAKRDMARAVRHN 153
>gi|220913142|ref|YP_002488451.1| SsrA-binding protein [Arthrobacter chlorophenolicus A6]
gi|254778341|sp|B8HBH4|SSRP_ARTCA RecName: Full=SsrA-binding protein
gi|219860020|gb|ACL40362.1| SsrA-binding protein [Arthrobacter chlorophenolicus A6]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KVV+ NRKAR++YH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+
Sbjct: 3 KESGRKVVATNRKARHDYHVLDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWME 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY Q + NH RR RKLLL + E+ ++ V+ G T+VP+++YF G AK++
Sbjct: 63 AIHIPEYNQGSWTNHAARRRRKLLLHREELIKISRKVQEAGYTIVPLQLYFVD-GRAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKH 152
+ +A+GK+ YDKR+T +++ +R+
Sbjct: 122 IGVARGKREYDKRQTLREQQDNREAQ 147
>gi|328955243|ref|YP_004372576.1| SsrA-binding protein [Coriobacterium glomerans PW2]
gi|328455567|gb|AEB06761.1| SsrA-binding protein [Coriobacterium glomerans PW2]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 89/148 (60%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+++ NR ARY Y I +FE G+VL+GTEV+SLR +SD++A E WL +I
Sbjct: 7 KKLIARNRAARYEYAIEETFECGLVLSGTEVRSLRERAAQLSDTFALVRGGECWLVGLHI 66
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + FN P R RKLLL +R+I L +R G LVP+++YF+ G K+ + L
Sbjct: 67 HPYSNGSIFNRDPDRRRKLLLHRRQIDYLDKKLRARGYALVPLELYFDRNGRVKLTVGLG 126
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR+ KRD R R L+E
Sbjct: 127 RGKKLYDKRDDVAKRDMQRDIDRALKER 154
>gi|269103353|ref|ZP_06156050.1| tmRNA-binding protein SmpB [Photobacterium damselae subsp. damselae
CIP 102761]
gi|268163251|gb|EEZ41747.1| tmRNA-binding protein SmpB [Photobacterium damselae subsp. damselae
CIP 102761]
Length = 160
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N+ AR+ + I +EAGI L G EVK++R KVN+++SY N
Sbjct: 1 MAKKPNKKPGSNTIAKNKSARFEFAITDEYEAGISLQGWEVKAIRDGKVNMTESYVYLRN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++++ I + P R RKLLL++REI +L AV RDG T+V + +Y+ A
Sbjct: 61 GEVFISGLTITPLQAASTHVVADPTRIRKLLLNRREIDKLTGAVNRDGETIVALNMYWKA 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
K+ + A+GKK +DKR K RDW R K RI++
Sbjct: 121 S-FVKVKIGTARGKKLHDKRADTKARDWQRDKARIMK 156
>gi|257456966|ref|ZP_05622147.1| SsrA-binding protein [Treponema vincentii ATCC 35580]
gi|257445675|gb|EEV20737.1| SsrA-binding protein [Treponema vincentii ATCC 35580]
Length = 200
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P K+++ N+KA ++Y I + E GI L GTE+KS+R +++ DS+A +E+WL N +
Sbjct: 51 PIKIIAKNKKAHFDYSIEETIECGIALQGTEIKSVRDGRISFPDSFAEIIRNEVWLKNFH 110
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY+ ++ FNH P R +KLLL K EI RL G TL+P++ Y +G K+ L +
Sbjct: 111 ISEYVYSSIFNHDPDRPKKLLLHKDEIKRLTRKTEEKGYTLIPLEFYLK-RGRIKVMLGI 169
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKR K+RD R R L N
Sbjct: 170 CKGKKQFDKRADIKERDIKRDMQRELHLKN 199
>gi|149178101|ref|ZP_01856696.1| SsrA-binding protein [Planctomyces maris DSM 8797]
gi|148843021|gb|EDL57389.1| SsrA-binding protein [Planctomyces maris DSM 8797]
Length = 164
Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ +P + + NRKAR+NY I+ + + GIVL G+EVKS+R +KV+I + +A +NDE+W
Sbjct: 10 SKEDPNSRTICQNRKARHNYEILDTLDCGIVLAGSEVKSIRANKVSIEEGFARMQNDEVW 69
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N I Y QAN NH RR RKLL+ K EI + +TL+P+ +YF +GL K
Sbjct: 70 LFNVDIALYPQANTMNHQTRRPRKLLMKKAEIRKFAERSENSSLTLIPLSMYFT-RGLVK 128
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ L +A+G+K +DKRE KK R +R N
Sbjct: 129 VKLGIAKGRKLHDKREKLKKDSARMDIQRAMRARN 163
>gi|125718407|ref|YP_001035540.1| SsrA-binding protein [Streptococcus sanguinis SK36]
gi|157150641|ref|YP_001450021.1| SsrA-binding protein [Streptococcus gordonii str. Challis substr.
CH1]
gi|262282696|ref|ZP_06060464.1| SsrA-binding protein [Streptococcus sp. 2_1_36FAA]
gi|322385826|ref|ZP_08059469.1| SsrA-binding protein [Streptococcus cristatus ATCC 51100]
gi|323351182|ref|ZP_08086838.1| SsrA-binding protein [Streptococcus sanguinis VMC66]
gi|166223466|sp|A3CP85|SSRP_STRSV RecName: Full=SsrA-binding protein
gi|189046851|sp|A8AW61|SSRP_STRGC RecName: Full=SsrA-binding protein
gi|125498324|gb|ABN44990.1| VacB-like protein, putative [Streptococcus sanguinis SK36]
gi|157075435|gb|ABV10118.1| SsrA-binding protein [Streptococcus gordonii str. Challis substr.
CH1]
gi|262261987|gb|EEY80685.1| SsrA-binding protein [Streptococcus sp. 2_1_36FAA]
gi|321270111|gb|EFX53028.1| SsrA-binding protein [Streptococcus cristatus ATCC 51100]
gi|322122406|gb|EFX94117.1| SsrA-binding protein [Streptococcus sanguinis VMC66]
gi|324991460|gb|EGC23393.1| SsrA-binding protein [Streptococcus sanguinis SK353]
gi|324993811|gb|EGC25730.1| SsrA-binding protein [Streptococcus sanguinis SK405]
gi|324994868|gb|EGC26781.1| SsrA-binding protein [Streptococcus sanguinis SK678]
gi|325687302|gb|EGD29324.1| SsrA-binding protein [Streptococcus sanguinis SK72]
gi|325696169|gb|EGD38060.1| SsrA-binding protein [Streptococcus sanguinis SK160]
gi|327460970|gb|EGF07303.1| SsrA-binding protein [Streptococcus sanguinis SK1057]
gi|327463085|gb|EGF09406.1| SsrA-binding protein [Streptococcus sanguinis SK1]
gi|327470600|gb|EGF16056.1| SsrA-binding protein [Streptococcus sanguinis SK330]
gi|327474686|gb|EGF20091.1| SsrA-binding protein [Streptococcus sanguinis SK408]
gi|328946712|gb|EGG40850.1| SsrA-binding protein [Streptococcus sanguinis SK1087]
Length = 155
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQIKNGEAWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R ++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARQMKNFN 153
>gi|296111280|ref|YP_003621662.1| SsrA-binding protein [Leuconostoc kimchii IMSNU 11154]
gi|295832812|gb|ADG40693.1| SsrA-binding protein [Leuconostoc kimchii IMSNU 11154]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + K ++ NRKAR+NY I +FEAG+ LTGTE+KS+R ++ I D + T +
Sbjct: 1 MAKKKQNT--DKYLAQNRKARFNYAIAETFEAGLSLTGTEIKSVRSGQITIGDGFVTIHD 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
LTN I Y Q N+FN P R+R+LLL K EI L A G+T+VP+K+Y
Sbjct: 59 GNAMLTNVNIASYEQGNQFNVDPIRSRQLLLHKHEIATLSKAASEAGVTIVPLKVYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+ + + +GKK YDKRE K+RD +R+ R L+
Sbjct: 118 GFAKVLIGIGRGKKKYDKREDIKRRDQERELRRRLKN 154
>gi|152980762|ref|YP_001353728.1| SsrA-binding protein [Janthinobacterium sp. Marseille]
gi|151280839|gb|ABR89249.1| SsrA(tmRNA)-binding protein [Janthinobacterium sp. Marseille]
Length = 149
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I FEAG+VL G E KS+R +V + ++Y NDEI+L S+I
Sbjct: 3 IVDNRKAFHDYFIEERFEAGVVLQGWEAKSIRAGRVQLKEAYVIVRNDEIFLFGSHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL EI +L A V R G TLVP+ +++ +G K ++ LA+G
Sbjct: 63 ATASTHITPDPVRTRKLLLKSEEIKKLSAKVERSGYTLVPLNLHY-QRGYIKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR+TEK+RD R+ +++++
Sbjct: 122 KKQHDKRDTEKQRDTQREIQSVMKQN 147
>gi|326791895|ref|YP_004309716.1| SsrA-binding protein [Clostridium lentocellum DSM 5427]
gi|326542659|gb|ADZ84518.1| SsrA-binding protein [Clostridium lentocellum DSM 5427]
Length = 156
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++ KV+++N+KA ++Y I +EAGI L GTEVKS+R ++ +S+ +N E +
Sbjct: 2 AKDRTSFKVIANNKKAYHDYFIDEVYEAGIALAGTEVKSIRQGGCSVKESFIKIKNGEAF 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ N ++ Y N FN P R RKLLL KREI++L + GMT+VP+++Y L K
Sbjct: 62 IFNMHVNPYDHGNIFNKDPLRTRKLLLHKREINKLIGETTQKGMTIVPLRVYIKGS-LVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++ LA+GKK +DKR+ K+D R R + N
Sbjct: 121 VEMGLARGKKLHDKRQDIVKKDTQRASEREFKIKN 155
>gi|153006645|ref|YP_001380970.1| SsrA-binding protein [Anaeromyxobacter sp. Fw109-5]
gi|187611468|sp|A7HGZ0|SSRP_ANADF RecName: Full=SsrA-binding protein
gi|152030218|gb|ABS27986.1| SsrA-binding protein [Anaeromyxobacter sp. Fw109-5]
Length = 165
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ NR+AR+++ I S+EAG+VLTG+EVKSLR VN+SD+YA DE++L N I
Sbjct: 18 KIVATNRRARFDFTIEDSWEAGLVLTGSEVKSLREGNVNLSDAYALPRGDELFLVNCRIG 77
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY QA F H P R+RKLL+++ E+ R+ + + G TLVP+++YF G AK++L LA+
Sbjct: 78 EYKQAAHFGHEPLRDRKLLMNRPELDRVKGKIEQRGYTLVPLRLYFKQ-GWAKVELGLAK 136
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
G+ + D+R +R+ R+ R +
Sbjct: 137 GRSHEDRRHAIAERETKREMDREISRR 163
>gi|73666719|ref|YP_302735.1| SsrA-binding protein [Ehrlichia canis str. Jake]
gi|123615152|sp|Q3YT18|SSRP_EHRCJ RecName: Full=SsrA-binding protein
gi|72393860|gb|AAZ68137.1| SsrA-binding protein [Ehrlichia canis str. Jake]
Length = 148
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 76/144 (52%), Positives = 108/144 (75%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V+ +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I+++Y T +N E+WL N +I E
Sbjct: 3 VIIENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAEAYVTEKNMELWLCNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A+ NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KGLAK + + +G
Sbjct: 63 YNHASTKNHNPTRPRKLLLRKKQIYKISGNIKNDGFTVVPLSLYFNEKGLAKAKIVIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRET K RDW+R+K R+LR
Sbjct: 123 KKLHDKRETIKTRDWNREKSRVLR 146
>gi|33592540|ref|NP_880184.1| SsrA-binding protein [Bordetella pertussis Tohama I]
gi|33601604|ref|NP_889164.1| SsrA-binding protein [Bordetella bronchiseptica RB50]
gi|39932319|sp|Q7VYA8|SSRP_BORPE RecName: Full=SsrA-binding protein
gi|39932330|sp|Q7WJ73|SSRP_BORBR RecName: Full=SsrA-binding protein
gi|33572186|emb|CAE41732.1| SsrA-binding protein [Bordetella pertussis Tohama I]
gi|33576041|emb|CAE33120.1| SsrA-binding protein [Bordetella bronchiseptica RB50]
Length = 155
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + EI+L ++
Sbjct: 3 IIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYVIVRDGEIYLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKR+T +++DW R+K R+L+
Sbjct: 122 KKLYDKRDTAREKDWQREKERVLKH 146
>gi|302334958|ref|YP_003800165.1| SsrA-binding protein [Olsenella uli DSM 7084]
gi|301318798|gb|ADK67285.1| SsrA-binding protein [Olsenella uli DSM 7084]
Length = 169
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 91/155 (58%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
KK +S NR AR++Y I ++EAGI LTGTEVKS+R I+DS+ E++
Sbjct: 14 KGPERDKKTISRNRTARHDYEIGETWEAGIELTGTEVKSIRERPCQITDSFCIVRGGELF 73
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L +I Y +N P R R+LL+ +R+I + +R G +LVP+++YF+ + K
Sbjct: 74 LVGVHIHPYSNGGVWNVDPDRRRRLLMHRRQIDLIDQRLRTKGSSLVPLELYFDERNRVK 133
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ + L +GKK YDKR +RD +R+ R L+E +
Sbjct: 134 LRVGLGKGKKLYDKRADMARRDANREIQRALKERS 168
>gi|258593295|emb|CBE69634.1| trans-translation protein, binds tmRNA and tRNA (SsrA-binding
protein) [NC10 bacterium 'Dutch sediment']
Length = 157
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 69/146 (47%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K+++ NR+ARY Y I EAGI LTGTEVKSLR ++ DSYA E++E +L N +I
Sbjct: 7 KRILCSNRRARYEYQIEEVIEAGIALTGTEVKSLREGGADLKDSYAAIEDEEAYLFNCHI 66
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y NRFN P R RKLLL + EI RL V+ G+T++P+ +Y + K++LALA
Sbjct: 67 SPYAAGNRFNPDPNRTRKLLLHREEIMRLMGKVQTKGLTVIPLSVYVAGR-KIKVELALA 125
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156
+GKK YDKRET K+R ++ ++ R
Sbjct: 126 RGKKLYDKRETLKQRAMTKEMAQLAR 151
>gi|270308651|ref|YP_003330709.1| ssrA binding protein (smpB) [Dehalococcoides sp. VS]
gi|270154543|gb|ACZ62381.1| ssrA binding protein (smpB) [Dehalococcoides sp. VS]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKA +NY + +EAGIVL GTE+KSLR +VN+ D+Y + E+WL N++I
Sbjct: 6 TLTTNRKAFHNYFLEEKYEAGIVLLGTEIKSLRGGRVNMGDAYVKPQGGELWLVNAHISA 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +H P R RKLL+ ++EI L + V+ G+TLVP++IY +AK++L+L +G
Sbjct: 66 YQCSGHTSHEPLRERKLLMHRKEIALLMSKVKEKGLTLVPVRIYLKND-IAKVELSLGRG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR+T KRD +R+ R ++ N
Sbjct: 125 KKLYDKRDTITKRDTERELEREIKHRN 151
>gi|259046368|ref|ZP_05736769.1| SsrA-binding protein [Granulicatella adiacens ATCC 49175]
gi|259037005|gb|EEW38260.1| SsrA-binding protein [Granulicatella adiacens ATCC 49175]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 64/152 (42%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KV++ NRKA ++Y I+ + EAG+VLTGTE+KS+R +++N+ D Y + + E +L
Sbjct: 3 KGTNDKVLAQNRKASHDYTILETIEAGMVLTGTEIKSVRQARINLKDGYVSLKQGEAFLV 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I + Q FNH P R RKLLL K++I+ L V++ G T+VP+K+Y G+AK+
Sbjct: 63 GVHISPFEQGTLFNHDPLRTRKLLLHKKQINYLLEQVKQAGNTVVPLKVYIK-NGVAKLL 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +A+GKKNYDKR+ K++D R+ R ++E
Sbjct: 122 IGVAKGKKNYDKRDALKQKDMKREIDRAMKER 153
>gi|257069172|ref|YP_003155427.1| SsrA-binding protein [Brachybacterium faecium DSM 4810]
gi|256559990|gb|ACU85837.1| SsrA-binding protein [Brachybacterium faecium DSM 4810]
Length = 168
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 63/150 (42%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P K +++ N++AR++Y I ++EAGIVL+GTEVKSLR ++ D Y + E+W+ N+
Sbjct: 17 PRKMLIASNKRARHDYFIDHTWEAGIVLSGTEVKSLRDRGASLIDGYCYVDAGEVWMDNA 76
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y++ NH RR RKLLL K+EI +L + R G T+VP++IYF AK+ +
Sbjct: 77 HIAPYVKGTWTNHAARRKRKLLLHKQEIEKLASKSREKGFTIVPLEIYFLGSH-AKVLIG 135
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GKK +DKR+T +++ R+ R +R+
Sbjct: 136 LARGKKEWDKRQTLREQQDLREAQRAMRQR 165
>gi|325294240|ref|YP_004280754.1| SsrA-binding protein [Desulfurobacterium thermolithotrophum DSM
11699]
gi|325064688|gb|ADY72695.1| SsrA-binding protein [Desulfurobacterium thermolithotrophum DSM
11699]
Length = 152
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 69/144 (47%), Positives = 96/144 (66%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA Y+Y I+ +EAGI L GTEVKSLR K N+ DS+ EN E +L N+YI Y
Sbjct: 8 IKNKKAFYDYEILEKYEAGIELKGTEVKSLREGKANLRDSFVRIENGEAFLFNAYIAPYT 67
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
N FNH P R RKLLL K EI RL + G+T+VP+++YFN +G K+++AL +GKK
Sbjct: 68 HGNLFNHEPNRKRKLLLHKSEIKRLLGKTQEKGLTIVPLRMYFNKRGKVKVEIALVKGKK 127
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKRE K+R+ +R+ + ++ +
Sbjct: 128 KYDKREAIKRRELEREAQKAMKYY 151
>gi|163840106|ref|YP_001624511.1| SsrA-binding protein [Renibacterium salmoninarum ATCC 33209]
gi|189046839|sp|A9WPU0|SSRP_RENSM RecName: Full=SsrA-binding protein
gi|162953582|gb|ABY23097.1| SsrA-binding protein [Renibacterium salmoninarum ATCC 33209]
Length = 156
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/153 (47%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KVV+ NRKAR+ YH+ ++EAG+ L GTEVKSLR + N++D +ATF DE+WL
Sbjct: 3 KESGRKVVATNRKARHEYHLGDTYEAGLALMGTEVKSLREGRANLTDGFATFYGDELWLE 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
YIPEYL + NH RR RKLLL + E+ ++ R G TLVP+++YF G AK++
Sbjct: 63 AVYIPEYLNGSWNNHSARRRRKLLLHRAELIKISHKTREAGFTLVPLQLYFLD-GKAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ALA+GK++YDKR+ ++ R+ R +RE N
Sbjct: 122 IALAKGKRDYDKRQALREAQDTRESLRAMREKN 154
>gi|303249277|ref|ZP_07335510.1| SsrA-binding protein [Desulfovibrio fructosovorans JJ]
gi|302489316|gb|EFL49272.1| SsrA-binding protein [Desulfovibrio fructosovorans JJ]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +K+V+ N+KAR+ Y + +EAG+ LTG+EVKSLR +V+ D Y FE
Sbjct: 1 MTAKE---SGEKLVAQNKKARHLYEFLEKYEAGMALTGSEVKSLRAGRVSFKDGYVKFEG 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE +L +I Y A H P R RKLLL EI L + V + G+T+VP++IYF
Sbjct: 58 DEAFLVGVHIGVYENAGYAGHEPERRRKLLLHAAEIRTLRSRVEQKGLTVVPVRIYFK-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK ++ALA+GKK +D+R+ K RD DR R L H
Sbjct: 117 GRAKTEIALARGKKVFDRRDDLKNRDLDRDAARELARH 154
>gi|212634277|ref|YP_002310802.1| SsrA-binding protein [Shewanella piezotolerans WP3]
gi|212555761|gb|ACJ28215.1| SmpB protein [Shewanella piezotolerans WP3]
Length = 198
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 3/160 (1%)
Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY
Sbjct: 35 MAKKNAKNSKNSSASIARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFL 94
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E +L I + P R+RKLLL ++E+ +L V R G ++VP+ +Y+
Sbjct: 95 RDGEAFLFGCTIAPLNTASTHVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 154
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI++ L +GKK++DKRE K R+W +K R +++
Sbjct: 155 QKGAWVKIEIGLGKGKKDHDKREDTKDREWQIEKSRTMKK 194
>gi|330937922|gb|EGH41710.1| SsrA-binding protein [Pseudomonas syringae pv. pisi str. 1704B]
Length = 152
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 92/147 (62%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++ E WL +I
Sbjct: 3 TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKDGEAWLMGCHITP 62
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLL+KRE+ +L ++V++ G V + +Y+ L K ++AL +
Sbjct: 63 LKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKEH-LVKCEIALGK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR TE++RD DR+ R +R
Sbjct: 122 GKKEYDKRHTERERDSDRELQRAVRSK 148
>gi|167761607|ref|ZP_02433734.1| hypothetical protein CLOSCI_04018 [Clostridium scindens ATCC 35704]
gi|167660750|gb|EDS04880.1| hypothetical protein CLOSCI_04018 [Clostridium scindens ATCC 35704]
Length = 161
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 97/155 (62%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +++ EN E++
Sbjct: 6 KMAKMNGKMIANNKKAYHDYFILENYEAGIALHGTEVKSLRMGKCSIKEAFIRVENGEVY 65
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ +I Y + N FN P R RKLLL K EI++L + G+ +VP+K+YF L K
Sbjct: 66 IYGMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLLGKTKEKGIAIVPLKVYFKGS-LVK 124
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+++ LA+GKK YDKR+ ++D R+ R + N
Sbjct: 125 VEIGLAKGKKLYDKRQDIARKDQQREAQRDFKVRN 159
>gi|320536525|ref|ZP_08036552.1| SsrA-binding protein [Treponema phagedenis F0421]
gi|320146625|gb|EFW38214.1| SsrA-binding protein [Treponema phagedenis F0421]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K+++ N+KA +NY + S E G+VL GTEVKS+R +++ DS+A N E+WL
Sbjct: 2 KGQGRKIIAKNKKAFFNYTVEDSIECGLVLEGTEVKSVREGRISFPDSFAEIINLEVWLK 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N I EY ++ FNH P R +KLLL K EI RL G TL+P++ Y G+ K+
Sbjct: 62 NFSIAEYPFSSIFNHDPNRPKKLLLHKDEIKRLQRKTEEKGYTLIPLEFYLK-NGIIKVQ 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L + +GKK +DKR K+RD R+ R LRE N
Sbjct: 121 LGICKGKKLFDKRADIKERDIHRETQRELRERN 153
>gi|294084110|ref|YP_003550868.1| SmpB protein [Candidatus Puniceispirillum marinum IMCC1322]
gi|292663683|gb|ADE38784.1| SmpB protein [Candidatus Puniceispirillum marinum IMCC1322]
Length = 155
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 72/146 (49%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKAR+ Y I EAG++L G+EVKSLR + +I++SYA ++ + L N+ IP Y
Sbjct: 11 IAENRKARHEYEIEDRIEAGLILLGSEVKSLRTGRASIAESYAGEDSGRLMLFNANIPIY 70
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
A R NH P+R R+LL+ RE ++L +RR+GMTLVP+ +YFN KG+AKI + LA+G+
Sbjct: 71 EPA-RVNHEPKRPRELLVKARERNKLLGLIRREGMTLVPLSLYFNDKGVAKISVGLAKGR 129
Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159
K DKR+ K RDW R K R+LR N
Sbjct: 130 KKQDKRQAAKDRDWGRDKARLLRGKN 155
>gi|56479236|ref|YP_160825.1| SsrA-binding protein [Aromatoleum aromaticum EbN1]
gi|67461303|sp|Q5NYE0|SSRP_AZOSE RecName: Full=SsrA-binding protein
gi|56315279|emb|CAI09924.1| tmRNA-binding protein [Aromatoleum aromaticum EbN1]
Length = 148
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I ++EAG+VL G EVK++R + NI ++Y +E+++ +I
Sbjct: 3 IIDNRKAFHDYFIEETYEAGLVLEGWEVKAIRAGRANIKEAYVILRGEELFILGMHISAL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLL+ +EI +L V R G TLVP+ +++ AKG K + LA+G
Sbjct: 63 QSASTHVETDPVRTRKLLMHAKEIAKLIGKVERAGFTLVPLDLHY-AKGRIKATIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK YDKRE+EK+RDW+R K R++R
Sbjct: 122 KKQYDKRESEKERDWERDKARLMR 145
>gi|134094683|ref|YP_001099758.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
gi|133738586|emb|CAL61631.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
Length = 149
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ DNRKA ++Y I +EAGIVL G EVK++R +V + ++Y ++EI+L +++
Sbjct: 2 TIVDNRKAFHDYFIEDRYEAGIVLQGWEVKAIRAGRVQLREAYVIARDNEIYLFGAHVSA 61
Query: 73 YLQANRFNHYP-RRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ F+H R RKLLL +I +L + V + G T+VP+ +++ G K D+ALA+
Sbjct: 62 LNSTSSFDHPEAIRTRKLLLHAAQIKKLVSKVDQSGFTMVPVNLHWVG-GRVKCDIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR TEK+RDW R++ +I++ H
Sbjct: 121 GKKEYDKRNTEKERDWQREQQKIMKIH 147
>gi|149183606|ref|ZP_01862026.1| SsrA-binding protein [Bacillus sp. SG-1]
gi|148848696|gb|EDL62926.1| SsrA-binding protein [Bacillus sp. SG-1]
Length = 157
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR+++ I ++EAG+VL GTE+K++R +VN+ DS+A + E+++ N +I
Sbjct: 7 KLIAQNKKARHDFTIEETYEAGLVLQGTEIKAIRAGRVNLKDSFARIQQGEVFVHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL K++I L + G +LVP+K+Y G+AK+ + LA+
Sbjct: 67 PYEQGNRYNHEPLRTRKLLLHKKQIATLIGETKEAGYSLVPLKLYIK-NGVAKLLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K++D +R R L +
Sbjct: 126 GKKKYDKREDLKRKDANRTIQRELAQR 152
>gi|39932288|sp|Q7UH38|SSRP_RHOBA RecName: Full=SsrA-binding protein
Length = 176
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 95/152 (62%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
P V++NRKA++ Y I+ S E G++L G+EVKS+R K+++ +++ N E+WL
Sbjct: 25 NQPNITPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 84
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
S I Y A +NH PRR RKLL+ +E + G+TL+P+++YF+ +GLAK
Sbjct: 85 GSDIAHYNNAGMWNHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKCV 144
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +GKK +DKRET KKR+ DR R +R
Sbjct: 145 MGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 176
>gi|254483105|ref|ZP_05096339.1| SsrA-binding protein [marine gamma proteobacterium HTCC2148]
gi|214036627|gb|EEB77300.1| SsrA-binding protein [marine gamma proteobacterium HTCC2148]
Length = 163
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P V++ NR+A ++YH++ +FEAG+ L+G EVKSLR+ K +++DSY ++
Sbjct: 4 MAKKKSHKP-SNVIAQNRRASFDYHLLENFEAGVALSGWEVKSLRMGKADLADSYVLMKD 62
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S+I + + P R RKLLL+K+E+ +L AV + G T V ++Y+
Sbjct: 63 GEAFLLGSHIVPLDTVSTHYVTDPSRTRKLLLNKKELAKLQVAVTQKGQTCVCTQLYWKG 122
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K +ALA+GKK +DKR+++K +DW+RQK RI+R++
Sbjct: 123 H-LVKARIALAEGKKAHDKRDSQKDKDWNRQKQRIVRDN 160
>gi|319793522|ref|YP_004155162.1| ssra-binding protein [Variovorax paradoxus EPS]
gi|315595985|gb|ADU37051.1| SsrA-binding protein [Variovorax paradoxus EPS]
Length = 158
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++DN+KA YNY FEAGIVL G EVKSLR KV ++D Y +
Sbjct: 1 MATKKQDTSSR--IADNKKAAYNYFFEERFEAGIVLEGWEVKSLREGKVQLTDGYVVIRD 58
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+++ I + N R +KLLL K EI RL V + G TLVP+ +++ A
Sbjct: 59 GELFVVGLQINPLKSASTHVNPDSIRTKKLLLHKEEIRRLVGKVEQKGYTLVPLNLHWKA 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K D+ALA+GK +DKR+T K R+ R+ R ++ +
Sbjct: 119 -GKVKCDIALAKGKAEHDKRDTIKDREGKREVERAMKSRS 157
>gi|82702332|ref|YP_411898.1| SsrA-binding protein [Nitrosospira multiformis ATCC 25196]
gi|123544666|sp|Q2Y9R5|SSRP_NITMU RecName: Full=SsrA-binding protein
gi|82410397|gb|ABB74506.1| SsrA-binding protein [Nitrosospira multiformis ATCC 25196]
Length = 147
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE- 72
+ N+KA ++Y I EAG VL G EVK++R + + ++Y N E++L ++
Sbjct: 3 IVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVSPL 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL EI RL V R G TLVP+ I++ KG K+++ LA+G
Sbjct: 63 LAASTHIQPDPVRTRKLLLHAEEIKRLIGKVERAGYTLVPLDIHYK-KGRIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRE+EK+++W+R K R++R
Sbjct: 122 KKQHDKRESEKQKEWERDKQRLMR 145
>gi|282858103|ref|ZP_06267298.1| SsrA-binding protein [Pyramidobacter piscolens W5455]
gi|282584025|gb|EFB89398.1| SsrA-binding protein [Pyramidobacter piscolens W5455]
Length = 157
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 73/146 (50%), Positives = 99/146 (67%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
VV+ NRKAR++Y +V +FE G+VLTGTE+KS+R KVN+ D YA FE E+WL N +I
Sbjct: 8 VVALNRKARHDYFVVDTFECGVVLTGTEIKSVRTGKVNLKDGYAKFERGELWLMNVHISP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y +A+ + H PR+NRKLLL K E+ RL A V+ G TL+P+ +Y +AK+ LALAQG
Sbjct: 68 YEKASWYQHDPRQNRKLLLHKSELRRLGARVKEKGFTLIPLSMYLKEGRIAKVALALAQG 127
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K +D+R+ +RD R R LR
Sbjct: 128 KNAHDRRDAIIERDAKRAIARELRNR 153
>gi|119356646|ref|YP_911290.1| SsrA-binding protein [Chlorobium phaeobacteroides DSM 266]
gi|166222377|sp|A1BEN9|SSRP_CHLPD RecName: Full=SsrA-binding protein
gi|119353995|gb|ABL64866.1| SsrA-binding protein [Chlorobium phaeobacteroides DSM 266]
Length = 157
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + + + NRKAR+ +HI+ + AGI L G+EVKS+R K ++++SYA +
Sbjct: 1 MSKKQQPQTFVQAI-HNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHH 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N I Y + +R+RKLLL++ EI +L + G+TLVP+K +FN +
Sbjct: 60 GEVWLENMQITPYEHNHLDTLEAKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ KI++ALA+GKK YDKRET K RD +RQ ++ + +
Sbjct: 120 GILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY 157
>gi|163856826|ref|YP_001631124.1| SsrA-binding protein [Bordetella petrii DSM 12804]
gi|163260554|emb|CAP42856.1| SsrA-binding protein [Bordetella petrii]
Length = 151
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 89/145 (61%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I FEAG+VL G EVK++R ++V + +SY + E++L ++
Sbjct: 3 IIDNRKATHDYFIEDRFEAGLVLQGWEVKAIRENRVQLKESYVIVRDGELFLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHVHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKR+T +++DW R+K RI++
Sbjct: 122 KKLYDKRDTAREKDWQREKERIMKH 146
>gi|295092073|emb|CBK78180.1| SsrA-binding protein [Clostridium cf. saccharolyticum K10]
Length = 154
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K+V++N+KA ++Y I +E GI L GTEVKS+R+ K +I +++ EN ++++
Sbjct: 2 GTNNFKLVANNKKAFHDYFIDDKYETGIELYGTEVKSIRMGKCSIKEAFVRIENGQVYVY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R RKLL+ ++EI RL + ++ G TLVP+++Y L K++
Sbjct: 62 GMHISPYEKGNIFNRDPLRQRKLLMHRKEIDRLVSKIKEKGFTLVPLQVYLKGS-LVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ LA+GKK YDKRE K+D R+ R +
Sbjct: 121 IGLARGKKLYDKREDLAKKDARREIERGFKAK 152
>gi|33596193|ref|NP_883836.1| SsrA-binding protein [Bordetella parapertussis 12822]
gi|39932325|sp|Q7WA41|SSRP_BORPA RecName: Full=SsrA-binding protein
gi|33573196|emb|CAE36851.1| SsrA-binding protein [Bordetella parapertussis]
Length = 155
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R +V++ +SY + EI+L ++
Sbjct: 3 IIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVHLKESYVIVRDGEIYLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKR+T +++DW R+K R+L+
Sbjct: 122 KKLYDKRDTAREKDWQREKERVLKH 146
>gi|258507938|ref|YP_003170689.1| SsrA-binding protein [Lactobacillus rhamnosus GG]
gi|257147865|emb|CAR86838.1| SsrA-binding protein [Lactobacillus rhamnosus GG]
gi|259649265|dbj|BAI41427.1| SsrA-binding protein [Lactobacillus rhamnosus GG]
Length = 157
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N
Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E WL N I Y + N FN P RNRKLLL K+EI +L R G+TLVP+++Y
Sbjct: 60 NEAWLENVRISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQGVTLVPLRMYLK-H 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GK NYDKRET K++D +R+ R L+
Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 156
>gi|227546358|ref|ZP_03976407.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC
55813]
gi|227213339|gb|EEI81211.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC
55813]
Length = 158
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65
+K+++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL
Sbjct: 3 KETGEKLIAQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K
Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 122 EIALARGKKEFDKRQALREEQDKRETLRAMRYAN 155
>gi|325694813|gb|EGD36718.1| SsrA-binding protein [Streptococcus sanguinis SK150]
Length = 155
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQIKNGEAWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKR++ K+R+ +R R ++ N
Sbjct: 126 GKHDYDKRDSIKRREQNRDIARQMKNFN 153
>gi|237653292|ref|YP_002889606.1| SsrA-binding protein [Thauera sp. MZ1T]
gi|237624539|gb|ACR01229.1| SsrA-binding protein [Thauera sp. MZ1T]
Length = 148
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 94/144 (65%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ +NRKA ++Y I EAGIVL G EVK++R + NI +SY +EI++ +I
Sbjct: 3 IIENRKALHDYFIEEKHEAGIVLEGWEVKAIRAGRSNIKESYVVIRAEEIFVFGMHITPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
++ H P R RKLLL K+EI RL V R G TLVP+ +++ GL K+++ LA+G
Sbjct: 63 STASSHVRHDPTRTRKLLLHKKEIARLIGKVERAGYTLVPLDLHYK-NGLVKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRE EKK+DW+R+K R++R
Sbjct: 122 KKLHDKREDEKKKDWEREKQRLMR 145
>gi|312864771|ref|ZP_07725002.1| SsrA-binding protein [Streptococcus downei F0415]
gi|311099898|gb|EFQ58111.1| SsrA-binding protein [Streptococcus downei F0415]
Length = 160
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + V++ N+KAR++Y IV + EAG+VLTGTE+KS+R S++ + D YA +N +
Sbjct: 1 MAKKPSQTNNVLAQNKKARHDYSIVDTIEAGMVLTGTEIKSVRASRIQLKDGYAQIKNGQ 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N I + Q N +N P R RKLLL KREI RL ++ GMTL+P+K+Y +G
Sbjct: 61 AWLVNVRIAPFEQGNIWNQDPERTRKLLLKKREITRLENELKGTGMTLIPLKVYIK-RGF 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI L LA+GK +YDKRE+ K+RD +R R+++ N
Sbjct: 120 AKILLGLAKGKHDYDKRESIKRRDQERDMKRVMKNFN 156
>gi|147669935|ref|YP_001214753.1| SsrA-binding protein [Dehalococcoides sp. BAV1]
gi|146270883|gb|ABQ17875.1| SsrA-binding protein [Dehalococcoides sp. BAV1]
Length = 182
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I
Sbjct: 34 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 93
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G
Sbjct: 94 YECSGHTSHEPMRERKLLMHRKEIVLLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 152
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR+T KRD +R+ R ++ N
Sbjct: 153 KKLYDKRDTVTKRDTERELEREVKYRN 179
>gi|322411315|gb|EFY02223.1| SsrA-binding protein [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 155
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 LLAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K +YDKRET K+R+ DR R+++ N
Sbjct: 127 KHDYDKRETIKRREQDRDIKRVMKSVN 153
>gi|291519267|emb|CBK74488.1| SsrA-binding protein [Butyrivibrio fibrisolvens 16/4]
Length = 155
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 98/153 (64%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K++++N+KA + Y + +EAGI L GTEVKS+R+ + +I +++ +N E+++
Sbjct: 2 NKEGRKLIANNKKAYHEYFMEEEYEAGIELHGTEVKSMRLGQCSIKEAFVRIDNGEMFIY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
++ Y + N FN P R RKLLL K EI+RL + ++ G T+VP+++Y N GL K+
Sbjct: 62 QMHVNPYEKGNIFNRDPLRPRKLLLHKSEINRLLSKIKESGYTIVPLEVYLN-NGLVKVK 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ALA+GKK YDKR +K+D R+ R + N
Sbjct: 121 IALAKGKKLYDKRADIQKKDMKREAERDFKIRN 153
>gi|117926750|ref|YP_867367.1| SsrA-binding protein [Magnetococcus sp. MC-1]
gi|254778367|sp|A0LDB8|SSRP_MAGSM RecName: Full=SsrA-binding protein
gi|117610506|gb|ABK45961.1| SsrA-binding protein [Magnetococcus sp. MC-1]
Length = 150
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+++++NRKAR+NY I+ EAGIVL GTEVKS+R K+ ++DSYA +E++ N I
Sbjct: 4 RLIAENRKARFNYEIIEKIEAGIVLQGTEVKSIRAGKMTLADSYAVVNREELYWLNGQIA 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N NH P R+RKLLL +EI RL V+ G++++P++ Y+ K++L +A+
Sbjct: 64 HYEHGNIHNHEPFRSRKLLLRHKEISRLIGLVKEKGLSIIPLRAYWKGS-KVKLELGIAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR T K+RDW R+K RIL+ +
Sbjct: 123 GKKLYDKRATTKERDWQREKQRILKTN 149
>gi|304440568|ref|ZP_07400454.1| SsrA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304370944|gb|EFM24564.1| SsrA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 150
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+KV++ NRKAR+++ I +S+EAGIVL GTEVKSLR K N+ D+Y ++ E+++ +I
Sbjct: 3 EKVLATNRKARHDFFIEKSYEAGIVLVGTEVKSLRRGKCNLKDAYVEIKDGEVFVEGMHI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N FN P R RKLLL+K EI +L V + G T+VP+K Y +G K+++ALA
Sbjct: 63 SPYEMGNIFNVDPLRRRKLLLNKAEIRKLARDVDQKGFTIVPLKAYL-VRGRVKLEIALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKR+ KRD D + + L+++N
Sbjct: 122 RGKKLYDKRDAMAKRDSDMRIRKALKDYN 150
>gi|184154847|ref|YP_001843187.1| SsrA-binding protein [Lactobacillus fermentum IFO 3956]
gi|227514414|ref|ZP_03944463.1| SsrA-binding protein SmpB [Lactobacillus fermentum ATCC 14931]
gi|260663123|ref|ZP_05864015.1| SsrA-binding protein [Lactobacillus fermentum 28-3-CHN]
gi|238692949|sp|B2GAM5|SSRP_LACF3 RecName: Full=SsrA-binding protein
gi|183226191|dbj|BAG26707.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|227087280|gb|EEI22592.1| SsrA-binding protein SmpB [Lactobacillus fermentum ATCC 14931]
gi|260552315|gb|EEX25366.1| SsrA-binding protein [Lactobacillus fermentum 28-3-CHN]
Length = 157
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ +++ N+KAR++Y + +FEAG+VLTGTE+KS+R +V + D YA F N
Sbjct: 1 MAKKNHQGLDANLIAQNKKARHDYTVTDTFEAGLVLTGTEIKSVRARRVTLKDGYAQFHN 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N +I E+ N FNH P RNRKLLL K+E+ +L + G+TLVP+K+Y
Sbjct: 61 GELWLMNVHIAEFAGGNIFNHDPLRNRKLLLHKKELKKLQGELTAKGVTLVPLKMYLK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L LAQGK YDKR KKR+ DRQ R+++ +
Sbjct: 120 GYAKVLLGLAQGKHEYDKRNAIKKREQDRQIDRVMKHY 157
>gi|225631090|ref|ZP_03787820.1| SsrA-binding protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
gi|225591215|gb|EEH12367.1| SsrA-binding protein [Wolbachia endosymbiont of Muscidifurax
uniraptor]
Length = 149
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 108/146 (73%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V+++NRKAR+ Y I+ FEAG+VL +EVKSLR KVNISD+Y +N E+WL N +I E
Sbjct: 3 VIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y ANR NH P+R RKLLL K+EI++L ++ G+T+VP+ +YFN KG AK +A+ +G
Sbjct: 63 YKAANRKNHKPKRERKLLLHKQEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR T K+R+WDR+K R+ + +
Sbjct: 123 KKLYDKRATIKQREWDREKSRLSKNN 148
>gi|227505565|ref|ZP_03935614.1| SsrA-binding protein [Corynebacterium striatum ATCC 6940]
gi|227197862|gb|EEI77910.1| SsrA-binding protein [Corynebacterium striatum ATCC 6940]
Length = 166
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 100/150 (66%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
++ NR+AR++Y I+ + E G+VL GTE+KS+R K+++ D++AT ++ E+++ N
Sbjct: 12 DNNTTLATNRRARHDYKILDTLECGMVLVGTEIKSMREGKISLVDAFATIDDGEVYIRNL 71
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY Q NH P+R RKLLL +REI +L VR TL+P+K+Y G AK +L
Sbjct: 72 HIPEYSQGTWTNHSPKRTRKLLLHRREIDKLMGQVRDGNKTLIPLKVYLKD-GRAKCELG 130
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LAQGK++YDKRE K+RD DR+ R L
Sbjct: 131 LAQGKQDYDKREAIKRRDQDREITRELGRR 160
>gi|289422950|ref|ZP_06424772.1| SsrA-binding protein [Peptostreptococcus anaerobius 653-L]
gi|289156630|gb|EFD05273.1| SsrA-binding protein [Peptostreptococcus anaerobius 653-L]
Length = 151
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KV++ N+KAR++Y I +E GI L GTEVKS+R ++N+ + YA+ +N E++L +
Sbjct: 3 GIKVLATNKKARHDYFIDEVYECGIELKGTEVKSIRQGRINLKEGYASVDNSEVFLKQVH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q NRFN P R RKLLL K EI +L A G +LVPM++Y G K++L L
Sbjct: 63 ISPYEQGNRFNVDPLRVRKLLLHKSEIRKLIGATTIKGYSLVPMRMYLK-NGKVKLELGL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GKK YDKR+ K+D R+ R ++
Sbjct: 122 AKGKKLYDKRQDLAKKDAMRRIERESKDR 150
>gi|167626277|ref|YP_001676777.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25017]
gi|189046828|sp|B0TY34|SSRP_FRAP2 RecName: Full=SsrA-binding protein
gi|167596278|gb|ABZ86276.1| SsrA (tmRNA)-binding protein [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 157
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ ++ N++A ++Y I+ FEAGIVL G EVKS+R KV + DS+ + E W
Sbjct: 2 SKHKVSPATIARNKRAFHDYTILEKFEAGIVLQGWEVKSIRAGKVQMIDSHVHIKRGEAW 61
Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N P + NRKLLL++REI ++ + + G T VP+ +Y+
Sbjct: 62 LFNCLITPLLSASTHVVADASANRKLLLNRREIDKIMGRIEQKGFTCVPLAMYWKGP-RV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALAQGKK +DKR+ +K +DW R+K RI ++
Sbjct: 121 KVEIALAQGKKVHDKRQAQKDKDWAREKDRIFKK 154
>gi|310639664|ref|YP_003944422.1| ssra-binding protein [Paenibacillus polymyxa SC2]
gi|309244614|gb|ADO54181.1| SsrA-binding protein [Paenibacillus polymyxa SC2]
Length = 159
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 77/159 (48%), Positives = 102/159 (64%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K+ G KV++ N+KA ++Y I ++EAG+VLTGTE+KSLR + NISD++AT N
Sbjct: 1 MGKKADG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSLRNGRSNISDAFATIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EI + N +I + Q NR N P R RKLLL K +I +L +++G T+VP+KIY
Sbjct: 57 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLIGLSKQEGYTIVPLKIYVR- 115
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GKK YDKRET KRD R R LRE
Sbjct: 116 NGYAKLLLGLGRGKKQYDKRETAAKRDAQRDIQRALREK 154
>gi|227486858|ref|ZP_03917174.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51867]
gi|227541979|ref|ZP_03972028.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51866]
gi|227093184|gb|EEI28496.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51867]
gi|227182422|gb|EEI63394.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51866]
Length = 163
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + N VV+ NR+AR++Y+I+ ++E GI L GTE+K++R VN++D++A E+
Sbjct: 1 MGKKKKKNAGGNVVATNRRARHDYNILETYECGISLVGTEIKAIREGHVNLADAFAIIEH 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N IPEY NH P R+RKLLL ++EI L VR TLVP+K+YF
Sbjct: 61 GEVWLRNLNIPEYSLGTWTNHRPMRHRKLLLHRKEIDSLAGKVRDGNKTLVPLKLYFKD- 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K +LALA+GK++YDKRE K+R +R+ R L
Sbjct: 120 GLLKAELALAEGKQDYDKREDIKRRTEEREVVRELGRR 157
>gi|307701719|ref|ZP_07638733.1| SsrA-binding protein [Mobiluncus mulieris FB024-16]
gi|307612977|gb|EFN92232.1| SsrA-binding protein [Mobiluncus mulieris FB024-16]
Length = 165
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
N+KA ++Y + EAG+ LTGTEVK+LR+ + ++S+++ + E WL + IPEY
Sbjct: 19 RNKKAAHDYFLEDRLEAGLSLTGTEVKALRMGRASLSEAWVEIDRGEAWLQGANIPEYFY 78
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ NH P+R R+LLL KREI RL V G T+VP+++YF G AK+++ALA+GK+
Sbjct: 79 GSWTNHSPKRKRRLLLHKREILRLENGVAAKGYTVVPVELYFIG-GRAKVEIALARGKQE 137
Query: 136 YDKRETEKKRDWDRQKHRILREHN 159
+DKR+T ++R+ +R+ R LR+ N
Sbjct: 138 WDKRQTIREREDNREAQRALRDAN 161
>gi|315223049|ref|ZP_07864928.1| SsrA-binding protein [Streptococcus anginosus F0211]
gi|315187999|gb|EFU21735.1| SsrA-binding protein [Streptococcus anginosus F0211]
Length = 155
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + E G+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIETGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQDPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R ++ +N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARTMKAYN 153
>gi|114769602|ref|ZP_01447212.1| SsrA-binding protein [alpha proteobacterium HTCC2255]
gi|114549307|gb|EAU52189.1| SsrA-binding protein [alpha proteobacterium HTCC2255]
gi|297184275|gb|ADI20393.1| tmRNA-binding protein [uncultured alpha proteobacterium
EB080_L27A02]
gi|297184332|gb|ADI20449.1| tmRNA-binding protein [uncultured alpha proteobacterium
EB080_L43F08]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 82/159 (51%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + K++ +NR+ARY+Y + E GI+L G+EVK+LR+ NI++SY EN
Sbjct: 1 MAKK-KTPDNNKMIVENRRARYDYAVEDVLECGIILMGSEVKALRIGSANIAESYVDIEN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL NSYI Y QA F H RR RKLL+SK++I +L+ A R+ MT+V +K+YFN K
Sbjct: 60 GELWLINSYISLYTQAQNFGHEERRRRKLLVSKKQISKLWQAKGREAMTIVALKMYFNDK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+ + A+GKK DKRETEKKRDW+RQK R+LREH+
Sbjct: 120 GKVKLLIGTAKGKKQSDKRETEKKRDWNRQKSRLLREHS 158
>gi|311031850|ref|ZP_07709940.1| SsrA-binding protein [Bacillus sp. m3-13]
Length = 155
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV+S N+KA ++Y I +++E G+VL GTE+KS+R +VN+ DS+A +N E++L N +I
Sbjct: 7 KVISTNKKANHDYFIEQTYETGMVLQGTEIKSMRAGRVNLKDSFARVQNGEVFLHNLHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL +++I++L + +G LVP+KIY G AK+ + L +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKQINQLIGLTKEEGYALVPLKIYLK-NGYAKLLIGLGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR+ KK++ R R RE
Sbjct: 126 GKKKYDKRDDLKKKEAKRDIERAFRER 152
>gi|171741046|ref|ZP_02916853.1| hypothetical protein BIFDEN_00112 [Bifidobacterium dentium ATCC
27678]
gi|283455569|ref|YP_003360133.1| smpB SsrA-binding protein [Bifidobacterium dentium Bd1]
gi|306823391|ref|ZP_07456766.1| SsrA-binding protein [Bifidobacterium dentium ATCC 27679]
gi|309802588|ref|ZP_07696692.1| SsrA-binding protein [Bifidobacterium dentium JCVIHMP022]
gi|171276660|gb|EDT44321.1| hypothetical protein BIFDEN_00112 [Bifidobacterium dentium ATCC
27678]
gi|283102203|gb|ADB09309.1| smpB SsrA-binding protein [Bifidobacterium dentium Bd1]
gi|304553098|gb|EFM41010.1| SsrA-binding protein [Bifidobacterium dentium ATCC 27679]
gi|308220652|gb|EFO76960.1| SsrA-binding protein [Bifidobacterium dentium JCVIHMP022]
Length = 159
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65
K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+ EIWL
Sbjct: 3 KEQGTKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDRRGEIWL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ IPEYL NH P+R RKLLL +I +L G T+VP+ +YF G K
Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHAEQIAKLARQSEAKGYTIVPLSLYFKD-GRVKA 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 122 EIALARGKKEFDKRQALREEQDKREALRAMRYAN 155
>gi|261363744|ref|ZP_05976627.1| SsrA-binding protein [Neisseria mucosa ATCC 25996]
gi|288568318|gb|EFC89878.1| SsrA-binding protein [Neisseria mucosa ATCC 25996]
Length = 148
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R +V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDQLEAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI++L R G T+VP+ ++F +G K+++ LA+G
Sbjct: 63 PTASTHVKPDPVRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHFT-RGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146
>gi|146276180|ref|YP_001166339.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17025]
gi|187629781|sp|A4WNS0|SSRP_RHOS5 RecName: Full=SsrA-binding protein
gi|145554421|gb|ABP69034.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17025]
Length = 157
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 114/157 (72%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ +P K++++NR+AR++Y I EAGI+L G+EVKSLR NI +SYA+ EN E
Sbjct: 1 MVKHSDPNSKLIAENRRARFDYFIEEEIEAGIILMGSEVKSLRQGGSNIGESYASVENGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL N YI YLQA + H RR RKLL+S+RE+ RL+ A R+GMT+VP+++YFN +G+
Sbjct: 61 LWLINGYIAPYLQAKTWGHEERRKRKLLVSRRELARLWNATAREGMTIVPIRMYFNDRGI 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK DKR TE KRDW R+K R+L++H+
Sbjct: 121 VKLKIGIAKGKKLSDKRATEAKRDWGREKQRLLKQHS 157
>gi|189182991|ref|YP_001936776.1| SsrA-binding protein [Orientia tsutsugamushi str. Ikeda]
gi|238692231|sp|B3CQP3|SSRP_ORITI RecName: Full=SsrA-binding protein
gi|189179762|dbj|BAG39542.1| small protein B homolog [Orientia tsutsugamushi str. Ikeda]
Length = 153
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 106/147 (72%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ NRKA++NY I EAGIVL G+E+KS+R KV+I DSYA ++EI+L NSYI
Sbjct: 6 KIVAQNRKAKFNYFIEDKMEAGIVLQGSELKSIRSGKVSIEDSYAAESSNEIFLYNSYIG 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY QANRFNH PRR RKLLL ++EI ++ + G TLV + IYFN+K K++L LA+
Sbjct: 66 EYKQANRFNHVPRRVRKLLLHRKEIQKIIGKLSVQGCTLVALSIYFNSKNKVKVELGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++W +Q+ RI+R
Sbjct: 126 GKKQYDKRYAIKEQEWKKQQARIMRNK 152
>gi|320547270|ref|ZP_08041562.1| SsrA-binding protein [Streptococcus equinus ATCC 9812]
gi|320448074|gb|EFW88825.1| SsrA-binding protein [Streptococcus equinus ATCC 9812]
Length = 155
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 73/148 (49%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQEPERTRKLLLKKREIENLSNELKGTGMTLVPLKVYLK-NGFAKVLLGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRET K+R+ DR R ++ N
Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153
>gi|168333924|ref|ZP_02692156.1| SsrA-binding protein [Epulopiscium sp. 'N.t. morphotype B']
Length = 155
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K+++ N+KA ++Y I ++EAG+VL GTEVKS+R +I +S+ +N E ++
Sbjct: 3 KTGAYKLIAQNKKAYHDYFIDETYEAGMVLVGTEVKSIRCGSGSIKESFIRIQNGEAFVF 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + N FN P R RKLLL K++I +L A+ GMT+VP+K+Y L K++
Sbjct: 63 NMHINPYEKGNIFNKEPLRTRKLLLHKKQITKLLGAISTKGMTIVPLKVYIKDS-LVKME 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK +DKR+ K+D RQ R + N
Sbjct: 122 IGLARGKKLHDKRQDIAKKDVRRQNERDFKIKN 154
>gi|237786015|ref|YP_002906720.1| SsrA-binding protein [Corynebacterium kroppenstedtii DSM 44385]
gi|259511417|sp|C4LK22|SSRP_CORK4 RecName: Full=SsrA-binding protein
gi|237758927|gb|ACR18177.1| tmRNA-binding protein [Corynebacterium kroppenstedtii DSM 44385]
Length = 183
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 106/158 (67%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
S S+ N K+ VV+ NR+AR++Y I+ ++EAGI L GTEVKSLR K ++ DS+AT ++
Sbjct: 21 SKVSKKNANKRLVVATNRRARHDYTILDTWEAGIQLVGTEVKSLREGKASLIDSFATIDD 80
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL + +IPEY + + NH PRR RKLLL + EI + VR TL+P+ +YF+
Sbjct: 81 GEVWLRHLHIPEYSKGHWTNHSPRRTRKLLLHRNEIDSIMGKVRDGNNTLIPLSLYFSD- 139
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LAL +GK++YD+R+ K+R +R+ R L
Sbjct: 140 GKLKVELALGRGKQDYDRRQDIKRRTEEREATRALGRR 177
>gi|294790680|ref|ZP_06755838.1| SsrA-binding protein [Scardovia inopinata F0304]
gi|294458577|gb|EFG26930.1| SsrA-binding protein [Scardovia inopinata F0304]
Length = 160
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + +++ NR+AR++Y I S EAG+VL GTEVKSLR + ++S ++ + +
Sbjct: 1 MTKNPGQDE-IHMIATNRRARHDYTIENSLEAGLVLQGTEVKSLREGRASLSQAFVSIDP 59
Query: 61 DE-IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+WL + IPEYL NH P+R RKLLL +I RL + G T++P+ +YF
Sbjct: 60 HHQVWLEGANIPEYLNGTWMNHAPKRKRKLLLHADQIARLERGIEAKGYTIIPLTLYFKQ 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK+++ALA+GK+ YDKR+ +K DR+ R +R HN
Sbjct: 120 -GRAKVEIALARGKREYDKRQALRKAQDDREALRQMRLHN 158
>gi|220905060|ref|YP_002480372.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
gi|219869359|gb|ACL49694.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 151
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P ++ N+KAR+ Y + EAG+VLTG EVKS+R KVN DSY F E
Sbjct: 1 MSQKTSPS--TIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL + +I Y A P R RKLLL +REI +L V + G+T+VP+++Y +G
Sbjct: 59 AWLLSLHIAPYSNAGYAPQEPERARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLK-RGK 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
K+++A+ +GKK +D RE+ K+R +R R L
Sbjct: 118 IKVEIAVGRGKKLHDHRESLKRRAEERDLAREL 150
>gi|209695899|ref|YP_002263829.1| SsrA-binding protein [Aliivibrio salmonicida LFI1238]
gi|226706518|sp|B6EKA9|SSRP_ALISL RecName: Full=SsrA-binding protein
gi|208009852|emb|CAQ80163.1| SsrA (tmRNA)-binding protein (small protein B) [Aliivibrio
salmonicida LFI1238]
Length = 161
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N++AR+ Y I EAG+ L G EVKSLR KVNI++SY
Sbjct: 1 MAKKKSKDKAGSNTIAMNKQARHEYFIEDEIEAGVELQGWEVKSLRSGKVNIAESYVYVR 60
Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ EI+++ I + P R RKLL+S++EI L V R+GMTLV +Y+
Sbjct: 61 DGEIFISGMNITPLQAASTHVVANPTRVRKLLMSRKEIDNLIGRVNREGMTLVATTMYW- 119
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ AKI + +A+GKK +DKR K++DW+R K RI++
Sbjct: 120 VRSWAKIKVGVAKGKKLHDKRTDSKEKDWNRDKARIMK 157
>gi|299536244|ref|ZP_07049557.1| SsrA-binding protein [Lysinibacillus fusiformis ZC1]
gi|298728230|gb|EFI68792.1| SsrA-binding protein [Lysinibacillus fusiformis ZC1]
Length = 155
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 67/152 (44%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I + EAG+VLTGTE+KS+R KV + DS+ N E W+ N
Sbjct: 3 KGSGKVLAQNKKAGHDYFIEETIEAGMVLTGTEIKSIRAGKVQLKDSFVRVRNGEAWINN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
++ + Q NRFNH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ +
Sbjct: 63 MHVSAFEQGNRFNHDPLRTRKLLLHKKQIGELVGAVKRDGYTIVPLKMYIKD-GYAKLLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ +GKK+YDKR +K++ R+ R + N
Sbjct: 122 GIGKGKKDYDKRSDMRKKEAKREMERAFKAKN 153
>gi|212703532|ref|ZP_03311660.1| hypothetical protein DESPIG_01577 [Desulfovibrio piger ATCC 29098]
gi|212673032|gb|EEB33515.1| hypothetical protein DESPIG_01577 [Desulfovibrio piger ATCC 29098]
Length = 151
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 5/155 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K P ++ N+KAR+ Y + EAGI LTG EVKS+R K+N DSY F +
Sbjct: 1 MSKK----PSPSTIAVNKKARHLYELSDFVEAGISLTGPEVKSIRAGKINFLDSYVDFRD 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E ++ + +I Y A P R R+LLL EI ++ A V + G+T+VP+++YF
Sbjct: 57 GEAFVLSLHIAPYDNAGYVPQDPDRPRRLLLHAAEIRQMAARVEQKGLTVVPVRMYFKQ- 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G K+++AL +GKK +D RET K+R +R R L
Sbjct: 116 GKVKMEIALGRGKKLFDHRETLKRRAEERDAARDL 150
>gi|221134852|ref|ZP_03561155.1| SsrA-binding protein [Glaciecola sp. HTCC2999]
Length = 158
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K NP ++ N+KA++ +H+ FEAG+ L G EVKS+R KVN+SDSY +N
Sbjct: 1 MSKKKSKNPTG-TIALNKKAKHEFHLTDKFEAGMELQGWEVKSIRAGKVNLSDSYVFVKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++TN I Q + P R RKLLL +REI +L + R G+T+V +Y+ A
Sbjct: 60 GEAFVTNITIQPLSQASTHVICDPDRTRKLLLKRREIEQLMGGLDRQGLTIVATAMYWKA 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
K+++ LA+GK+ +DKR+T K RDW RQK R+++
Sbjct: 120 -CWVKLEICLAKGKQAHDKRDTIKDRDWARQKERMMK 155
>gi|148984719|ref|ZP_01817987.1| SsrA-binding protein [Streptococcus pneumoniae SP3-BS71]
gi|225856634|ref|YP_002738145.1| SsrA-binding protein [Streptococcus pneumoniae P1031]
gi|254778385|sp|C1CK57|SSRP_STRZP RecName: Full=SsrA-binding protein
gi|147923110|gb|EDK74225.1| SsrA-binding protein [Streptococcus pneumoniae SP3-BS71]
gi|225724684|gb|ACO20536.1| SsrA-binding protein [Streptococcus pneumoniae P1031]
gi|301799951|emb|CBW32534.1| SsrA-binding protein [Streptococcus pneumoniae OXC141]
Length = 155
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL KR+I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKRQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|139474266|ref|YP_001128982.1| SsrA-binding protein [Streptococcus pyogenes str. Manfredo]
gi|166223464|sp|A2RFZ7|SSRP_STRPG RecName: Full=SsrA-binding protein
gi|134272513|emb|CAM30776.1| SsrA-binding protein [Streptococcus pyogenes str. Manfredo]
Length = 155
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRATRIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K +YDKRET K+RD +R + ++ +N
Sbjct: 127 KHDYDKRETIKRRDQERDIKKQMKHYN 153
>gi|254489763|ref|ZP_05102958.1| SsrA-binding protein [Methylophaga thiooxidans DMS010]
gi|224464848|gb|EEF81102.1| SsrA-binding protein [Methylophaga thiooxydans DMS010]
Length = 161
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRK R+++ I FEAG+VL G EVKSLR +V +++SY N E WL N+ I
Sbjct: 16 TIAVNRKVRHDFFIEERFEAGLVLEGWEVKSLRDGRVQLNESYVHVRNGEAWLANALITA 75
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P+R+RKLLL ++E+ +L AV R G TLVP+ +Y+ KG AKI +ALA+
Sbjct: 76 LKTASTHIKPEPQRDRKLLLHRKELGKLIGAVDRKGYTLVPLNMYWK-KGKAKIQIALAK 134
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK+ +DKR TEK+RDW+R K RI++
Sbjct: 135 GKQLHDKRATEKERDWNRDKARIMKIR 161
>gi|71083750|ref|YP_266470.1| SsrA-binding protein [Candidatus Pelagibacter ubique HTCC1062]
gi|91763214|ref|ZP_01265178.1| smpB protein [Candidatus Pelagibacter ubique HTCC1002]
gi|123646464|sp|Q4FLS2|SSRP_PELUB RecName: Full=SsrA-binding protein
gi|71062863|gb|AAZ21866.1| smpB protein [Candidatus Pelagibacter ubique HTCC1062]
gi|91717627|gb|EAS84278.1| smpB protein [Candidatus Pelagibacter ubique HTCC1002]
Length = 156
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + NP K++ NRKA +N+ EAGIVL G+E+KS+R KVNI+DSYA ++ E
Sbjct: 1 MNKKANPGLKIICLNRKASFNFFFEDLIEAGIVLKGSEIKSIRDGKVNIADSYAVEKDGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I L NS+I + QA+ NH P RKLLL+K+EI++L ++RDG TLVP K+YF KG
Sbjct: 61 IVLINSHIAAFKQASYSNHNPTDERKLLLNKKEINKLIGKMQRDGFTLVPTKMYFK-KGK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI++A+A+GKK +DKR T+K RDW+R+K R +R+ +
Sbjct: 120 AKIEIAVAKGKKQFDKRATKKNRDWNREKARHIRKSS 156
>gi|237666816|ref|ZP_04526801.1| SsrA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
gi|237658015|gb|EEP55570.1| SsrA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262]
Length = 156
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ +++NRKAR++Y + + EAG+VL GTEVKS+R +VN+ D YA N EI++
Sbjct: 3 RKKNQNSLAENRKARHDYFVEEAMEAGLVLVGTEVKSIRKGRVNLKDCYADIYNGEIYIK 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y Q N FN P R RKLLL K EI RL V RDG TL+P+ +Y G K+
Sbjct: 63 NMHISPYEQGNIFNVDPLRERKLLLHKDEIRRLDGLVSRDGYTLIPLSLYLKE-GKVKVA 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L + +GKKNYDKR+ ++ R R ++E +
Sbjct: 122 LGVCKGKKNYDKRDAMIEKAQKRDIDRAMKERS 154
>gi|291280255|ref|YP_003497090.1| ssrA RNA (tmRNA)-binding protein [Deferribacter desulfuricans SSM1]
gi|290754957|dbj|BAI81334.1| ssrA RNA (tmRNA)-binding protein [Deferribacter desulfuricans SSM1]
Length = 151
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I+ +EAGIVL GTEVKS + ++N+ DS+ N E +L N +I
Sbjct: 2 KVLATNKKAYHDYEILEKYEAGIVLKGTEVKSAKNGRINLRDSFIRISNGEAFLLNCHIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N NH P R RKLLL KREI RL V+ G+TLVP+++Y L K+++ALA+
Sbjct: 62 PYEQGNIMNHDPTRTRKLLLHKREIERLAGKVQEKGLTLVPLRVYLK-NNLVKVEVALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRE KK+D DR+ R L+
Sbjct: 121 GKKLHDKREAIKKKDLDREISRTLKNK 147
>gi|94993824|ref|YP_601922.1| SsrA-binding protein [Streptococcus pyogenes MGAS10750]
gi|166223463|sp|Q1J7Y3|SSRP_STRPF RecName: Full=SsrA-binding protein
gi|94547332|gb|ABF37378.1| SsrA-binding protein [Streptococcus pyogenes MGAS10750]
Length = 155
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K +YDKRET K+RD +R + ++ +N
Sbjct: 127 KHDYDKRETIKRRDQERDIKKQMKHYN 153
>gi|149919583|ref|ZP_01908062.1| SsrA-binding protein [Plesiocystis pacifica SIR-1]
gi|149819526|gb|EDM78954.1| SsrA-binding protein [Plesiocystis pacifica SIR-1]
Length = 159
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 62/149 (41%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+V+ +NRKA ++Y I+ E+G+ L G+EVKS+R ++++ ++Y F DE++L ++
Sbjct: 11 GDEVLEENRKATHDYEILEELESGVALQGSEVKSIRDGRISLKEAYCQFRGDELFLLQAH 70
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I E+ QA+ NH P R RKLLL +RE+ +L+ AV+ G+T+VP+ +Y ++ KI + L
Sbjct: 71 IAEFPQAHARNHPPLRARKLLLHRRELDKLHDAVKTQGLTIVPLVVYLKSR-RIKILIGL 129
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR K+RD R+ R LREH
Sbjct: 130 GRGKKVHDKRAAIKERDQKREMQRALREH 158
>gi|15674609|ref|NP_268783.1| SsrA-binding protein [Streptococcus pyogenes M1 GAS]
gi|50913788|ref|YP_059760.1| SsrA-binding protein [Streptococcus pyogenes MGAS10394]
gi|56808171|ref|ZP_00365952.1| COG0691: tmRNA-binding protein [Streptococcus pyogenes M49 591]
gi|71903069|ref|YP_279872.1| SsrA-binding protein [Streptococcus pyogenes MGAS6180]
gi|71910228|ref|YP_281778.1| SsrA-binding protein [Streptococcus pyogenes MGAS5005]
gi|94989925|ref|YP_598025.1| SsrA-binding protein [Streptococcus pyogenes MGAS10270]
gi|209558979|ref|YP_002285451.1| SsrA-binding protein [Streptococcus pyogenes NZ131]
gi|22096175|sp|Q9A126|SSRP_STRP1 RecName: Full=SsrA-binding protein
gi|61216439|sp|Q5XDD6|SSRP_STRP6 RecName: Full=SsrA-binding protein
gi|123640339|sp|Q48UT9|SSRP_STRPM RecName: Full=SsrA-binding protein
gi|166223462|sp|Q1JI42|SSRP_STRPD RecName: Full=SsrA-binding protein
gi|226706535|sp|B5XK94|SSRP_STRPZ RecName: Full=SsrA-binding protein
gi|13621720|gb|AAK33504.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|50902862|gb|AAT86577.1| SsrA-binding protein [Streptococcus pyogenes MGAS10394]
gi|71802164|gb|AAX71517.1| ssrA-binding protein [Streptococcus pyogenes MGAS6180]
gi|71853010|gb|AAZ51033.1| ssrA-binding protein [Streptococcus pyogenes MGAS5005]
gi|94543433|gb|ABF33481.1| SsrA-binding protein [Streptococcus pyogenes MGAS10270]
gi|209540180|gb|ACI60756.1| SsrA-binding protein [Streptococcus pyogenes NZ131]
Length = 155
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGSGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K YDKRET K+RD +R + ++ +N
Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153
>gi|241668718|ref|ZP_04756296.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254877250|ref|ZP_05249960.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254843271|gb|EET21685.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 157
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ ++ N++A ++Y I+ FEAGIVL G EVKS+R KV + DS+ + E W
Sbjct: 2 SKHKVSPATIARNKRAFHDYTILEKFEAGIVLQGWEVKSIRAGKVQMIDSHVHIKRGEAW 61
Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N P + NRKLLL++REI ++ + + G T VP+ +Y+
Sbjct: 62 LFNCLITPLLSASTHVVADASANRKLLLNRREIDKIMGRIEQKGFTCVPLAMYWKGP-RV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALAQGKK +DKR+ +K +DW R+K RI ++
Sbjct: 121 KVEIALAQGKKVHDKRQVQKDKDWAREKDRIFKK 154
>gi|242373019|ref|ZP_04818593.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W1]
gi|242349173|gb|EES40774.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W1]
Length = 156
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA +
Sbjct: 1 MAKKKSKSPG--TLAENRKARHDYNIEDTIEAGIALRGTEIKSIRRGSANLKDSYAQVKR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + NRFNH P R+RKLLL KREI +L R G +L+P+K+Y
Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREILKLGERTREIGYSLIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKK +DKR+ K++ R R +++
Sbjct: 118 GQCKVLLGVARGKKLHDKRQALKEKAMKRDIDRAVKDR 155
>gi|260904326|ref|ZP_05912648.1| SsrA-binding protein [Brevibacterium linens BL2]
Length = 156
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KKV++ NRKAR++Y I ++EAG+VL+GTEVKSLR + +++D +A +E WL
Sbjct: 3 KETGKKVIARNRKARHDYLIEDTWEAGLVLSGTEVKSLREGRASLTDGFALIFQNEAWLE 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
YIPEY Q NH RR RKLLL + EI RL V+ G TL+P+++YF+ K++
Sbjct: 63 GVYIPEYAQGTWTNHTARRRRKLLLHRDEILRLSQKVKESGRTLIPLELYFDGS-RVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ALA+GK+ +DKR+ ++ R+ R ++
Sbjct: 122 IALAKGKREWDKRQALREAQDKREAERAIKSK 153
>gi|21909889|ref|NP_664157.1| SsrA-binding protein [Streptococcus pyogenes MGAS315]
gi|28896412|ref|NP_802762.1| SsrA-binding protein [Streptococcus pyogenes SSI-1]
gi|25009278|sp|Q8K8C6|SSRP_STRP3 RecName: Full=SsrA-binding protein
gi|21904076|gb|AAM78960.1| putative tmRNA-binding protein [Streptococcus pyogenes MGAS315]
gi|28811663|dbj|BAC64595.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 155
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLENELKGSGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K YDKRET K+RD +R + ++ +N
Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153
>gi|37521063|ref|NP_924440.1| SsrA-binding protein [Gloeobacter violaceus PCC 7421]
gi|39932270|sp|Q7NKI3|SSRP_GLOVI RecName: Full=SsrA-binding protein
gi|35212059|dbj|BAC89435.1| tmRNA-binding protein [Gloeobacter violaceus PCC 7421]
Length = 152
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G +K++ DNRKAR+ Y I+ ++ AG+ L GTEVK++R + N++D++A + E+ L
Sbjct: 3 GEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVLLY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N I A F H P R RKLLL +REIH+L V G+TL+P+K+Y K+D
Sbjct: 63 NMNISPLQTAGAFAHDPLRTRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGS-WVKLD 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L LA+GKK YDKRE KKR+ R R +R
Sbjct: 122 LGLARGKKLYDKREDIKKRETKRDIERAMRR 152
>gi|113971111|ref|YP_734904.1| SsrA-binding protein [Shewanella sp. MR-4]
gi|117921392|ref|YP_870584.1| SsrA-binding protein [Shewanella sp. ANA-3]
gi|123324816|sp|Q0HGH0|SSRP_SHESM RecName: Full=SsrA-binding protein
gi|166223455|sp|A0KZF9|SSRP_SHESA RecName: Full=SsrA-binding protein
gi|113885795|gb|ABI39847.1| SsrA-binding protein [Shewanella sp. MR-4]
gi|117613724|gb|ABK49178.1| SsrA-binding protein [Shewanella sp. ANA-3]
Length = 163
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K+ ++ N++A + Y EAGI L G EVKS+R+ KVN+SD Y +N
Sbjct: 1 MVKKNSKKAAPATIARNKRATFEYRFEEKMEAGISLMGWEVKSIRMGKVNLSDCYVFLKN 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+
Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPIRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K R+W+ +K R++++
Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158
>gi|114562272|ref|YP_749785.1| SsrA-binding protein [Shewanella frigidimarina NCIMB 400]
gi|122300438|sp|Q085W8|SSRP_SHEFN RecName: Full=SsrA-binding protein
gi|114333565|gb|ABI70947.1| SsrA-binding protein [Shewanella frigidimarina NCIMB 400]
Length = 162
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + ++ N++A + Y I EAG+ L G EVKS+R+ KVN+SD Y + E
Sbjct: 3 KKKSANASASIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYIKEGEA 62
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++ I + P R +KLLL + EI +L + R G TLVP+ +Y+
Sbjct: 63 FMHGCTIQPLNTASTHVICDPIRTKKLLLKRSEIDKLAGLIERQGYTLVPLSMYWRKGAW 122
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K+R+W +K R++++
Sbjct: 123 VKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKK 157
>gi|30248447|ref|NP_840517.1| SsrA-binding protein [Nitrosomonas europaea ATCC 19718]
gi|39932361|sp|Q82X65|SSRP_NITEU RecName: Full=SsrA-binding protein
gi|30138333|emb|CAD84341.1| SmpB protein [Nitrosomonas europaea ATCC 19718]
Length = 151
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA ++Y I +EAGIVL G EVK++R + + ++Y E++L S+I
Sbjct: 3 IVQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRAGRAQLKEAYILIRKGELFLIGSHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P + RKLLL +I L V R G TL+P+ +++ + G K+++ LA+G
Sbjct: 63 ATASTHVNPDPVKTRKLLLHASQIRELIGKVERAGYTLIPLDMHYKS-GRIKLEIGLARG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRETEK+++W+R K R+LR
Sbjct: 122 KKQYDKRETEKRKEWERDKQRLLRIR 147
>gi|284040495|ref|YP_003390425.1| SsrA-binding protein [Spirosoma linguale DSM 74]
gi|283819788|gb|ADB41626.1| SsrA-binding protein [Spirosoma linguale DSM 74]
Length = 153
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 100/144 (69%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K+V NR+A + Y + ++ AGIVLTGTE+KS+R KVN+ D+Y DE+++ I
Sbjct: 8 KQVDIRNRRASFEYSFLETYTAGIVLTGTEIKSVRQGKVNLQDAYCLIHGDELFIRQMSI 67
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + +NH P R+RKLLL+KREI RL ++ G+T+VP++++ + +G AK+++ALA
Sbjct: 68 SIYTEGTHYNHEPLRDRKLLLTKREIRRLTEKLKDQGLTIVPIRMFTSERGFAKVEIALA 127
Query: 131 QGKKNYDKRETEKKRDWDRQKHRI 154
+GKK YDKR++ K+RD +R+ R
Sbjct: 128 KGKKLYDKRDSIKERDVEREMQRE 151
>gi|194333541|ref|YP_002015401.1| SsrA-binding protein [Prosthecochloris aestuarii DSM 271]
gi|194311359|gb|ACF45754.1| SsrA-binding protein [Prosthecochloris aestuarii DSM 271]
Length = 157
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + P NRKAR+ + I+ + AGI L G+EVKS+R+ + ++++SYA
Sbjct: 1 MA-KQQQKPQYVSTILNRKARHEFTILETVVAGIELQGSEVKSIRLGRASLNESYAIIHR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N I Y P+R+RKLLL K EI ++ + + G+TL+P+K +FN++
Sbjct: 60 GEVWLENMQITPYEHNTLELPDPKRSRKLLLQKSEIIKIQSKLHEKGLTLIPLKAFFNSR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ KI+L +A+GKK +DKRE+ K RD +RQ R+ ++
Sbjct: 120 GMLKIELGIAKGKKLFDKRESIKNRDAERQLQRLKHQY 157
>gi|88704214|ref|ZP_01101928.1| SsrA-binding protein [Congregibacter litoralis KT71]
gi|88701265|gb|EAQ98370.1| SsrA-binding protein [Congregibacter litoralis KT71]
Length = 163
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 100/160 (62%), Gaps = 4/160 (2%)
Query: 1 MSL--KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + N + N++AR++YH++ SFEAG+ LTG EVK+LR K ++DSY
Sbjct: 1 MAAMGKKKSNTADTTIVQNKRARFDYHLLESFEAGVALTGWEVKALRAGKAQLTDSYVMM 60
Query: 59 ENDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
++ E +L S I + + P R RKLLL++RE+ R+ AAV G T V K+Y+
Sbjct: 61 KDGEAFLLGSQITPLATASTHYVTDPTRTRKLLLNRRELARILAAVSAKGQTCVCTKLYW 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K +ALA GK+++DKR+T+K+R+W QK RI+R+
Sbjct: 121 KGH-LVKAAIALAHGKQSHDKRQTQKEREWGVQKQRIMRD 159
>gi|162147664|ref|YP_001602125.1| SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5]
gi|187611479|sp|A9HIW5|SSRP_GLUDA RecName: Full=SsrA-binding protein
gi|161786241|emb|CAP55823.1| putative SsrA-binding protein [Gluconacetobacter diazotrophicus PAl
5]
Length = 154
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 98/146 (67%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ + NRK R+NY I+ + EAG+VL G EVKSLR+ + I+++YA + EIWL NSYIPE
Sbjct: 6 IAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFNSYIPE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y R RKLLL ++++ +L AV RDG+TLVP+ I+FNA+G+AK+ L + +G
Sbjct: 66 YQGGVLSRFETRAPRKLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTLGIGEG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
+K DKR+ RDW R K R+LR
Sbjct: 126 RKKADKRQAIADRDWQRDKARLLRNK 151
>gi|187631663|sp|Q12PV1|SSRP_SHEDO RecName: Full=SsrA-binding protein
Length = 165
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M K ++ N++A + Y I EAG+ L G EVKS+R+ KVN+SD Y
Sbjct: 1 MVKKNSKSAKNASATIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYI 60
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E ++ I + P R +KLLL + EI +L + R G TL+P+ +Y+
Sbjct: 61 KEGEAFMHGCTIQPLNTASTHVVCDPIRTKKLLLKRSEIDKLAGLIERQGYTLIPLSMYW 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K+R+W +K R++++
Sbjct: 121 RKGAWVKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKK 160
>gi|225026079|ref|ZP_03715271.1| hypothetical protein EUBHAL_00320 [Eubacterium hallii DSM 3353]
gi|224956596|gb|EEG37805.1| hypothetical protein EUBHAL_00320 [Eubacterium hallii DSM 3353]
Length = 171
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA ++Y I +EAGI L GTEVKSLR+ + +I +S+ T N
Sbjct: 15 MAK----SEGIKLIANNKKAYHDYFIDEKYEAGIALHGTEVKSLRMGRCSIKESFVTISN 70
Query: 61 DEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
L N +I Y + N FN P R RKLLL K EI++L ++ G TL+P+K+YF
Sbjct: 71 KGEILINHMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLAGQIKMKGYTLMPLKVYFKG 130
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 131 S-LVKVEIGLARGKKLYDKRQDIAKKDAKREVERDFKIRN 169
>gi|24373047|ref|NP_717089.1| SsrA-binding protein [Shewanella oneidensis MR-1]
gi|114048345|ref|YP_738895.1| SsrA-binding protein [Shewanella sp. MR-7]
gi|30173292|sp|Q8EGW8|SSRP_SHEON RecName: Full=SsrA-binding protein
gi|123030424|sp|Q0HSR7|SSRP_SHESR RecName: Full=SsrA-binding protein
gi|24347220|gb|AAN54534.1|AE015592_7 SsrA-binding protein [Shewanella oneidensis MR-1]
gi|113889787|gb|ABI43838.1| SsrA-binding protein [Shewanella sp. MR-7]
Length = 163
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K+ ++ N++A + Y EAG+ L G EVKS+R+ KVN+SD Y +N
Sbjct: 1 MVKKNSKKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+
Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPIRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K R+W+ +K R++++
Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158
>gi|255067641|ref|ZP_05319496.1| SsrA-binding protein [Neisseria sicca ATCC 29256]
gi|255048115|gb|EET43579.1| SsrA-binding protein [Neisseria sicca ATCC 29256]
Length = 148
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R +V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDQLEAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI++L R G T+VP+ ++F +G K+++ LA+G
Sbjct: 63 PTASTHVKPDPVRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHFT-RGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146
>gi|229495301|ref|ZP_04389036.1| SsrA-binding protein [Porphyromonas endodontalis ATCC 35406]
gi|229317744|gb|EEN83642.1| SsrA-binding protein [Porphyromonas endodontalis ATCC 35406]
Length = 156
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++V NR+A ++Y I+ + AGIVL G+E+KS+R+ K ++DSY F N
Sbjct: 1 MA-NKKLQLDRRVNIKNRRATFDYEILDRYTAGIVLVGSEIKSIRLGKAGLADSYCFFAN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N YI EY A NH RR+RKLLLS++E+ +L ++V+ G+T+VP+ ++ N +
Sbjct: 60 GELWLKNMYIAEYFYATYNNHQERRDRKLLLSRKELAKLESSVKTPGVTIVPLSVFINDR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+ + +A+GKK YDKR + K+R+ R RI++
Sbjct: 120 GYAKVVIGVARGKKLYDKRASIKEREDKRTLARIMKH 156
>gi|157803812|ref|YP_001492361.1| SsrA-binding protein [Rickettsia canadensis str. McKiel]
gi|166223445|sp|A8EYZ3|SSRP_RICCK RecName: Full=SsrA-binding protein
gi|157785075|gb|ABV73576.1| SsrA-binding protein [Rickettsia canadensis str. McKiel]
Length = 152
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +SYA E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESYAGDTGHELFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +AN+FNH RR RKLLL +E+ ++ ++ G TLV + +YFN K K++L LA
Sbjct: 65 AEYEKANKFNHATRRPRKLLLHTKEMKKIIGKIKIKGYTLVALSMYFNKKNKVKVELGLA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLYDKRESIKEKDWQRDQSRLIRQK 152
>gi|311106009|ref|YP_003978862.1| SsrA-binding protein [Achromobacter xylosoxidans A8]
gi|310760698|gb|ADP16147.1| SsrA-binding protein [Achromobacter xylosoxidans A8]
Length = 157
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + E++L ++
Sbjct: 3 IIDNRKATHDYFIEDRYEAGLVLQGWEVKAIRDGRVQLKESYVIVRDGELYLLGMHVSPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G
Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+T +++DW R+K RI++
Sbjct: 122 KKMFDKRDTAREKDWQREKERIMKH 146
>gi|298244948|ref|ZP_06968754.1| SsrA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297552429|gb|EFH86294.1| SsrA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 164
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 8/165 (4%)
Query: 1 MSLKSRGN-------PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53
M+ S KVVS NR+A ++Y + + EAGI L GTE+KS+R KVN+
Sbjct: 1 MAKASTTKQKEEAQQENSKVVSVNRQAYHDYTVESTIEAGISLVGTEIKSIRDGKVNLRG 60
Query: 54 SYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPM 113
SYA N E WL N++I Y NR+NH P R RKLLL KREI +L V G+TLVP+
Sbjct: 61 SYAIIRNGEAWLENAHIAVYEHGNRYNHEPLRKRKLLLHKREIEQLGQRVAAKGLTLVPL 120
Query: 114 KIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+Y +G AK++L L +GKK +DKR++ +RD R RI+R
Sbjct: 121 KLYMK-RGRAKLELGLCKGKKLFDKRQSIAERDVRRDIERIVRGR 164
>gi|153813800|ref|ZP_01966468.1| hypothetical protein RUMTOR_00006 [Ruminococcus torques ATCC 27756]
gi|145848196|gb|EDK25114.1| hypothetical protein RUMTOR_00006 [Ruminococcus torques ATCC 27756]
Length = 165
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+++++N+KA ++Y I+ +EAGIVL GTEVKSLR+ K +I +++ E+ E+++
Sbjct: 14 KSEVRMIANNKKAYHDYFILEKYEAGIVLHGTEVKSLRMGKCSIKEAFIRVESGEMYIYG 73
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K+EI +++ ++ G+TLVP+++YF L K+++
Sbjct: 74 MHISPYEKGNIFNKDPLRVRKLLLHKKEIDKMFGKMKEQGITLVPLQVYFKGS-LVKMEI 132
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+A+GKK YDKR+ K+D R+ R + N
Sbjct: 133 GVAKGKKLYDKRDDIAKKDQKREAQREFKIRN 164
>gi|327490244|gb|EGF22032.1| SsrA-binding protein [Streptococcus sanguinis SK1058]
Length = 155
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQIKNGEAWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKR++ K+R+ +R R ++ N
Sbjct: 126 GKHDYDKRDSIKRREQNRDIARQMKNFN 153
>gi|46190858|ref|ZP_00121019.2| COG0691: tmRNA-binding protein [Bifidobacterium longum DJO10A]
gi|189439801|ref|YP_001954882.1| SsrA-binding protein [Bifidobacterium longum DJO10A]
gi|213692882|ref|YP_002323468.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|239622361|ref|ZP_04665392.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|296453670|ref|YP_003660813.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JDM301]
gi|312133207|ref|YP_004000546.1| smpb [Bifidobacterium longum subsp. longum BBMN68]
gi|317482553|ref|ZP_07941568.1| SsrA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
gi|322688637|ref|YP_004208371.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis 157F]
gi|322690623|ref|YP_004220193.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|30173313|sp|Q8G540|SSRP_BIFLO RecName: Full=SsrA-binding protein
gi|238692074|sp|B3DTB5|SSRP_BIFLD RecName: Full=SsrA-binding protein
gi|254778346|sp|B7GUE4|SSRP_BIFLI RecName: Full=SsrA-binding protein
gi|189428236|gb|ACD98384.1| tmRNA-binding protein [Bifidobacterium longum DJO10A]
gi|213524343|gb|ACJ53090.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|239514358|gb|EEQ54225.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis CCUG
52486]
gi|291517270|emb|CBK70886.1| SsrA-binding protein [Bifidobacterium longum subsp. longum F8]
gi|296183101|gb|ADG99982.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JDM301]
gi|311772408|gb|ADQ01896.1| SmpB [Bifidobacterium longum subsp. longum BBMN68]
gi|316915975|gb|EFV37382.1| SsrA-binding protein [Bifidobacterium sp. 12_1_47BFAA]
gi|320455479|dbj|BAJ66101.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JCM
1217]
gi|320459056|dbj|BAJ69677.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|320459973|dbj|BAJ70593.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis 157F]
Length = 158
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65
+K++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL
Sbjct: 3 KETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K
Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 122 EIALARGKKEFDKRQALREEQDKREALRAMRYAN 155
>gi|224282584|ref|ZP_03645906.1| SsrA-binding protein [Bifidobacterium bifidum NCIMB 41171]
gi|310287044|ref|YP_003938302.1| SsrA-binding protein [Bifidobacterium bifidum S17]
gi|311063916|ref|YP_003970641.1| SmpB SsrA-binding protein [Bifidobacterium bifidum PRL2010]
gi|313139742|ref|ZP_07801935.1| SsrA-binding protein [Bifidobacterium bifidum NCIMB 41171]
gi|309250980|gb|ADO52728.1| SsrA-binding protein [Bifidobacterium bifidum S17]
gi|310866235|gb|ADP35604.1| SmpB SsrA-binding protein [Bifidobacterium bifidum PRL2010]
gi|313132252|gb|EFR49869.1| SsrA-binding protein [Bifidobacterium bifidum NCIMB 41171]
Length = 159
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ +++ NRKAR++Y I +EAG+VLTGTEVKSLR + ++++++
Sbjct: 1 MAK----EQGTVLIAQNRKARHDYLIEDKYEAGLVLTGTEVKSLREGRASLAEAFVSIDR 56
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL + IPEYL NH P+R RKLLL ++I +L + G T+VP+ +YF
Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAQQIVKLSRQIEAKGYTIVPLSLYFKD 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G AK ++ALA+GK+ +DKR+ ++ R+ R +R N
Sbjct: 117 -GRAKAEIALARGKREFDKRQALREEQDKREALRAMRYKN 155
>gi|150020149|ref|YP_001305503.1| SsrA-binding protein [Thermosipho melanesiensis BI429]
gi|187629777|sp|A6LJL7|SSRP_THEM4 RecName: Full=SsrA-binding protein
gi|149792670|gb|ABR30118.1| SsrA-binding protein [Thermosipho melanesiensis BI429]
Length = 147
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/145 (48%), Positives = 101/145 (69%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA +Y I+ ++EAGI L GTEVKSLR S N DS+ +N E++L N IP
Sbjct: 2 KIIATNKKAFSDYIILETYEAGIELRGTEVKSLRESGANFKDSFCRIKNGEVFLLNLNIP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y + NH P R R+LLL K+EIHRL V+ G+T++P KIYFN +GL K+++A+A+
Sbjct: 62 QYRNGSLNNHDPERPRRLLLHKKEIHRLLGKVKEQGLTIIPTKIYFNNRGLVKVEIAVAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK YDKRE KKR+ +R+ L+
Sbjct: 122 GKKKYDKREDIKKREINRRIREYLK 146
>gi|251794221|ref|YP_003008952.1| SsrA-binding protein [Paenibacillus sp. JDR-2]
gi|247541847|gb|ACS98865.1| SsrA-binding protein [Paenibacillus sp. JDR-2]
Length = 160
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 3/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ N K ++ N+KA ++Y I ++EAGIVL GTE+K+LR+ K NISD++AT N E
Sbjct: 1 MGAKKNDG-KQLAQNKKASHDYFIEDTYEAGIVLMGTEIKALRMGKANISDAFATIRNGE 59
Query: 63 IWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+++ N +I + Q NR N P R RKLLL K++IH+L +++G ++VP+KIY G
Sbjct: 60 MFIHNMHISPFDQGNRHNPTDPTRARKLLLHKQQIHKLLGQSKQEGYSIVPLKIYVR-NG 118
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + L +GKK YDKR+T KRD R R LRE
Sbjct: 119 YAKLLIGLGKGKKQYDKRDTAAKRDAQRDIQRALREK 155
>gi|296135381|ref|YP_003642623.1| SsrA-binding protein [Thiomonas intermedia K12]
gi|294339488|emb|CAZ87847.1| SsrA-binding protein (Small protein B) [Thiomonas sp. 3As]
gi|295795503|gb|ADG30293.1| SsrA-binding protein [Thiomonas intermedia K12]
Length = 147
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKA +NY + FEAGIVL G EVKS+R +V ++D Y + E++L +
Sbjct: 3 IAENRKAHFNYFLEDRFEAGIVLEGWEVKSVRAGQVQLTDGYVVIRDGELFLIGMNVTAL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLL+ K EI +L V + G TLVP+ +++ G K+DLAL +G
Sbjct: 63 NSASTHVRPDASRTRKLLMHKDEIRKLIGKVEQRGYTLVPINLHYKG-GRVKLDLALGKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK++DKR+TE KRDW R+K RI++
Sbjct: 122 KKDHDKRDTEAKRDWQREKARIMKTR 147
>gi|165976288|ref|YP_001651881.1| SsrA-binding protein, small major protein B [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|165876389|gb|ABY69437.1| SsrA-binding protein, small major protein B [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
Length = 146
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 2/144 (1%)
Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ- 75
N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E +L + I
Sbjct: 2 NKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGEAFLFGATITPLNMA 61
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ P R RKLLL+KRE+ L+ V RDGMT+V + +Y+ AK+ + +A+GKK
Sbjct: 62 STHIVCDPTRTRKLLLNKRELDSLFGKVNRDGMTVVALSLYWK-NAWAKVKVGVAKGKKL 120
Query: 136 YDKRETEKKRDWDRQKHRILREHN 159
+DKRE K R+W K RI++ N
Sbjct: 121 HDKREDIKDREWQVAKQRIMKNAN 144
>gi|145220012|ref|YP_001130721.1| SsrA-binding protein [Prosthecochloris vibrioformis DSM 265]
gi|189046837|sp|A4SFG0|SSRP_PROVI RecName: Full=SsrA-binding protein
gi|145206176|gb|ABP37219.1| SsrA-binding protein [Chlorobium phaeovibrioides DSM 265]
Length = 157
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + + NRKAR+ + I+ + AGI L G+EVKS+R+ K ++++S+A +
Sbjct: 1 MAKKQQTKTYTQAI-QNRKARFEFEILDTVVAGIELLGSEVKSVRLGKASLNESFAIIHH 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N I Y + + P+R+RKLLL K EI +L + + G+ L+P+K +FN K
Sbjct: 60 GEVWLENMQITPYEFNHLDSLEPKRSRKLLLHKAEIAKLQSQISEKGLALIPLKAFFNPK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ K++LA+A+GKK +DKRET K RD +RQ +I +++
Sbjct: 120 GVLKLELAVAKGKKLFDKRETIKNRDNERQLQQIKKQY 157
>gi|253998941|ref|YP_003051004.1| SsrA-binding protein [Methylovorus sp. SIP3-4]
gi|313201044|ref|YP_004039702.1| ssra-binding protein [Methylovorus sp. MP688]
gi|253985620|gb|ACT50477.1| SsrA-binding protein [Methylovorus sp. SIP3-4]
gi|312440360|gb|ADQ84466.1| SsrA-binding protein [Methylovorus sp. MP688]
Length = 152
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I +EAGIVL G EVK++R +++ + ++Y + EI+L ++
Sbjct: 3 IAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRDNRIQLKEAYVIIQRGEIYLIGCHVTPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL EI +L V R G TLVP+ ++F +G K+ + LA+G
Sbjct: 63 GSASTHVRPDAIRTRKLLLHSEEIAKLIGKVERAGYTLVPLDLHFT-RGRIKLQIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR+TEK+RDW +++ +++ H
Sbjct: 122 KKQYDKRQTEKERDWKMEQNSLMKRH 147
>gi|225390489|ref|ZP_03760213.1| hypothetical protein CLOSTASPAR_04244 [Clostridium asparagiforme
DSM 15981]
gi|225043453|gb|EEG53699.1| hypothetical protein CLOSTASPAR_04244 [Clostridium asparagiforme
DSM 15981]
Length = 155
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K+V++N+KA ++Y I FEAGI L GTEVKS+R+ K ++ +++ + E+++
Sbjct: 2 GKESIKLVANNKKAYHDYFIDDKFEAGIELFGTEVKSIRMGKCSVKEAFVKIDKGEVFIY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R RKLLL + EI +L + + G TLVP+++YF L K++
Sbjct: 62 GMHISPYEKGNIFNKDPLRVRKLLLHRSEIMKLNGKITQKGYTLVPLQVYFKGS-LVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR K+D R+ + + N
Sbjct: 121 IGLARGKKLYDKRADLAKKDQRRELEKDFKVKN 153
>gi|225350860|ref|ZP_03741883.1| hypothetical protein BIFPSEUDO_02434 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|225158316|gb|EEG71558.1| hypothetical protein BIFPSEUDO_02434 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 159
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+
Sbjct: 1 MAK----EQGVKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDR 56
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL + IPEYL NH P+R RKLLL +I +L + G T++P+ +YF
Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAQIDKLARQSQAKGFTIIPLSLYFKD 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K ++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 117 -GRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYAN 155
>gi|91792597|ref|YP_562248.1| SsrA-binding protein [Shewanella denitrificans OS217]
gi|91714599|gb|ABE54525.1| SsrA-binding protein [Shewanella denitrificans OS217]
Length = 186
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 3/160 (1%)
Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M K ++ N++A + Y I EAG+ L G EVKS+R+ KVN+SD Y
Sbjct: 22 MVKKNSKSAKNASATIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYI 81
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E ++ I + P R +KLLL + EI +L + R G TL+P+ +Y+
Sbjct: 82 KEGEAFMHGCTIQPLNTASTHVVCDPIRTKKLLLKRSEIDKLAGLIERQGYTLIPLSMYW 141
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K+R+W +K R++++
Sbjct: 142 RKGAWVKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKK 181
>gi|91775498|ref|YP_545254.1| SsrA-binding protein [Methylobacillus flagellatus KT]
gi|122400008|sp|Q1H274|SSRP_METFK RecName: Full=SsrA-binding protein
gi|91709485|gb|ABE49413.1| SsrA-binding protein [Methylobacillus flagellatus KT]
Length = 154
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I +EAGIVL G EVK++R ++V + ++Y + EI+L ++
Sbjct: 3 IAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRENRVQLKEAYVIIQRGEIYLIGCHVTPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL +I +L V R G TLVP+ +++ +G K+ + LA+G
Sbjct: 63 GSASTHVRPDAIRTRKLLLHSEQIAKLIGKVERAGYTLVPLDMHYT-RGRIKVQIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR +EK++DW R++ +++++
Sbjct: 122 KKQYDKRHSEKEKDWKREQSSLMKKY 147
>gi|121594890|ref|YP_986786.1| SsrA-binding protein [Acidovorax sp. JS42]
gi|222110459|ref|YP_002552723.1| ssra-binding protein [Acidovorax ebreus TPSY]
gi|166222353|sp|A1W8Y5|SSRP_ACISJ RecName: Full=SsrA-binding protein
gi|254778358|sp|B9MGQ0|SSRP_DIAST RecName: Full=SsrA-binding protein
gi|120606970|gb|ABM42710.1| SsrA-binding protein [Acidovorax sp. JS42]
gi|221729903|gb|ACM32723.1| SsrA-binding protein [Acidovorax ebreus TPSY]
Length = 157
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++DN+KA YNY +EAG+VL G EVK+LR KV ++D Y ++
Sbjct: 1 MAKKPDTSSR---IADNKKAAYNYFFEERYEAGLVLHGWEVKALREGKVQLTDGYVIIKD 57
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L I + + R +KLL+ K EI RL V + G TLVP+ +++
Sbjct: 58 GELFLIGCQINPLKTASTHVSPDAARIKKLLMHKDEIRRLIGKVEQKGYTLVPLNLHWKD 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK ++ALA+GK +DKR+T K+R+ R+ R+++
Sbjct: 118 -GRAKCEIALAKGKAEHDKRDTIKEREGKREVERVMKSR 155
>gi|288905815|ref|YP_003431037.1| tmRNA-binding protein SmpB [Streptococcus gallolyticus UCN34]
gi|306831905|ref|ZP_07465060.1| SsrA-binding protein [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978850|ref|YP_004288566.1| SsrA-binding protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732541|emb|CBI14113.1| putative tmRNA-binding protein SmpB [Streptococcus gallolyticus
UCN34]
gi|304425831|gb|EFM28948.1| SsrA-binding protein [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178778|emb|CBZ48822.1| SsrA-binding protein [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 155
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQDPERTRKLLLKKREIEKLSNDLKGTGMTLVPLKVYLK-NGFAKVLLGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRET K+R+ DR R ++ N
Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153
>gi|225075512|ref|ZP_03718711.1| hypothetical protein NEIFLAOT_00525 [Neisseria flavescens
NRL30031/H210]
gi|241758494|ref|ZP_04756613.1| SsrA-binding protein [Neisseria flavescens SK114]
gi|261381143|ref|ZP_05985716.1| SsrA-binding protein [Neisseria subflava NJ9703]
gi|319637944|ref|ZP_07992710.1| SsrA-binding protein [Neisseria mucosa C102]
gi|224953147|gb|EEG34356.1| hypothetical protein NEIFLAOT_00525 [Neisseria flavescens
NRL30031/H210]
gi|241321329|gb|EER57477.1| SsrA-binding protein [Neisseria flavescens SK114]
gi|284795948|gb|EFC51295.1| SsrA-binding protein [Neisseria subflava NJ9703]
gi|317401099|gb|EFV81754.1| SsrA-binding protein [Neisseria mucosa C102]
Length = 148
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAGIVL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDQIEAGIVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI++L R G T+VP+ +++ +G K+++ LA+G
Sbjct: 63 PTASTHVKPDPVRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHYT-RGRIKVEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146
>gi|197334587|ref|YP_002156833.1| SsrA-binding protein [Vibrio fischeri MJ11]
gi|226706536|sp|B5FA19|SSRP_VIBFM RecName: Full=SsrA-binding protein
gi|197316077|gb|ACH65524.1| SsrA-binding protein [Vibrio fischeri MJ11]
Length = 161
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N++AR+ Y I EAGI L G EVKSLR KVNI++SY
Sbjct: 1 MAKKKSKDKAGSNTIAMNKQARHEYFIDDEIEAGIELQGWEVKSLRSGKVNIAESYVYVR 60
Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ EI+++ I + P R RKLL+S++EI L V R+GMTLV +Y+
Sbjct: 61 DGEIFISGMTITPLQAASTHVVANPTRIRKLLMSRKEIDNLIGRVNREGMTLVATTMYW- 119
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ AKI + +A+GKK +DKR K++DW+R K RI++
Sbjct: 120 VRSWAKIKVGVAKGKKLHDKRTDSKEKDWNRDKARIMK 157
>gi|291563701|emb|CBL42517.1| SsrA-binding protein [butyrate-producing bacterium SS3/4]
Length = 156
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ K++++N+KA +++ I FE GI L GTEVKS+R+ K +I +S+ NDE+ +
Sbjct: 3 KSSGFKLIANNKKAYFDFFIDDKFECGIALAGTEVKSMRMGKCSIKESFVRITNDEVMIY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R RKLL+ + EI++L ++ G TLVP+++YF L K++
Sbjct: 63 GMHISPYEKGNIFNKDPLRERKLLMHRYEINKLKGKIQEKGYTLVPLQVYFKGS-LVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR K+D R+ + + N
Sbjct: 122 IGLARGKKLYDKRADIAKKDQRRELEKEFKVKN 154
>gi|88856361|ref|ZP_01131020.1| SsrA-binding protein [marine actinobacterium PHSC20C1]
gi|88814445|gb|EAR24308.1| SsrA-binding protein [marine actinobacterium PHSC20C1]
Length = 159
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/153 (44%), Positives = 103/153 (67%), Gaps = 2/153 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWL 65
+KVV+ NRKAR++Y I +FEAG+VL+GTEVKSLR+ + ++ D Y ++ E WL
Sbjct: 3 KEGDRKVVASNRKARHDYSIEDTFEAGLVLSGTEVKSLRLGRASLIDGYGYIDDHAEAWL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+IPE+ Q + NH PRR RK+LL K +I +++ +++ G TLVP+ IYF G AK+
Sbjct: 63 DAVHIPEFFQGSWNNHPPRRKRKMLLHKEQILKIHNKIKQGGYTLVPLSIYFLD-GRAKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+LA+A+GK+ YDKR+T ++R R+ R +
Sbjct: 122 ELAVAKGKREYDKRQTLRERQDKRESDRAISAR 154
>gi|56708252|ref|YP_170148.1| SsrA-binding protein [Francisella tularensis subsp. tularensis SCHU
S4]
gi|89256144|ref|YP_513506.1| SsrA-binding protein [Francisella tularensis subsp. holarctica LVS]
gi|110670723|ref|YP_667280.1| SsrA-binding protein [Francisella tularensis subsp. tularensis
FSC198]
gi|115314616|ref|YP_763339.1| SsrA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134302167|ref|YP_001122136.1| SsrA-binding protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|156502171|ref|YP_001428236.1| SsrA-binding protein [Francisella tularensis subsp. holarctica
FTNF002-00]
gi|167010588|ref|ZP_02275519.1| SsrA-binding protein [Francisella tularensis subsp. holarctica
FSC200]
gi|187931556|ref|YP_001891540.1| SsrA-binding protein [Francisella tularensis subsp. mediasiatica
FSC147]
gi|224457371|ref|ZP_03665844.1| SsrA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|254367467|ref|ZP_04983493.1| ssrA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|254369147|ref|ZP_04985159.1| hypothetical protein FTAG_00083 [Francisella tularensis subsp.
holarctica FSC022]
gi|254370738|ref|ZP_04986743.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254875072|ref|ZP_05247782.1| ssrA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|290953285|ref|ZP_06557906.1| SsrA-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|295313491|ref|ZP_06804087.1| SsrA-binding protein [Francisella tularensis subsp. holarctica
URFT1]
gi|61216410|sp|Q5NFP4|SSRP_FRATT RecName: Full=SsrA-binding protein
gi|122325360|sp|Q0BMI2|SSRP_FRATO RecName: Full=SsrA-binding protein
gi|122500902|sp|Q2A446|SSRP_FRATH RecName: Full=SsrA-binding protein
gi|123169340|sp|Q14H46|SSRP_FRAT1 RecName: Full=SsrA-binding protein
gi|166223218|sp|A7NBC7|SSRP_FRATF RecName: Full=SsrA-binding protein
gi|166223220|sp|A4IYL4|SSRP_FRATW RecName: Full=SsrA-binding protein
gi|238691557|sp|B2SGA3|SSRP_FRATM RecName: Full=SsrA-binding protein
gi|56604744|emb|CAG45819.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89143975|emb|CAJ79200.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp.
holarctica LVS]
gi|110321056|emb|CAL09202.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp.
tularensis FSC198]
gi|115129515|gb|ABI82702.1| tmRNA-binding protein [Francisella tularensis subsp. holarctica
OSU18]
gi|134049944|gb|ABO47015.1| SsrA-binding protein [Francisella tularensis subsp. tularensis
WY96-3418]
gi|134253283|gb|EBA52377.1| ssrA-binding protein [Francisella tularensis subsp. holarctica 257]
gi|151568981|gb|EDN34635.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp.
tularensis FSC033]
gi|156252774|gb|ABU61280.1| SsrA (small, stable RNA) -binding protein [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|157122097|gb|EDO66237.1| hypothetical protein FTAG_00083 [Francisella tularensis subsp.
holarctica FSC022]
gi|187712465|gb|ACD30762.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254841071|gb|EET19507.1| ssrA-binding protein [Francisella tularensis subsp. tularensis
MA00-2987]
gi|282159479|gb|ADA78870.1| SsrA-binding protein [Francisella tularensis subsp. tularensis
NE061598]
Length = 157
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ ++ E W
Sbjct: 2 SKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKHGEAW 61
Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N P + RKLLL++REI+++ + + G T +P+ +Y+
Sbjct: 62 LFNCLITPLLSASTHVVADAAATRKLLLNRREINKIMGRIEQKGFTCIPLSMYWKGP-RV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALAQGKK +DKR+ +K +DW R+K R+ ++
Sbjct: 121 KVEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 154
>gi|301794113|emb|CBW36519.1| SsrA-binding protein [Streptococcus pneumoniae INV104]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++NI D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINIKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|281422454|ref|ZP_06253453.1| SsrA-binding protein [Prevotella copri DSM 18205]
gi|281403517|gb|EFB34197.1| SsrA-binding protein [Prevotella copri DSM 18205]
Length = 159
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + + K + N+KA + Y V ++ AGIVLTGTE+KS+R K ++ D Y F
Sbjct: 1 MNKQEQELRKKSPIQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRGGKASLVDCYCDFY 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH RR+RKLLL+KRE+ RL ++ G T+VP I+ +
Sbjct: 61 QGELWVKGMNISPYFYGSFSNHEARRDRKLLLTKRELRRLEEDSKQPGFTIVPTLIFIDN 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+AL +GKK YDKR+T K+++ R+ R ++
Sbjct: 121 HGRAKVDIALCKGKKEYDKRQTLKEKEDRREMDRAIKHF 159
>gi|224824530|ref|ZP_03697637.1| SsrA-binding protein [Lutiella nitroferrum 2002]
gi|224603023|gb|EEG09199.1| SsrA-binding protein [Lutiella nitroferrum 2002]
Length = 148
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I EAG+VL G EVK++R +V + +SY ++N WL +I
Sbjct: 3 IIDNRKAYHDYFIEEKLEAGLVLEGWEVKAIRAGRVQLKESYVIWKNGAFWLFGCHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P RNRKLLL++ +I++ V R G T+V + +++ KG+ K ++ LA+G
Sbjct: 63 QSASTHVKPDPTRNRKLLLNQAQINKFIGKVERAGYTMVALDLHYT-KGMIKAEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR++ K+R+ DR+K R LR+
Sbjct: 122 KKLHDKRDSAKERELDREKQRFLRDR 147
>gi|268316595|ref|YP_003290314.1| SsrA-binding protein [Rhodothermus marinus DSM 4252]
gi|262334129|gb|ACY47926.1| SsrA-binding protein [Rhodothermus marinus DSM 4252]
Length = 154
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/135 (49%), Positives = 88/135 (65%), Gaps = 2/135 (1%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K+V+ NRKAR+ Y I + EAG+VL GTEVKSLR +VN+ D+Y T EN E++L N
Sbjct: 3 DNIKIVATNRKARHEYQIEDTLEAGLVLKGTEVKSLREGRVNLQDAYCTVENGEMYLLNC 62
Query: 69 YIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y NH P R RKLL+ KREI R A ++ G T+VP+KIYF G AK+++
Sbjct: 63 HISPYRNTGAHDNHDPLRPRKLLMHKREIERWGQAAQQKGYTIVPLKIYFK-NGRAKVEI 121
Query: 128 ALAQGKKNYDKRETE 142
LA+GKK YD+R
Sbjct: 122 GLARGKKLYDRRADI 136
>gi|15902923|ref|NP_358473.1| SsrA-binding protein [Streptococcus pneumoniae R6]
gi|116516450|ref|YP_816345.1| SsrA-binding protein [Streptococcus pneumoniae D39]
gi|148988421|ref|ZP_01819868.1| SsrA-binding protein [Streptococcus pneumoniae SP6-BS73]
gi|148992888|ref|ZP_01822507.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|148998587|ref|ZP_01826027.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|149002528|ref|ZP_01827462.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS69]
gi|149006345|ref|ZP_01830057.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|149019568|ref|ZP_01834887.1| SsrA-binding protein [Streptococcus pneumoniae SP23-BS72]
gi|168483046|ref|ZP_02707998.1| SsrA-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|168485928|ref|ZP_02710436.1| SsrA-binding protein [Streptococcus pneumoniae CDC1087-00]
gi|168490205|ref|ZP_02714404.1| SsrA-binding protein [Streptococcus pneumoniae SP195]
gi|168491066|ref|ZP_02715209.1| SsrA-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|168494406|ref|ZP_02718549.1| SsrA-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|168575639|ref|ZP_02721575.1| SsrA-binding protein [Streptococcus pneumoniae MLV-016]
gi|169833807|ref|YP_001694421.1| SsrA-binding protein [Streptococcus pneumoniae Hungary19A-6]
gi|194396988|ref|YP_002037610.1| SsrA-binding protein [Streptococcus pneumoniae G54]
gi|221231738|ref|YP_002510890.1| SsrA-binding protein [Streptococcus pneumoniae ATCC 700669]
gi|225854480|ref|YP_002735992.1| SsrA-binding protein [Streptococcus pneumoniae JJA]
gi|225861137|ref|YP_002742646.1| SsrA-binding protein [Streptococcus pneumoniae Taiwan19F-14]
gi|237650875|ref|ZP_04525127.1| SsrA-binding protein [Streptococcus pneumoniae CCRI 1974]
gi|237821326|ref|ZP_04597171.1| SsrA-binding protein [Streptococcus pneumoniae CCRI 1974M2]
gi|289167820|ref|YP_003446089.1| tmRNA(SsrA)-binding protein [Streptococcus mitis B6]
gi|298229548|ref|ZP_06963229.1| SsrA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254483|ref|ZP_06978069.1| SsrA-binding protein [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503015|ref|YP_003724955.1| SsrA-binding protein SmpB [Streptococcus pneumoniae TCH8431/19A]
gi|307067634|ref|YP_003876600.1| tmRNA-binding protein [Streptococcus pneumoniae AP200]
gi|307127474|ref|YP_003879505.1| SsrA-binding protein [Streptococcus pneumoniae 670-6B]
gi|307704705|ref|ZP_07641604.1| ssrA-binding protein [Streptococcus mitis SK597]
gi|307706473|ref|ZP_07643282.1| ssrA-binding protein [Streptococcus mitis SK321]
gi|307708610|ref|ZP_07645074.1| SsrA-binding protein [Streptococcus mitis NCTC 12261]
gi|30173271|sp|Q8DQ29|SSRP_STRR6 RecName: Full=SsrA-binding protein
gi|122278769|sp|Q04KV3|SSRP_STRP2 RecName: Full=SsrA-binding protein
gi|226706534|sp|B5E494|SSRP_STRP4 RecName: Full=SsrA-binding protein
gi|238688291|sp|B1IBD6|SSRP_STRPI RecName: Full=SsrA-binding protein
gi|254778382|sp|B8ZPD4|SSRP_STRPJ RecName: Full=SsrA-binding protein
gi|254778384|sp|C1CDX1|SSRP_STRZJ RecName: Full=SsrA-binding protein
gi|254778386|sp|C1CRS4|SSRP_STRZT RecName: Full=SsrA-binding protein
gi|15458484|gb|AAK99683.1| Small protein B [Streptococcus pneumoniae R6]
gi|116077026|gb|ABJ54746.1| SsrA-binding protein [Streptococcus pneumoniae D39]
gi|147755585|gb|EDK62632.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|147759465|gb|EDK66457.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS69]
gi|147762122|gb|EDK69084.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74]
gi|147926102|gb|EDK77176.1| SsrA-binding protein [Streptococcus pneumoniae SP6-BS73]
gi|147928340|gb|EDK79356.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|147930943|gb|EDK81923.1| SsrA-binding protein [Streptococcus pneumoniae SP23-BS72]
gi|168996309|gb|ACA36921.1| SsrA-binding protein [Streptococcus pneumoniae Hungary19A-6]
gi|172043380|gb|EDT51426.1| SsrA-binding protein [Streptococcus pneumoniae CDC1873-00]
gi|183571000|gb|EDT91528.1| SsrA-binding protein [Streptococcus pneumoniae CDC1087-00]
gi|183571446|gb|EDT91974.1| SsrA-binding protein [Streptococcus pneumoniae SP195]
gi|183574708|gb|EDT95236.1| SsrA-binding protein [Streptococcus pneumoniae CDC0288-04]
gi|183575631|gb|EDT96159.1| SsrA-binding protein [Streptococcus pneumoniae CDC3059-06]
gi|183578534|gb|EDT99062.1| SsrA-binding protein [Streptococcus pneumoniae MLV-016]
gi|194356655|gb|ACF55103.1| SsrA-binding protein [Streptococcus pneumoniae G54]
gi|220674198|emb|CAR68726.1| SsrA-binding protein [Streptococcus pneumoniae ATCC 700669]
gi|225723907|gb|ACO19760.1| SsrA-binding protein [Streptococcus pneumoniae JJA]
gi|225728190|gb|ACO24041.1| SsrA-binding protein [Streptococcus pneumoniae Taiwan19F-14]
gi|288907387|emb|CBJ22224.1| tmRNA(SsrA)-binding protein [Streptococcus mitis B6]
gi|298238610|gb|ADI69741.1| possible SsrA-binding protein SmpB [Streptococcus pneumoniae
TCH8431/19A]
gi|306409171|gb|ADM84598.1| tmRNA-binding protein [Streptococcus pneumoniae AP200]
gi|306484536|gb|ADM91405.1| SsrA-binding protein [Streptococcus pneumoniae 670-6B]
gi|307615359|gb|EFN94568.1| SsrA-binding protein [Streptococcus mitis NCTC 12261]
gi|307618183|gb|EFN97341.1| ssrA-binding protein [Streptococcus mitis SK321]
gi|307621752|gb|EFO00790.1| ssrA-binding protein [Streptococcus mitis SK597]
gi|327389253|gb|EGE87598.1| ssrA-binding protein [Streptococcus pneumoniae GA04375]
gi|332073307|gb|EGI83786.1| ssrA-binding protein [Streptococcus pneumoniae GA17570]
gi|332075590|gb|EGI86058.1| ssrA-binding protein [Streptococcus pneumoniae GA17545]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|319762643|ref|YP_004126580.1| ssra-binding protein [Alicycliphilus denitrificans BC]
gi|330824733|ref|YP_004388036.1| SsrA-binding protein [Alicycliphilus denitrificans K601]
gi|317117204|gb|ADU99692.1| SsrA-binding protein [Alicycliphilus denitrificans BC]
gi|329310105|gb|AEB84520.1| SsrA-binding protein [Alicycliphilus denitrificans K601]
Length = 157
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++DN+KA YNY EAG+VL G EVK+LR KV ++D Y ++
Sbjct: 1 MAKKPETSSR---IADNKKAAYNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIKD 57
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L I + N R +KLLL K EI RL V + G TLVP+ +++
Sbjct: 58 GELFLIGCQINPLKTASTHVNPDATRIKKLLLHKDEIRRLIGKVEQKGYTLVPLNLHWKD 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK D+ALA+GK +DKR+T K+R+ R+ R ++
Sbjct: 118 -GRAKCDIALAKGKAEHDKRDTIKEREGKREVERAMKSR 155
>gi|218282137|ref|ZP_03488436.1| hypothetical protein EUBIFOR_01017 [Eubacterium biforme DSM 3989]
gi|218216863|gb|EEC90401.1| hypothetical protein EUBIFOR_01017 [Eubacterium biforme DSM 3989]
Length = 152
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ +K +++NRKAR++Y + FEAG+VL GTE+KS+R KV + DSY +F+ E ++
Sbjct: 2 SQNQKTIAENRKARHDYELYDRFEAGLVLQGTEIKSIRRGKVQLKDSYISFQKGEAFIKG 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y NRFNH R+RKLL+ K+EI +L + R G T+VP+KIY KGLAK+++
Sbjct: 62 MHISPYEFGNRFNHDETRDRKLLMHKQEIQKLEQSARIKGYTVVPVKIYL-YKGLAKLEI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
ALA+GK +DKRE++K +D R+ + L+
Sbjct: 121 ALAKGKNLHDKRESQKAKDAQREIQKALKN 150
>gi|322376472|ref|ZP_08050965.1| SsrA-binding protein [Streptococcus sp. M334]
gi|321282279|gb|EFX59286.1| SsrA-binding protein [Streptococcus sp. M334]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK++YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKRDYDKRESIKRREQNRDIARVMKAVN 153
>gi|160938226|ref|ZP_02085581.1| hypothetical protein CLOBOL_03122 [Clostridium bolteae ATCC
BAA-613]
gi|158438599|gb|EDP16356.1| hypothetical protein CLOBOL_03122 [Clostridium bolteae ATCC
BAA-613]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K+V++N+KA ++Y I +EAGI L GTEVKS+R+ K ++ +++ + E+++
Sbjct: 2 GKESIKLVANNKKAYHDYFIDEKYEAGIELFGTEVKSIRMGKCSVKEAFVKIDRGEVYVC 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R R+LLL K EI +L + G TLVP+++YF L K++
Sbjct: 62 GMHISPYEKGNIFNKDPLRVRRLLLHKYEIMKLNGKIAEKGYTLVPLQVYFKGS-LVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR K+D R+ + + N
Sbjct: 121 VGLARGKKLYDKRADIAKKDQRRELEKEFKVKN 153
>gi|57238809|ref|YP_179945.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden]
gi|58578738|ref|YP_196950.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden]
gi|81557362|sp|Q5HC98|SSRP_EHRRW RecName: Full=SsrA-binding protein
gi|57160888|emb|CAH57793.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden]
gi|58417364|emb|CAI26568.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden]
Length = 148
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/144 (54%), Positives = 108/144 (75%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I++SY T N E+WL N +I E
Sbjct: 3 IIIENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAESYVTERNMELWLCNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y QAN NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KG+AK + + +G
Sbjct: 63 YTQANTKNHNPTRPRKLLLKKKQIYKISGNMKNDGFTVVPLFLYFNDKGIAKAKIVIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRET K RDW+R+K RILR
Sbjct: 123 KKLHDKRETIKARDWNREKSRILR 146
>gi|306834019|ref|ZP_07467140.1| SsrA-binding protein [Streptococcus bovis ATCC 700338]
gi|304423807|gb|EFM26952.1| SsrA-binding protein [Streptococcus bovis ATCC 700338]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQAPERTRKLLLKKREIEKLSNDLKGTGMTLVPLKVYLK-NGFAKVLLGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRET K+R+ DR R ++ N
Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153
>gi|283768408|ref|ZP_06341320.1| SsrA-binding protein [Bulleidia extructa W1219]
gi|283104800|gb|EFC06172.1| SsrA-binding protein [Bulleidia extructa W1219]
Length = 150
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KVV+ NR+A ++Y + FE G+VLTGTE+KS+R+ KV DSY T E W+
Sbjct: 2 DSIKVVAFNRRAAHDYFLEDRFECGMVLTGTEIKSIRLGKVQFQDSYITIRKGEAWVKML 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y N FN R+RKLLL K EI RL VR G TL+P++IY G AK+++A
Sbjct: 62 HISPYKYGNIFNVDETRDRKLLLHKLEIQRLDQKVRLKGYTLIPVRIYLK-NGKAKLEVA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK +DKRE++K+RD R+ + L+ +
Sbjct: 121 LAKGKNLHDKRESQKERDAKREMAKALKRY 150
>gi|284030121|ref|YP_003380052.1| SsrA-binding protein [Kribbella flavida DSM 17836]
gi|283809414|gb|ADB31253.1| SsrA-binding protein [Kribbella flavida DSM 17836]
Length = 173
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ V++ NRKA ++YH+ S+EAG+VL G EVK+LR + ++ +AT E EIWL
Sbjct: 16 KKPEADPVIARNRKAAHDYHLGESWEAGMVLQGAEVKALRAGRASLVGGFATVEEREIWL 75
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+IP+Y QA FN RR RKLLL + +I ++ V G+T+VP+ +YF G AK+
Sbjct: 76 HGVHIPQYSQARWFNDGSRRKRKLLLHRAQIDKIERKVNESGLTIVPVLLYFKD-GRAKV 134
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++ALA+GKK +DKR +R+ R+ R +
Sbjct: 135 EIALARGKKTWDKRHALAEREATREAERAVSRR 167
>gi|227494931|ref|ZP_03925247.1| tmRNA-binding protein [Actinomyces coleocanis DSM 15436]
gi|226831383|gb|EEH63766.1| tmRNA-binding protein [Actinomyces coleocanis DSM 15436]
Length = 174
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ N++A ++Y I EAG+VLTGTEVK+LR + ++++++ + E WL + IPE
Sbjct: 25 VIARNKRATHDYFIEDRLEAGLVLTGTEVKALRAGRASLAEAWVEIDGGEAWLRQANIPE 84
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y Q NH P R RKLL+ + E+ + V+ G T+VP+++YF G AK++L LA+G
Sbjct: 85 YAQGTWTNHAPTRKRKLLMHRSELTKWGQKVQAKGYTIVPLELYFFG-GRAKVELGLARG 143
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K+ +DKR ++R + + R +
Sbjct: 144 KQEFDKRHALRERQDNLEARREIHRF 169
>gi|224026108|ref|ZP_03644474.1| hypothetical protein BACCOPRO_02861 [Bacteroides coprophilus DSM
18228]
gi|224019344|gb|EEF77342.1| hypothetical protein BACCOPRO_02861 [Bacteroides coprophilus DSM
18228]
Length = 153
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 97/152 (63%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + N++A ++Y + ++ AGIVLTGTE+KS+R K ++ D++ F E+W+
Sbjct: 2 KTTASTNINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY + NH RR+RKLLL+K+E+ +L G T+VP +++ N +GLAK+
Sbjct: 62 KNMHIAEYFYGSYNNHAARRDRKLLLTKKELRKLQRTSDEPGFTIVPTRLFINERGLAKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ALA+GKK YDKR+T K+++ R R+ +
Sbjct: 122 VIALAKGKKQYDKRQTLKEKEDRRMMDRMFKR 153
>gi|317486909|ref|ZP_07945719.1| SsrA-binding protein [Bilophila wadsworthia 3_1_6]
gi|316921784|gb|EFV43060.1| SsrA-binding protein [Bilophila wadsworthia 3_1_6]
Length = 153
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K G P ++ DNRKAR+ Y + + EAGI LTG EVKSLR +VN +DSY F
Sbjct: 1 MSAKKSGGP---LIGDNRKARHIYEYLETIEAGISLTGPEVKSLRAGQVNFTDSYVEFRR 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +I Y A R RKLL+ +EI A V + G+T+VP K+Y
Sbjct: 58 GEAWLIGLHIAPYTNAGYVEQNADRPRKLLMHAQEIASFAAKVEQKGLTVVPSKLYLK-H 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
G K++LAL +G+K +D R K+R R R LR
Sbjct: 117 GKIKVELALGRGRKLHDHRVELKRRAETRDMQRELR 152
>gi|256831076|ref|YP_003159804.1| SsrA-binding protein [Desulfomicrobium baculatum DSM 4028]
gi|256580252|gb|ACU91388.1| SsrA-binding protein [Desulfomicrobium baculatum DSM 4028]
Length = 154
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 4/157 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K K+++ NRKAR+ Y ++ EAGI+LTG+EVKSLR KVN D Y +
Sbjct: 1 MCAKP---TGIKIIAANRKARHFYELLDFIEAGIMLTGSEVKSLRDGKVNFMDGYVRISD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L+ +I Y A H P R RKLL+ + EIH L + + + G+TLVP K+YF
Sbjct: 58 GEAFLSGVHISTYANAGYAQHVPDRERKLLMHRHEIHSLKSKMEQKGLTLVPTKLYFKD- 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G KI+LALA+GKK YD+RE K++ +R R +
Sbjct: 117 GKIKIELALAKGKKVYDRREDLKQKAVNRDTEREMNR 153
>gi|308235210|ref|ZP_07665947.1| SsrA-binding protein [Gardnerella vaginalis ATCC 14018]
gi|311114812|ref|YP_003986033.1| SsrA-binding protein [Gardnerella vaginalis ATCC 14019]
gi|310946306|gb|ADP39010.1| SsrA-binding protein [Gardnerella vaginalis ATCC 14019]
Length = 162
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 2/157 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDE 62
K G+ V+ N+KA ++Y I +EAGI LTGTEVKSLR + ++++++ E
Sbjct: 3 KKPGSDGTLTVARNKKANHDYAIEDCYEAGIALTGTEVKSLREGRASLAEAFVNIDRRGE 62
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
IWL + IPEYL NH P+R RKLLL +I +L + G T+VP++IYF
Sbjct: 63 IWLEGANIPEYLNGTWNNHAPKRKRKLLLHAIQIAKLSRQIEAKGYTIVPLRIYFKGS-Y 121
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AK+++ALA+GKK YDKR+ ++ R+ R +R N
Sbjct: 122 AKVEIALARGKKEYDKRQALREEQDKREALRAMRYKN 158
>gi|15900853|ref|NP_345457.1| SsrA-binding protein [Streptococcus pneumoniae TIGR4]
gi|111657963|ref|ZP_01408670.1| hypothetical protein SpneT_02000852 [Streptococcus pneumoniae
TIGR4]
gi|149010377|ref|ZP_01831748.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|182683921|ref|YP_001835668.1| ssrA-binding protein [Streptococcus pneumoniae CGSP14]
gi|303254443|ref|ZP_07340549.1| SsrA-binding protein [Streptococcus pneumoniae BS455]
gi|303259889|ref|ZP_07345864.1| SsrA-binding protein [Streptococcus pneumoniae SP-BS293]
gi|303262303|ref|ZP_07348247.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|303264725|ref|ZP_07350643.1| SsrA-binding protein [Streptococcus pneumoniae BS397]
gi|303267332|ref|ZP_07353192.1| SsrA-binding protein [Streptococcus pneumoniae BS457]
gi|303269137|ref|ZP_07354916.1| SsrA-binding protein [Streptococcus pneumoniae BS458]
gi|22096171|sp|Q97R56|SSRP_STRPN RecName: Full=SsrA-binding protein
gi|238691156|sp|B2IPC9|SSRP_STRPS RecName: Full=SsrA-binding protein
gi|14972451|gb|AAK75097.1| SsrA-binding protein [Streptococcus pneumoniae TIGR4]
gi|147764858|gb|EDK71787.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|182629255|gb|ACB90203.1| ssrA-binding protein [Streptococcus pneumoniae CGSP14]
gi|301801818|emb|CBW34529.1| SsrA-binding protein [Streptococcus pneumoniae INV200]
gi|302598610|gb|EFL65650.1| SsrA-binding protein [Streptococcus pneumoniae BS455]
gi|302636626|gb|EFL67117.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|302639094|gb|EFL69554.1| SsrA-binding protein [Streptococcus pneumoniae SP-BS293]
gi|302641324|gb|EFL71692.1| SsrA-binding protein [Streptococcus pneumoniae BS458]
gi|302643142|gb|EFL73429.1| SsrA-binding protein [Streptococcus pneumoniae BS457]
gi|302645812|gb|EFL76041.1| SsrA-binding protein [Streptococcus pneumoniae BS397]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQEIKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|331266541|ref|YP_004326171.1| SsrA-binding protein [Streptococcus oralis Uo5]
gi|326683213|emb|CBZ00831.1| SsrA-binding protein [Streptococcus oralis Uo5]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+RD +R R+++ N
Sbjct: 126 GKHDYDKRESIKRRDQNRDIARVMKAVN 153
>gi|197302762|ref|ZP_03167815.1| hypothetical protein RUMLAC_01491 [Ruminococcus lactaris ATCC
29176]
gi|197298160|gb|EDY32707.1| hypothetical protein RUMLAC_01491 [Ruminococcus lactaris ATCC
29176]
Length = 154
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 102/159 (64%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA ++Y I+ +E G+VL GTEVKSLR+ K +I +S+ E+
Sbjct: 1 MAKTEK-----KLIANNKKAYHDYFILEKYEVGLVLHGTEVKSLRMGKCSIKESFIRVED 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y + N FN P R RKLLL K+EI ++ ++ G+T+VP+++YF+
Sbjct: 56 GEMYIYGMHISPYEKGNIFNKDPLRVRKLLLHKKEILKISGKMKEQGITVVPLQVYFSGS 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+++ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 116 -LVKMEIGLAKGKKLYDKRDDIAKKDQKREAQREFKVRN 153
>gi|148284226|ref|YP_001248316.1| SsrA-binding protein [Orientia tsutsugamushi str. Boryong]
gi|166223234|sp|A5CCM6|SSRP_ORITB RecName: Full=SsrA-binding protein
gi|146739665|emb|CAM79458.1| SsrA-RNA-binding protein [Orientia tsutsugamushi str. Boryong]
Length = 153
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 79/147 (53%), Positives = 106/147 (72%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ NRKA++NY I EAGIVL G+E+KS+R KV+I DSYA ++EI+L NSYI
Sbjct: 6 KIVAQNRKAKFNYFIQDKMEAGIVLQGSELKSIRSGKVSIEDSYAAESSNEIFLYNSYIG 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY QANRFNH PRR RKLLL ++EI ++ + G TLV + IYFN+K K++L LA+
Sbjct: 66 EYKQANRFNHVPRRVRKLLLHRKEIQKIIGKLSVQGCTLVALSIYFNSKNKVKVELGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR K+++W +Q+ RI+R
Sbjct: 126 GKKQYDKRYAIKEQEWKKQQARIMRNK 152
>gi|308067019|ref|YP_003868624.1| SsrA-binding protein [Paenibacillus polymyxa E681]
gi|305856298|gb|ADM68086.1| SsrA-binding protein [Paenibacillus polymyxa E681]
Length = 159
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 101/159 (63%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K+ G KV++ N+KA ++Y I ++EAG+VLTGTE+KSLR + NISD++AT N
Sbjct: 1 MGKKADG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSLRNGRSNISDAFATIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EI + N +I + Q NR N P R RKLLL K +I +L +++G T+VP+KIY
Sbjct: 57 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLIGLSKQEGYTIVPLKIYVR- 115
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GKK YDKR+ KRD R R LRE
Sbjct: 116 NGYAKLLLGLGRGKKQYDKRDAAAKRDAQRDIQRALREK 154
>gi|257464017|ref|ZP_05628402.1| SsrA-binding protein [Fusobacterium sp. D12]
gi|317061538|ref|ZP_07926023.1| SsrA-binding protein [Fusobacterium sp. D12]
gi|313687214|gb|EFS24049.1| SsrA-binding protein [Fusobacterium sp. D12]
Length = 148
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KA ++Y + FEAGI L G+EVKS + KV+I +S+ N E+++ I
Sbjct: 2 ILAGNKKAYFDYFVEEKFEAGIELQGSEVKSAKAGKVSIKESFVRIINGELFIMGMSIVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N +R R+LLL K+EI RL+ V + G T+VP+ ++ + G K+++ALA+G
Sbjct: 62 WSYGSIYNPEEKRVRRLLLHKKEIRRLHEKVSQKGYTIVPLDVHLS-HGYVKVEIALARG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ KRD +R R L+E+N
Sbjct: 121 KKTYDKRESIAKRDVERDIRRSLKENN 147
>gi|291456217|ref|ZP_06595607.1| SsrA-binding protein [Bifidobacterium breve DSM 20213]
gi|291381494|gb|EFE89012.1| SsrA-binding protein [Bifidobacterium breve DSM 20213]
Length = 158
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65
+K++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL
Sbjct: 3 KEAGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFVSIDRRGEMWL 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K
Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHRVQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ALA+GK+ +DKR+ ++ R+ R +R N
Sbjct: 122 EIALARGKREFDKRQALREEQDKREALRAMRYAN 155
>gi|213858001|ref|ZP_03384972.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. M223]
Length = 154
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 2/140 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 134
Query: 120 KGLAKIDLALAQGKKNYDKR 139
K+ + +A+GKK +DKR
Sbjct: 135 NAWCKVKIGVAKGKKQHDKR 154
>gi|160892729|ref|ZP_02073519.1| hypothetical protein CLOL250_00260 [Clostridium sp. L2-50]
gi|156865770|gb|EDO59201.1| hypothetical protein CLOL250_00260 [Clostridium sp. L2-50]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K++++N+KA ++Y I +EAGI LTGTEVKS+R +I +S+ + + EI++
Sbjct: 3 KERGNKLIANNKKAYFDYFIEEKYEAGIALTGTEVKSVRQGHCSIKESFISIDKGEIYIY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
I Y + N FN P R RKLLL K EI++L A + G T+VP+K+Y GL K++
Sbjct: 63 RMNISPYEKGNIFNKDPLRTRKLLLHKYEINKLMGAQQVKGYTIVPLKVYIRD-GLVKME 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 122 IGLAKGKKLYDKRQDIAKKDVKRENEREFKIRN 154
>gi|327438856|dbj|BAK15221.1| tmRNA-binding protein [Solibacillus silvestris StLB046]
Length = 154
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I + EAG+VLTGTE+KS+R ++V + ++Y + E W+ N +I
Sbjct: 7 KVLAQNKKASHDYFIEETIEAGLVLTGTEIKSVRGARVQLKEAYISVMGGEAWVKNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q NR+NH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ + LA+
Sbjct: 67 PFDQGNRYNHDPLRERKLLLHKKQISELVGAVKRDGYTIVPLKMYIKD-GYAKLLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK+YDKR KK++ R R ++
Sbjct: 126 GKKDYDKRHDMKKKEAKRDMERAFKDR 152
>gi|119503063|ref|ZP_01625148.1| SsrA-binding protein [marine gamma proteobacterium HTCC2080]
gi|119461409|gb|EAW42499.1| SsrA-binding protein [marine gamma proteobacterium HTCC2080]
Length = 163
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 102/156 (65%), Gaps = 2/156 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
KS+ ++ N++AR++YH++ S+EAG+ L G EVKS+R +V ++DSY +N E
Sbjct: 6 KSKKKIQDNTIAQNKRARFDYHLLESYEAGLSLAGWEVKSMRAGRVQLTDSYVLMKNGEA 65
Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L + I ++ + P R RKLLL+KRE+ ++ AA+ + G T V +Y+ L
Sbjct: 66 FLFGAQISPLETVSSHYVTDPTRTRKLLLNKRELAQINAALSQKGQTCVCTALYWKGH-L 124
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK ++LA GKK +DKR+TEK +DWDRQK RI+R++
Sbjct: 125 AKAKISLAAGKKQHDKRDTEKAKDWDRQKARIVRDN 160
>gi|57233786|ref|YP_182206.1| SsrA-binding protein [Dehalococcoides ethenogenes 195]
gi|123618235|sp|Q3Z6E3|SSRP_DEHE1 RecName: Full=SsrA-binding protein
gi|57224234|gb|AAW39291.1| SsrA-binding protein [Dehalococcoides ethenogenes 195]
Length = 172
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I
Sbjct: 24 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 83
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G
Sbjct: 84 YECSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 142
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR+T KRD +R+ R ++ N
Sbjct: 143 KKLYDKRDTITKRDTERELEREVKYRN 169
>gi|212716466|ref|ZP_03324594.1| hypothetical protein BIFCAT_01390 [Bifidobacterium catenulatum DSM
16992]
gi|212660719|gb|EEB21294.1| hypothetical protein BIFCAT_01390 [Bifidobacterium catenulatum DSM
16992]
Length = 159
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 6/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+
Sbjct: 1 MAK----EQGMKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDR 56
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL + IPEYL NH P+R RKLLL +I +L + G T++P+ +YF
Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAQIDKLARQSQAKGFTIIPLSLYFKD 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K ++ALA+GKK +DKR+ ++ R+ R +R N
Sbjct: 117 -GRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYAN 155
>gi|95929210|ref|ZP_01311954.1| SsrA-binding protein [Desulfuromonas acetoxidans DSM 684]
gi|95134708|gb|EAT16363.1| SsrA-binding protein [Desulfuromonas acetoxidans DSM 684]
Length = 150
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/149 (45%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K+++ N+KA + Y+I ++EAG+VLTGTEVKSLR+ VNI +S+ E+++ N
Sbjct: 2 GIKIIATNKKAYHEYYIEETYEAGMVLTGTEVKSLRLGNVNIKESFCRIMKGELFINNMN 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q NR NH P R RKLLL K EI +L V G++LVP KIYF G K+++ +
Sbjct: 62 IGPYEQGNRENHDPTRIRKLLLHKYEIDKLVRKVEEKGLSLVPTKIYFK-NGYVKLEVGV 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ KK+ DR+ +I +E+
Sbjct: 121 GRGKKLHDKRESLKKKQADREMAKIFKEN 149
>gi|88798369|ref|ZP_01113954.1| SsrA-binding protein [Reinekea sp. MED297]
gi|88778809|gb|EAR09999.1| SsrA-binding protein [Reinekea sp. MED297]
Length = 162
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 2/159 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
S K + ++ N+KAR++YHIV +EAG+ L G EVKSLR K+ + DSY F++
Sbjct: 4 SKKKHTSTAGGSIAQNKKARHDYHIVDKYEAGLSLLGWEVKSLRAGKLQLVDSYIIFKDG 63
Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L ++I + P R+RKLLL + EI R+ ++ G T V + +Y+
Sbjct: 64 EAYLIGAHITPLNTASTHVIADPSRSRKLLLHRNEIDRIERQAQQTGYTSVCLAVYWKGN 123
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K ++AL +GK+ +DKR K++DW R+K R+L++ N
Sbjct: 124 -KIKAEVALVKGKQLHDKRAASKEKDWGREKQRVLKQFN 161
>gi|317133142|ref|YP_004092456.1| SsrA-binding protein [Ethanoligenens harbinense YUAN-3]
gi|315471121|gb|ADU27725.1| SsrA-binding protein [Ethanoligenens harbinense YUAN-3]
Length = 154
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K+ VS N+KA ++Y + +FEAG+ L GTEVKS+R +VN+ D++ +N E+++ +I
Sbjct: 6 KRSVSKNKKAWHDYFVQEAFEAGVELFGTEVKSVRAGRVNLKDAWCDIDNGELFVRGMHI 65
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + N FN P R R+LL+ KREI RL+ +++ G+TLVP+++YF L KI++ L
Sbjct: 66 SPYEKGNIFNRDPLRRRRLLMHKREIMRLFGQLKQQGLTLVPLEVYFKGP-LVKIEIGLC 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKR KRD R+ R ++E N
Sbjct: 125 KGKKLYDKRADIAKRDASREIDRAIKERN 153
>gi|73663215|ref|YP_301996.1| SsrA-binding protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|123642026|sp|Q49W09|SSRP_STAS1 RecName: Full=SsrA-binding protein
gi|72495730|dbj|BAE19051.1| tmRNA-binding protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 154
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA E
Sbjct: 1 MPKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVNRGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N +I Y + NRFNH PRR+RKLLL KREI +L R G ++VP+K+Y G
Sbjct: 59 MFLNNMHIAPYEEGNRFNHDPRRSRKLLLHKREIAKLGERTREVGYSIVPLKLYLK-HGH 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVQRDVAREMKAR 153
>gi|229828806|ref|ZP_04454875.1| hypothetical protein GCWU000342_00889 [Shuttleworthia satelles DSM
14600]
gi|229791969|gb|EEP28083.1| hypothetical protein GCWU000342_00889 [Shuttleworthia satelles DSM
14600]
Length = 156
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KAR+ Y + +EAGI L GTEVKSLR+ K +I +++ +N E++L +I
Sbjct: 9 LIANNKKARHEYFLDEFYEAGIELAGTEVKSLRMGKCSIKEAWVRIQNGEVFLYQMHISP 68
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FN P R RKLLL K +I +L ++ G T+VP+++YF K LAK+++ALA+G
Sbjct: 69 YEKGNLFNRDPLRPRKLLLHKAQIRKLEQQIKTKGYTIVPVRVYFK-KSLAKVEIALARG 127
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR +RD +RQ + + N
Sbjct: 128 KKLYDKRADLARRDQERQAQKEFKIRN 154
>gi|42520608|ref|NP_966523.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|58698568|ref|ZP_00373468.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila
ananassae]
gi|99035936|ref|ZP_01314982.1| hypothetical protein Wendoof_01000167 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|225630384|ref|YP_002727175.1| SsrA-binding protein [Wolbachia sp. wRi]
gi|59798788|sp|Q73H09|SSRP_WOLPM RecName: Full=SsrA-binding protein
gi|254778390|sp|C0R392|SSRP_WOLWR RecName: Full=SsrA-binding protein
gi|42410347|gb|AAS14457.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila
melanogaster]
gi|58534920|gb|EAL59019.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila
ananassae]
gi|225592365|gb|ACN95384.1| SsrA-binding protein [Wolbachia sp. wRi]
Length = 149
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 108/146 (73%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V+++NRKAR+ Y I+ FEAG+VL +EVKSLR KVNISD+Y +N E+WL N +I E
Sbjct: 3 VIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y ANR NH P+R RKLLL K+EI++L ++ G+T+VP+ +YFN KG AK +A+ +G
Sbjct: 63 YKAANRKNHKPKRERKLLLHKKEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR T K+R+WDR+K R+ + +
Sbjct: 123 KKLYDKRATIKQREWDREKSRLSKNN 148
>gi|134094580|ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
gi|133738483|emb|CAL61528.1| SsrA-binding protein [Herminiimonas arsenicoxydans]
Length = 149
Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I FEAGIVL G EVK++R + + ++Y NDEI+L ++I
Sbjct: 3 IVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL EI +L V R G TLVP+ +++ KG K ++ LA+G
Sbjct: 63 ASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHY-QKGYIKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR++EK+RD R+ +++++
Sbjct: 122 KKQHDKRDSEKQRDTQREIQAVMKQN 147
>gi|221066864|ref|ZP_03542969.1| SsrA-binding protein [Comamonas testosteroni KF-1]
gi|264678538|ref|YP_003278445.1| SsrA-binding protein [Comamonas testosteroni CNB-2]
gi|299530960|ref|ZP_07044373.1| SsrA-binding protein [Comamonas testosteroni S44]
gi|220711887|gb|EED67255.1| SsrA-binding protein [Comamonas testosteroni KF-1]
gi|262209051|gb|ACY33149.1| SsrA-binding protein [Comamonas testosteroni CNB-2]
gi|298720917|gb|EFI61861.1| SsrA-binding protein [Comamonas testosteroni S44]
Length = 157
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 5/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++DN+KA +NY EAG+VL G EVK+LR KV ++D Y ++
Sbjct: 1 MAKKPETSSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALRSGKVQLTDGYVLIKD 57
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L I + N R +KLLL K EI RL V + G TLVP+ +++
Sbjct: 58 GELFLLGCQINPLKTASTHVNPDSARIKKLLLKKDEIKRLVGKVEQKGYTLVPINLHWK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K ++ALA+GK +DKR+ K R+ R+ R ++ N
Sbjct: 117 NGYVKCEIALAKGKAEHDKRDVIKDREGKREVERAMKNRN 156
>gi|118497754|ref|YP_898804.1| SsrA-binding protein [Francisella tularensis subsp. novicida U112]
gi|194323726|ref|ZP_03057502.1| SsrA-binding protein [Francisella tularensis subsp. novicida FTE]
gi|208779819|ref|ZP_03247163.1| SsrA-binding protein [Francisella novicida FTG]
gi|254373113|ref|ZP_04988602.1| SsrA-binding protein [Francisella tularensis subsp. novicida
GA99-3549]
gi|254374564|ref|ZP_04990045.1| SsrA-binding protein [Francisella novicida GA99-3548]
gi|166223219|sp|A0Q735|SSRP_FRATN RecName: Full=SsrA-binding protein
gi|118423660|gb|ABK90050.1| SsrA (tmRNA)-binding protein [Francisella novicida U112]
gi|151570840|gb|EDN36494.1| SsrA-binding protein [Francisella novicida GA99-3549]
gi|151572283|gb|EDN37937.1| SsrA-binding protein [Francisella novicida GA99-3548]
gi|194322090|gb|EDX19572.1| SsrA-binding protein [Francisella tularensis subsp. novicida FTE]
gi|208744274|gb|EDZ90574.1| SsrA-binding protein [Francisella novicida FTG]
Length = 157
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ ++ E W
Sbjct: 2 SKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKHGEAW 61
Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N P + RKLLL++REI+++ + + G T VP+ +Y+
Sbjct: 62 LFNCLITPLLSASTHVVADAAATRKLLLNRREINKIMGRIEQKGFTCVPLAMYWKGP-RV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALAQGKK +DKR+ +K +DW R+K R+ ++
Sbjct: 121 KVEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 154
>gi|282850296|ref|ZP_06259675.1| SsrA-binding protein [Veillonella parvula ATCC 17745]
gi|294793804|ref|ZP_06758941.1| SsrA-binding protein [Veillonella sp. 3_1_44]
gi|282579789|gb|EFB85193.1| SsrA-binding protein [Veillonella parvula ATCC 17745]
gi|294455374|gb|EFG23746.1| SsrA-binding protein [Veillonella sp. 3_1_44]
Length = 156
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS + +++DNRKAR+++HI ++EAGI LTGTE+KS+R K+N+ DS+ +
Sbjct: 1 MAKKSSPS----LIADNRKARHDFHIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+
Sbjct: 57 GEILLYGVHISPYEQGNRFNHEPERTRKLLMHKSEINKLHAQVKEKGFSLVPLNFHFS-H 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ + L GKK YDKR+ +RD R + ++E
Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRIKE 152
>gi|294140124|ref|YP_003556102.1| SsrA-binding protein [Shewanella violacea DSS12]
gi|293326593|dbj|BAJ01324.1| SsrA-binding protein [Shewanella violacea DSS12]
Length = 165
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 3/160 (1%)
Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY
Sbjct: 1 MAKKNAKNSKNSSASIARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFM 60
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E +L I + P R+RKLLL ++E+ +L V R G ++VP+ +Y+
Sbjct: 61 RDGEAFLFGCTIAPLNTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI++ L +GKK +DKR+ K R+W +K R +++
Sbjct: 121 QKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTMKK 160
>gi|15923772|ref|NP_371306.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15926458|ref|NP_373991.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus N315]
gi|148267241|ref|YP_001246184.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH9]
gi|150393290|ref|YP_001315965.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH1]
gi|156979109|ref|YP_001441368.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Mu3]
gi|253315160|ref|ZP_04838373.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|253731411|ref|ZP_04865576.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|255005572|ref|ZP_05144173.2| SsrA-binding protein [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257794897|ref|ZP_05643876.1| SsrA-binding protein [Staphylococcus aureus A9781]
gi|258418214|ref|ZP_05682479.1| ssrA-binding protein [Staphylococcus aureus A9763]
gi|258421511|ref|ZP_05684436.1| SsrA-binding protein [Staphylococcus aureus A9719]
gi|258439146|ref|ZP_05690190.1| ssrA-binding protein [Staphylococcus aureus A9299]
gi|258440926|ref|ZP_05690761.1| ssrA-binding protein [Staphylococcus aureus A8115]
gi|258445756|ref|ZP_05693933.1| ssrA-binding protein [Staphylococcus aureus A6300]
gi|258449568|ref|ZP_05697670.1| ssrA-binding protein [Staphylococcus aureus A6224]
gi|258453968|ref|ZP_05701940.1| ssrA-binding protein [Staphylococcus aureus A5937]
gi|269202404|ref|YP_003281673.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ED98]
gi|282895077|ref|ZP_06303298.1| SsrA-binding protein [Staphylococcus aureus A8117]
gi|282926649|ref|ZP_06334279.1| SsrA-binding protein [Staphylococcus aureus A10102]
gi|295406505|ref|ZP_06816311.1| SsrA-binding protein [Staphylococcus aureus A8819]
gi|296276296|ref|ZP_06858803.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MR1]
gi|297245231|ref|ZP_06929105.1| SsrA-binding protein [Staphylococcus aureus A8796]
gi|54039641|sp|P66863|SSRP_STAAN RecName: Full=SsrA-binding protein
gi|54042228|sp|P66862|SSRP_STAAM RecName: Full=SsrA-binding protein
gi|166223459|sp|A7WZT9|SSRP_STAA1 RecName: Full=SsrA-binding protein
gi|189046848|sp|A6TZR0|SSRP_STAA2 RecName: Full=SsrA-binding protein
gi|189046849|sp|A5IQY5|SSRP_STAA9 RecName: Full=SsrA-binding protein
gi|13700672|dbj|BAB41969.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus N315]
gi|14246551|dbj|BAB56944.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus Mu50]
gi|147740310|gb|ABQ48608.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH9]
gi|149945742|gb|ABR51678.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH1]
gi|156721244|dbj|BAF77661.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus Mu3]
gi|253724861|gb|EES93590.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257788869|gb|EEV27209.1| SsrA-binding protein [Staphylococcus aureus A9781]
gi|257839007|gb|EEV63486.1| ssrA-binding protein [Staphylococcus aureus A9763]
gi|257842437|gb|EEV66861.1| SsrA-binding protein [Staphylococcus aureus A9719]
gi|257847718|gb|EEV71715.1| ssrA-binding protein [Staphylococcus aureus A9299]
gi|257852440|gb|EEV76361.1| ssrA-binding protein [Staphylococcus aureus A8115]
gi|257855332|gb|EEV78270.1| ssrA-binding protein [Staphylococcus aureus A6300]
gi|257857076|gb|EEV79975.1| ssrA-binding protein [Staphylococcus aureus A6224]
gi|257863833|gb|EEV86589.1| ssrA-binding protein [Staphylococcus aureus A5937]
gi|262074694|gb|ACY10667.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ED98]
gi|282591542|gb|EFB96614.1| SsrA-binding protein [Staphylococcus aureus A10102]
gi|282762573|gb|EFC02712.1| SsrA-binding protein [Staphylococcus aureus A8117]
gi|285816483|gb|ADC36970.1| tmRNA-binding protein SmpB [Staphylococcus aureus 04-02981]
gi|294968650|gb|EFG44673.1| SsrA-binding protein [Staphylococcus aureus A8819]
gi|297177902|gb|EFH37151.1| SsrA-binding protein [Staphylococcus aureus A8796]
gi|312829273|emb|CBX34115.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129011|gb|EFT85008.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329724545|gb|EGG61052.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 21172]
Length = 154
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +N E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N +I Y + NRFNH P R+RKLLL KREI +L R G ++VP+K+Y G
Sbjct: 59 MYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIFKLGEQTREIGYSIVPLKLYLK-HGH 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKAR 153
>gi|189425745|ref|YP_001952922.1| SsrA-binding protein [Geobacter lovleyi SZ]
gi|189422004|gb|ACD96402.1| SsrA-binding protein [Geobacter lovleyi SZ]
Length = 151
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K++ N++A + YHI EAGIVL GTEVKSLR K N+ D++ N E WL N +
Sbjct: 2 SEKLICANKRAFHEYHIEERLEAGIVLVGTEVKSLRAGKANLVDAFVLVRNGEAWLHNLH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NR NH P R RKLLL REI +L+A +R+DG T VP+++YF G K+++ +
Sbjct: 62 IAPYDFGNRQNHDPERQRKLLLHSREIEKLHARIRQDGCTAVPLRLYFKE-GKVKVEVGV 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156
A+GKK +DKRE KK+D R+ + +
Sbjct: 121 AKGKKLHDKREDLKKKDLKREHAKEFK 147
>gi|90581515|ref|ZP_01237308.1| SsrA-binding protein [Vibrio angustum S14]
gi|90437277|gb|EAS62475.1| SsrA-binding protein [Vibrio angustum S14]
Length = 160
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N+ AR+ + I +EAG+ L G EVK++R KVN+++SY N
Sbjct: 1 MAKKPNKKPGSNTIAKNKTARFEFAINDEYEAGMQLQGWEVKAIRDGKVNMTESYVFLRN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +++ I + P R RKLLL++REI +L AV RDG T+V + +Y+ A
Sbjct: 61 GEAFISGLTITPLNAASTHVVADPTRVRKLLLNRREIDKLAGAVNRDGETIVALNMYWKA 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + A+GKK +DKR K +DW R K RIL+ N
Sbjct: 121 S-FVKIKIGTARGKKLHDKRADSKSKDWQRDKARILKSSN 159
>gi|197124127|ref|YP_002136078.1| SsrA-binding protein [Anaeromyxobacter sp. K]
gi|220918907|ref|YP_002494211.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|238689860|sp|B4UDZ1|SSRP_ANASK RecName: Full=SsrA-binding protein
gi|254772992|sp|B8J7G5|SSRP_ANAD2 RecName: Full=SsrA-binding protein
gi|196173976|gb|ACG74949.1| SsrA-binding protein [Anaeromyxobacter sp. K]
gi|219956761|gb|ACL67145.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 163
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 66/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76
NR+AR++Y + ++EAG+VLTG+EVKSLR VN+SD+YA +E+WL N I EY QA
Sbjct: 20 NRRARFDYDVEDTWEAGLVLTGSEVKSLREGNVNLSDAYAMPRGEELWLLNCRIGEYQQA 79
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
F H P R+RKLL+++ EI R+ V + G TLVP++IYF G AK++L LA+G+ +
Sbjct: 80 AHFGHAPLRDRKLLMNRAEIDRVRGKVEQRGYTLVPLRIYFKQ-GWAKVELGLARGRSHE 138
Query: 137 DKRETEKKRDWDRQKHRILRE 157
D+R +R+ R+ R L
Sbjct: 139 DRRGAIAERESKREMDRALAR 159
>gi|84616869|emb|CAJ13763.1| SsrA-binding protein [Desulfococcus multivorans]
Length = 153
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 1/151 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+K++++N+KAR+NY I+ FEAG+VL GTEVKSLR+ K ++ D+YA N E+++
Sbjct: 2 KKEGRKLIANNKKARFNYFIIDKFEAGMVLLGTEVKSLRMGKTHLKDAYAKIVNGEVFVY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y A NH P R RKLLL EI RLY V G++L+PM +YF G K+
Sbjct: 62 QMHIGPYPFAYYDNHDPMRPRKLLLHNYEIKRLYGKVNEQGLSLIPMDLYFKD-GKVKMT 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LAL +GK+ +DKR+ ++RD R R ++
Sbjct: 121 LALCKGKRLHDKRDAIRERDTRRDMDRSRKD 151
>gi|307709155|ref|ZP_07645614.1| ssrA-binding protein [Streptococcus mitis SK564]
gi|307620101|gb|EFN99218.1| ssrA-binding protein [Streptococcus mitis SK564]
Length = 155
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG++LTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMILTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKQREQNRDIARVMKAVN 153
>gi|319939209|ref|ZP_08013572.1| SsrA-binding protein [Streptococcus anginosus 1_2_62CV]
gi|319811605|gb|EFW07881.1| SsrA-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 155
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + E G+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTIETGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQDPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K R+ +R R ++ +N
Sbjct: 126 GKHDYDKRESIKLREQNRDIARTIKAYN 153
>gi|251781953|ref|YP_002996255.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|242390582|dbj|BAH81041.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. equisimilis
GGS_124]
gi|323126779|gb|ADX24076.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. equisimilis
ATCC 12394]
Length = 155
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 LLAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLINVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERIRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K +YDKRET K+R+ DR R+++ N
Sbjct: 127 KHDYDKRETIKRREQDRDIKRVMKSVN 153
>gi|58616798|ref|YP_195997.1| SsrA-binding protein [Ehrlichia ruminantium str. Gardel]
gi|75432643|sp|Q5FF69|SSRP_EHRRG RecName: Full=SsrA-binding protein
gi|58416410|emb|CAI27523.1| SsrA-binding protein [Ehrlichia ruminantium str. Gardel]
Length = 148
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/144 (54%), Positives = 109/144 (75%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I++SY T N E+WL N +I E
Sbjct: 3 IIIENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAESYVTERNMELWLCNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y QAN NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KG+AK + + +G
Sbjct: 63 YTQANTKNHNPTRPRKLLLKKKQIYKISGNMKNDGFTVVPLFLYFNDKGIAKAKIVIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRET K RDW+R+K+RILR
Sbjct: 123 KKLHDKRETIKARDWNREKNRILR 146
>gi|59712609|ref|YP_205385.1| SsrA-binding protein [Vibrio fischeri ES114]
gi|67461860|sp|Q5E399|SSRP_VIBF1 RecName: Full=SsrA-binding protein
gi|59480710|gb|AAW86497.1| SsrA-binding protein [Vibrio fischeri ES114]
Length = 161
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N++AR+ Y I EAGI L G EVKSLR KVNI++SY
Sbjct: 1 MAKKKSKDKAGSNTIAMNKQARHEYFIDDEIEAGIELQGWEVKSLRSGKVNIAESYVYVR 60
Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ EI+++ I + P R RKLL+S++EI L V R+GMTLV +Y+
Sbjct: 61 DGEIFISGMTITPLQAASTHVIANPTRIRKLLMSRKEIDNLIGRVNREGMTLVATTMYW- 119
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ AKI + +A+GKK +DKR K++DW+R K RI++
Sbjct: 120 VRSWAKIKVGVAKGKKLHDKRTDSKEKDWNRDKARIMK 157
>gi|306827850|ref|ZP_07461119.1| SsrA-binding protein [Streptococcus pyogenes ATCC 10782]
gi|304429959|gb|EFM32999.1| SsrA-binding protein [Streptococcus pyogenes ATCC 10782]
Length = 155
Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR+ YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARHEYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLENELKGSGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K YDKRET K+RD +R + ++ +N
Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153
>gi|86160098|ref|YP_466883.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-C]
gi|123496775|sp|Q2IFT5|SSRP_ANADE RecName: Full=SsrA-binding protein
gi|85776609|gb|ABC83446.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-C]
Length = 163
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 67/141 (47%), Positives = 95/141 (67%), Gaps = 1/141 (0%)
Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76
NR+AR++Y I ++EAG+VLTG+EVKSLR VN+SD+YA +E+WL N I EY QA
Sbjct: 20 NRRARFDYDIEDTWEAGLVLTGSEVKSLREGNVNLSDAYAMPRGEELWLLNCRIGEYKQA 79
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
F H P R+RKLL+++ EI R+ V + G TLVP++IYF G AK++L LA+G+ +
Sbjct: 80 AHFGHAPLRDRKLLMNRAEIDRVRGKVEQRGYTLVPLRIYFKQ-GWAKVELGLARGRSHE 138
Query: 137 DKRETEKKRDWDRQKHRILRE 157
D+R +R+ R+ R L
Sbjct: 139 DRRGAIAERESKREMDRALAR 159
>gi|329119829|ref|ZP_08248503.1| SsrA-binding protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327463985|gb|EGF10296.1| SsrA-binding protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 148
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKA ++Y I EAG+VL G EVK++R +V + +SY ++ D +L S+I
Sbjct: 3 IANNRKAYHDYFIEDEIEAGLVLDGWEVKAVRAGRVQLKESYIHWKKDAFYLVGSHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI++L V R G TLVP+ +++ +G K+D+ LA+G
Sbjct: 63 PTASTHVRPDPVRARKLLLKQGEINKLIGKVERSGYTLVPLNLHYK-RGYIKMDIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146
>gi|205375139|ref|ZP_03227930.1| SsrA-binding protein [Bacillus coahuilensis m4-4]
Length = 154
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 104/147 (70%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ NRKA ++Y I ++EAGIVL GTE+KS+R S+VN+ +S+A +N E+++ N +I
Sbjct: 7 NVIAQNRKANHDYFIEETYEAGIVLQGTEIKSVRQSRVNLKESFAKIQNGEVFVYNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL K++I++L + G +LVP+K+Y G AK+ L LA+
Sbjct: 67 AYEQGNRYNHDPIRTRKLLLHKKQINKLIGLTKEKGYSLVPLKLYIKD-GYAKVLLGLAR 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKNYDKRE+ KK++ +RQ R ++
Sbjct: 126 GKKNYDKRESLKKKEANRQIERAFKDR 152
>gi|313893295|ref|ZP_07826870.1| SsrA-binding protein [Veillonella sp. oral taxon 158 str. F0412]
gi|313442191|gb|EFR60608.1| SsrA-binding protein [Veillonella sp. oral taxon 158 str. F0412]
Length = 156
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS + +++DNRKAR+++HI ++EAGI LTGTE+KS+R K+N+ DS+ +
Sbjct: 1 MAKKSSPS----LIADNRKARHDFHIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+
Sbjct: 57 GEILLYGVHISPYEQGNRFNHEPERTRKLLMHKAEINKLHAQVKEKGFSLVPLNFHFS-H 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ + L GKK YDKR+ +RD R + ++E
Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRIKE 152
>gi|238917113|ref|YP_002930630.1| SsrA-binding protein [Eubacterium eligens ATCC 27750]
gi|238872473|gb|ACR72183.1| SsrA-binding protein [Eubacterium eligens ATCC 27750]
Length = 164
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K+ +++++N+KA ++Y I +EAG+VL GTEVKS+R K +I +SY EN
Sbjct: 5 MASKT-SASGNRLIANNKKAYFDYFIEEKYEAGMVLHGTEVKSIRAGKCSIKESYIKIEN 63
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ I Y + N FN P R +KLLL K +I++L + G TLVP+++Y
Sbjct: 64 GEVYVLGMNITPYEKGNIFNKDPLRPKKLLLHKNQINKLTGELTIKGYTLVPLQVYLKE- 122
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K+++ L +GKKN+DKR++ K+D R + + N
Sbjct: 123 GKVKMEIGLGKGKKNFDKRDSIAKKDQIRDAQKEFKNKN 161
>gi|315613004|ref|ZP_07887915.1| SsrA-binding protein [Streptococcus sanguinis ATCC 49296]
gi|315315114|gb|EFU63155.1| SsrA-binding protein [Streptococcus sanguinis ATCC 49296]
Length = 155
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA ++Y IV + EAGIVLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGIVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|257453219|ref|ZP_05618518.1| SsrA-binding protein [Fusobacterium sp. 3_1_5R]
gi|257467191|ref|ZP_05631502.1| SsrA-binding protein [Fusobacterium gonidiaformans ATCC 25563]
gi|315918321|ref|ZP_07914561.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317059753|ref|ZP_07924238.1| SsrA-binding protein [Fusobacterium sp. 3_1_5R]
gi|313685429|gb|EFS22264.1| SsrA-binding protein [Fusobacterium sp. 3_1_5R]
gi|313692196|gb|EFS29031.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 148
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KA ++Y + EAGI L G+EVKS + KV+I +S+ N E+++ I
Sbjct: 2 ILAGNKKAYFDYFVEDKLEAGIELQGSEVKSAKAGKVSIKESFIRIINGELFIMGMSIVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR R+LLL K+EI RL+ V + G T+VP+ ++ + G K+++ALA+G
Sbjct: 62 WSFGSIYNPEERRVRRLLLHKKEIRRLHEKVSQKGYTIVPLDVHLS-HGYVKLEIALARG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ KRD +R R L+E+N
Sbjct: 121 KKTYDKRESIAKRDSERDIRRSLKENN 147
>gi|89072611|ref|ZP_01159183.1| SsrA-binding protein [Photobacterium sp. SKA34]
gi|89051715|gb|EAR57168.1| SsrA-binding protein [Photobacterium sp. SKA34]
Length = 160
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N+ AR+ + I +EAG+VL G EVK++R KVN+++SY N
Sbjct: 1 MAKKPNKKPGSNTIAKNKSARFEFAIGDEYEAGMVLQGWEVKAIRDGKVNMTESYVFLRN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
DE +++ I + P R RKLLL++RE+ +L +V R+G T+V + +Y++
Sbjct: 61 DEAFISGLTIAPLNAASTHVVADPTRVRKLLLNRRELRKLADSVNREGDTIVALNMYWST 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + A+GKK +DKR K +DW R K RIL+ +N
Sbjct: 121 S-FVKIKIGTARGKKLHDKRADSKAKDWQRDKARILKGNN 159
>gi|198275591|ref|ZP_03208122.1| hypothetical protein BACPLE_01756 [Bacteroides plebeius DSM 17135]
gi|198271220|gb|EDY95490.1| hypothetical protein BACPLE_01756 [Bacteroides plebeius DSM 17135]
Length = 152
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 96/148 (64%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+ N++A ++Y + ++ AGIVLTGTE+KS+R K ++ D++ F E+W+ N +
Sbjct: 5 SNNINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWVKNMH 64
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY + NH RR+RKLLL+K+E+ +L G T+VP ++Y N +GLAK+ +AL
Sbjct: 65 IAEYFYGSYNNHTARRDRKLLLTKKELRKLQRTSDEPGFTIVPTRMYINERGLAKVVIAL 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GKK YDKR+T K+++ R R+ +
Sbjct: 125 AKGKKQYDKRQTLKEKEDRRMMDRMFKR 152
>gi|330994826|ref|ZP_08318748.1| SsrA-binding protein [Gluconacetobacter sp. SXCC-1]
gi|329758087|gb|EGG74609.1| SsrA-binding protein [Gluconacetobacter sp. SXCC-1]
Length = 164
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGN--PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K+RG+ + + NRK R+NY IV + EAG+VL G EVKSLR+ + I+++YA
Sbjct: 1 MAAKNRGSGMISTGIAAQNRKGRFNYTIVETVEAGLVLKGPEVKSLRMGRATINEAYAGE 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E+WL NSYIPEY PR RKLLL K+++ +L R+G+TLVP+ I+FN
Sbjct: 61 RNGELWLINSYIPEYQGGVLSRFEPRAPRKLLLHKKQVDKLLGETARNGVTLVPLDIHFN 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++GLAK+ L + +G+K DKR+ RDW R K R++R
Sbjct: 121 SRGLAKLTLGVGEGRKKADKRQAIADRDWARDKARLIRNK 160
>gi|228474436|ref|ZP_04059171.1| SsrA-binding protein [Staphylococcus hominis SK119]
gi|314936916|ref|ZP_07844263.1| SsrA-binding protein [Staphylococcus hominis subsp. hominis C80]
gi|228271795|gb|EEK13142.1| SsrA-binding protein [Staphylococcus hominis SK119]
gi|313655535|gb|EFS19280.1| SsrA-binding protein [Staphylococcus hominis subsp. hominis C80]
Length = 156
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +
Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I Y + NRFNH P R+RKLLL K+EI +L R G +++P+K+Y
Sbjct: 59 GEMYINNMHIAPYEEGNRFNHDPLRSRKLLLHKKEIIKLGERTREIGYSIIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKK +DKR+ K + R R ++
Sbjct: 118 GQCKVLLGIARGKKLHDKRQALKDKAMKRDVDRAMKAR 155
>gi|21282472|ref|NP_645560.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MW2]
gi|49483039|ref|YP_040263.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MRSA252]
gi|49485653|ref|YP_042874.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MSSA476]
gi|57650123|ref|YP_185721.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus COL]
gi|82750489|ref|YP_416230.1| SsrA-binding protein [Staphylococcus aureus RF122]
gi|87162186|ref|YP_493466.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|88194564|ref|YP_499360.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|151220962|ref|YP_001331784.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus str.
Newman]
gi|161509052|ref|YP_001574711.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|221142196|ref|ZP_03566689.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus str.
JKD6009]
gi|253732769|ref|ZP_04866934.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|257424902|ref|ZP_05601329.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257427570|ref|ZP_05603969.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 65-1322]
gi|257430201|ref|ZP_05606585.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257432902|ref|ZP_05609262.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus E1410]
gi|257435806|ref|ZP_05611854.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M876]
gi|258423431|ref|ZP_05686322.1| SsrA-binding protein [Staphylococcus aureus A9635]
gi|258452171|ref|ZP_05700187.1| tmRNA-binding protein [Staphylococcus aureus A5948]
gi|262050047|ref|ZP_06022904.1| SsrA-binding protein [Staphylococcus aureus D30]
gi|262052707|ref|ZP_06024898.1| SsrA-binding protein [Staphylococcus aureus 930918-3]
gi|282903413|ref|ZP_06311304.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C160]
gi|282905192|ref|ZP_06313049.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282908172|ref|ZP_06316003.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910429|ref|ZP_06318233.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus WBG10049]
gi|282913625|ref|ZP_06321414.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M899]
gi|282916125|ref|ZP_06323888.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus D139]
gi|282918576|ref|ZP_06326313.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C427]
gi|282922080|ref|ZP_06329777.1| SsrA-binding protein [Staphylococcus aureus A9765]
gi|282923542|ref|ZP_06331222.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C101]
gi|283769945|ref|ZP_06342837.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus H19]
gi|283957615|ref|ZP_06375068.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284023804|ref|ZP_06378202.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 132]
gi|293500667|ref|ZP_06666518.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
gi|293509616|ref|ZP_06668327.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M809]
gi|293524202|ref|ZP_06670889.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M1015]
gi|294850510|ref|ZP_06791239.1| SsrA-binding protein [Staphylococcus aureus A9754]
gi|295427361|ref|ZP_06819996.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|297208490|ref|ZP_06924919.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297590283|ref|ZP_06948922.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MN8]
gi|300912582|ref|ZP_07130025.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH70]
gi|304381595|ref|ZP_07364245.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|23822165|sp|Q8NXL2|SSRP_STAAW RecName: Full=SsrA-binding protein
gi|56749536|sp|Q6GB49|SSRP_STAAS RecName: Full=SsrA-binding protein
gi|56749583|sp|Q6GIK9|SSRP_STAAR RecName: Full=SsrA-binding protein
gi|67461881|sp|Q5HHN6|SSRP_STAAC RecName: Full=SsrA-binding protein
gi|122539962|sp|Q2G023|SSRP_STAA8 RecName: Full=SsrA-binding protein
gi|123486724|sp|Q2FIL2|SSRP_STAA3 RecName: Full=SsrA-binding protein
gi|123548795|sp|Q2YWK9|SSRP_STAAB RecName: Full=SsrA-binding protein
gi|172048801|sp|A6QF90|SSRP_STAAE RecName: Full=SsrA-binding protein
gi|189046850|sp|A8Z1A9|SSRP_STAAT RecName: Full=SsrA-binding protein
gi|21203909|dbj|BAB94608.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus MW2]
gi|49241168|emb|CAG39846.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244096|emb|CAG42522.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284309|gb|AAW36403.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus COL]
gi|82656020|emb|CAI80425.1| tmRNA and SsrA-binding protein [Staphylococcus aureus RF122]
gi|87128160|gb|ABD22674.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87202122|gb|ABD29932.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus NCTC
8325]
gi|150373762|dbj|BAF67022.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus str.
Newman]
gi|160367861|gb|ABX28832.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253729243|gb|EES97972.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|257272472|gb|EEV04595.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275763|gb|EEV07236.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 65-1322]
gi|257279398|gb|EEV09999.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 68-397]
gi|257282317|gb|EEV12452.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284997|gb|EEV15116.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M876]
gi|257846492|gb|EEV70515.1| SsrA-binding protein [Staphylococcus aureus A9635]
gi|257860386|gb|EEV83218.1| tmRNA-binding protein [Staphylococcus aureus A5948]
gi|259159404|gb|EEW44457.1| SsrA-binding protein [Staphylococcus aureus 930918-3]
gi|259161843|gb|EEW46428.1| SsrA-binding protein [Staphylococcus aureus D30]
gi|269940358|emb|CBI48735.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TW20]
gi|282314410|gb|EFB44800.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C101]
gi|282317710|gb|EFB48082.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C427]
gi|282320073|gb|EFB50420.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus D139]
gi|282322657|gb|EFB52979.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M899]
gi|282325821|gb|EFB56129.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus WBG10049]
gi|282327837|gb|EFB58119.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331599|gb|EFB61111.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Btn1260]
gi|282593738|gb|EFB98730.1| SsrA-binding protein [Staphylococcus aureus A9765]
gi|282596368|gb|EFC01329.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C160]
gi|283460092|gb|EFC07182.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus H19]
gi|283470076|emb|CAQ49287.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ST398]
gi|283791066|gb|EFC29881.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290921165|gb|EFD98226.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095672|gb|EFE25933.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 58-424]
gi|291467713|gb|EFF10228.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M809]
gi|294822648|gb|EFG39088.1| SsrA-binding protein [Staphylococcus aureus A9754]
gi|295128749|gb|EFG58380.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16]
gi|296886745|gb|EFH25649.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297576582|gb|EFH95297.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MN8]
gi|298694117|gb|ADI97339.1| tmRNA and SsrA-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300886828|gb|EFK82030.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH70]
gi|302332492|gb|ADL22685.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus
JKD6159]
gi|302750678|gb|ADL64855.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus
str. JKD6008]
gi|304339958|gb|EFM05902.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312438788|gb|ADQ77859.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH60]
gi|315194402|gb|EFU24794.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus CGS00]
gi|315196260|gb|EFU26614.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus CGS01]
gi|320139882|gb|EFW31743.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|320142027|gb|EFW33855.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|323438638|gb|EGA96382.1| SsrA-binding protein [Staphylococcus aureus O11]
gi|323441963|gb|EGA99600.1| SsrA-binding protein [Staphylococcus aureus O46]
gi|329313502|gb|AEB87915.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus T0131]
gi|329723804|gb|EGG60332.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 21189]
Length = 154
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +N E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N +I Y + NRFNH P R+RKLLL KREI +L R G ++VP+K+Y G
Sbjct: 59 MYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLK-HGH 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKAR 153
>gi|254448777|ref|ZP_05062234.1| SsrA-binding protein [gamma proteobacterium HTCC5015]
gi|198261618|gb|EDY85906.1| SsrA-binding protein [gamma proteobacterium HTCC5015]
Length = 145
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY-L 74
N+KAR++Y I ++ EAG+VL G EVKSLR K + DS+ + E +L ++I
Sbjct: 2 QNKKARHDYSIEQNIEAGLVLEGWEVKSLRAGKAQLVDSHVIIKQGEAYLIGAHITPLPT 61
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ N P R RKLLL RE+ L +V R G TLV + +Y+ KG K+DL LA+GKK
Sbjct: 62 ASTHVNTDPTRIRKLLLHNRELAHLIGSVDRKGYTLVALAMYWK-KGKIKLDLGLAKGKK 120
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR ++K+RDW R+K R+L+ +
Sbjct: 121 LHDKRASDKQRDWQREKARLLKNN 144
>gi|171780154|ref|ZP_02921058.1| hypothetical protein STRINF_01942 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281502|gb|EDT46937.1| hypothetical protein STRINF_01942 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 155
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI +L ++ GMTL+P+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQEPERTRKLLLKKREIEKLSNDLKGTGMTLIPLKVYLK-NGFAKVLLGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRET K+R+ DR R ++ N
Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153
>gi|119961982|ref|YP_948369.1| SsrA-binding protein [Arthrobacter aurescens TC1]
gi|166222355|sp|A1R807|SSRP_ARTAT RecName: Full=SsrA-binding protein
gi|119948841|gb|ABM07752.1| SsrA-binding protein [Arthrobacter aurescens TC1]
Length = 156
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/144 (46%), Positives = 101/144 (70%), Gaps = 1/144 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KVV+ NRKAR+NYH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+
Sbjct: 3 KESGRKVVATNRKARHNYHVMDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWME 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+IPEY Q + NH RR RKLLL + E+ ++ +R G T+VP+++YF G AK++
Sbjct: 63 GIHIPEYHQGSWTNHAARRRRKLLLHRDELDKISQKIRESGFTVVPLQLYFLD-GRAKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQ 150
+A+A+GKK+YDKR+T +++ R+
Sbjct: 122 IAIARGKKDYDKRQTLREQQDKRE 145
>gi|238019173|ref|ZP_04599599.1| hypothetical protein VEIDISOL_01036 [Veillonella dispar ATCC 17748]
gi|294791940|ref|ZP_06757088.1| SsrA-binding protein [Veillonella sp. 6_1_27]
gi|237863872|gb|EEP65162.1| hypothetical protein VEIDISOL_01036 [Veillonella dispar ATCC 17748]
gi|294457170|gb|EFG25532.1| SsrA-binding protein [Veillonella sp. 6_1_27]
Length = 156
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ +S + +++DNRKAR++++I ++EAGI LTGTE+KS+R K+N+ DS+ +
Sbjct: 1 MAKQSSPS----LIADNRKARHDFNIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+
Sbjct: 57 GELLLYGVHISPYEQGNRFNHEPERTRKLLMHKSEINKLHAQVKEKGFSLVPLNFHFS-H 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ + L GKK YDKR+ +RD R + L+E
Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRLKE 152
>gi|330447341|ref|ZP_08310990.1| ssrA-binding protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491532|dbj|GAA05487.1| ssrA-binding protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 160
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N+ AR+ + I +EAG+ L G EVK++R KVN+++SY N
Sbjct: 1 MAKKPNKKPGSNTIAKNKTARFEFAINDEYEAGMQLQGWEVKAIRDGKVNMTESYVFLRN 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +++ I + P R RKLLL++REI +L AV RDG T++ + +Y+ A
Sbjct: 61 GEAFISGLTITPLNAASTHVVADPTRTRKLLLNRREIDKLAGAVNRDGETIIALNMYWKA 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
KI + A+GKK +DKR K +DW R K RIL+ N
Sbjct: 121 S-FVKIKIGTARGKKLHDKRADSKAKDWQRDKARILKSSN 159
>gi|222150779|ref|YP_002559932.1| ssrA-binding protein [Macrococcus caseolyticus JCSC5402]
gi|254778366|sp|B9EAH5|SSRP_MACCJ RecName: Full=SsrA-binding protein
gi|222119901|dbj|BAH17236.1| ssrA-binding protein [Macrococcus caseolyticus JCSC5402]
Length = 153
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ NRKA ++Y I + EAGI L GTE+KS+R N+ DSYA E+++ N +I
Sbjct: 7 KVLAQNRKASHDYIIEETIEAGIELKGTEIKSIRRGSANLRDSYARVYKGEVFVYNMHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + NRFNH P R RKLLL +++I +L+ R G TLVP+K+Y G K+ + +A+
Sbjct: 67 PYEEGNRFNHDPLRTRKLLLKRKQIDKLFGQTREQGYTLVPLKLYIK-NGYCKMLIGVAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK+YDKR K ++ R+ R ++E
Sbjct: 126 GKKDYDKRHALKAKEAKREMDRAMKER 152
>gi|325270985|ref|ZP_08137572.1| SsrA-binding protein [Prevotella multiformis DSM 16608]
gi|324986782|gb|EGC18778.1| SsrA-binding protein [Prevotella multiformis DSM 16608]
Length = 159
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 3/159 (1%)
Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+ +K V N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+ T
Sbjct: 1 MNKEQQERRKKSPVQIRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCTIS 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH RR RKLLL++REI L A + G T++P I+ +
Sbjct: 61 RGEMWVQGMNISPYFYGSYANHEARRPRKLLLTRREIRNLEAESKTPGYTIIPTLIFIDE 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK YDKR+T K+++ R+ R + +
Sbjct: 121 HGRAKVDIALAKGKKEYDKRQTLKEKEDRREMDRARKHY 159
>gi|163814015|ref|ZP_02205408.1| hypothetical protein COPEUT_00168 [Coprococcus eutactus ATCC 27759]
gi|158450709|gb|EDP27704.1| hypothetical protein COPEUT_00168 [Coprococcus eutactus ATCC 27759]
Length = 156
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
++++N+KA + Y I FEAGI L GTEVKS+R +I +++ ++ E+++
Sbjct: 2 SKERGNTLIANNKKAYHEYFIEEKFEAGIELVGTEVKSIRQGHCSIKEAFVGIDHGEVYV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ Y + N FN P R RKLLL + EI++L + G T++P+K+Y GL K+
Sbjct: 62 YRMNVNPYERGNIFNKDPLRTRKLLLHRYEINKLIGQQKVKGYTIMPLKVYIKD-GLVKM 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ LA+GKK YDKRE K+D R+ R L+ N
Sbjct: 121 EIGLAKGKKLYDKREDIAKKDMKREMERDLKNRN 154
>gi|313904162|ref|ZP_07837541.1| SsrA-binding protein [Eubacterium cellulosolvens 6]
gi|313470964|gb|EFR66287.1| SsrA-binding protein [Eubacterium cellulosolvens 6]
Length = 156
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KVV++N+KA ++Y I +E GI L GTEVKS+R+ K +I +S+ ++ EI++
Sbjct: 3 KERGVKVVANNKKAYHDYFIDEKYECGIELHGTEVKSIRMGKCSIKESFVRIQDGEIYIY 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R +KLL+ K+EI L + + G TLVP+++YF K+
Sbjct: 63 GMHISPYEKGNIFNRDPLRPKKLLMHKKEIRTLAGKIAQKGFTLVPVEVYFKDS-RIKVQ 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR +K+D R+ R + N
Sbjct: 122 IGLARGKKLYDKRADIQKKDIRREAERNFKVKN 154
>gi|189346071|ref|YP_001942600.1| SsrA-binding protein [Chlorobium limicola DSM 245]
gi|189340218|gb|ACD89621.1| SsrA-binding protein [Chlorobium limicola DSM 245]
Length = 157
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + NRKAR+ +HI+ S AGI L G+EVKS+R+ K ++++S+A +
Sbjct: 1 MAKKQEKPQYIRSI-QNRKARFEFHILDSVVAGIELLGSEVKSVRLGKASLNESFAIIHH 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N I Y +R+R+LLL + EI +L +R G+TL+P+K +F +
Sbjct: 60 GEVWLENMQITPYEHNTLDKLEAKRSRRLLLHRDEIRKLQTKIREKGLTLIPLKAFFTDR 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ KI++ALA+GKK YDKRET K RD +RQ +I + +
Sbjct: 120 GILKIEIALAKGKKLYDKRETIKARDTERQMQQIKKSY 157
>gi|320527586|ref|ZP_08028764.1| SsrA-binding protein [Solobacterium moorei F0204]
gi|320132032|gb|EFW24584.1| SsrA-binding protein [Solobacterium moorei F0204]
Length = 153
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+K V+ NR+A ++Y + FE GIVLTGTE+KS+R K+ DSY + E W+
Sbjct: 4 KTHEKTVALNRRASHDYFLEEKFECGIVLTGTEIKSVRQGKIQFQDSYISIYRGEAWIKG 63
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y N FN R+RKLLL K EI RL+ V+ G TL+P+++Y G AK+++
Sbjct: 64 MHISPYKYGNIFNVDETRDRKLLLHKLEIFRLHQKVKLKGYTLIPVRMYLKD-GRAKLEI 122
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILR 156
ALA+GK YDKRETEK RD R + L+
Sbjct: 123 ALAKGKDLYDKRETEKLRDAKRAMEKALK 151
>gi|149190065|ref|ZP_01868342.1| SsrA-binding protein [Vibrio shilonii AK1]
gi|148836095|gb|EDL53055.1| SsrA-binding protein [Vibrio shilonii AK1]
Length = 161
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M K S+ ++ N+K R+ YHI E+GI L G EVKSLR K NI++SY
Sbjct: 1 MVKKNSKKKAGSNTIAQNKKVRHEYHIEDEIESGIELQGWEVKSLRQGKANIAESYVYIR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ + +++ I Q + P R RKLL+ +RE+ +L V RDGMTLV +Y++
Sbjct: 61 DGQAYISGMSIIPLNQASTHIVAEPTRVRKLLMHRRELDKLIGLVNRDGMTLVATALYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ AK+ + +A+GKK +DKR K++DW R K RI++ +
Sbjct: 121 -RSWAKLKVGVAKGKKLHDKRADLKEKDWARDKARIMKSN 159
>gi|323142185|ref|ZP_08077020.1| SsrA-binding protein [Phascolarctobacterium sp. YIT 12067]
gi|322413336|gb|EFY04220.1| SsrA-binding protein [Phascolarctobacterium sp. YIT 12067]
Length = 155
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 2/149 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNSYI 70
K++++NRKAR+++ I +FEAGI LTGTEVKSLR K N+ DSYA E+++ N +I
Sbjct: 7 KIIAENRKARHDFTIYETFEAGIALTGTEVKSLRAGKANMKDSYAQVTRQAEVFVYNLHI 66
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N FNH P R+R+LLL + EI++L V+ G LVP+K+YF GL K++LALA
Sbjct: 67 SPYDHGNIFNHDPLRSRRLLLHRAEINKLIGKVKEKGYALVPLKLYFK-HGLVKMELALA 125
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKR+ KRD R+ R L++ N
Sbjct: 126 VGKKLYDKRQDMAKRDAKREMERALKDRN 154
>gi|293376199|ref|ZP_06622444.1| SsrA-binding protein [Turicibacter sanguinis PC909]
gi|292645186|gb|EFF63251.1| SsrA-binding protein [Turicibacter sanguinis PC909]
Length = 155
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA ++Y I +FEAGIVL GTE+KS+R KVN+ DS+ + +E ++ N +I
Sbjct: 8 TLAQNKKAGHDYFIEETFEAGIVLQGTEIKSIRAGKVNLRDSFVRIDRNEAFVHNMHISH 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y Q NRFNH P R RKLLL KREI +L + G +L+P+K+Y G AK+ +A+G
Sbjct: 68 YEQGNRFNHDPLRTRKLLLHKREIAKLIGTQKMGGYSLIPLKLYIKD-GYAKLLFGIAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KKNYDKR+ K +D +RQ + L++
Sbjct: 127 KKNYDKRQDLKAKDANRQIEKALKDR 152
>gi|270158190|ref|ZP_06186847.1| SsrA-binding protein [Legionella longbeachae D-4968]
gi|289163552|ref|YP_003453690.1| trans-translation protein [Legionella longbeachae NSW150]
gi|269990215|gb|EEZ96469.1| SsrA-binding protein [Legionella longbeachae D-4968]
gi|288856725|emb|CBJ10536.1| trans-translation protein [Legionella longbeachae NSW150]
Length = 158
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + + NRKA ++Y I +EAG+VL G EVKSLR K+N+SDS+ +N
Sbjct: 1 MTNKKQSDS---TIVFNRKASFDYFIEEQYEAGLVLEGWEVKSLRAGKINLSDSHVIIKN 57
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+++E+++L +V R G T+VP+ +Y+
Sbjct: 58 SEAFLLGAQIQPLITASTHTIPDPIRTRKLLLNRKELNQLIGSVERQGYTIVPLSLYWKK 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ ALA+GKK +DKR+T K R+W R + RI+++
Sbjct: 118 NKIKIKI-ALAKGKKEHDKRDTIKDREWQRDRSRIMKK 154
>gi|220932408|ref|YP_002509316.1| SsrA-binding protein [Halothermothrix orenii H 168]
gi|254778364|sp|B8CYF2|SSRP_HALOH RecName: Full=SsrA-binding protein
gi|219993718|gb|ACL70321.1| SsrA-binding protein [Halothermothrix orenii H 168]
Length = 155
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G KV++ N+KAR+++ I ++E+GI+L GTE+KS+R +VN+ DS+A EN E++L
Sbjct: 2 GQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFLY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y Q NR+NH P R RKLLL K EI +L ++ G +LVP+ IY LAKI+
Sbjct: 62 NMHISPYKQGNRYNHDPGRKRKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLK-NNLAKIE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LALA+GKK YDKR+ K+ +R+ R +E
Sbjct: 121 LALAKGKKKYDKRQEIAKKTAEREIRRAFKER 152
>gi|87120239|ref|ZP_01076134.1| SmpB protein [Marinomonas sp. MED121]
gi|86164342|gb|EAQ65612.1| SmpB protein [Marinomonas sp. MED121]
Length = 160
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS + + ++ N++AR++Y I + FEAGI LTG EVKSLR K + DS+ N
Sbjct: 1 MSKAKKKSNTSGTIALNKRARHDYFIEQKFEAGICLTGWEVKSLRAGKAQLVDSHVFLRN 60
Query: 61 DEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL N P + P R+RKLLL+K+EI +L + G V +Y+
Sbjct: 61 GEAWLLNTLITPLMTASTHVVCEPTRDRKLLLNKKEIDKLIQVTEQKGKACVATALYWKG 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALA GKK+ DKR+T + RDW R K R+++
Sbjct: 121 NH-IKVEIALATGKKDIDKRDTTRDRDWARDKERMMKH 157
>gi|116492267|ref|YP_804002.1| SsrA-binding protein [Pediococcus pentosaceus ATCC 25745]
gi|122266269|sp|Q03GW2|SSRP_PEDPA RecName: Full=SsrA-binding protein
gi|116102417|gb|ABJ67560.1| SsrA-binding protein [Pediococcus pentosaceus ATCC 25745]
Length = 155
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + K ++ N+KAR++Y I+ + EAG+VLTGTE+KS+R +V + D Y + E
Sbjct: 1 MAKKPKSNDKALAQNKKARHDYSILSTMEAGMVLTGTEIKSIRDRRVTLRDGYVQIRHGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
L N I EYLQ N+FNH P RNRKLLL K+EI +L + G+T+VP+K+Y G
Sbjct: 61 AILMNVQINEYLQGNQFNHDPFRNRKLLLHKKEILKLQEETKNKGITIVPLKMYLK-NGF 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + +A+GK YDKRE+ KKRD R+ R L+
Sbjct: 120 AKVLIGVAKGKHEYDKRESLKKRDQQREIDRALKNR 155
>gi|326803683|ref|YP_004321501.1| SsrA-binding protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651101|gb|AEA01284.1| SsrA-binding protein [Aerococcus urinae ACS-120-V-Col10a]
Length = 154
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + N VV+ NRKA ++Y I + EAG+VLTGTE+KS+R KVN+ DS+A EN
Sbjct: 1 MTKKKQDN----VVATNRKANHDYIIEDTIEAGLVLTGTEIKSIRKGKVNLKDSFARVEN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
++W+ ++ + Q NRFN P R RKLLL KREI+RL V ++G ++P+++Y +
Sbjct: 57 GQVWVYGMHVSPFEQGNRFNPDPMRPRKLLLKKREINRLAKHVSQEGYAIIPLRMYIK-R 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + + +GKK YDKR+ K++D R R ++E
Sbjct: 116 GFAKLLIGIGKGKKKYDKRQALKEKDMKRDIKRAMKEK 153
>gi|325838921|ref|ZP_08166727.1| SsrA-binding protein [Turicibacter sp. HGF1]
gi|325490662|gb|EGC92973.1| SsrA-binding protein [Turicibacter sp. HGF1]
Length = 154
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/146 (45%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA ++Y I +FEAGIVL GTE+KS+R KVN+ DS+ + +E ++ N +I
Sbjct: 8 TLAQNKKAGHDYFIEETFEAGIVLQGTEIKSIRAGKVNLRDSFVRIDRNEAFVHNMHISH 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y Q NRFNH P R RKLLL KREI +L + G +L+P+K+Y G AK+ +A+G
Sbjct: 68 YEQGNRFNHDPLRTRKLLLHKREIAKLIGTQKMGGYSLIPLKLYIKD-GYAKLLFGIAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KKNYDKR+ K +D +RQ + L++
Sbjct: 127 KKNYDKRQDLKAKDANRQIEKALKDR 152
>gi|157827270|ref|YP_001496334.1| SsrA-binding protein [Rickettsia bellii OSU 85-389]
gi|187629782|sp|A8GWS0|SSRP_RICB8 RecName: Full=SsrA-binding protein
gi|157802574|gb|ABV79297.1| SsrA-binding protein [Rickettsia bellii OSU 85-389]
Length = 151
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 104/148 (70%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A +E++L N +I
Sbjct: 4 KKIIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGNEVFLYNCHI 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL K+EI+++ + G TLV + +YFN K KI+L +A
Sbjct: 64 AEYEKANRFNHSTRRPRKLLLHKKEINKIIGRTKIKGYTLVALSMYFNKKNKIKIELGIA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 124 KGKKLHDKRESIKEKDWKRDQSRLIRQK 151
>gi|303233078|ref|ZP_07319753.1| SsrA-binding protein [Atopobium vaginae PB189-T1-4]
gi|302480853|gb|EFL43938.1| SsrA-binding protein [Atopobium vaginae PB189-T1-4]
Length = 174
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 88/154 (57%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S ++++ NR AR+ Y I ++EAGI L G EVKSLR I+D++ E++
Sbjct: 17 SNRASAARLIAQNRTARHEYDIDTTWEAGIELVGCEVKSLRERACQITDTFCIVRKRELF 76
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L +IP Y +N R RKLL+ +++I + ++ G+ LVP+KIYF+ K
Sbjct: 77 LVGLHIPPYSHGGVWNIDADRRRKLLMHRKQITTIERKLQVKGIALVPLKIYFDEHSRVK 136
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ + L +GKK YDKR + KRD DR+ R L+E
Sbjct: 137 VQVGLGRGKKLYDKRASAAKRDSDREIARALKER 170
>gi|269218741|ref|ZP_06162595.1| SsrA-binding protein [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211852|gb|EEZ78192.1| SsrA-binding protein [Actinomyces sp. oral taxon 848 str. F0332]
Length = 217
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 13/159 (8%)
Query: 2 SLKSRGNPPKK-----------VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVN 50
+ K G P V++ N+KAR+ Y I+ ++EAG+ LTGTEVK+LR+ + +
Sbjct: 44 AKKKDGKPTAAQKAKAQADAKQVIARNKKARHEYSILDTYEAGMSLTGTEVKALRLGRAS 103
Query: 51 ISDSYATFEND-EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMT 109
+ D++ + E WL + IP Y NH P R RKLLL K+EI +L V+ G+T
Sbjct: 104 LVDAWVEIDRYGEAWLHGANIPVYAMGTWTNHAPTRKRKLLLHKQEIGKLMQKVQSKGLT 163
Query: 110 LVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWD 148
+VP+++YF +G AK+++ALA+GK+ +DKRET ++RD D
Sbjct: 164 IVPLELYF-LRGRAKVEIALAEGKQEWDKRETIRRRDAD 201
>gi|229817220|ref|ZP_04447502.1| hypothetical protein BIFANG_02480 [Bifidobacterium angulatum DSM
20098]
gi|229785009|gb|EEP21123.1| hypothetical protein BIFANG_02480 [Bifidobacterium angulatum DSM
20098]
Length = 159
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 6/160 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59
M+ K+++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++++
Sbjct: 1 MAK----EQGTKLIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAEAFVSIDR 56
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+WL N+ IPEYL NH P+R RKLLL +REI +L G T++P+ +YF
Sbjct: 57 RGEMWLENANIPEYLNGTWNNHAPKRKRKLLLHEREIIKLSRQSEAKGYTIIPLSLYFKD 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G K ++ALA+GK+ +DKR+ ++ R+ R +R N
Sbjct: 117 -GRVKAEIALARGKREFDKRQALREEQDKREALRAMRYAN 155
>gi|225024233|ref|ZP_03713425.1| hypothetical protein EIKCOROL_01105 [Eikenella corrodens ATCC
23834]
gi|224943258|gb|EEG24467.1| hypothetical protein EIKCOROL_01105 [Eikenella corrodens ATCC
23834]
Length = 147
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA ++Y I EAG+VL G EVK++R +V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDYFIEDQLEAGLVLDGWEVKAVRAGRVQLKESYIHWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI++L V R G TLVP+ +++ +G K+D+ LA+G
Sbjct: 63 PTASTHVKPDPVRQRKLLLKQSEINKLIGKVERSGYTLVPLNLHYR-RGYIKMDIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR++ K+ DW R+K R+L+
Sbjct: 122 KKQHDKRQSMKEADWKREKQRLLKNR 147
>gi|239996745|ref|ZP_04717269.1| SsrA-binding protein [Alteromonas macleodii ATCC 27126]
Length = 159
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M ++ N+KAR++Y + FEAG+ L G E+KS+R KVNI+D+Y +N
Sbjct: 1 MKKNKANKNTTGNIAQNKKARHDYFLEDKFEAGLELQGWEIKSIRAGKVNITDAYIIIQN 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L I Q + P R RKLLL+KREI RL A R G ++V +Y+
Sbjct: 61 AEAYLVGCRISPLNQASTHVIAAPERARKLLLNKREIDRLMGARDRQGYSIVATSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K K+++ LA+GK +DKR+T K +DW RQK R+++
Sbjct: 120 KCWVKLEIHLAKGKHAHDKRDTIKDKDWQRQKERMMKH 157
>gi|145589607|ref|YP_001156204.1| SsrA-binding protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|189046836|sp|A4SYS6|SSRP_POLSQ RecName: Full=SsrA-binding protein
gi|145048013|gb|ABP34640.1| SsrA-binding protein [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 150
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72
+ DN+KA ++Y I FEAG+VL G EVK++R +V++ ++Y E++L +I P
Sbjct: 3 IVDNKKAFFDYFIEERFEAGLVLEGWEVKAIRAGRVHVKEAYVVIRKAELFLIGCHITPL 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL+ EI +L V + G TLVP+ ++F KG K ++ LA+G
Sbjct: 63 LSASTHIVPDSTRTRKLLLNAIEIRKLIGKVEQKGYTLVPLNLHFT-KGNVKCEIGLARG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKR K+R+W+ QK RI R
Sbjct: 122 KKQHDKRAATKEREWEVQKGRIAR 145
>gi|90022386|ref|YP_528213.1| SsrA-binding protein [Saccharophagus degradans 2-40]
gi|89951986|gb|ABD82001.1| SsrA-binding protein [Saccharophagus degradans 2-40]
Length = 162
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS + P ++ N++AR++Y + FEAG+ L G EVK+LR + +++SY +
Sbjct: 4 MSKANKKKKPQSSTIAQNKRARHDYFLETKFEAGVALLGWEVKALRAQRGQMTESYVLVQ 63
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E WL + I Q + P R RKLLL++RE++++ A + G T+V +Y+
Sbjct: 64 NGEAWLQGAQIQPLPQACTHYVTEPARPRKLLLNRRELNKIAEAKDQKGYTIVATSLYWK 123
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
A + K ++A+A+GK+ +DKR+TEK+R+W+ QK R+L
Sbjct: 124 AH-MVKCEIAIAKGKQLHDKRQTEKEREWNIQKQRVL 159
>gi|91205554|ref|YP_537909.1| SsrA-binding protein [Rickettsia bellii RML369-C]
gi|122425608|sp|Q1RIJ4|SSRP_RICBR RecName: Full=SsrA-binding protein
gi|91069098|gb|ABE04820.1| tmRNA-binding protein [Rickettsia bellii RML369-C]
Length = 152
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 104/148 (70%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A +E++L N +I
Sbjct: 5 KKIIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGNEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL K+EI+++ + G TLV + +YFN K KI+L +A
Sbjct: 65 AEYEKANRFNHSTRRPRKLLLHKKEINKIIGRTKIKGYTLVALSMYFNKKNKIKIELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|121604906|ref|YP_982235.1| SsrA-binding protein [Polaromonas naphthalenivorans CJ2]
gi|120593875|gb|ABM37314.1| SsrA-binding protein [Polaromonas naphthalenivorans CJ2]
Length = 185
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY-L 74
DN+KA +NYHI FEAG+VL G EVKS+R KV ++D Y N E+++ I
Sbjct: 41 DNKKATFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRNGELFIIGCQINPLGT 100
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ R +KLL+ K EI RL + + G TLVP+ +++ A G K ++ LA+GK
Sbjct: 101 ASTHIRPDSVRTKKLLMHKDEIRRLIGKIDQKGFTLVPLNMHWKA-GKVKCEIGLAKGKA 159
Query: 135 NYDKRETEKKRDWDRQKHRILREHN 159
+DKR+T K R+ R+ R ++ N
Sbjct: 160 EHDKRDTIKDREGKREVDRAMKSRN 184
>gi|322387714|ref|ZP_08061323.1| SsrA-binding protein [Streptococcus infantis ATCC 700779]
gi|322391818|ref|ZP_08065283.1| SsrA-binding protein [Streptococcus peroris ATCC 700780]
gi|321141581|gb|EFX37077.1| SsrA-binding protein [Streptococcus infantis ATCC 700779]
gi|321145298|gb|EFX40694.1| SsrA-binding protein [Streptococcus peroris ATCC 700780]
Length = 155
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R+++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIARVMKAVN 153
>gi|258543893|ref|ZP_05704127.1| SsrA-binding protein [Cardiobacterium hominis ATCC 15826]
gi|258520832|gb|EEV89691.1| SsrA-binding protein [Cardiobacterium hominis ATCC 15826]
Length = 156
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS KS+ + NRKA ++Y + FEAGI L G EVK+LR ++ I +S+ ++
Sbjct: 1 MSKKSKEQDNN--IITNRKAFHDYFLEEHFEAGIALEGWEVKALRAGRIQIKESHILVKS 58
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L +YI + P R RKLLL + EI +L A RDG TLVP+ +Y+
Sbjct: 59 GEVFLFGAYITPLPSASTHVIADPSRTRKLLLHRNEISKLIGAAERDGYTLVPVNLYWK- 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LA+A+GKK +DKR +EK RDW RQK R+++ H
Sbjct: 118 NGYVKVNLAIAKGKKAFDKRASEKDRDWARQKERLMKIH 156
>gi|332184251|gb|AEE26505.1| tmRNA-binding protein SmpB [Francisella cf. novicida 3523]
Length = 157
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ + E W
Sbjct: 2 SKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKYGEAW 61
Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N P + RKLLL++REI ++ + + G T VP+ +Y+
Sbjct: 62 LFNCLITPLLSASTHVVADAAATRKLLLNRREIDKIMGRIEQKGFTCVPLAMYWKGP-RV 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI++ALAQGKK +DKR+ +K +DW R+K R+ ++
Sbjct: 121 KIEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 154
>gi|217076594|ref|YP_002334310.1| SsrA-binding protein [Thermosipho africanus TCF52B]
gi|226734260|sp|B7IFV5|SSRP_THEAB RecName: Full=SsrA-binding protein
gi|217036447|gb|ACJ74969.1| SsrA-binding protein [Thermosipho africanus TCF52B]
Length = 149
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 72/147 (48%), Positives = 105/147 (71%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA +Y+I+ ++EAGI L GTEVK+LR S N DS+ +N E++L N IP
Sbjct: 2 KVIATNKKAYSDYNILETYEAGIELRGTEVKALRESGANFKDSFCRIKNGEVFLLNLNIP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y N NH P R R+LLL K+EIHRL V+ G+T++P KIYFN++GL K+++A+A+
Sbjct: 62 QYRNGNLNNHDPERPRRLLLHKKEIHRLIGKVKEQGLTIIPTKIYFNSRGLVKVEIAVAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE KKR+ +R+ + L+ +
Sbjct: 122 GKKKYDKREDIKKREINRKINEYLKRN 148
>gi|51473618|ref|YP_067375.1| SsrA-binding protein [Rickettsia typhi str. Wilmington]
gi|30173367|sp|Q9AKE3|SSRP_RICTY RecName: Full=SsrA-binding protein
gi|13235357|emb|CAC33723.1| Small protein [Rickettsia typhi]
gi|51459930|gb|AAU03893.1| tmRNA-binding protein SmpB [Rickettsia typhi str. Wilmington]
Length = 152
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 101/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +SYA+ E++L N +I
Sbjct: 5 KKVIAQNKKAIFNYFIEEILEAGIVLKGSEVQSLRQGKASIDESYASDNGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K++L +A
Sbjct: 65 TEYEKANRFNHSTRRPRKLLLHTKEIKKIIGKIRIKGYTLVALSMYFNKNNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR T K++DW + + R++R+
Sbjct: 125 KGKKLYDKRATIKEKDWKKDQSRLIRQK 152
>gi|319943800|ref|ZP_08018081.1| SsrA-binding protein [Lautropia mirabilis ATCC 51599]
gi|319743033|gb|EFV95439.1| SsrA-binding protein [Lautropia mirabilis ATCC 51599]
Length = 150
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++NRKA +NY I EAG+ L G EVK++R +V I ++Y EI+L ++I
Sbjct: 3 TITENRKAGFNYFIEERIEAGLALEGWEVKAIRAGRVQIQEAYVIVRRAEIFLIGAHITP 62
Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ RNRKLLL EI RL V R G +LVP+ +++ +G K+ L LA+
Sbjct: 63 LITASTHVKPDVTRNRKLLLHAAEIARLIGKVERAGYSLVPLDLHYT-RGRVKLALGLAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK +DKR TE+++DW R++ R+++ N
Sbjct: 122 GKKQFDKRATEREKDWQRERSRLMKNGN 149
>gi|332111606|gb|EGJ11588.1| SsrA-binding protein [Rubrivivax benzoatilyticus JA2]
Length = 155
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NR+AR+ YHI +EAGIVL+G E+K++R +V ++D Y + E++L I
Sbjct: 4 IAENRRARFEYHIEEQYEAGIVLSGWEIKAIRAGQVQLTDGYVLIRDGELFLIGCRINAL 63
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R +KLL+ K EI RL V + G TLVP+ +++ G K ++ALA+G
Sbjct: 64 RSASTHVLPEPDRTKKLLMKKDEIRRLVGKVEQKGFTLVPLNLHYKG-GRVKAEIALAKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K +DKR+TEKKRDW+R+K R++R
Sbjct: 123 KAQHDKRDTEKKRDWEREKGRLMRHK 148
>gi|326316675|ref|YP_004234347.1| SsrA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860]
gi|323373511|gb|ADX45780.1| SsrA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860]
Length = 157
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++DN+KA +NY EAG+VL G EVK+LR KV ++D Y
Sbjct: 1 MAKKPETLSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIRE 57
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L I + + R +KLLL K EI RL V + G TLVP+ +++
Sbjct: 58 GELYLIGCQINPLKTASTHVSPDAVRTKKLLLHKDEIKRLIGKVEQKGYTLVPLNLHWT- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK ++ALA+GK +DKR+T K+R+ R+ R ++
Sbjct: 117 NGRAKCEIALAKGKAEHDKRDTIKEREGKREVERAMKSR 155
>gi|254282406|ref|ZP_04957374.1| SsrA-binding protein [gamma proteobacterium NOR51-B]
gi|219678609|gb|EED34958.1| SsrA-binding protein [gamma proteobacterium NOR51-B]
Length = 161
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N++AR++YH++ +FEAG+ L G EVK+LR K ++DSY ++
Sbjct: 1 MAKAKKAKKFDNTIAQNKRARFDYHLLDTFEAGVSLAGWEVKALRAGKCQLTDSYVLMKD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL K+++ ++ AAV G T V +Y+
Sbjct: 61 GEAYLLGAQITPLDTISTHYVSDPTRTRKLLLHKKQLAQINAAVSAKGQTCVCTALYWKG 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K +ALAQGKK +DKR+TEK +DW+RQK RI+R +
Sbjct: 121 H-LVKAKIALAQGKKQHDKRDTEKAKDWERQKARIVRAN 158
>gi|270292900|ref|ZP_06199111.1| SsrA-binding protein [Streptococcus sp. M143]
gi|293365242|ref|ZP_06611959.1| SsrA-binding protein [Streptococcus oralis ATCC 35037]
gi|306825392|ref|ZP_07458732.1| SsrA-binding protein [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|306829350|ref|ZP_07462540.1| SsrA-binding protein [Streptococcus mitis ATCC 6249]
gi|307703782|ref|ZP_07640723.1| ssrA-binding protein [Streptococcus oralis ATCC 35037]
gi|322374463|ref|ZP_08048977.1| SsrA-binding protein [Streptococcus sp. C300]
gi|270278879|gb|EFA24725.1| SsrA-binding protein [Streptococcus sp. M143]
gi|291316692|gb|EFE57128.1| SsrA-binding protein [Streptococcus oralis ATCC 35037]
gi|304428436|gb|EFM31526.1| SsrA-binding protein [Streptococcus mitis ATCC 6249]
gi|304432330|gb|EFM35306.1| SsrA-binding protein [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|307622617|gb|EFO01613.1| ssrA-binding protein [Streptococcus oralis ATCC 35037]
gi|321279963|gb|EFX57002.1| SsrA-binding protein [Streptococcus sp. C300]
Length = 155
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|91788301|ref|YP_549253.1| SsrA-binding protein [Polaromonas sp. JS666]
gi|122967789|sp|Q12AT7|SSRP_POLSJ RecName: Full=SsrA-binding protein
gi|91697526|gb|ABE44355.1| SsrA-binding protein [Polaromonas sp. JS666]
Length = 149
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++DN+KA +NYHI FEAG+VL G EVKS+R KV ++D Y E+++ I
Sbjct: 3 IADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R +KLL+ K EI RL V + G TLVP+ +++ A G K ++ LA+G
Sbjct: 63 GTASTHVRPDSVRTKKLLMHKDEIRRLVGKVEQKGFTLVPLNMHWKA-GKVKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K +DKR+T K R+ R+ R ++ +
Sbjct: 122 KGEHDKRDTIKDREGKREVERAMKSRS 148
>gi|225858769|ref|YP_002740279.1| SsrA-binding protein [Streptococcus pneumoniae 70585]
gi|254778381|sp|C1C6V3|SSRP_STRP7 RecName: Full=SsrA-binding protein
gi|225720476|gb|ACO16330.1| SsrA-binding protein [Streptococcus pneumoniae 70585]
Length = 155
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I
Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+
Sbjct: 67 PYEEGNIWNQEPERRRKLLLYKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153
>gi|114797634|ref|YP_761478.1| SsrA-binding protein [Hyphomonas neptunium ATCC 15444]
gi|123322958|sp|Q0BYG5|SSRP_HYPNA RecName: Full=SsrA-binding protein
gi|114737808|gb|ABI75933.1| SsrA-binding protein [Hyphomonas neptunium ATCC 15444]
Length = 161
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 108/159 (67%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKV---VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ K + V++NR++R Y + + EAGI+L G+EVKSLR + NI++SYA+
Sbjct: 1 MATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYAS 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
E E+WL N+ I Y ANRFNH PRR RKLL+S+RE+ +L V R G T+VP+K+YF
Sbjct: 61 VEQGELWLINAEIQTYGGANRFNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
N KG AK+ + +A G+K +DKRE E KRDW R K RI++
Sbjct: 121 NDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMK 159
>gi|187631659|sp|Q21H28|SSRP_SACD2 RecName: Full=SsrA-binding protein
Length = 159
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 3/157 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS + P ++ N++AR++Y + FEAG+ L G EVK+LR + +++SY +
Sbjct: 1 MSKANKKKKPQSSTIAQNKRARHDYFLETKFEAGVALLGWEVKALRAQRGQMTESYVLVQ 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N E WL + I Q + P R RKLLL++RE++++ A + G T+V +Y+
Sbjct: 61 NGEAWLQGAQIQPLPQACTHYVTEPARPRKLLLNRRELNKIAEAKDQKGYTIVATSLYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
A + K ++A+A+GK+ +DKR+TEK+R+W+ QK R+L
Sbjct: 121 AH-MVKCEIAIAKGKQLHDKRQTEKEREWNIQKQRVL 156
>gi|116512575|ref|YP_811482.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris SK11]
gi|125624685|ref|YP_001033168.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris MG1363]
gi|123125410|sp|Q02XF3|SSRP_LACLS RecName: Full=SsrA-binding protein
gi|166223224|sp|A2RME2|SSRP_LACLM RecName: Full=SsrA-binding protein
gi|116108229|gb|ABJ73369.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris SK11]
gi|124493493|emb|CAL98471.1| SmpB protein [Lactococcus lactis subsp. cremoris MG1363]
gi|300071479|gb|ADJ60879.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris NZ9000]
Length = 155
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
N K ++ N+KAR++Y I +FEAGIVLTGTE+KS+R +K+ + D +A N E+WL+
Sbjct: 3 KNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLS 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I + Q N FN R RKLLL+K+EI ++ + G+T +P+K+Y G AK+
Sbjct: 63 NVHIAPFEQGNIFNVEELRTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLK-NGFAKVL 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK+YDKRE+ K+++ +R R L+ +N
Sbjct: 122 MGLARGKKDYDKRESLKRKEQNRDIARQLKAYN 154
>gi|225375099|ref|ZP_03752320.1| hypothetical protein ROSEINA2194_00723 [Roseburia inulinivorans DSM
16841]
gi|225213046|gb|EEG95400.1| hypothetical protein ROSEINA2194_00723 [Roseburia inulinivorans DSM
16841]
Length = 155
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA ++Y + +EAG+ L GTEVKSLR+ K +I +++ E
Sbjct: 1 MAKQE-----IKLIANNKKAHHDYFLEEKYEAGVELHGTEVKSLRMGKCSIKEAFVRIEK 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ + +I Y + N FN P R +KLL+ K EI +L + G TLVP+++YF
Sbjct: 56 GEVIIYGMHISPYEKGNIFNKDPLRPKKLLMHKSEIRKLVGKIAEQGYTLVPVEVYFKGS 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+ +ALA+GKK YDKR+ K+D R+ R + N
Sbjct: 116 -LVKVQIALAKGKKLYDKRQDIAKKDMRREAERDFKIRN 153
>gi|121610821|ref|YP_998628.1| SsrA-binding protein [Verminephrobacter eiseniae EF01-2]
gi|166223471|sp|A1WPQ3|SSRP_VEREI RecName: Full=SsrA-binding protein
gi|121555461|gb|ABM59610.1| SsrA-binding protein [Verminephrobacter eiseniae EF01-2]
Length = 157
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P + ++DN+KA ++Y + +EAG+VL G EVK+LR K ++D Y + E
Sbjct: 1 MTKKPDPASR-IADNKKAAHDYFLEERYEAGMVLHGWEVKALRAGKAQLTDGYVLIRDGE 59
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L + + + R +KLLL K +I RL V + G TLVP+ +++ G
Sbjct: 60 LFLLGCQLQALKTASTHVSPEAARTKKLLLKKDDIRRLIGKVEQKGYTLVPLNLHWK-NG 118
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ K ++ALA+GK +DKR + K+R+ R+ R L+ +
Sbjct: 119 VVKCEIALARGKAQHDKRNSIKEREGKREVERALKSRS 156
>gi|317501945|ref|ZP_07960129.1| SsrA-binding protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088239|ref|ZP_08337158.1| SsrA-binding protein [Lachnospiraceae bacterium 3_1_46FAA]
gi|316896625|gb|EFV18712.1| SsrA-binding protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408483|gb|EGG87949.1| SsrA-binding protein [Lachnospiraceae bacterium 3_1_46FAA]
Length = 154
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 100/152 (65%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+++++N+KA ++Y I+ +EAGIVL GTEVKSLR+ K +I +++ E+ E+++
Sbjct: 3 KSEVRMIANNKKAYHDYFILEKYEAGIVLHGTEVKSLRMGKCSIKEAFIRVESGEMYIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K+EI +++ ++ G+TLVP+++YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHKKEIDKMFGKMKEQGITLVPLQVYFKGS-LVKMEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+A+GKK YDKR+ K+D R+ R + N
Sbjct: 122 GVAKGKKLYDKRDDIAKKDQKREAQREFKIRN 153
>gi|289551357|ref|YP_003472261.1| tmRNA-binding protein SmpB [Staphylococcus lugdunensis HKU09-01]
gi|289180888|gb|ADC88133.1| tmRNA-binding protein SmpB [Staphylococcus lugdunensis HKU09-01]
Length = 154
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA ++ E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKHGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G
Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREVGYSIIPLKLYLK-HGH 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAMKRDVDRAMKAR 153
>gi|254294105|ref|YP_003060128.1| SsrA-binding protein [Hirschia baltica ATCC 49814]
gi|254042636|gb|ACT59431.1| SsrA-binding protein [Hirschia baltica ATCC 49814]
Length = 158
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + +V++NR++R NY +V + EAGI L GTEVKSLR+ + NIS+SYA E
Sbjct: 1 MAKKKKQDGGG-LVAENRQSRRNYEVVDTLEAGIALVGTEVKSLRLGRANISESYARDEQ 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ L N+ IP Y A+RFNH P R RKLLL K+E+ +L + RDGMT+VP+K+YFN +
Sbjct: 60 GELVLVNATIPIYPPASRFNHEPLRMRKLLLKKKELAKLMQGITRDGMTIVPLKLYFNER 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+AK+ L LA+G+KN+DKR+ EKKRDWD+QK R++R
Sbjct: 120 GIAKLLLGLAKGRKNHDKRDVEKKRDWDKQKARLMRAK 157
>gi|329116966|ref|ZP_08245683.1| SsrA-binding protein [Streptococcus parauberis NCFD 2020]
gi|326907371|gb|EGE54285.1| SsrA-binding protein [Streptococcus parauberis NCFD 2020]
Length = 155
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 104/148 (70%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N+E+WL N +I
Sbjct: 7 NLLAQNKKARHDYHIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKNNEVWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLL+ KREI L ++ GMTL+P+KIY G AK+ + LA+
Sbjct: 67 PFEQGNIWNSDPERTRKLLMKKREIQHLANELKGTGMTLIPLKIYLKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK ++DKRE+ K+R+ DR R+++ N
Sbjct: 126 GKHDFDKRESLKRREQDRDIKRVMKSVN 153
>gi|227874899|ref|ZP_03993052.1| tmRNA-binding protein [Mobiluncus mulieris ATCC 35243]
gi|269976497|ref|ZP_06183482.1| SsrA-binding protein [Mobiluncus mulieris 28-1]
gi|306818195|ref|ZP_07451926.1| SsrA-binding protein [Mobiluncus mulieris ATCC 35239]
gi|227844674|gb|EEJ54830.1| tmRNA-binding protein [Mobiluncus mulieris ATCC 35243]
gi|269935298|gb|EEZ91847.1| SsrA-binding protein [Mobiluncus mulieris 28-1]
gi|304649159|gb|EFM46453.1| SsrA-binding protein [Mobiluncus mulieris ATCC 35239]
Length = 180
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
N+KA ++Y + EAG+ LTGTEVK+LR+ + ++S+++ + E WL + IPEY
Sbjct: 34 RNKKAAHDYFLEDRLEAGLSLTGTEVKALRMGRASLSEAWVEIDRGEAWLQGANIPEYFY 93
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ NH P+R R+LLL KREI RL V G T+VP+++YF G AK+++ALA+GK+
Sbjct: 94 GSWTNHSPKRKRRLLLHKREILRLENGVAAKGYTVVPVELYFIG-GRAKVEIALARGKQE 152
Query: 136 YDKRETEKKRDWDRQKHRILREHN 159
+DKR+T ++R+ +R+ R LR+ N
Sbjct: 153 WDKRQTIREREDNREAQRALRDAN 176
>gi|297588328|ref|ZP_06946971.1| SsrA-binding protein [Finegoldia magna ATCC 53516]
gi|297573701|gb|EFH92422.1| SsrA-binding protein [Finegoldia magna ATCC 53516]
Length = 149
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K++++N+KAR+ Y I +E GI L GTEVKS++ KV+I +SY EN E+++ +
Sbjct: 2 SDIKLLANNKKARHEYFIEDVYECGIELKGTEVKSIKKGKVSIKESYCMIENSEVFVYSM 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I Y + N FN R RKLL+ K EI +L + G TL+P+++Y GL K+++A
Sbjct: 62 NISPYTEGNIFNVDSLRKRKLLMHKSEIRKLIGKTKEQGYTLIPLRVYEK-NGLVKVEIA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GK YDKRET KKRD R R +R
Sbjct: 121 LAKGKNLYDKRETLKKRDDLRNMQRAMRR 149
>gi|196019978|ref|XP_002119080.1| hypothetical protein TRIADDRAFT_63046 [Trichoplax adhaerens]
gi|190577046|gb|EDV18434.1| hypothetical protein TRIADDRAFT_63046 [Trichoplax adhaerens]
Length = 209
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 71/138 (51%), Positives = 98/138 (71%)
Query: 21 RYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFN 80
+ Y I EAGIVL G+EVKSLR SK +I++SYA ++EI++ + IPEY +A F
Sbjct: 72 YHEYLIEDKVEAGIVLKGSEVKSLRFSKASINESYANNIDNEIFILGANIPEYNKAKSFK 131
Query: 81 HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRE 140
H P+R RKLLL K+EI++L ++R G TL+P+ +YFN K +AKI L LA+GKK +DKRE
Sbjct: 132 HNPKRQRKLLLHKKEINKLIGLIKRKGYTLIPLTLYFNKKNIAKISLGLAKGKKKHDKRE 191
Query: 141 TEKKRDWDRQKHRILREH 158
K+RDW+R K RI + +
Sbjct: 192 AIKQRDWERDKARIFKNN 209
>gi|239627451|ref|ZP_04670482.1| SsrA-binding protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517597|gb|EEQ57463.1| SsrA-binding protein [Clostridiales bacterium 1_7_47FAA]
Length = 155
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K+V++N+KA Y+Y I +EAGI L GTEVKS+R+ K ++ +++ + E+++
Sbjct: 2 GKESIKLVANNKKAYYDYFIDEKYEAGIELFGTEVKSIRMGKCSVKEAFVKIDKGEVYVC 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R R+LLL K EI +L + + G TLVP+++YF L K+
Sbjct: 62 GMHISPYEKGNIFNKDPLRTRRLLLHKYEIMKLGGKIAQKGYTLVPLQVYFKGS-LVKVQ 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK YDKR K+D R+ + + N
Sbjct: 121 IGLARGKKLYDKRADIAKKDQRRELEKDFKVKN 153
>gi|171058740|ref|YP_001791089.1| SsrA-binding protein [Leptothrix cholodnii SP-6]
gi|226734257|sp|B1Y225|SSRP_LEPCP RecName: Full=SsrA-binding protein
gi|170776185|gb|ACB34324.1| SsrA-binding protein [Leptothrix cholodnii SP-6]
Length = 154
Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +NYHI FEAGIVL G E+KS+R ++ ++D Y ++ E++L I
Sbjct: 3 IAENKKAFFNYHIEERFEAGIVLAGWEIKSIRSGQIQLTDGYVVIKDGELFLIGLRINAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N P R +KLL+ K EI RL V + G TLVP+ +++ G K+D+ALA+G
Sbjct: 63 RSASTHVNPEPDRTKKLLMHKAEIRRLIGKVEQKGHTLVPLNLHYKG-GRVKVDVALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K +DKR T K RDW R++ R++R
Sbjct: 122 KAEHDKRHTIKDRDWQREQGRLMRHK 147
>gi|227499725|ref|ZP_03929825.1| tmRNA-binding protein [Anaerococcus tetradius ATCC 35098]
gi|227218192|gb|EEI83455.1| tmRNA-binding protein [Anaerococcus tetradius ATCC 35098]
Length = 148
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA ++Y I +EAGI L+G+EVKS++ KV+I +S+ N E+++ ++
Sbjct: 3 KLLANNKKAYHDYFIEEKYEAGISLSGSEVKSMKQGKVSIKESFIGDRNGEMFIYGMHVT 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A + P R RKLLL K+EI++L + G T+VP+++Y ++GL KI++ALA+
Sbjct: 63 PYDHAYDKDIDPTRTRKLLLHKKEINKLIGQKTQAGYTIVPLRVY-ESEGLVKIEIALAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKR++ K +D R+ R L+ +
Sbjct: 122 GKKQYDKRDSLKAKDDKRKIDRALKNY 148
>gi|225028611|ref|ZP_03717803.1| hypothetical protein EUBHAL_02890 [Eubacterium hallii DSM 3353]
gi|224954093|gb|EEG35302.1| hypothetical protein EUBHAL_02890 [Eubacterium hallii DSM 3353]
Length = 157
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ K++++N+KA ++Y I +EAGI L GTEVKSLR+ + +I +S+ T N L
Sbjct: 3 KSEGIKLIANNKKAYHDYFIDEKYEAGIALHGTEVKSLRMGRCSIKESFVTISNKGEILI 62
Query: 67 N-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y + N FN P R RKLLL K EI++L ++ G TL+P+K+YF L K+
Sbjct: 63 NHMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLAGQIKMKGYTLMPLKVYFKGS-LVKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ LA+GKK YDKR+ K+D R+ R + N
Sbjct: 122 EIGLARGKKLYDKRQDIAKKDAKREAERDFKIRN 155
>gi|296532900|ref|ZP_06895564.1| SsrA-binding protein [Roseomonas cervicalis ATCC 49957]
gi|296266772|gb|EFH12733.1| SsrA-binding protein [Roseomonas cervicalis ATCC 49957]
Length = 161
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ + NRKAR++Y I ++EAG+VL G EVKSLR + ++D++A + EIW
Sbjct: 6 KKSLISHGTAAQNRKARFDYKITDTYEAGLVLLGPEVKSLRAGRAALADAWAGERDGEIW 65
Query: 65 LTNSYIPEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L NSYIPE+ + PRR RKLLL K+++ L AV RDG+TLVP++I FN +G+A
Sbjct: 66 LFNSYIPEWQAGSFMAKFEPRRPRKLLLKKKQVETLTGAVARDGVTLVPLEILFNERGIA 125
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L L +GK DKR RDW R K R++RE
Sbjct: 126 KVVLGLGEGKNKADKRHAIAARDWQRDKARLMREK 160
>gi|187611503|sp|A5FPK5|SSRP_DEHSB RecName: Full=SsrA-binding protein
Length = 172
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I
Sbjct: 24 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 83
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G
Sbjct: 84 YECSGHTSHEPMRERKLLMHRKEIVLLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 142
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR+T KRD +R+ R ++ N
Sbjct: 143 KKLYDKRDTVTKRDTERELEREVKYRN 169
>gi|298529196|ref|ZP_07016599.1| SsrA-binding protein [Desulfonatronospira thiodismutans ASO3-1]
gi|298510632|gb|EFI34535.1| SsrA-binding protein [Desulfonatronospira thiodismutans ASO3-1]
Length = 155
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
S+G K+++ NRK R+ + I+ + EAG+ LTG+EVKSLR KV+ + Y F+ E +
Sbjct: 2 SQGKSGIKIIAVNRKVRHYFEIMETMEAGMALTGSEVKSLRAGKVSFKEGYVRFDRGEAY 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + +I Y A H P R R+LL+ K EI RL V + G+T++P ++YF G AK
Sbjct: 62 LVDVHIAPYENAGYAQHDPVRPRRLLMHKSEIKRLMGKVEQKGLTVIPTRMYFKQ-GRAK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+++ALA+G + +D+RET K+R +R R + ++
Sbjct: 121 VEIALARGLRLHDRRETLKRRAVERDTAREMAKY 154
>gi|157964513|ref|YP_001499337.1| SsrA-binding protein [Rickettsia massiliae MTU5]
gi|157844289|gb|ABV84790.1| tmRNA-binding protein [Rickettsia massiliae MTU5]
Length = 158
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 106/158 (67%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M++ KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+AT
Sbjct: 1 MTIYKNMTEYKKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHATDTG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K
Sbjct: 61 HEVFLYNCHIAEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K++L +A+GKK +DKRE+ +++DW R + R++R+
Sbjct: 121 NKVKVELGIAKGKKLHDKRESIQEKDWKRDQSRLIRQK 158
>gi|258648079|ref|ZP_05735548.1| SsrA-binding protein [Prevotella tannerae ATCC 51259]
gi|260851941|gb|EEX71810.1| SsrA-binding protein [Prevotella tannerae ATCC 51259]
Length = 159
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ P ++ N++A ++Y ++ AGIVLTGTE+KS+R+ K + D++ N
Sbjct: 1 MAKNNKLKPA-RINIKNKRAEHDYFVIDRLTAGIVLTGTEIKSIRLGKAGLVDTFCFINN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ N Y+ EY + H RR+RKLLL+K+EI + + G+T+VP+++Y +
Sbjct: 60 GEMWVKNMYVAEYSFGSYNRHELRRDRKLLLNKKEIRHWASETKSPGLTIVPLRLYIDEN 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ L +GKK YDKR T K+++ R+ R+ + H
Sbjct: 120 GRAKLDIGLCRGKKEYDKRATIKEKESRREIERVTKAH 157
>gi|164686799|ref|ZP_02210827.1| hypothetical protein CLOBAR_00394 [Clostridium bartlettii DSM
16795]
gi|164604189|gb|EDQ97654.1| hypothetical protein CLOBAR_00394 [Clostridium bartlettii DSM
16795]
Length = 152
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K ++ N+KAR+ Y I ++E GI L GTEVKSLR+ +VN+ D +A+ +N E++L +
Sbjct: 3 GTKNLATNKKARHEYFIEETYECGIELKGTEVKSLRMGRVNLKDGFASVDNSEVFLKQVH 62
Query: 70 IPEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I Y Q N F P R RKLLL K EI +L A G +L+P+ +Y G K++LA
Sbjct: 63 ISPYEQGNSFYKLDPMRPRKLLLHKSEIRKLIGATTIKGYSLIPLNMYLK-NGKVKVELA 121
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRIL 155
LA+GKK YDKR+ K+D R+ R +
Sbjct: 122 LAKGKKLYDKRQDMAKKDAQRRIEREM 148
>gi|289706407|ref|ZP_06502765.1| SsrA-binding protein [Micrococcus luteus SK58]
gi|289556902|gb|EFD50235.1| SsrA-binding protein [Micrococcus luteus SK58]
Length = 171
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 102/159 (64%), Gaps = 8/159 (5%)
Query: 1 MSLKSRGNPPKK-------VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53
M S+G K+ V+++N+KAR++Y I+ ++EAG+VLTGTEVKSLR K ++ D
Sbjct: 1 MGKNSKGKATKQPAPGERQVIANNKKARHDYTILDTYEAGMVLTGTEVKSLREGKASLVD 60
Query: 54 SYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPM 113
+A F DE+WL YIPEYL + NH RR RKLLL + E+ ++ ++ G+T+VP+
Sbjct: 61 GFAVFYRDELWLEQVYIPEYLNGSWTNHAARRRRKLLLHRAELTKISRQIQDPGLTIVPL 120
Query: 114 KIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152
+YF G K+++ +A+G + YDKR +++ +R+
Sbjct: 121 SLYF-LNGRVKVEIGVARGNREYDKRHKLREQQDNREAQ 158
>gi|308273410|emb|CBX30012.1| SsrA-binding protein [uncultured Desulfobacterium sp.]
Length = 152
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 71/151 (47%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
N K++S+NRKAR++Y I +EAG+VL GTEVKSLR+ + N+ DSYA +N EI++
Sbjct: 3 NTRNKIISENRKARHDYFIEDEYEAGMVLLGTEVKSLRLGRANLKDSYAKIKNGEIFVHQ 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I A NH P R RKLLL+++EI +L + V G +L+P+++YF G KI +
Sbjct: 63 MHIGPCPFAYYGNHDPLRIRKLLLNRQEIKKLTSKVNEKGHSLIPLRVYFK-NGKIKISI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
ALA+GK+ YDKRE KKRD +R R E
Sbjct: 122 ALAKGKRQYDKREAIKKRDENRDMERTRSER 152
>gi|169824350|ref|YP_001691961.1| SsrA-binding protein [Finegoldia magna ATCC 29328]
gi|302380509|ref|ZP_07268974.1| SsrA-binding protein [Finegoldia magna ACS-171-V-Col3]
gi|303233944|ref|ZP_07320593.1| SsrA-binding protein [Finegoldia magna BVS033A4]
gi|167831155|dbj|BAG08071.1| SsrA-binding protein [Finegoldia magna ATCC 29328]
gi|302311452|gb|EFK93468.1| SsrA-binding protein [Finegoldia magna ACS-171-V-Col3]
gi|302494869|gb|EFL54626.1| SsrA-binding protein [Finegoldia magna BVS033A4]
Length = 149
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KAR+ Y I +E GI L GTEVKS++ KV+I +SY EN E+++ + +
Sbjct: 5 KLLANNKKARHEYFIEEVYECGIELKGTEVKSIKKGKVSIKESYCMIENSEVFVYSMNVS 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + N FN R RKLL+ K EI +L + G TL+P+++Y GL K+++ALA+
Sbjct: 65 PYTEGNIFNVDSLRKRKLLMHKSEIRKLIGKTKEQGYTLIPLRVYAK-NGLVKVEIALAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GK YDKRET KKRD R R +R
Sbjct: 124 GKNLYDKRETLKKRDDLRNMQRAMRR 149
>gi|73749178|ref|YP_308417.1| SsrA-binding protein [Dehalococcoides sp. CBDB1]
gi|289433151|ref|YP_003463024.1| SsrA-binding protein [Dehalococcoides sp. GT]
gi|123620074|sp|Q3ZZ31|SSRP_DEHSC RecName: Full=SsrA-binding protein
gi|73660894|emb|CAI83501.1| SsrA-binding protein [Dehalococcoides sp. CBDB1]
gi|288946871|gb|ADC74568.1| SsrA-binding protein [Dehalococcoides sp. GT]
Length = 172
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I
Sbjct: 24 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 83
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G
Sbjct: 84 YECSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 142
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR+T KRD +R+ R ++ N
Sbjct: 143 KKLYDKRDTVTKRDTERELEREVKYRN 169
>gi|225874511|ref|YP_002755970.1| SsrA-binding protein [Acidobacterium capsulatum ATCC 51196]
gi|225793228|gb|ACO33318.1| SsrA-binding protein [Acidobacterium capsulatum ATCC 51196]
Length = 176
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 98/158 (62%), Gaps = 5/158 (3%)
Query: 2 SLKSRGNP----PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
S K + ++ + NR A +NY ++ +EAG+ L GTEVKS+R K N+ D+Y
Sbjct: 14 SAKPKPRDPVAAGERDAAQNRAASHNYFLLEKYEAGVALRGTEVKSIREGKANLKDAYGL 73
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
++ E +L N++I Y N NH R RKLLL++ E+ +L+ ++ G TL+P ++YF
Sbjct: 74 IKDGEAFLLNAHIGPYSHGNYTNHEALRTRKLLLNQTELKKLWGKTQQKGFTLIPTRLYF 133
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
G K +LA+A+GK+++DKRETE+KR+ DR+ +
Sbjct: 134 R-NGRVKCELAVAKGKQDWDKRETERKREADREARAAI 170
>gi|332141231|ref|YP_004426969.1| SsrA-binding protein [Alteromonas macleodii str. 'Deep ecotype']
gi|226734242|sp|B4RXY7|SSRP_ALTMD RecName: Full=SsrA-binding protein
gi|327551253|gb|AEA97971.1| SsrA-binding protein [Alteromonas macleodii str. 'Deep ecotype']
Length = 159
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M ++ N+KAR++Y + FEAG+ L G E+KS+R KVNI+D+Y +N
Sbjct: 1 MKKNKANKNTSGNIAQNKKARHDYFLEDKFEAGLELQGWEIKSIRAGKVNITDAYIIIQN 60
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L I Q + P R RKLLL KREI RL A R G ++V +Y+
Sbjct: 61 AEAYLVGCRISPLNQASTHVVAAPERARKLLLKKREIDRLMGARDRQGYSIVATSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K K+++ LA+GK +DKR+T K +DW RQK R+++
Sbjct: 120 KCWVKLEIHLAKGKHAHDKRDTLKDKDWQRQKERMMKH 157
>gi|224541476|ref|ZP_03682015.1| hypothetical protein CATMIT_00645 [Catenibacterium mitsuokai DSM
15897]
gi|224525599|gb|EEF94704.1| hypothetical protein CATMIT_00645 [Catenibacterium mitsuokai DSM
15897]
Length = 148
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 69/146 (47%), Positives = 98/146 (67%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++S+N+KA ++Y I+ +FEAGI L GTE+KS+R N+ D + ++ E ++ N YI
Sbjct: 2 KIISNNKKAYHDYFILETFEAGIELKGTEIKSIRKGSANLKDCFVRIKDHEAFIENMYIA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N FNH PRR RKLLL K+EI +L VR DG+T+VP K+YFN AK+++ALA+
Sbjct: 62 PYENGNIFNHEPRRIRKLLLHKKEISKLEKKVREDGLTIVPTKLYFNTS-KAKLEIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK YDKR K++D R + L+
Sbjct: 121 GKKLYDKRNDLKEKDAKRDIEKALKR 146
>gi|78186452|ref|YP_374495.1| SsrA-binding protein [Chlorobium luteolum DSM 273]
gi|123583351|sp|Q3B5C9|SSRP_PELLD RecName: Full=SsrA-binding protein
gi|78166354|gb|ABB23452.1| SsrA-binding protein [Chlorobium luteolum DSM 273]
Length = 157
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + + NRKARY Y I+ + AGI L G+EVKS+R+ K ++++S+AT +
Sbjct: 1 MAKKQQTRSYTEAI-QNRKARYEYQILETIVAGIELLGSEVKSVRLGKASLNESFATIHH 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
DE+WL N I Y + P+R+RKLLL K EI RL + + G+TL+P+K +F+
Sbjct: 60 DEVWLENMQITPYEFNHLDALEPKRSRKLLLHKEEIRRLQSKINEKGLTLIPLKAFFDKN 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K++LALA+GKK YDKRET K R+ +R ++ +++
Sbjct: 120 GRLKVELALAKGKKLYDKRETIKGRENERHLQQLRKQY 157
>gi|206895626|ref|YP_002246828.1| SsrA-binding protein [Coprothermobacter proteolyticus DSM 5265]
gi|226734249|sp|B5Y7T1|SSRP_COPPD RecName: Full=SsrA-binding protein
gi|206738243|gb|ACI17321.1| SsrA-binding protein [Coprothermobacter proteolyticus DSM 5265]
Length = 150
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ NR+AR++Y I+ ++EAGIVL+G EVKS + V + D++ EN E WL N +I
Sbjct: 2 KVLAQNRRARHDYQILETYEAGIVLSGDEVKSAKEGNVQLRDAFVRVENGEAWLYNMHIA 61
Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + F +R RKLLL KREI+++ + + G+T +P+ +Y N +G K+ + +A
Sbjct: 62 PYEKTGEPFRGDSKRKRKLLLHKREINKILGYLTQKGLTAIPLSMYVNDRGFIKVSIGVA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK DKR+T K+RD +R+ R +
Sbjct: 122 KGKKMVDKRQTIKERDIERELRREGKIR 149
>gi|94988045|ref|YP_596146.1| SsrA-binding protein [Streptococcus pyogenes MGAS9429]
gi|94991931|ref|YP_600030.1| SsrA-binding protein [Streptococcus pyogenes MGAS2096]
gi|166223460|sp|Q1JD22|SSRP_STRPB RecName: Full=SsrA-binding protein
gi|166223461|sp|Q1JMZ7|SSRP_STRPC RecName: Full=SsrA-binding protein
gi|94541553|gb|ABF31602.1| ssrA-binding protein [Streptococcus pyogenes MGAS9429]
gi|94545439|gb|ABF35486.1| SsrA-binding protein [Streptococcus pyogenes MGAS2096]
Length = 155
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTL P+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGSGMTLAPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K YDKRET K+RD +R + ++ +N
Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153
>gi|223042959|ref|ZP_03613007.1| SsrA-binding protein [Staphylococcus capitis SK14]
gi|222443813|gb|EEE49910.1| SsrA-binding protein [Staphylococcus capitis SK14]
Length = 156
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA +
Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEDTVEAGIALQGTEIKSIRRGSANLKDSYAQVKR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + NRFNH P R+RKLLL KREI +L R G +L+P+K+Y
Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREIGYSLIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKK +DKR+ K + R R ++
Sbjct: 118 GQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKAR 155
>gi|15673704|ref|NP_267878.1| SsrA-binding protein [Lactococcus lactis subsp. lactis Il1403]
gi|281492313|ref|YP_003354293.1| SsrA-binding protein [Lactococcus lactis subsp. lactis KF147]
gi|13878776|sp|Q9CEW2|SSRP_LACLA RecName: Full=SsrA-binding protein
gi|12724740|gb|AAK05820.1|AE006402_8 tmRNA-binding protein SmpB [Lactococcus lactis subsp. lactis
Il1403]
gi|281375977|gb|ADA65468.1| SsrA-binding protein [Lactococcus lactis subsp. lactis KF147]
gi|326407188|gb|ADZ64259.1| SsrA-binding protein [Lactococcus lactis subsp. lactis CV56]
Length = 155
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
N K ++ N+KAR++Y I +FEAGIVLTGTE+KS+R +K+ + D +A N E+WL+
Sbjct: 3 KNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLS 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I + Q N FN R RKLLL+K+EI ++ + G+T +P+K+Y G AK+
Sbjct: 63 NVHIAPFEQGNIFNVEELRTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLK-NGFAKVL 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ LA+GKK+YDKRET K+++ +R R ++ +N
Sbjct: 122 MGLARGKKDYDKRETLKRKEQNRDIARQIKAYN 154
>gi|262172132|ref|ZP_06039810.1| tmRNA-binding protein SmpB [Vibrio mimicus MB-451]
gi|261893208|gb|EEY39194.1| tmRNA-binding protein SmpB [Vibrio mimicus MB-451]
Length = 161
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY +
Sbjct: 1 MTKKKSNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R R+LLLS+RE+ L+ + R+GMTL + +Y++
Sbjct: 61 DGEAFISGMTIIPLQQASTHVVANPTRIRRLLLSRRELDNLFGRINREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +A+GKK +DKRE K+++W RQK R+++
Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157
>gi|114327860|ref|YP_745017.1| SsrA-binding protein [Granulibacter bethesdensis CGDNIH1]
gi|122327176|sp|Q0BSV8|SSRP_GRABC RecName: Full=SsrA-binding protein
gi|114316034|gb|ABI62094.1| ssrA-binding protein [Granulibacter bethesdensis CGDNIH1]
Length = 162
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 3/161 (1%)
Query: 1 MSLKSRGNPPK---KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ G V + NRKAR++Y I + EAG+VL G EVKSLR + +S+++A
Sbjct: 1 MAETKSGKSGLISHGVAAQNRKARFDYTIKETVEAGLVLKGPEVKSLRHGRATLSEAWAG 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E++L N+YIPEY PR RKLLL +++I+ L AV++ G T+VP++I+F
Sbjct: 61 ERDGEMFLFNAYIPEYQGGVLSRFEPRSPRKLLLKRKQINHLLGAVQKQGQTVVPLQIHF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
N +G+AK+ L +A+G+ DKR RDW R K R++RE
Sbjct: 121 NERGMAKVLLGVAEGRNKADKRAAIASRDWQRDKARLMREK 161
>gi|114776883|ref|ZP_01451926.1| SsrA-binding protein [Mariprofundus ferrooxydans PV-1]
gi|114552969|gb|EAU55400.1| SsrA-binding protein [Mariprofundus ferrooxydans PV-1]
Length = 146
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 59/143 (41%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
NR+AR+ YHI+ + E G++LTG EVKS+R+ + N+++++ N + L +I Y
Sbjct: 3 IVNRRARHEYHILETLETGMMLTGPEVKSIRLGQANLAEAHCIIRNGRMLLIGCHISPYK 62
Query: 75 QANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
A N P R+R+LLL+KRE+ RL ++ G+T+VP+K+YFN + AK+++ LA+GK
Sbjct: 63 PAAMNNPADPTRSRQLLLNKRELERLVGRLKESGLTIVPLKLYFNERNYAKLEVGLARGK 122
Query: 134 KNYDKRETEKKRDWDRQKHRILR 156
K +DKR K+RD R R R
Sbjct: 123 KMHDKRAAIKERDVKRDLQRTYR 145
>gi|329729662|gb|EGG66063.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 21193]
Length = 154
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +N E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N YI Y + NRFNH P R+RKLLL KREI +L R G ++VP+K+Y G
Sbjct: 59 MYLNNMYIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLK-HGH 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKAR 153
>gi|157961110|ref|YP_001501144.1| SsrA-binding protein [Shewanella pealeana ATCC 700345]
gi|167623277|ref|YP_001673571.1| SsrA-binding protein [Shewanella halifaxensis HAW-EB4]
gi|189046845|sp|B0TLG2|SSRP_SHEHH RecName: Full=SsrA-binding protein
gi|189046846|sp|A8H222|SSRP_SHEPA RecName: Full=SsrA-binding protein
gi|157846110|gb|ABV86609.1| SsrA-binding protein [Shewanella pealeana ATCC 700345]
gi|167353299|gb|ABZ75912.1| SsrA-binding protein [Shewanella halifaxensis HAW-EB4]
Length = 164
Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats.
Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 3/160 (1%)
Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY
Sbjct: 1 MAKKNAKNSKNSSASIARNKRATFDYKFEEKLEAGLSLMGWEVKSIRMGKVNLSESYVFL 60
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
E +L I ++ P R+RKLLL ++E+ +L V R G ++VP+ +Y+
Sbjct: 61 REGEAYLFGCTIAPLNTASSHVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI++ L +GKK +DKR+ K R+W +K R +++
Sbjct: 121 QKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTIKK 160
>gi|288801238|ref|ZP_06406693.1| SsrA-binding protein [Prevotella sp. oral taxon 299 str. F0039]
gi|288331849|gb|EFC70332.1| SsrA-binding protein [Prevotella sp. oral taxon 299 str. F0039]
Length = 159
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 97/155 (62%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + + NRKA ++Y + +F AGIVLTGTE+KS+R K ++ D++ + EI
Sbjct: 5 KKNSDKKSSIQIKNRKASFDYFFIDTFTAGIVLTGTEIKSIRQGKASLVDTFCYIHDGEI 64
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
W+ I Y + NH +R+RKLLL KREI RL + G+T+VP+ ++ + G A
Sbjct: 65 WVKGMNITPYFYGSFTNHEAKRDRKLLLKKREIRRLEEETKSVGVTIVPILLFIDQNGRA 124
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ALA+GKK YDKR+T K+++ R+ R ++ +
Sbjct: 125 KVNIALARGKKEYDKRQTLKEKEDRREMDRAIKRY 159
>gi|322517145|ref|ZP_08070029.1| SsrA-binding protein [Streptococcus vestibularis ATCC 49124]
gi|322124295|gb|EFX95806.1| SsrA-binding protein [Streptococcus vestibularis ATCC 49124]
Length = 154
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R ++V + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARVQLKDGYAQIKNGEAWLINVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQDPDRTRKLLLKKKQITKLQNDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R +RI++ N
Sbjct: 126 GKHDYDKRESIKRREQERDINRIIKSVN 153
>gi|268680248|ref|YP_003304679.1| SsrA-binding protein [Sulfurospirillum deleyianum DSM 6946]
gi|268618279|gb|ACZ12644.1| SsrA-binding protein [Sulfurospirillum deleyianum DSM 6946]
Length = 154
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ N+KA ++Y I+ EAGIVL G+EVK++R +VN+ DS+ E +L N++I
Sbjct: 5 VARNKKAFHDYEILEKLEAGIVLQGSEVKAIRQGRVNLKDSFVKIIKGEAFLLNAHISHL 64
Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
AN F R RKLLL +++ + V +DG+T+VP+ IYFNAK LAK+++ALA+G
Sbjct: 65 STANLNFAPNERAPRKLLLHVKQLRKWDMKVAKDGLTIVPLAIYFNAKNLAKVEIALARG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K +DKRE+ K++D R+ ++ H
Sbjct: 125 KNEHDKRESLKEKDAQREAQTAMKNH 150
>gi|239947283|ref|ZP_04699036.1| SsrA-binding protein [Rickettsia endosymbiont of Ixodes scapularis]
gi|239921559|gb|EER21583.1| SsrA-binding protein [Rickettsia endosymbiont of Ixodes scapularis]
Length = 152
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 TEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|258620030|ref|ZP_05715070.1| SsrA-binding protein [Vibrio mimicus VM573]
gi|258587763|gb|EEW12472.1| SsrA-binding protein [Vibrio mimicus VM573]
Length = 161
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY +
Sbjct: 1 MTKKKSNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVFIK 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
E +++ I Q + P R R+LLLS+RE+ L+ + R+GMTL + +Y++
Sbjct: 61 EGEAFISGMTITPLQQASTHVVANPTRIRRLLLSRRELDNLFGRINREGMTLTALSLYWS 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+ KI + +A+GKK +DKRE K+++W RQK R+++
Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157
>gi|315658864|ref|ZP_07911731.1| SsrA-binding protein [Staphylococcus lugdunensis M23590]
gi|315495988|gb|EFU84316.1| SsrA-binding protein [Staphylococcus lugdunensis M23590]
Length = 154
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G
Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREVGYSIIPLKLYLK-HGH 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAMKRDVDRAMKAR 153
>gi|319936743|ref|ZP_08011156.1| SsrA-binding protein [Coprobacillus sp. 29_1]
gi|319808300|gb|EFW04865.1| SsrA-binding protein [Coprobacillus sp. 29_1]
Length = 148
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ N+KA ++Y I+ ++EAGI L GTE+KS+R VN+ DS+ NDE ++ N +I
Sbjct: 2 KIVAQNKKAYHDYFILDTYEAGIELQGTEIKSIRKGSVNLKDSFIRIRNDEAFIDNMHIA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NRFNH P R RKLLL K+EI +L ++ +G+T+VP K+YFN K+++ALA+
Sbjct: 62 SYEQGNRFNHEPLRQRKLLLHKKEIKKLQKELKENGLTIVPTKLYFNTS-KLKVEIALAR 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK YDKR+ K++D R + L+
Sbjct: 121 GKKLYDKRQDLKEKDSKRDIEKALKN 146
>gi|121998267|ref|YP_001003054.1| SsrA-binding protein [Halorhodospira halophila SL1]
gi|187611481|sp|A1WX40|SSRP_HALHL RecName: Full=SsrA-binding protein
gi|121589672|gb|ABM62252.1| SsrA-binding protein [Halorhodospira halophila SL1]
Length = 165
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 4/160 (2%)
Query: 2 SLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
S K V++ NRKA +++ + EAG+ L G EVK+LR +VN+++S+
Sbjct: 5 SKKAGKSKKTEGNVIALNRKAGFDFFVEERLEAGLALEGWEVKALRAKRVNLTESHVLVR 64
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
E WL I + + P R RKLLL +REI+RL AV RDG T+VP+K+Y+
Sbjct: 65 RGEAWLIGCNITPLSTASTHIHPDPTRTRKLLLHRREINRLIGAVDRDGYTVVPLKLYWK 124
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AKI++ +A+GKK DKR +K++DW RQ+ R+L+
Sbjct: 125 -RGRAKIEIGVAKGKKKQDKRADKKEQDWQRQRERLLKHK 163
>gi|152981401|ref|YP_001353576.1| SsrA-binding protein [Janthinobacterium sp. Marseille]
gi|151281478|gb|ABR89888.1| SsrA(tmRNA)-binding protein [Janthinobacterium sp. Marseille]
Length = 149
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++Y I +EAG++L G EVK++R +V + ++Y +EI+L +++
Sbjct: 3 IVDNRKAFHDYFIEDRYEAGVMLQGWEVKAIRAGRVQLKEAYVIARGNEIFLFGAHVSAL 62
Query: 74 LQANRFNHYP-RRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
A+ F+H R RKLLL EI +L + V + G T+VP+ +++ +G K D+ALA+G
Sbjct: 63 NSASSFSHPEAVRTRKLLLHAAEIKKLLSKVDQSGFTMVPLNLHW-VRGRVKCDIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR TEK RDW R+ +I++ H
Sbjct: 122 KKEYDKRNTEKDRDWMREHQKIMKIH 147
>gi|332041660|gb|EGI78016.1| SsrA-binding protein [Hylemonella gracilis ATCC 19624]
Length = 163
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 5/163 (3%)
Query: 1 MSLKSRGNPPKKV---VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
MS + + ++DN+KA +NYHI FEAG+VL G EVK+LR KV ++D Y
Sbjct: 1 MSTDKKKTAKTALPARIADNKKALFNYHIEERFEAGMVLEGWEVKALREGKVQLTDGYVV 60
Query: 58 FENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
++ E++L I + R +KLLL K EI RL V + G TLVP+ ++
Sbjct: 61 IKSGELFLIGCQINPLNTASTHVRPDSVRTKKLLLHKEEIRRLVGKVEQKGHTLVPLNLH 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ G K+++ALA+GK +DKR+T K R+ R+ R +++ +
Sbjct: 121 WK-NGKVKVEIALAKGKAEHDKRDTIKDREGKREVERAMKQRS 162
>gi|269798069|ref|YP_003311969.1| SsrA-binding protein [Veillonella parvula DSM 2008]
gi|269094698|gb|ACZ24689.1| SsrA-binding protein [Veillonella parvula DSM 2008]
Length = 156
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ KS + +++DNRKAR+++HI ++EAGI LTGTE+KS+R K+N+ DS+ +
Sbjct: 1 MAKKSSPS----LIADNRKARHDFHIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+
Sbjct: 57 RELLLYGVHISPYEQGNRFNHEPERTRKLLMHKSEINKLHAQVKEKGFSLVPLNFHFS-H 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ + L GKK YDKR+ +RD R + ++E
Sbjct: 116 GYVKVTVGLVTGKKIYDKRQDMAERDAKRDIAKRIKE 152
>gi|19745622|ref|NP_606758.1| SsrA-binding protein [Streptococcus pyogenes MGAS8232]
gi|23822166|sp|Q8P244|SSRP_STRP8 RecName: Full=SsrA-binding protein
gi|19747750|gb|AAL97257.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
Length = 155
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KAR +YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 8 ILAQNKKARLDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G
Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K +YDKRET K+RD +R + ++ +N
Sbjct: 127 KHDYDKRETIKRRDQERDIKKQMKHYN 153
>gi|67459053|ref|YP_246677.1| SsrA-binding protein [Rickettsia felis URRWXCal2]
gi|75536513|sp|Q4ULR1|SSRP_RICFE RecName: Full=SsrA-binding protein
gi|67004586|gb|AAY61512.1| tmRNA-binding protein [Rickettsia felis URRWXCal2]
Length = 152
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|282853675|ref|ZP_06263012.1| SsrA-binding protein [Propionibacterium acnes J139]
gi|282583128|gb|EFB88508.1| SsrA-binding protein [Propionibacterium acnes J139]
gi|314983202|gb|EFT27294.1| SsrA-binding protein [Propionibacterium acnes HL110PA3]
gi|315092423|gb|EFT64399.1| SsrA-binding protein [Propionibacterium acnes HL110PA4]
Length = 160
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
KVV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVKVVARNRRAAHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L V G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREVDGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154
>gi|195978520|ref|YP_002123764.1| SsrA-binding protein [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|238689828|sp|B4U434|SSRP_STREM RecName: Full=SsrA-binding protein
gi|195975225|gb|ACG62751.1| SsrA-binding protein SmpB [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 155
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ ++KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 7 NVLAQHKKARHDYHIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+
Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREIQHLADELKGTGMTLVPLKVYLKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R+++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIRRVMKSVN 153
>gi|328948019|ref|YP_004365356.1| SsrA-binding protein [Treponema succinifaciens DSM 2489]
gi|328448343|gb|AEB14059.1| SsrA-binding protein [Treponema succinifaciens DSM 2489]
Length = 154
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K V+ NRKA +NY + S E GI L G+EVKS++ ++ DS+A EN E+WL N +I
Sbjct: 5 RKTVAQNRKAHFNYIVTDSIECGIALEGSEVKSIKAGNISFGDSFAFIENGEVWLQNFHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY ++ FNH P R +KLLL K EI RL G TLVP+++Y KGL KI+L L
Sbjct: 65 SEYSFSSVFNHEPDRKKKLLLHKDEIKRLQRKTEEKGFTLVPLEVYLK-KGLVKINLGLC 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR K RD R R R
Sbjct: 124 KGKKEFDKRAAIKDRDVKRDIAREFRNR 151
>gi|188995334|ref|YP_001929586.1| SsrA-binding protein [Porphyromonas gingivalis ATCC 33277]
gi|188595014|dbj|BAG33989.1| putative SsrA-binding protein [Porphyromonas gingivalis ATCC 33277]
Length = 153
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 99/152 (65%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ K ++ N++A ++Y I+ + AGIVL GTE+KSLR+ K + D+Y F E+W+
Sbjct: 2 KEKIQKNILIKNKRATFDYEILDVYTAGIVLVGTEIKSLRLGKGGLVDTYCYFHRGELWV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N YI EY NH RR+RKLLL+++E+ +L A + G T+VP+K++ N +GLAK+
Sbjct: 62 KNMYIAEYFYGTYNNHVARRDRKLLLNRKELRKLEEASKSVGTTIVPLKLFINERGLAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ LA+GKK YDKR + K+RD R+ R L+
Sbjct: 122 QIGLARGKKQYDKRASIKERDDRREMDRALKR 153
>gi|120612028|ref|YP_971706.1| SsrA-binding protein [Acidovorax citrulli AAC00-1]
gi|166222351|sp|A1TSJ4|SSRP_ACIAC RecName: Full=SsrA-binding protein
gi|120590492|gb|ABM33932.1| SsrA-binding protein [Acidovorax citrulli AAC00-1]
Length = 157
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++DN+KA +NY EAG+VL G EVK+LR KV ++D Y
Sbjct: 1 MAKKPETLSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIRE 57
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E++L I + + R +KLLL K EI RL A V + G TLVP+ +++
Sbjct: 58 GELYLIGCQINPLKTASTHVSPDAVRTKKLLLHKDEIKRLTAKVEQKGYTLVPLNLHWT- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK ++ALA+GK +DKR+T K+R+ R+ R ++
Sbjct: 117 NGRAKCEIALAKGKAEHDKRDTIKEREGKREVERAMKSR 155
>gi|300727176|ref|ZP_07060593.1| SsrA-binding protein [Prevotella bryantii B14]
gi|299775524|gb|EFI72117.1| SsrA-binding protein [Prevotella bryantii B14]
Length = 159
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+K ++ + N+KA ++Y V +F AGIVLTGTE+KS+R K ++ D++
Sbjct: 1 MKKEDQEVRRKSPIQIKNKKASFDYFFVDTFTAGIVLTGTEIKSIRDGKASLVDTFCDIY 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EIW+ NSYI Y + NH RR+RKLLL+KREIH+L AV+ G T+VP ++ +
Sbjct: 61 QGEIWVKNSYIAPYFYGSFSNHSARRDRKLLLNKREIHKLEEAVKTPGNTIVPTLLFIDD 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK YDKR+T +++ R+ R ++
Sbjct: 121 HGRAKLDIALARGKKEYDKRQTLREKQDRREMDRAIKHF 159
>gi|218263099|ref|ZP_03477330.1| hypothetical protein PRABACTJOHN_03011 [Parabacteroides johnsonii
DSM 18315]
gi|218222951|gb|EEC95601.1| hypothetical protein PRABACTJOHN_03011 [Parabacteroides johnsonii
DSM 18315]
Length = 154
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 102/153 (66%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + N++A ++Y ++ +F AGIVLTGTE+KS+R+ K ++ D++ E E+W+
Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N Y+ EY NH RR+RKLLL+K+E+ ++ A R +G T++P +++ N KGLAK+
Sbjct: 62 KNMYVAEYFYGTYNNHTARRDRKLLLTKKELRKIEGAARNNGFTIIPTRLFINDKGLAKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+A+GKK YDKR++ K+RD R+ R + +
Sbjct: 122 VVAIAKGKKEYDKRDSIKERDDRREMDRAFKRN 154
>gi|300770821|ref|ZP_07080698.1| SsrA-binding protein [Sphingobacterium spiritivorum ATCC 33861]
gi|300762094|gb|EFK58913.1| SsrA-binding protein [Sphingobacterium spiritivorum ATCC 33861]
Length = 151
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 98/146 (67%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+ N++A + YH++ + AG+ L GTE+KS+R K NI+DS+ F +++ N +I
Sbjct: 6 NINIKNKRASFEYHLLDKYVAGLQLLGTEIKSIREGKANINDSFCAFFEKGLYIRNMHIA 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY + +NH +R+R+LLL+KRE+ +L A G T+VP++I+ N +G AK+++ALAQ
Sbjct: 66 EYSHGSFYNHEAKRDRQLLLTKRELKKLRAKGDEKGFTIVPLRIFVNERGFAKVEIALAQ 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK++DKR+T K RD R+ R ++
Sbjct: 126 GKKDFDKRDTIKDRDAKRELDRAMKR 151
>gi|300088563|ref|YP_003759085.1| SsrA-binding protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528296|gb|ADJ26764.1| SsrA-binding protein [Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 152
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/148 (45%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK+V+ N KA +NY+I EAG+VLTGTE+KS+R +V++ D+Y +N E+WL N++I
Sbjct: 4 KKIVATNHKAYHNYYISDPMEAGLVLTGTEIKSVRGGRVSLGDAYVRPDNGELWLLNAHI 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + +H P R RKLL+ K+E+ ++ A ++ G+TLVP K+Y +AK+++A+
Sbjct: 64 ARYDPGSYMSHEPTRRRKLLVHKKEMRQMLARIKEQGLTLVPTKVYIKGN-VAKVEVAVG 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKRE KKRD DR+ R+LR
Sbjct: 123 KGKKLYDKREVIKKRDSDRELGRVLRAR 150
>gi|288924973|ref|ZP_06418909.1| SsrA-binding protein [Prevotella buccae D17]
gi|288338163|gb|EFC76513.1| SsrA-binding protein [Prevotella buccae D17]
Length = 154
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 95/146 (65%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N+KA + Y + ++ AGIVLTGTE+KS+R + ++ D++ N E+WL I
Sbjct: 9 IQIRNKKASFEYAFLDTYTAGIVLTGTEIKSIRQGRASLVDTFCFIHNGEMWLKGMNISP 68
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH +R+RKLLL+KREIH+L A ++ G T+VP ++ + G AK+D+ALA+G
Sbjct: 69 YFYGSFSNHEAKRDRKLLLNKREIHKLQEATKQVGFTIVPTLVFIDDHGRAKVDIALARG 128
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR+T ++++ R+ R ++
Sbjct: 129 KKEFDKRQTIREKEDKREMERAIKRF 154
>gi|323700105|ref|ZP_08112017.1| SsrA-binding protein [Desulfovibrio sp. ND132]
gi|323460037|gb|EGB15902.1| SsrA-binding protein [Desulfovibrio desulfuricans ND132]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++ N++AR Y I+ +FEAGI L G+EVKSLR +V+ D Y +F
Sbjct: 1 MAKKKNKTLSPDTIAVNKQARRLYEILETFEAGISLVGSEVKSLRGGQVSFKDGYVSFRQ 60
Query: 61 DEIWLTNSYIPEYLQANRFNHY-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+L +I Y + ++ + P R R+LLL K EI L A + G+T+VPMK+YF+
Sbjct: 61 GSAFLVGVHIAPYEKTGTYDQHDPERARRLLLHKHEISVLQAKTEQKGLTVVPMKMYFS- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G K+ L L +GK + K++ K RD R R L +
Sbjct: 120 RGKVKVQLGLGRGKNVHSKKQDLKDRDIARDTQRQLASY 158
>gi|23099881|ref|NP_693347.1| SsrA-binding protein [Oceanobacillus iheyensis HTE831]
gi|30173296|sp|Q8ENQ2|SSRP_OCEIH RecName: Full=SsrA-binding protein
gi|22778112|dbj|BAC14382.1| ssrA-binding protein [Oceanobacillus iheyensis HTE831]
Length = 155
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 2/152 (1%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLT 66
KV++ N+KA ++Y I ++EAGIVL GTE+KS+R +VNI DS+A E+ L
Sbjct: 3 KGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQLI 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I EY Q NR+NH P R+RKLLL ++EI +L ++ G LVP+KIY G AK+
Sbjct: 63 NLHIAEYEQGNRYNHDPTRSRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLK-NGFAKVL 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ L +GKK YDKRE K++ R R +++H
Sbjct: 122 IGLGKGKKKYDKREDLKQKQMKRDVDRAIKDH 153
>gi|150007070|ref|YP_001301813.1| SsrA-binding protein [Parabacteroides distasonis ATCC 8503]
gi|255015304|ref|ZP_05287430.1| SsrA-binding protein [Bacteroides sp. 2_1_7]
gi|256840227|ref|ZP_05545735.1| SsrA-binding protein [Parabacteroides sp. D13]
gi|262381065|ref|ZP_06074203.1| SsrA-binding protein [Bacteroides sp. 2_1_33B]
gi|298377491|ref|ZP_06987443.1| SsrA-binding protein [Bacteroides sp. 3_1_19]
gi|301311267|ref|ZP_07217195.1| SsrA-binding protein [Bacteroides sp. 20_3]
gi|166223235|sp|A6L927|SSRP_PARD8 RecName: Full=SsrA-binding protein
gi|149935494|gb|ABR42191.1| SsrA-binding protein [Parabacteroides distasonis ATCC 8503]
gi|256737499|gb|EEU50825.1| SsrA-binding protein [Parabacteroides sp. D13]
gi|262296242|gb|EEY84172.1| SsrA-binding protein [Bacteroides sp. 2_1_33B]
gi|298265510|gb|EFI07171.1| SsrA-binding protein [Bacteroides sp. 3_1_19]
gi|300830841|gb|EFK61483.1| SsrA-binding protein [Bacteroides sp. 20_3]
Length = 153
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 101/152 (66%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + N++A ++Y ++ +F AGIVLTGTE+KS+R+ K ++ D++ E E+W+
Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N YI EY NH RR+RKLLL+K+E+ ++ AVR G T+VP +++ N KGLAK+
Sbjct: 62 KNMYIAEYFYGTYNNHNARRDRKLLLTKKELRKIEGAVRASGFTIVPTRLFINEKGLAKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+A+GKK YDKR++ ++RD R+ R +
Sbjct: 122 VVAIARGKKEYDKRDSIRERDDRREMDRAFKR 153
>gi|301063447|ref|ZP_07203979.1| SsrA-binding protein [delta proteobacterium NaphS2]
gi|300442386|gb|EFK06619.1| SsrA-binding protein [delta proteobacterium NaphS2]
Length = 151
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V N+KAR+ Y + FEAG+VL G EVKSLR + ++ DSYA + E++L N +I
Sbjct: 4 KIVCQNKKARHEYFLDEFFEAGLVLMGAEVKSLREGRASLVDSYARVKQGEVFLHNMHIT 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A+ P R RKLLL+KREI RL + G +L+P K+YF +G AK+++ALA+
Sbjct: 64 PYPFAHHMEMDPMRIRKLLLNKREIKRLIGKTEQKGYSLIPTKVYFT-RGKAKVEIALAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK YDKR K+++ R + +
Sbjct: 123 GKKKYDKRSALKEKELKRDMDQARKR 148
>gi|225868150|ref|YP_002744098.1| SsrA-binding protein [Streptococcus equi subsp. zooepidemicus]
gi|259511430|sp|C0MCH3|SSRP_STRS7 RecName: Full=SsrA-binding protein
gi|225701426|emb|CAW98529.1| SsrA-binding protein [Streptococcus equi subsp. zooepidemicus]
Length = 155
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ ++KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 7 NVLAQHKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+
Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREIQHLADELKGTGMTLVPLKVYLKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R+++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIRRVMKSVN 153
>gi|148244509|ref|YP_001219203.1| SsrA-binding protein [Candidatus Vesicomyosocius okutanii HA]
gi|166223472|sp|A5CX31|SSRP_VESOH RecName: Full=SsrA-binding protein
gi|146326336|dbj|BAF61479.1| SsrA-binding protein [Candidatus Vesicomyosocius okutanii HA]
Length = 161
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/160 (40%), Positives = 102/160 (63%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K++ ++ N+KAR+ Y I ++ EAG+ L G EVKSLR SKV I +SY +
Sbjct: 1 MAKKNK-KISLNTIAFNKKARHVYFIEQTLEAGLSLEGWEVKSLRDSKVQIKESYVILRS 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+EI+L ++I + N P R RKLLL++ EI+R+ + + G T+V +K+Y+
Sbjct: 60 NEIFLYGAHISPLKSVSTHVNSDPIRTRKLLLNRLEINRIKEKINQKGATIVALKLYW-I 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+G+ K+++ LA+GKK+YDKR+ K RDW R K R L++ N
Sbjct: 119 RGMVKLEIGLAKGKKSYDKRQDNKLRDWQRDKQRTLKQIN 158
>gi|187631666|sp|A8F1K4|SSRP_RICM5 RecName: Full=SsrA-binding protein
Length = 152
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 103/148 (69%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+AT E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHATDTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ +++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIQEKDWKRDQSRLIRQK 152
>gi|27467484|ref|NP_764121.1| SsrA-binding protein [Staphylococcus epidermidis ATCC 12228]
gi|57866445|ref|YP_188044.1| SsrA-binding protein [Staphylococcus epidermidis RP62A]
gi|242242153|ref|ZP_04796598.1| SsrA-binding protein [Staphylococcus epidermidis W23144]
gi|251810217|ref|ZP_04824690.1| SsrA-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282875636|ref|ZP_06284507.1| SsrA-binding protein [Staphylococcus epidermidis SK135]
gi|293368246|ref|ZP_06614875.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W2(grey)]
gi|30173245|sp|Q8CPX9|SSRP_STAES RecName: Full=SsrA-binding protein
gi|67461883|sp|Q5HQU5|SSRP_STAEQ RecName: Full=SsrA-binding protein
gi|27315027|gb|AAO04163.1|AE016745_262 ssrA-binding protein [Staphylococcus epidermidis ATCC 12228]
gi|57637103|gb|AAW53891.1| SsrA-binding protein [Staphylococcus epidermidis RP62A]
gi|242234408|gb|EES36720.1| SsrA-binding protein [Staphylococcus epidermidis W23144]
gi|251806269|gb|EES58926.1| SsrA-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281295663|gb|EFA88186.1| SsrA-binding protein [Staphylococcus epidermidis SK135]
gi|291317669|gb|EFE58086.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W2(grey)]
gi|319401140|gb|EFV89355.1| ssrA-binding protein [Staphylococcus epidermidis FRI909]
gi|329723322|gb|EGG59852.1| SsrA-binding protein [Staphylococcus epidermidis VCU144]
gi|329736731|gb|EGG72996.1| SsrA-binding protein [Staphylococcus epidermidis VCU028]
gi|329737989|gb|EGG74213.1| SsrA-binding protein [Staphylococcus epidermidis VCU045]
Length = 156
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DS+A
Sbjct: 1 MAKKKSKSPG--TLAENRKARHDYNIEDTIEAGIALRGTEIKSIRRGSANLKDSFAQVRR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + NRFNH P R RKLLL K+EI +L R G +++P+K+Y
Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRTRKLLLHKKEIQKLGERTREIGYSIIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 GQCKVLLGVARGKKKYDKRQALKEKAVKRDIDRAVKAR 155
>gi|298368620|ref|ZP_06979938.1| SsrA-binding protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298282623|gb|EFI24110.1| SsrA-binding protein [Neisseria sp. oral taxon 014 str. F0314]
Length = 148
Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 93/145 (64%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R +V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDQLEAGLVLEGWEVKAVRAGRVQLKESYIHWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL++ EI++L R G T+VP+ +++N +G K+D+ LA+G
Sbjct: 63 PTASTHVKPDPVRQRKLLLNRSEINKLIGKTERAGYTVVPLNLHYN-RGKIKMDIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R++++
Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKQ 146
>gi|325856909|ref|ZP_08172407.1| SsrA-binding protein [Prevotella denticola CRIS 18C-A]
gi|325483282|gb|EGC86259.1| SsrA-binding protein [Prevotella denticola CRIS 18C-A]
Length = 159
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+ +K V N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+
Sbjct: 1 MNKEQQERRKKSPVQIRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCYIN 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH RR RKLLL+++EI L A + G T++P I+ +
Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEARRPRKLLLTRKEIRNLEAESKTPGFTIIPTLIFIDE 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK YDKR+T K+++ R+ R + +
Sbjct: 121 HGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRARKHY 159
>gi|150391302|ref|YP_001321351.1| SsrA-binding protein [Alkaliphilus metalliredigens QYMF]
gi|187611466|sp|A6TU24|SSRP_ALKMQ RecName: Full=SsrA-binding protein
gi|149951164|gb|ABR49692.1| SsrA-binding protein [Alkaliphilus metalliredigens QYMF]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 99/158 (62%), Gaps = 6/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +K ++ N+KAR++Y I +FEAG+VL GTEVKS+R K+NI + YA EN
Sbjct: 1 MAEK-----GQKSLAVNKKARFDYLIEDTFEAGMVLVGTEVKSIRQGKINIKEGYARIEN 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI+L N +I Y Q N FN P R RKLLL K EI +L V++ G TLVPMK+Y
Sbjct: 56 SEIYLHNVHISPYEQGNIFNKDPLRIRKLLLHKAEIRKLIGYVQQKGYTLVPMKVYL-QN 114
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL K+ L + GKK +DKR+ K+D R+ + L +
Sbjct: 115 GLVKLQLGVGVGKKLHDKRQDMAKKDSQRRIQKELGQR 152
>gi|241764261|ref|ZP_04762292.1| SsrA-binding protein [Acidovorax delafieldii 2AN]
gi|241366384|gb|EER60906.1| SsrA-binding protein [Acidovorax delafieldii 2AN]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 3/158 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P + ++DN+KA YNY EAG+VL G EVK+LR KV ++D Y E
Sbjct: 1 MAKKPDPTSR-IADNKKAAYNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVLIREGE 59
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L I + N R +KLLL K +I RL V + G TLVP+ +++ G
Sbjct: 60 LYLLGCLIHPLKTASTHVNPESARTKKLLLKKDDIKRLIGKVEQKGYTLVPINLHWK-NG 118
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K ++ALA+GK +DKR+T K R+ R+ R ++ N
Sbjct: 119 FVKCEIALAKGKAEHDKRDTIKDREGKREVERAMKSRN 156
>gi|34580489|ref|ZP_00141969.1| small protein B homolog [Rickettsia sibirica 246]
gi|28261874|gb|EAA25378.1| small protein B homolog [Rickettsia sibirica 246]
Length = 152
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|319891786|ref|YP_004148661.1| tmRNA-binding protein SmpB [Staphylococcus pseudintermedius
HKU10-03]
gi|317161482|gb|ADV05025.1| tmRNA-binding protein SmpB [Staphylococcus pseudintermedius
HKU10-03]
gi|323465045|gb|ADX77198.1| SsrA-binding protein [Staphylococcus pseudintermedius ED99]
Length = 154
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA ++ EI+L
Sbjct: 3 KKSGKGTLAENRKARHDYNIEDTIEAGIALQGTEIKSIRRGSANLKDSYAQVKHGEIFLH 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I Y + NRFNH P R RKLLL KREI +L R G +++P+K+Y G K+
Sbjct: 63 NMHIAPYEEGNRFNHDPLRVRKLLLHKREILKLGERTREIGYSIIPLKLYLK-HGNCKVL 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +A+GKK YDKR++ K++ R R +++
Sbjct: 122 LGVARGKKKYDKRQSLKEKAVKRDMDRAMKQK 153
>gi|329896057|ref|ZP_08271293.1| tmRNA-binding protein SmpB [gamma proteobacterium IMCC3088]
gi|328922017|gb|EGG29381.1| tmRNA-binding protein SmpB [gamma proteobacterium IMCC3088]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + ++ N++A +++ ++ FEAGI LTG EVKSLR KV ++DSY +N
Sbjct: 1 MSKK-KPKQSSNQIASNKRASFDFKLLDDFEAGISLTGWEVKSLRAGKVQLTDSYVIMKN 59
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L S I + F P R RKLLL K+E+ R+ AA+++ G T V +Y+
Sbjct: 60 GEAYLLGSQITPLATASTHFVTDPTRTRKLLLHKKELARILAAIQQKGQTCVCTGLYWKG 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K +ALAQGK+ +DKR+ K+RDW+RQK RI+RE+
Sbjct: 120 H-LVKAKIALAQGKQAHDKRDATKERDWNRQKQRIVREN 157
>gi|327314529|ref|YP_004329966.1| SsrA-binding protein [Prevotella denticola F0289]
gi|326945660|gb|AEA21545.1| SsrA-binding protein [Prevotella denticola F0289]
Length = 159
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + + K V N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+
Sbjct: 1 MNKEQQERRRKSPVQIRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCYIN 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH RR RKLLL+++EI L A + G T++P I+ +
Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEARRPRKLLLTRKEIRNLEAESKTPGFTIIPTLIFIDE 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK YDKR+T K+++ R+ R + +
Sbjct: 121 HGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRARKHY 159
>gi|124266809|ref|YP_001020813.1| SsrA-binding protein [Methylibium petroleiphilum PM1]
gi|166223226|sp|A2SG89|SSRP_METPP RecName: Full=SsrA-binding protein
gi|124259584|gb|ABM94578.1| SsrA-binding protein [Methylibium petroleiphilum PM1]
Length = 155
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++DN+KAR+NY I FEAG+VL G EVK++R +V ++D Y ++ E++L I
Sbjct: 3 IADNKKARFNYTIEEQFEAGMVLEGWEVKAIRAGQVQLTDGYVVVKDGELFLIGCRINPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + R +KLL+ K EI RL V + G TLVP+ +++ G K D+ALA+G
Sbjct: 63 RTASTHVHPQADRTKKLLMKKDEIRRLVGKVEQKGYTLVPLNLHYKG-GRVKADIALAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K +DKRETEKKRDW+R+K +++R
Sbjct: 122 KDLHDKRETEKKRDWEREKGQLMRHK 147
>gi|254458676|ref|ZP_05072100.1| SsrA-binding protein [Campylobacterales bacterium GD 1]
gi|207084442|gb|EDZ61730.1| SsrA-binding protein [Campylobacterales bacterium GD 1]
Length = 150
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA ++Y + FEAG+VL G+EVK +R +VNI DS+ F E +L N++I
Sbjct: 4 TIAKNKKAYFDYFLEEKFEAGLVLQGSEVKGIRAKRVNIKDSFIRFVQGEAFLFNAHIGR 63
Query: 73 YLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ + + R +RKLLL K+++ + AV RDG T+VP++IYFN + L KI +A+A+
Sbjct: 64 LETTHHYYTHEERGSRKLLLHKKQLVSMKKAVDRDGYTIVPLQIYFNDRNLVKIQIAIAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK+ +DKRE K++D R R ++++
Sbjct: 124 GKQLHDKREDLKQKDMKRDIARAMKDY 150
>gi|297626163|ref|YP_003687926.1| SmpB SsrA-binding protein [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296921928|emb|CBL56488.1| SmpB SsrA-binding protein [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K+++ N+KA ++Y I EAGIVLTGTEVKSLR + ++ D++AT +++E+WL N+
Sbjct: 5 KGEKMIARNKKALHDYSIGERLEAGIVLTGTEVKSLRDGRASLVDAFATIDDNEVWLRNA 64
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRD-GMTLVPMKIYFNAKGLAKIDL 127
IPEY NH R RKLLL ++EI RL A+ G TLVP+ IYF G AK+++
Sbjct: 65 NIPEYTLGTWRNHSAMRKRKLLLHRQEIKRLERALGDSGGRTLVPLSIYFKD-GNAKVEI 123
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+ GK+ +DKR+T ++RD +R+ R L + N
Sbjct: 124 AVGTGKREWDKRQTIRERDMNREAERDLADRN 155
>gi|282859673|ref|ZP_06268775.1| SsrA-binding protein [Prevotella bivia JCVIHMP010]
gi|282587591|gb|EFB92794.1| SsrA-binding protein [Prevotella bivia JCVIHMP010]
Length = 159
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS + + K +V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ D++
Sbjct: 1 MSNEKQNKKRKALVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDAFCVIN 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N EIW+ I Y + NH RR+RKLLL+K+EI L A + G T++P ++ +
Sbjct: 61 NGEIWVQGMNISPYFYGSYANHEARRSRKLLLNKKEIRILEADSQSPGYTIIPTLVFIDD 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+GKK YDKR+T K ++ R+ R+ + +
Sbjct: 121 NGRAKVNIALAKGKKEYDKRQTLKAKEDKREMDRVRKHY 159
>gi|332179695|gb|AEE15384.1| SsrA-binding protein [Thermodesulfobium narugense DSM 14796]
Length = 148
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/140 (50%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ +NRKARY Y I+ + E GI L GTEVKSLR+ K + S SY E E+W+ + +I Y
Sbjct: 7 IIENRKARYEYEILETLETGIELKGTEVKSLRLGKASFSGSYCQVERGELWIYDFHISPY 66
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
Q N FN P+R R+LL + EI RLY AV+R G+TL+P+K+Y+ +G+AK+ + LA+GK
Sbjct: 67 EQGNIFNLDPKRKRRLLAHRSEILRLYNAVKRKGLTLIPLKLYWK-RGIAKVQVGLARGK 125
Query: 134 KNYDKRETEKKRDWDRQKHR 153
K YDKRET KKR +++ R
Sbjct: 126 KLYDKRETIKKRTMEKESRR 145
>gi|327452383|gb|EGE99037.1| SsrA-binding protein [Propionibacterium acnes HL087PA3]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
+VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+T ++RD R+ R+L
Sbjct: 125 VGTGKRDWDKRQTIRERDAKREAQRVLANR 154
>gi|163749581|ref|ZP_02156828.1| SsrA-binding protein [Shewanella benthica KT99]
gi|161330691|gb|EDQ01628.1| SsrA-binding protein [Shewanella benthica KT99]
Length = 165
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY + E +L I
Sbjct: 16 IARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFMRDGEAFLFGCTIAPL 75
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R+RKLLL ++E+ +L V R G ++VP+ +Y+ KI++ L +G
Sbjct: 76 NTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKG 135
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRE K R+W +K R +++
Sbjct: 136 KKEHDKREDTKDREWQIEKSRTMKK 160
>gi|270290681|ref|ZP_06196905.1| SsrA-binding protein [Pediococcus acidilactici 7_4]
gi|304386205|ref|ZP_07368538.1| SsrA-binding protein [Pediococcus acidilactici DSM 20284]
gi|270280741|gb|EFA26575.1| SsrA-binding protein [Pediococcus acidilactici 7_4]
gi|304327562|gb|EFL94789.1| SsrA-binding protein [Pediococcus acidilactici DSM 20284]
Length = 155
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ N+KAR++Y I+ + EAGI LTGTE+KS+R ++ + D + +
Sbjct: 1 MAKKPQVKDQA--LAQNKKARHDYSILSTMEAGIALTGTEIKSVRERRITLRDGFVQIRH 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E L N I EYLQ N+FNH P RNRKLLL K+EI +L A + G+T+VP+K+Y
Sbjct: 59 GEAILMNVQISEYLQGNQFNHDPLRNRKLLLHKKEIQKLQEASQNKGITIVPLKVYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ + +A+GK YDKRET KKRD R+ R L+
Sbjct: 118 GFAKVLIGVAKGKHEYDKRETLKKRDQQREIERALKNR 155
>gi|328950727|ref|YP_004368062.1| SsrA-binding protein [Marinithermus hydrothermalis DSM 14884]
gi|328451051|gb|AEB11952.1| SsrA-binding protein [Marinithermus hydrothermalis DSM 14884]
Length = 142
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/138 (50%), Positives = 99/138 (71%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
+NRKAR++Y I+ ++EAGI L GTEVKS+R KV+ + S+A F+ E+WL N +I Y +
Sbjct: 3 ENRKARHDYEILETYEAGIALKGTEVKSIRAGKVDFTGSFARFDGGELWLENLFIAPYEK 62
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ NH PRR RKLLL K E++RL V + G+TLVP+KIYFN +G AK+ L LA+GKK
Sbjct: 63 GSYTNHDPRRRRKLLLHKHELNRLRGRVEQRGLTLVPLKIYFNERGYAKLLLGLARGKKA 122
Query: 136 YDKRETEKKRDWDRQKHR 153
Y K+E +K+R +R+ +
Sbjct: 123 YQKKEDDKRRAIEREMEK 140
>gi|291537515|emb|CBL10627.1| SsrA-binding protein [Roseburia intestinalis M50/1]
Length = 155
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA +++ + +EAGI L GTEVKS+R+ K +I +++ EN
Sbjct: 1 MAKTEK-----KLIANNKKAYHDFFLEERYEAGIELHGTEVKSMRMGKCSIKEAFIRIEN 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ + ++ Y + N FN P R +KLL+ K EI +L + G TLVP+++YF
Sbjct: 56 GEVIIYGMHVSPYEKGNIFNRDPLRPKKLLMHKSEIRKLVGKIAEKGYTLVPVEVYFKGS 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+D+ALA+GKK YDKR+ K+D R+ R + N
Sbjct: 116 -LVKVDIALAKGKKQYDKRQDIAKKDMRREAERDFKVKN 153
>gi|222152693|ref|YP_002561869.1| SsrA-binding protein [Streptococcus uberis 0140J]
gi|254778383|sp|B9DTZ7|SSRP_STRU0 RecName: Full=SsrA-binding protein
gi|222113505|emb|CAR41271.1| SsrA-binding protein [Streptococcus uberis 0140J]
Length = 155
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+++ N+KA ++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 7 NLLAQNKKASHDYHIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLMNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI+ L ++ GMTL+P+K+Y G AKI L LA+
Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREINHLANELKGTGMTLIPLKVYLKD-GFAKILLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R+++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIKRVMKSIN 153
>gi|157374546|ref|YP_001473146.1| SsrA-binding protein [Shewanella sediminis HAW-EB3]
gi|189046847|sp|A8FT45|SSRP_SHESH RecName: Full=SsrA-binding protein
gi|157316920|gb|ABV36018.1| SsrA-binding protein [Shewanella sediminis HAW-EB3]
Length = 164
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY + E +L I
Sbjct: 16 IARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFMRDGEAFLFGCTIAPL 75
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R+RKLLL ++E+ +L V R G ++VP+ +Y+ KI++ L +G
Sbjct: 76 NTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKG 135
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+ K R+W +K R +++
Sbjct: 136 KKEHDKRDDTKDREWQIEKARTMKK 160
>gi|85711975|ref|ZP_01043029.1| SmpB [Idiomarina baltica OS145]
gi|85694161|gb|EAQ32105.1| SmpB [Idiomarina baltica OS145]
Length = 159
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + ++ N+KAR+ Y + FEAGI L G EVKS+R KVNI DSY +N
Sbjct: 1 MSKK-KSQTNSSTIALNKKARHEYFLEEKFEAGISLQGWEVKSIREGKVNIRDSYVIMKN 59
Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I Q ++ P R+RKLLL K+E+ +L A R+G +V +Y+
Sbjct: 60 GEAYLLGAEIQPLTQASSHVYCEPDRSRKLLLKKKELDKLIGASEREGFAVVATAMYWK- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K++ LA+GKK++DKR+T K+RDW RQK RIL+
Sbjct: 119 HCWVKLECYLAKGKKSHDKRDTVKERDWQRQKSRILKH 156
>gi|89901323|ref|YP_523794.1| SsrA-binding protein [Rhodoferax ferrireducens T118]
gi|122478949|sp|Q21VE0|SSRP_RHOFD RecName: Full=SsrA-binding protein
gi|89346060|gb|ABD70263.1| SsrA-binding protein [Rhodoferax ferrireducens T118]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K ++DN+KA YNY FEAG+VL G EVKSLR KV I+D Y N
Sbjct: 1 MAKKPDTASR---IADNKKAAYNYFFEERFEAGLVLEGWEVKSLREGKVQITDGYVVIRN 57
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+++ I + + +R +KLL+ K EI RL V + G TLVP+ +++ A
Sbjct: 58 GELFVIGLQINPLGTASTHISPDKQRTKKLLMHKEEIKRLIGKVEQKGYTLVPLNLHWKA 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K ++ALA+GK +DKR+T K R+ R+ R ++ +
Sbjct: 118 -GKIKCEIALAKGKAEHDKRDTIKDREGKREVERAMKTN 155
>gi|54307893|ref|YP_128913.1| SsrA-binding protein [Photobacterium profundum SS9]
gi|90412542|ref|ZP_01220545.1| SsrA-binding protein [Photobacterium profundum 3TCK]
gi|61216521|sp|Q6LUB4|SSRP_PHOPR RecName: Full=SsrA-binding protein
gi|46912319|emb|CAG19111.1| putative small protein B,tmRNA-binding protein [Photobacterium
profundum SS9]
gi|90326579|gb|EAS42985.1| SsrA-binding protein [Photobacterium profundum 3TCK]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + N ++ NR AR+ + I +EAG+ L G EVK++R KVNI++SY + E
Sbjct: 1 MAKKPNKSDNTIAKNRTARHEFAIQDDYEAGLQLQGWEVKAIRNGKVNIAESYVFLRDGE 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+++ I + P R RKLLL+++EI +L AV R+G T+V + +Y+ A
Sbjct: 61 AFISGVTITPLNAASTHVVADPTRTRKLLLNRKEIDKLLGAVNREGQTIVALSMYWKAS- 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + A+GKK +DKR K RDW R K RI++
Sbjct: 120 WVKLKIGTARGKKLHDKRADSKSRDWARDKQRIMKH 155
>gi|313158959|gb|EFR58336.1| SsrA-binding protein [Alistipes sp. HGB5]
Length = 164
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 98/151 (64%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ K + N++A ++Y I+ + AG+VL GTE+KS+R + +++DS+ F+ E+W+
Sbjct: 12 SEQKNINIRNKRATFDYEILEEYVAGVVLVGTEIKSIRAGRASLTDSFCYFDRGELWIRG 71
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I EY NH PRR+RKLLL++RE+ +L A + G+T+V ++++ N +GL KI +
Sbjct: 72 VNIAEYAWGTCNNHTPRRDRKLLLNRRELDKLQRAGQDKGLTIVGLRMFLNERGLVKIVI 131
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+G+K YDKRE K+ D R+ + ++ +
Sbjct: 132 GLARGRKTYDKREYLKENDAKREIDKAMKNY 162
>gi|157825715|ref|YP_001493435.1| SsrA-binding protein [Rickettsia akari str. Hartford]
gi|166223444|sp|A8GNF2|SSRP_RICAH RecName: Full=SsrA-binding protein
gi|157799673|gb|ABV74927.1| SsrA-binding protein [Rickettsia akari str. Hartford]
Length = 152
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 101/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN + K++L +A
Sbjct: 65 AEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|225870905|ref|YP_002746852.1| SsrA-binding protein [Streptococcus equi subsp. equi 4047]
gi|254778380|sp|C0MAA1|SSRP_STRE4 RecName: Full=SsrA-binding protein
gi|225700309|emb|CAW94590.1| SsrA-binding protein [Streptococcus equi subsp. equi 4047]
Length = 155
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
V++ ++KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I
Sbjct: 7 NVLAQHKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI L ++ GMTL+P+K+Y G AK+ + LA+
Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREIQHLADELKGTGMTLIPLKVYLKD-GFAKVLIGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ DR R+++ N
Sbjct: 126 GKHDYDKRESIKRREQDRDIRRVMKSVN 153
>gi|294787961|ref|ZP_06753205.1| SsrA-binding protein [Simonsiella muelleri ATCC 29453]
gi|294484254|gb|EFG31937.1| SsrA-binding protein [Simonsiella muelleri ATCC 29453]
Length = 148
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 57/145 (39%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NRKA ++Y I +AG+VL G EVK++R +V + +SY ++ D +L + +I
Sbjct: 3 IANNRKAFHDYFIEEQIQAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVSCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+N P R RKLLL++REI++L R G T+VP+ ++F+ +G K+D+ LA+G
Sbjct: 63 PTASNHVKPDPIRPRKLLLNQREINKLIGKTERAGYTIVPLNMHFH-RGKIKMDIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKRE+ K+ DW R+K R+++
Sbjct: 122 KKLHDKRESSKEADWKREKQRLMKH 146
>gi|229823087|ref|ZP_04449156.1| hypothetical protein GCWU000282_00382 [Catonella morbi ATCC 51271]
gi|229787253|gb|EEP23367.1| hypothetical protein GCWU000282_00382 [Catonella morbi ATCC 51271]
Length = 150
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
K ++ NRK R++Y I+ ++EAG+VLTGTE+KS+R K+N+ D + + + E WL
Sbjct: 2 SQDKPLAQNRKVRHDYEILETYEAGMVLTGTEIKSIRKGKMNLKDGFISIRDGEAWLKQV 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y N FNH P R+RKLLL K+EI L+ V+++ MTLVP+K+Y +G AK+
Sbjct: 62 HISPYDHGNIFNHDPERDRKLLLHKKEIQTLHREVQQNRMTLVPLKVYL-VRGRAKLLFG 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK YDKR K + R R L+
Sbjct: 121 LARGKNKYDKRHALKDQQAKRDIDRALKIR 150
>gi|257413939|ref|ZP_04744728.2| SsrA-binding protein [Roseburia intestinalis L1-82]
gi|257201785|gb|EEV00070.1| SsrA-binding protein [Roseburia intestinalis L1-82]
Length = 156
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA +++ + +EAGI L GTEVKS+R+ K +I +++ EN
Sbjct: 2 MAKTEK-----KLIANNKKAYHDFFLEERYEAGIELHGTEVKSMRMGKCSIKEAFIRIEN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ + ++ Y + N FN P R +KLL+ K EI +L + G TLVP+++YF
Sbjct: 57 GEVIIYGMHVSPYEKGNIFNRDPLRPKKLLMHKSEIRKLVGKIAEKGYTLVPVEVYFKGS 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+D+ALA+GKK YDKR+ K+D R+ R + N
Sbjct: 117 -LVKVDIALAKGKKQYDKRQDIAKKDMRREAERDFKVKN 154
>gi|269958423|ref|YP_003328210.1| SsrA-binding protein [Anaplasma centrale str. Israel]
gi|269848252|gb|ACZ48896.1| SsrA-binding protein [Anaplasma centrale str. Israel]
Length = 149
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 109/145 (75%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
VV++NRKAR++Y +++ ++AG+VL G+EVKSLR KV++ D+Y ++ E+W+ N +I E
Sbjct: 3 VVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVSMGDAYVLEKDMELWIHNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y +++R NH P R RKLLL KREIH++ ++ G+T+VP+ I+FN KG+AKI +A+ +G
Sbjct: 63 YNRSDRKNHKPLRVRKLLLRKREIHKIAGNMKVSGLTVVPLMIFFNDKGIAKIKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K RDW R+K RI R
Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147
>gi|313891271|ref|ZP_07824889.1| SsrA-binding protein [Streptococcus pseudoporcinus SPIN 20026]
gi|313120338|gb|EFR43459.1| SsrA-binding protein [Streptococcus pseudoporcinus SPIN 20026]
Length = 155
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+++ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D +A +++E WL N +I
Sbjct: 7 NLLAQNKKARHDYTIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKHNEAWLVNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL KREI L ++ GMTL+P+K+Y G AK+ L LA+
Sbjct: 67 PFEQGNIWNQDPDRTRKLLLKKREIQHLGNELKGSGMTLIPLKVYLKD-GFAKVLLGLAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+++ DR R+++ N
Sbjct: 126 GKHDYDKRESLKRKEQDRDIRRVMKSIN 153
>gi|302873638|ref|YP_003842271.1| SsrA-binding protein [Clostridium cellulovorans 743B]
gi|307688181|ref|ZP_07630627.1| SsrA-binding protein [Clostridium cellulovorans 743B]
gi|302576495|gb|ADL50507.1| SsrA-binding protein [Clostridium cellulovorans 743B]
Length = 156
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ N ++DNRKA ++Y I+ S+EAGI L GTEVKS+R + N+ DSY N
Sbjct: 1 MAKTKEPN----TLADNRKAFHDYFIIESYEAGIELKGTEVKSIRNGRANLKDSYGEIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I Y Q N FN P R RKLLL K EI++L + + G +LVP+ +Y K
Sbjct: 57 GELFVRNMHISPYEQGNIFNVNPLRERKLLLHKAEINKLNGFLTQQGYSLVPLSLYLK-K 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++A+ +GKKNYDKRE +R R+ + ++
Sbjct: 116 GRVKVNIAVVKGKKNYDKREAMLERTVKREIEKEFKDK 153
>gi|312885414|ref|ZP_07745055.1| SsrA-binding protein [Mucilaginibacter paludis DSM 18603]
gi|311302112|gb|EFQ79140.1| SsrA-binding protein [Mucilaginibacter paludis DSM 18603]
Length = 157
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 101/157 (64%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + + + + N+KA + YHI+ +EAGI L GTE+KS+R K N++DS+ TF
Sbjct: 1 MHQERKRTMSQDLYIKNKKAYFEYHILDKYEAGIKLLGTEIKSIREGKANLNDSFCTFIG 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I EY + +NH +R+R LLL K+E+ +L G+T+VP+ ++ NA+
Sbjct: 61 TELYVRNLHIAEYSHGSFYNHEQKRDRVLLLHKKELRKLQTRSEEKGLTIVPLAMFVNAR 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G AK+++ LAQGKK +DKRET K+RD + R L+
Sbjct: 121 GFAKLEIGLAQGKKTFDKRETMKERDSKIEMDRALKR 157
>gi|70727105|ref|YP_254019.1| SsrA-binding protein [Staphylococcus haemolyticus JCSC1435]
gi|123659647|sp|Q4L4L2|SSRP_STAHJ RecName: Full=SsrA-binding protein
gi|68447829|dbj|BAE05413.1| ssrA-binding protein [Staphylococcus haemolyticus JCSC1435]
Length = 156
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA +
Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEDTIEAGIALKGTEIKSIRRGSANLKDSYAQVKR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N +I Y + NRFNH P R+RKLLL K+EI +L R G +L+P+K+Y
Sbjct: 59 GEMFINNMHIAPYEEGNRFNHDPLRSRKLLLHKKEIIKLGERTREIGYSLIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKK +DKR+ K + R R +++
Sbjct: 118 GQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKDR 155
>gi|300361309|ref|ZP_07057486.1| SsrA-binding protein [Lactobacillus gasseri JV-V03]
gi|300353928|gb|EFJ69799.1| SsrA-binding protein [Lactobacillus gasseri JV-V03]
Length = 151
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 4/151 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N
Sbjct: 1 MKQKAD---NLIAQNKKANHDYFIKDTLEAGIALTGTEIKSVRARRINLRDGYVQIINGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL KREI RL + GMT++P+K+Y G
Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKREIARLAGIQAQQGMTIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ + + QGKK YDKR+T KKRD DR+ HR
Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147
>gi|314933093|ref|ZP_07840459.1| SsrA-binding protein [Staphylococcus caprae C87]
gi|313654412|gb|EFS18168.1| SsrA-binding protein [Staphylococcus caprae C87]
Length = 156
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA +
Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEATVEAGIALQGTEIKSIRSGSANLKDSYAQVKR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + NRFNH P R+RKLLL KREI +L R G +L+P+K+Y
Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREIGYSLIPLKLYLK-H 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+ L +A+GKK +DKR+ K + R R ++
Sbjct: 118 GQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKAR 155
>gi|307721683|ref|YP_003892823.1| SsrA-binding protein [Sulfurimonas autotrophica DSM 16294]
gi|306979776|gb|ADN09811.1| SsrA-binding protein [Sulfurimonas autotrophica DSM 16294]
Length = 150
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 58/147 (39%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA ++Y I FEAG+VL+G+EVK +R +VN+ DS+ F N E +L N++I
Sbjct: 4 TIAKNKKAYHDYFIEEKFEAGLVLSGSEVKGIRAHRVNLKDSFIRFVNGEAFLFNAHIGR 63
Query: 73 YLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ + + R +RKLLL K+E+ ++ AV RDG T+VP+++YFN + +AK+ +A+A+
Sbjct: 64 LETTHHYYGHEERGSRKLLLHKKELQKMQKAVTRDGYTIVPLQLYFNKRNIAKLQIAIAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK +DKR K++D R R ++++
Sbjct: 124 GKLLHDKRNDLKEKDQKRDIQRAMKDY 150
>gi|306819857|ref|ZP_07453511.1| SsrA-binding protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304552104|gb|EFM40041.1| SsrA-binding protein [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 153
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/150 (48%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K V+ NRKA YNY I FEAGI L GTEVKS+R K+NI+D YA+ +N E L +
Sbjct: 2 GIKTVAKNRKASYNYDIKERFEAGIQLKGTEVKSIRKGKINITDGYASIDNGECLLKQVH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y Q N FN P R RKLLL K+EI+ L + G +L+P+ +YF G K+++ L
Sbjct: 62 ISPYEQGNIFNVDPMRVRKLLLHKKEINYLLGQTMQKGFSLIPLSVYFKD-GKVKVEIGL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
QGKKNYDKR KR+ D + R ++E N
Sbjct: 121 CQGKKNYDKRHDIAKRESDIRIKRAIKEFN 150
>gi|189460375|ref|ZP_03009160.1| hypothetical protein BACCOP_01012 [Bacteroides coprocola DSM 17136]
gi|189432927|gb|EDV01912.1| hypothetical protein BACCOP_01012 [Bacteroides coprocola DSM 17136]
Length = 152
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ N + N++A ++Y V ++ AGIVLTGTE+KS+R K ++ D++ F E+W+
Sbjct: 2 KTNAG-NINIKNKRASFDYEFVDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWV 60
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY + NH RR+RKLLL+K+E+ +L G T+VP ++Y N KGLAK+
Sbjct: 61 KNMHIAEYFYGSYNNHSARRDRKLLLTKKELRKLERTSAEPGFTIVPTRLYINEKGLAKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ALA+GKK YDKR+T K+++ R R+ +
Sbjct: 121 VIALAKGKKQYDKRQTLKEKEDKRMMDRMFKR 152
>gi|225620957|ref|YP_002722215.1| SsrA-binding protein [Brachyspira hyodysenteriae WA1]
gi|225215777|gb|ACN84511.1| SsrA-binding protein [Brachyspira hyodysenteriae WA1]
Length = 161
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 77/162 (47%), Positives = 108/162 (66%), Gaps = 6/162 (3%)
Query: 1 MSLKSRGNPPKKVVS-----DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55
M+ K +S N+KA +NY +V FEAGIVL GTEVKSLR VN+SDSY
Sbjct: 1 MASKKDKKSGSNTISSGEIVKNKKALFNYELVEKFEAGIVLLGTEVKSLRERSVNMSDSY 60
Query: 56 ATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115
A+F+ E+++ N +I Y NR NH P R RKLL+ KRE+ RLY ++ G+TL+P+K+
Sbjct: 61 ASFKKGELFIVNMHISPYHFGNRNNHEPLRERKLLMKKRELRRLYGKIKEQGLTLIPVKL 120
Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
YF+ +G K++LALA+GKK +DKRET K++ DR+ R ++
Sbjct: 121 YFS-RGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIKR 161
>gi|261879494|ref|ZP_06005921.1| SsrA-binding protein [Prevotella bergensis DSM 17361]
gi|270333866|gb|EFA44652.1| SsrA-binding protein [Prevotella bergensis DSM 17361]
Length = 159
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 59/159 (37%), Positives = 98/159 (61%), Gaps = 1/159 (0%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ KS V N+KA + Y+ + ++ AGIVLTGTE+KS+R+ K ++ D++
Sbjct: 1 MNKDKSGTRKKNSVQIRNKKASFEYYFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYIN 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N EIW+ + Y + NH +R+RKLLL+K+EI L + G T+VP ++ +
Sbjct: 61 NGEIWVKGMNVSPYFYGSYSNHEAKRDRKLLLTKKEIRTLTEDTKAPGFTIVPTLMFIDD 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+++ALA+GKK +DKR+T K+++ R+ R ++ +
Sbjct: 121 NGRAKVNIALARGKKEFDKRQTIKEKEDRREMDRAMKRY 159
>gi|291286218|ref|YP_003503034.1| SsrA-binding protein [Denitrovibrio acetiphilus DSM 12809]
gi|290883378|gb|ADD67078.1| SsrA-binding protein [Denitrovibrio acetiphilus DSM 12809]
Length = 147
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV + N+KA ++Y I+ +FE G+ LTGTEVKS++ S+V++ +++ +E++L NS++P
Sbjct: 2 KVFAKNKKAFFDYEILETFETGVQLTGTEVKSIKDSRVSLKEAFVKVIGNEVFLVNSHVP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EYLQ NR NH P R+RKLL+ +++I RL ++ G+TLVP+KIY + L K+++ALA+
Sbjct: 62 EYLQGNRNNHVPTRSRKLLMRRKQIDRLIGKIKEAGLTLVPLKIYQKDR-LIKLEIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKR+ K+RD R+ R L+
Sbjct: 121 GKKTHDKRQVLKERDLQREMGRELK 145
>gi|34540318|ref|NP_904797.1| SsrA-binding protein [Porphyromonas gingivalis W83]
gi|39932260|sp|Q7MWT5|SSRP_PORGI RecName: Full=SsrA-binding protein
gi|34396630|gb|AAQ65696.1| SsrA-binding protein [Porphyromonas gingivalis W83]
Length = 153
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 99/152 (65%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ K ++ N++A ++Y I+ + AGIVL GTE+KSLR+ K + D+Y F E+W+
Sbjct: 2 KEKIQKNILIKNKRATFDYEILDVYTAGIVLVGTEIKSLRLGKGGLVDTYCYFHRGELWV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N YI EY NH RR+RKLLL+++E+ +L A + G T+VP+K++ N +GLAK+
Sbjct: 62 KNMYIAEYFYGTYNNHVARRDRKLLLNRKELRKLEEASKSMGTTIVPLKLFINERGLAKL 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ LA+GKK YDKR + K+RD R+ R L+
Sbjct: 122 QIGLARGKKQYDKRASIKERDDRREMDRALKR 153
>gi|291540044|emb|CBL13155.1| SsrA-binding protein [Roseburia intestinalis XB6B4]
Length = 156
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + K++++N+KA +++ + +EAGI L GTEVKS+R+ K +I +++ EN
Sbjct: 2 MAKTEK-----KLIANNKKAYHDFFLEERYEAGIELHGTEVKSMRMGKCSIKEAFIRIEN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ + ++ Y + N FN P R +KLL+ K EI +L + G TLVP+++YF
Sbjct: 57 GEVIIYGMHVSPYEKGNIFNRDPLRPKKLLMHKSEIRKLIGKIAEKGYTLVPVEVYFKGS 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K+D+ALA+GKK YDKR+ K+D R+ R + N
Sbjct: 117 -LVKVDIALAKGKKQYDKRQDIAKKDMRREAERDFKVKN 154
>gi|229825462|ref|ZP_04451531.1| hypothetical protein GCWU000182_00822 [Abiotrophia defectiva ATCC
49176]
gi|229790025|gb|EEP26139.1| hypothetical protein GCWU000182_00822 [Abiotrophia defectiva ATCC
49176]
Length = 156
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWL 65
K+V+ N+KA ++Y I +E GI L GTEVKS+R+ KV+I +SY +N E+ +
Sbjct: 2 SKDNYKLVAQNKKATFDYFIEERYETGITLVGTEVKSVRMGKVSIKESYVQVDKNGEVII 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+I Y + N FN P R RKLL+ + EI++L V+ G TLVP+K+Y L K+
Sbjct: 62 IGMHISPYEKGNIFNKDPLRTRKLLMHRAEINKLVGKVKTAGYTLVPLKVYLKGS-LVKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
++ LA+GKKNYDKR+ +K+D R+ R + N
Sbjct: 121 EIGLARGKKNYDKRQDIQKKDQRREAERDYKVKN 154
>gi|260592458|ref|ZP_05857916.1| SsrA-binding protein [Prevotella veroralis F0319]
gi|260535504|gb|EEX18121.1| SsrA-binding protein [Prevotella veroralis F0319]
Length = 159
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 89/144 (61%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+ E+W+ I Y
Sbjct: 16 IRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCYINKGEMWVQGMNISPYF 75
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ NH +R RKLLL+K+EI L A + G T++P I+ + G AK+D+ALA+GKK
Sbjct: 76 YGSYANHEAKRPRKLLLTKKEIRNLEAESKTPGFTIIPTLIFIDGNGRAKVDIALAKGKK 135
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKR+T K+++ R+ R + +
Sbjct: 136 EYDKRQTLKEKEDRREMDRARKHY 159
>gi|50842835|ref|YP_056062.1| SsrA-binding protein [Propionibacterium acnes KPA171202]
gi|289425235|ref|ZP_06427012.1| SsrA-binding protein [Propionibacterium acnes SK187]
gi|289426938|ref|ZP_06428662.1| SsrA-binding protein [Propionibacterium acnes J165]
gi|295130887|ref|YP_003581550.1| SsrA-binding protein [Propionibacterium acnes SK137]
gi|61216486|sp|Q6A811|SSRP_PROAC RecName: Full=SsrA-binding protein
gi|50840437|gb|AAT83104.1| SsrA-binding protein [Propionibacterium acnes KPA171202]
gi|289154213|gb|EFD02901.1| SsrA-binding protein [Propionibacterium acnes SK187]
gi|289159878|gb|EFD08058.1| SsrA-binding protein [Propionibacterium acnes J165]
gi|291376895|gb|ADE00750.1| SsrA-binding protein [Propionibacterium acnes SK137]
gi|313771876|gb|EFS37842.1| SsrA-binding protein [Propionibacterium acnes HL074PA1]
gi|313807109|gb|EFS45604.1| SsrA-binding protein [Propionibacterium acnes HL087PA2]
gi|313819305|gb|EFS57019.1| SsrA-binding protein [Propionibacterium acnes HL046PA2]
gi|313819954|gb|EFS57668.1| SsrA-binding protein [Propionibacterium acnes HL036PA1]
gi|313823253|gb|EFS60967.1| SsrA-binding protein [Propionibacterium acnes HL036PA2]
gi|313824959|gb|EFS62673.1| SsrA-binding protein [Propionibacterium acnes HL063PA1]
gi|313829920|gb|EFS67634.1| SsrA-binding protein [Propionibacterium acnes HL007PA1]
gi|313833075|gb|EFS70789.1| SsrA-binding protein [Propionibacterium acnes HL056PA1]
gi|314924793|gb|EFS88624.1| SsrA-binding protein [Propionibacterium acnes HL036PA3]
gi|314960649|gb|EFT04751.1| SsrA-binding protein [Propionibacterium acnes HL002PA2]
gi|314972911|gb|EFT17008.1| SsrA-binding protein [Propionibacterium acnes HL053PA1]
gi|314975665|gb|EFT19760.1| SsrA-binding protein [Propionibacterium acnes HL045PA1]
gi|314978049|gb|EFT22143.1| SsrA-binding protein [Propionibacterium acnes HL072PA2]
gi|314984151|gb|EFT28243.1| SsrA-binding protein [Propionibacterium acnes HL005PA1]
gi|314986210|gb|EFT30302.1| SsrA-binding protein [Propionibacterium acnes HL005PA2]
gi|314989574|gb|EFT33665.1| SsrA-binding protein [Propionibacterium acnes HL005PA3]
gi|315080947|gb|EFT52923.1| SsrA-binding protein [Propionibacterium acnes HL078PA1]
gi|315084870|gb|EFT56846.1| SsrA-binding protein [Propionibacterium acnes HL027PA2]
gi|315086043|gb|EFT58019.1| SsrA-binding protein [Propionibacterium acnes HL002PA3]
gi|315088238|gb|EFT60214.1| SsrA-binding protein [Propionibacterium acnes HL072PA1]
gi|315095724|gb|EFT67700.1| SsrA-binding protein [Propionibacterium acnes HL038PA1]
gi|315105994|gb|EFT77970.1| SsrA-binding protein [Propionibacterium acnes HL030PA1]
gi|327327938|gb|EGE69712.1| SsrA-binding protein [Propionibacterium acnes HL096PA3]
gi|327330075|gb|EGE71828.1| SsrA-binding protein [Propionibacterium acnes HL096PA2]
gi|327442690|gb|EGE89344.1| SsrA-binding protein [Propionibacterium acnes HL043PA1]
gi|327443911|gb|EGE90565.1| SsrA-binding protein [Propionibacterium acnes HL043PA2]
gi|327443979|gb|EGE90633.1| SsrA-binding protein [Propionibacterium acnes HL013PA2]
gi|328754959|gb|EGF68575.1| SsrA-binding protein [Propionibacterium acnes HL020PA1]
gi|328761403|gb|EGF74929.1| SsrA-binding protein [Propionibacterium acnes HL099PA1]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
+VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154
>gi|331004354|ref|ZP_08327828.1| SsrA-binding protein [Lachnospiraceae oral taxon 107 str. F0167]
gi|330411158|gb|EGG90575.1| SsrA-binding protein [Lachnospiraceae oral taxon 107 str. F0167]
Length = 153
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K++++N+KA ++Y I+ ++E GI L+GTEVKS+R+ V+I +S+ E E+++ +
Sbjct: 4 GIKIIANNKKAYFDYFILENYETGIELSGTEVKSVRMGHVSIKESWIRIEKGELFIMGMH 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y + N FN P R RKLL+ K+EI +L + G+T+VP+K+Y L K+++ L
Sbjct: 64 INPYEKGNIFNKDPLRVRKLLMHKKEILKLDGKLNEKGLTIVPLKVYLKGS-LVKVEIGL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GKKNYDKRET K+ R+ + ++
Sbjct: 123 AKGKKNYDKRETLAKKTQQREIEKAMKR 150
>gi|314967090|gb|EFT11189.1| SsrA-binding protein [Propionibacterium acnes HL082PA2]
gi|315092705|gb|EFT64681.1| SsrA-binding protein [Propionibacterium acnes HL060PA1]
gi|315103822|gb|EFT75798.1| SsrA-binding protein [Propionibacterium acnes HL050PA2]
gi|327327224|gb|EGE69000.1| SsrA-binding protein [Propionibacterium acnes HL103PA1]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
KVV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVKVVARNRRAAHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154
>gi|329947412|ref|ZP_08294616.1| SsrA-binding protein [Actinomyces sp. oral taxon 170 str. F0386]
gi|328525162|gb|EGF52213.1| SsrA-binding protein [Actinomyces sp. oral taxon 170 str. F0386]
Length = 187
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND- 61
+ K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ +
Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIEIDRYG 77
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL ++IPEYLQ NH PRR RKLLL + E+ RL VR G T+VP+++YF G
Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLEGRVRAKGYTVVPLELYFIG-G 136
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148
AK+++ALA+GK+++DKR+ ++
Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163
>gi|315608008|ref|ZP_07883001.1| SsrA-binding protein [Prevotella buccae ATCC 33574]
gi|315250477|gb|EFU30473.1| SsrA-binding protein [Prevotella buccae ATCC 33574]
Length = 159
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 95/146 (65%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N+KA + Y + ++ AGIVLTGTE+KS+R + ++ D++ N E+WL I
Sbjct: 14 IQIRNKKASFEYAFLDTYTAGIVLTGTEIKSIRQGRASLVDTFCFIHNGEMWLKGMNISP 73
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH +R+RKLLL+KREIH+L A ++ G T+VP ++ + G AK+D+ALA+G
Sbjct: 74 YFYGSFSNHEAKRDRKLLLNKREIHKLQEATKQVGFTIVPTLVFIDDHGRAKVDIALARG 133
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR+T ++++ R+ R ++
Sbjct: 134 KKEFDKRQTIREKEDKREMERAIKRF 159
>gi|313809601|gb|EFS47337.1| SsrA-binding protein [Propionibacterium acnes HL083PA1]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
+VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGELWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154
>gi|239636604|ref|ZP_04677606.1| SsrA-binding protein [Staphylococcus warneri L37603]
gi|239597959|gb|EEQ80454.1| SsrA-binding protein [Staphylococcus warneri L37603]
Length = 154
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G
Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIFKLGDRTREIGYSIIPLKLYLK-HGQ 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGIARGKKKYDKRQALKEKAVKRDMDRAVKAR 153
>gi|254517086|ref|ZP_05129144.1| SsrA-binding protein [gamma proteobacterium NOR5-3]
gi|219674591|gb|EED30959.1| SsrA-binding protein [gamma proteobacterium NOR5-3]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N++AR++YH++ SFEAG+VLTG EVK+LR K ++DSY ++ E +L + I
Sbjct: 13 IVQNKRARFDYHLLESFEAGVVLTGWEVKALRAGKAQLTDSYVLMKDGEAFLLGTQITPL 72
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + P R RKLLL++RE+ R+ AAV G T V K+Y+ L K D+ALAQG
Sbjct: 73 ATASTHYIPDPTRTRKLLLNRRELARILAAVSAKGQTCVCTKLYWKGH-LVKADIALAQG 131
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
K+ +DKR T+K R+W QK RI+R+
Sbjct: 132 KQAHDKRATQKDREWGVQKQRIMRD 156
>gi|190570927|ref|YP_001975285.1| SsrA-binding protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|213019443|ref|ZP_03335249.1| SsrA-binding protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
gi|238064647|sp|B3CPW2|SSRP_WOLPP RecName: Full=SsrA-binding protein
gi|190357199|emb|CAQ54615.1| SsrA-binding protein [Wolbachia endosymbiont of Culex
quinquefasciatus Pel]
gi|212994865|gb|EEB55507.1| SsrA-binding protein [Wolbachia endosymbiont of Culex
quinquefasciatus JHB]
Length = 149
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 77/146 (52%), Positives = 108/146 (73%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V+++NRKAR+ Y I+ FEAG++L +EVKSLR K NISD+Y T + EIWL N +I E
Sbjct: 3 VIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHIAE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y AN+ NH P+R RKLLL K+EI++L ++ G+T+VP+ IYFN KGLAK +A+ +G
Sbjct: 63 YKAANQKNHKPKRERKLLLHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR T K+R+W+R+K R+ + +
Sbjct: 123 KKLYDKRATIKQREWEREKSRLSKNN 148
>gi|51244374|ref|YP_064258.1| SsrA-binding protein [Desulfotalea psychrophila LSv54]
gi|61216494|sp|Q6AQX3|SSRP_DESPS RecName: Full=SsrA-binding protein
gi|50875411|emb|CAG35251.1| probable SsrA-binding protein [Desulfotalea psychrophila LSv54]
Length = 151
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWLTNS 68
K+V N+KA + Y I+ ++EAG+VL+G EVKSLR + N+ D + E L N
Sbjct: 2 GIKIVCKNKKAYHEYEILDTYEAGMVLSGPEVKSLRGGRGNLVDGHVAINARGEAMLYNV 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y+ + P R RKLLL KRE+H+L ++ G+ L+P+KIYF G AKI+L
Sbjct: 62 HISHYMFTSHNPVEPLRVRKLLLHKRELHKLNGKLKEKGLALIPLKIYFIENGKAKIELG 121
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GKK YDKR T K++ R+ R++R
Sbjct: 122 LAKGKKMYDKRATLKEQQGKRELARVMRR 150
>gi|223982918|ref|ZP_03633131.1| hypothetical protein HOLDEFILI_00405 [Holdemania filiformis DSM
12042]
gi|223965117|gb|EEF69416.1| hypothetical protein HOLDEFILI_00405 [Holdemania filiformis DSM
12042]
Length = 151
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K+++ NRKA ++Y + FEAG+VLTGTE+KS+R K D+Y +F + E W+
Sbjct: 2 SGEKIIAVNRKASHDYSLEERFEAGLVLTGTEIKSIRQGKAQFKDAYVSFISGEAWIKEM 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y N+FNH R RKLLL K EI +L V+ G T+VP+K+Y G AK+++A
Sbjct: 62 HIAAYDHGNQFNHDETRERKLLLHKLEIVKLQQKVKLKGYTVVPVKLYLK-NGRAKMEIA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK YDKRE K +D R+ + ++
Sbjct: 121 LAKGKALYDKREDAKMKDAKREMEKAMKAR 150
>gi|325479271|gb|EGC82367.1| SsrA-binding protein [Anaerococcus prevotii ACS-065-V-Col13]
Length = 148
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA ++Y I +EAG+ L G+EVKS++ KV+I +S+ + N E+++ ++
Sbjct: 2 KLLANNKKAYHDYFIEEKYEAGLSLLGSEVKSIKKGKVSIKESFISDRNGEMFIYGMHVT 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y QA + P R R+LLL K+EI++L + G T+VP+KIY GL K++LALA+
Sbjct: 62 PYEQAYEKDIDPTRTRRLLLHKKEINKLIGQKTQAGFTIVPLKIYERD-GLVKLELALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRE+ K +D R+ R L+ +
Sbjct: 121 GKKQFDKRESIKAKDDKRKIDRALKNY 147
>gi|94500145|ref|ZP_01306679.1| SsrA-binding protein [Oceanobacter sp. RED65]
gi|94427718|gb|EAT12694.1| SsrA-binding protein [Oceanobacter sp. RED65]
Length = 161
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M K + + N++AR++YH+ EAG+ L G EVKS+R KV ++DSY
Sbjct: 1 MGKTKKKPKNTSSTICSNKRARHDYHLDNLTEAGLALEGWEVKSIREGKVQLTDSYVIIH 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+E WLT I + P+R+RKLL+ ++EI R A + G TL+ +++Y+
Sbjct: 61 RNEAWLTGCNITPLNTASTHVVCTPKRDRKLLMHRKEIDRFAAMADQKGYTLIALELYWK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K +AL +GK+ +DKRET K+RDWD+QK RI++ +
Sbjct: 121 GPN-VKCKIALGKGKQAHDKRETSKQRDWDKQKERIMKNN 159
>gi|121635197|ref|YP_975442.1| SsrA-binding protein [Neisseria meningitidis FAM18]
gi|218768508|ref|YP_002343020.1| SsrA-binding protein [Neisseria meningitidis Z2491]
gi|261400712|ref|ZP_05986837.1| SsrA-binding protein [Neisseria lactamica ATCC 23970]
gi|304387066|ref|ZP_07369318.1| SsrA-binding protein [Neisseria meningitidis ATCC 13091]
gi|11279405|pir||A81869 small protein B homolog NMA1726 [imported] - Neisseria meningitidis
(strain Z2491 serogroup A)
gi|120866903|emb|CAM10662.1| small protein B homolog [Neisseria meningitidis FAM18]
gi|121052516|emb|CAM08855.1| small protein B homolog [Neisseria meningitidis Z2491]
gi|269209471|gb|EEZ75926.1| SsrA-binding protein [Neisseria lactamica ATCC 23970]
gi|304338865|gb|EFM04967.1| SsrA-binding protein [Neisseria meningitidis ATCC 13091]
gi|325128599|gb|EGC51469.1| SsrA-binding protein [Neisseria meningitidis N1568]
gi|325130575|gb|EGC53322.1| SsrA-binding protein [Neisseria meningitidis OX99.30304]
gi|325132658|gb|EGC55343.1| SsrA-binding protein [Neisseria meningitidis M6190]
gi|325134658|gb|EGC57298.1| SsrA-binding protein [Neisseria meningitidis M13399]
gi|325136581|gb|EGC59182.1| SsrA-binding protein [Neisseria meningitidis M0579]
gi|325138546|gb|EGC61109.1| SsrA-binding protein [Neisseria meningitidis ES14902]
gi|325140685|gb|EGC63201.1| SsrA-binding protein [Neisseria meningitidis CU385]
gi|325142694|gb|EGC65074.1| SsrA-binding protein [Neisseria meningitidis 961-5945]
gi|325144784|gb|EGC67075.1| SsrA-binding protein [Neisseria meningitidis M01-240013]
gi|325205726|gb|ADZ01179.1| SsrA-binding protein [Neisseria meningitidis M04-240196]
gi|325208464|gb|ADZ03916.1| SsrA-binding protein [Neisseria meningitidis NZ-05/33]
Length = 150
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 5 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 64
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL++ EI++L R G T+VP+ ++F+ +G K+++ LA+G
Sbjct: 65 PTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 123
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 124 KKQHDKRQSMKEADWKREKQRLIKH 148
>gi|325963887|ref|YP_004241793.1| SsrA-binding protein [Arthrobacter phenanthrenivorans Sphe3]
gi|323469974|gb|ADX73659.1| SsrA-binding protein [Arthrobacter phenanthrenivorans Sphe3]
Length = 149
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 63/139 (45%), Positives = 97/139 (69%), Gaps = 1/139 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NRKAR++YH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+ +IPEY
Sbjct: 2 VATNRKARHDYHVLDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWMEAIHIPEY 61
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
Q + NH RR RKLLL + E+ ++ VR G T+VP+++YF G AK+++ +A+GK
Sbjct: 62 NQGSWTNHAARRRRKLLLHREELIKISHKVRESGYTIVPLQLYFVD-GKAKVEIGVARGK 120
Query: 134 KNYDKRETEKKRDWDRQKH 152
+ YDKR+T +++ +R+
Sbjct: 121 REYDKRQTLREQQDNREAQ 139
>gi|189500736|ref|YP_001960206.1| SsrA-binding protein [Chlorobium phaeobacteroides BS1]
gi|189496177|gb|ACE04725.1| SsrA-binding protein [Chlorobium phaeobacteroides BS1]
Length = 157
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + P + NRKAR+ Y I+ + AGI L G+EVKS+R+ K ++++SYA
Sbjct: 1 MAKAEK-KPQYVSTTLNRKARHEYFILDTMVAGIELKGSEVKSVRLGKASLNESYAIIHR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N I Y + P+R+RKLLL + EI +L + + G+TLVP+K +FN K
Sbjct: 60 GEVWLENMQIAAYEHNHVEPIDPKRSRKLLLKREEILKLQTRLHQKGLTLVPLKAFFNKK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G+ KI+L LA+GK+ +DKRET K+RD RQ ++ ++
Sbjct: 120 GVLKIELGLAKGKQLHDKRETIKERDTQRQLQKLKNQY 157
>gi|302346527|ref|YP_003814825.1| SsrA-binding protein [Prevotella melaninogenica ATCC 25845]
gi|302150434|gb|ADK96695.1| SsrA-binding protein [Prevotella melaninogenica ATCC 25845]
Length = 159
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + + K + N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DSY
Sbjct: 1 MNKEQQEKRKKSPIQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDSYCYIT 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH +R RKLLL+++EI L A + G T++P I+ +
Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEAKRPRKLLLNRKEIRNLEADSKTPGFTIIPTLIFIDE 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK YDKR+T K+++ R+ R + +
Sbjct: 121 NGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRAKKHY 159
>gi|228478158|ref|ZP_04062766.1| SsrA-binding protein [Streptococcus salivarius SK126]
gi|312863356|ref|ZP_07723594.1| SsrA-binding protein [Streptococcus vestibularis F0396]
gi|228249837|gb|EEK09107.1| SsrA-binding protein [Streptococcus salivarius SK126]
gi|311100892|gb|EFQ59097.1| SsrA-binding protein [Streptococcus vestibularis F0396]
Length = 154
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQDPDRTRKLLLKKKQITKLQNDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R RI++ N
Sbjct: 126 GKHDYDKRESIKRREQERDIKRIIKSVN 153
>gi|313764093|gb|EFS35457.1| SsrA-binding protein [Propionibacterium acnes HL013PA1]
gi|313813324|gb|EFS51038.1| SsrA-binding protein [Propionibacterium acnes HL025PA1]
gi|313816442|gb|EFS54156.1| SsrA-binding protein [Propionibacterium acnes HL059PA1]
gi|313827259|gb|EFS64973.1| SsrA-binding protein [Propionibacterium acnes HL063PA2]
gi|314914954|gb|EFS78785.1| SsrA-binding protein [Propionibacterium acnes HL005PA4]
gi|314917821|gb|EFS81652.1| SsrA-binding protein [Propionibacterium acnes HL050PA1]
gi|314919711|gb|EFS83542.1| SsrA-binding protein [Propionibacterium acnes HL050PA3]
gi|314930046|gb|EFS93877.1| SsrA-binding protein [Propionibacterium acnes HL067PA1]
gi|314956375|gb|EFT00687.1| SsrA-binding protein [Propionibacterium acnes HL027PA1]
gi|314957247|gb|EFT01350.1| SsrA-binding protein [Propionibacterium acnes HL002PA1]
gi|314967696|gb|EFT11795.1| SsrA-binding protein [Propionibacterium acnes HL037PA1]
gi|315098167|gb|EFT70143.1| SsrA-binding protein [Propionibacterium acnes HL059PA2]
gi|315101680|gb|EFT73656.1| SsrA-binding protein [Propionibacterium acnes HL046PA1]
gi|315109499|gb|EFT81475.1| SsrA-binding protein [Propionibacterium acnes HL030PA2]
gi|327329962|gb|EGE71716.1| SsrA-binding protein [Propionibacterium acnes HL097PA1]
gi|327452740|gb|EGE99394.1| SsrA-binding protein [Propionibacterium acnes HL083PA2]
gi|328752607|gb|EGF66223.1| SsrA-binding protein [Propionibacterium acnes HL025PA2]
gi|328753840|gb|EGF67456.1| SsrA-binding protein [Propionibacterium acnes HL087PA1]
Length = 160
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
+VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R+L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRVLANR 154
>gi|15677378|ref|NP_274533.1| SsrA-binding protein [Neisseria meningitidis MC58]
gi|161870386|ref|YP_001599558.1| SsrA-binding protein [Neisseria meningitidis 053442]
gi|254805292|ref|YP_003083513.1| tmRNA-binding protein SmpB [Neisseria meningitidis alpha14]
gi|60415933|sp|P0A0Y7|SSRP_NEIMA RecName: Full=SsrA-binding protein
gi|60415934|sp|P0A0Y8|SSRP_NEIMB RecName: Full=SsrA-binding protein
gi|187611502|sp|A1KUW3|SSRP_NEIMF RecName: Full=SsrA-binding protein
gi|189046835|sp|A9M0W1|SSRP_NEIM0 RecName: Full=SsrA-binding protein
gi|7226770|gb|AAF41881.1| small major protein B [Neisseria meningitidis MC58]
gi|161595939|gb|ABX73599.1| small protein B [Neisseria meningitidis 053442]
gi|254668834|emb|CBA06867.1| tmRNA-binding protein SmpB [Neisseria meningitidis alpha14]
gi|254670703|emb|CBA06856.1| SsrA-binding protein [Neisseria meningitidis alpha153]
gi|261392228|emb|CAX49746.1| SsrA-binding protein [Neisseria meningitidis 8013]
gi|308389670|gb|ADO31990.1| small protein B-like protein [Neisseria meningitidis alpha710]
gi|309378725|emb|CBX22675.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|316986010|gb|EFV64947.1| ssrA-binding protein [Neisseria meningitidis H44/76]
gi|319410756|emb|CBY91139.1| SsrA-binding protein [Neisseria meningitidis WUE 2594]
gi|325198647|gb|ADY94103.1| SsrA-binding protein [Neisseria meningitidis G2136]
gi|325199872|gb|ADY95327.1| SsrA-binding protein [Neisseria meningitidis H44/76]
gi|325201784|gb|ADY97238.1| SsrA-binding protein [Neisseria meningitidis M01-240149]
gi|325204503|gb|ADY99956.1| SsrA-binding protein [Neisseria meningitidis M01-240355]
Length = 148
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL++ EI++L R G T+VP+ ++F+ +G K+++ LA+G
Sbjct: 63 PTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146
>gi|288802427|ref|ZP_06407866.1| SsrA-binding protein [Prevotella melaninogenica D18]
gi|288334955|gb|EFC73391.1| SsrA-binding protein [Prevotella melaninogenica D18]
Length = 159
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ + + K V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DSY
Sbjct: 1 MNKEQQEKRKKSPVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDSYCYIT 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH +R RKLLL+++EI L + + G T++P I+ +
Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEAKRPRKLLLTRKEIRNLESESKTPGFTIIPTLIFIDE 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK YDKR+T K+++ R+ R + +
Sbjct: 121 NGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRAKKHY 159
>gi|313672341|ref|YP_004050452.1| ssra-binding protein [Calditerrivibrio nitroreducens DSM 19672]
gi|312939097|gb|ADR18289.1| SsrA-binding protein [Calditerrivibrio nitroreducens DSM 19672]
Length = 151
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ NRKA ++Y I+ ++E GIVL GTEVKS + +VN+ DS+ N E +L N++I
Sbjct: 2 KVLTQNRKAYHDYEILETYEVGIVLQGTEVKSCKNGQVNLKDSHIRIVNGEAFLLNAHIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q N NH P R RKLLL KREI++L V+ G+TLVP+K+Y K K+++ALA+
Sbjct: 62 PYEQGNYTNHEPTRTRKLLLHKREINKLAGKVQEKGLTLVPLKMYLK-KNRVKLEIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK +DKR+ KK+D +++ R +
Sbjct: 121 GKKTHDKRDEIKKKDLEKEFSRDFKN 146
>gi|295099571|emb|CBK88660.1| SsrA-binding protein [Eubacterium cylindroides T2-87]
Length = 151
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 1/149 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+K ++DNRKAR++Y + +EAG+ L GTE+KS+R KV + DSY +F N+E ++
Sbjct: 2 STQKTIADNRKARHDYELYDRYEAGLELKGTEIKSIRRGKVQLKDSYISFYNNEAYIKGM 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y N FNH R+RKLLL K+EI +LY R G T+VP+++Y + KGLAK+++A
Sbjct: 62 HISPYEFGNIFNHDETRDRKLLLHKKEIRKLYQDTRIKGYTVVPVRLYLS-KGLAKLEIA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GK +DKRE++K +D R+ + L+
Sbjct: 121 LAKGKNLHDKRESQKAKDAKREIEKALKN 149
>gi|153855174|ref|ZP_01996358.1| hypothetical protein DORLON_02371 [Dorea longicatena DSM 13814]
gi|149752343|gb|EDM62274.1| hypothetical protein DORLON_02371 [Dorea longicatena DSM 13814]
Length = 154
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+V++N+KA ++Y I+ E GI L GTEVKSLR+ K +I +S+ EN E+++
Sbjct: 3 KSNDKMVANNKKAYHDYFILDKIETGIALHGTEVKSLRMGKCSIKESFIRIENGEVFIYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL K EI++L + GM +VP+K+YF L K+++
Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHKSEINKLIGKTKEKGMAIVPLKVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILR 156
LA+GKK YDKR+ K+D R+ R +
Sbjct: 122 GLAKGKKLYDKRQDIAKKDQRREAERDFK 150
>gi|325297192|ref|YP_004257109.1| SsrA-binding protein [Bacteroides salanitronis DSM 18170]
gi|324316745|gb|ADY34636.1| SsrA-binding protein [Bacteroides salanitronis DSM 18170]
Length = 152
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 96/151 (63%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+ N++A ++Y + ++ AGIVLTGTE+KS+R K ++ D++ F E+W+
Sbjct: 2 KTNASNINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWVK 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I EY + NH RR+RKLLL+K+E+ +L G T+VP ++Y N KGLAK+
Sbjct: 62 NMHIAEYFYGSYNNHAARRDRKLLLTKKELRKLERTSAEPGFTIVPTRMYINEKGLAKVV 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ALA+GKK YDKR++ K+++ R R+ +
Sbjct: 122 IALAKGKKQYDKRQSLKEKEDKRMMDRMFKR 152
>gi|87306626|ref|ZP_01088773.1| SsrA-binding protein [Blastopirellula marina DSM 3645]
gi|87290805|gb|EAQ82692.1| SsrA-binding protein [Blastopirellula marina DSM 3645]
Length = 176
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 61/150 (40%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
++ + +NRKAR++Y I+ + E GI L G+EVK+LR KV++ +++A E++L N I
Sbjct: 28 ERPIGENRKARHDYEIIDTLECGIQLVGSEVKTLRDGKVSLGEAFARVLRGEVFLVNCEI 87
Query: 71 PEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
PEY + F NH P+R RKLLL K EI + A G+++VP+K+YF +GL K+ L +
Sbjct: 88 PEYRNTSMFLNHVPKRPRKLLLRKSEIVKFAAKSEDKGLSIVPLKMYFK-RGLVKVLLGI 146
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+G+K +DKR+ K++D R R++R +
Sbjct: 147 GRGRKQHDKRDKLKQQDAKRDIARVMRSRD 176
>gi|330685644|gb|EGG97286.1| SsrA-binding protein [Staphylococcus epidermidis VCU121]
Length = 154
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + E
Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE 58
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G
Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDRTREIGYSIIPLKLYLK-HGQ 117
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ L +A+GKK YDKR+ K++ R R ++
Sbjct: 118 CKVLLGIARGKKKYDKRQALKEKAVKRDMDRAVKAR 153
>gi|116491420|ref|YP_810964.1| SsrA-binding protein [Oenococcus oeni PSU-1]
gi|118587034|ref|ZP_01544465.1| tmRNA-binding protein, SsrA-binding protein [Oenococcus oeni ATCC
BAA-1163]
gi|290890999|ref|ZP_06554063.1| hypothetical protein AWRIB429_1453 [Oenococcus oeni AWRIB429]
gi|122276398|sp|Q04E23|SSRP_OENOB RecName: Full=SsrA-binding protein
gi|116092145|gb|ABJ57299.1| SsrA-binding protein [Oenococcus oeni PSU-1]
gi|118432555|gb|EAV39290.1| tmRNA-binding protein, SsrA-binding protein [Oenococcus oeni ATCC
BAA-1163]
gi|290479398|gb|EFD88058.1| hypothetical protein AWRIB429_1453 [Oenococcus oeni AWRIB429]
Length = 155
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 104/158 (65%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++ NR+A +NY I ++EAGI LTGTE+KS+R+ ++ I D+Y T +
Sbjct: 1 MAKKDKHDDA---LARNRRASFNYFIGETYEAGIQLTGTEIKSVRLGQITIGDAYITVRD 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+ +L N+ I Y Q N+FN P R RKLLL K+EI L AV ++G T+VP+++Y K
Sbjct: 58 QQAFLNNANISPYKQGNQFNVDPLRRRKLLLHKKEILALDRAVSKEGKTIVPLRVYI-VK 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AKI +A+ GKKNYDKR+T K+RD R+ + L+
Sbjct: 117 GFAKILIAIGTGKKNYDKRQTIKERDLKRELGKNLKNF 154
>gi|226325402|ref|ZP_03800920.1| hypothetical protein COPCOM_03204 [Coprococcus comes ATCC 27758]
gi|225206145|gb|EEG88499.1| hypothetical protein COPCOM_03204 [Coprococcus comes ATCC 27758]
Length = 147
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 62/142 (43%), Positives = 93/142 (65%), Gaps = 1/142 (0%)
Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQAN 77
+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +S+ E+ E+++ +I Y + N
Sbjct: 5 KKAYHDYFILDTYEAGIALAGTEVKSLRMGKCSIKESFIRIEDGEVFIYGMHISPYEKGN 64
Query: 78 RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYD 137
FN P R RKLLL K EI++L + GM +VP+K+YF+ K L K+++ LA+GKK YD
Sbjct: 65 IFNKDPLRVRKLLLHKSEINKLIGKTKEKGMAIVPLKVYFS-KSLVKVEIGLAKGKKLYD 123
Query: 138 KRETEKKRDWDRQKHRILREHN 159
KR+ K+D R+ R + N
Sbjct: 124 KRDDIAKKDQKREAEREFKIRN 145
>gi|42518803|ref|NP_964733.1| SsrA-binding protein [Lactobacillus johnsonii NCC 533]
gi|61216578|sp|Q74K75|SSRP_LACJO RecName: Full=SsrA-binding protein
gi|41583089|gb|AAS08699.1| SsrA-binding protein [Lactobacillus johnsonii NCC 533]
gi|329667648|gb|AEB93596.1| SsrA-binding protein [Lactobacillus johnsonii DPC 6026]
Length = 151
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 4/151 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N
Sbjct: 1 MKQKAD---NLIAQNKKASHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIINGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL KREI RL + GM ++P+K+Y G
Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKREIARLAGIQAQQGMAIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ + + QGKK YDKR+T KKRD DR+ HR
Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147
>gi|170725877|ref|YP_001759903.1| SsrA-binding protein [Shewanella woodyi ATCC 51908]
gi|238688682|sp|B1KKG8|SSRP_SHEWM RecName: Full=SsrA-binding protein
gi|169811224|gb|ACA85808.1| SsrA-binding protein [Shewanella woodyi ATCC 51908]
Length = 164
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 1/145 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY E +L I
Sbjct: 16 IARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFMREGEAFLFGCTIAPL 75
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R+RKLLL ++E+ +L V R G ++VP+ +Y+ KI++ L +G
Sbjct: 76 NTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKG 135
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR+ K R+W +K R +++
Sbjct: 136 KKEHDKRDDTKDREWQIEKARTMKK 160
>gi|256390609|ref|YP_003112173.1| SsrA-binding protein [Catenulispora acidiphila DSM 44928]
gi|256356835|gb|ACU70332.1| SsrA-binding protein [Catenulispora acidiphila DSM 44928]
Length = 161
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 94/142 (66%), Gaps = 1/142 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+KV++ N+KAR+ Y I ++EAGI LTGTEVKSLR + ++ D YA ++ E+WL
Sbjct: 3 KEQGQKVIARNKKARHEYEIEATYEAGISLTGTEVKSLRAGRASLVDGYAVIKDAEVWLQ 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I EY + NH PRRNRKLLL + EI++L + G+TL+P+++YF G K++
Sbjct: 63 GVHIAEYAEGTWTNHSPRRNRKLLLHRAEINKLIGKTKETGLTLIPLELYFKD-GKVKVE 121
Query: 127 LALAQGKKNYDKRETEKKRDWD 148
+ LA+GKK YDKR+T +R
Sbjct: 122 IGLARGKKTYDKRQTLMERQNK 143
>gi|71907961|ref|YP_285548.1| SsrA-binding protein [Dechloromonas aromatica RCB]
gi|123627212|sp|Q47DK3|SSRP_DECAR RecName: Full=SsrA-binding protein
gi|71847582|gb|AAZ47078.1| SsrA-binding protein [Dechloromonas aromatica RCB]
Length = 149
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y + +EAGI L G EVK++R ++NI +SY + E++L +I
Sbjct: 3 ITVNKKAFHDYFVEEKYEAGISLEGWEVKAIRAGRMNIKESYVIIKGGELFLIGMHISPL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ +H P R RKLLL +EI +L V R G LVP+ ++F +G K+++ LA+G
Sbjct: 63 ATASTHVSHDPTRTRKLLLHAKEISKLIGKVERAGYALVPLDLHF-VRGRIKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKR E +D R+ R ++E
Sbjct: 122 KKQHDKRADELDKDSKREAQRAMKER 147
>gi|314923652|gb|EFS87483.1| SsrA-binding protein [Propionibacterium acnes HL001PA1]
Length = 160
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
KVV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVKVVARNRRAAHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWIYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALVNR 154
>gi|212694452|ref|ZP_03302580.1| hypothetical protein BACDOR_03980 [Bacteroides dorei DSM 17855]
gi|237711210|ref|ZP_04541691.1| SsrA-binding protein [Bacteroides sp. 9_1_42FAA]
gi|237727574|ref|ZP_04558055.1| SsrA-binding protein [Bacteroides sp. D4]
gi|265750801|ref|ZP_06086864.1| SsrA-binding protein [Bacteroides sp. 3_1_33FAA]
gi|212662953|gb|EEB23527.1| hypothetical protein BACDOR_03980 [Bacteroides dorei DSM 17855]
gi|229434430|gb|EEO44507.1| SsrA-binding protein [Bacteroides dorei 5_1_36/D4]
gi|229455054|gb|EEO60775.1| SsrA-binding protein [Bacteroides sp. 9_1_42FAA]
gi|263237697|gb|EEZ23147.1| SsrA-binding protein [Bacteroides sp. 3_1_33FAA]
Length = 150
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 101/149 (67%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P V N++A ++Y + ++ AGIVLTGTE+KS+R+ K ++ D+Y F E+W+ N
Sbjct: 2 KPTPVNIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRLGKASLVDTYCYFVQGELWVKNM 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY + NH RR RKLLLSK+E+ +L A + G T+VP++++ N KGLAK+ +A
Sbjct: 62 HIAEYFYGSYNNHSARRERKLLLSKKELRKLEEAGKNPGFTIVPVRLFINEKGLAKLVVA 121
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GKK YDKRE+ K++D R+ R+ +
Sbjct: 122 LAKGKKQYDKRESLKEKDDRREMDRMFKR 150
>gi|194335973|ref|YP_002017767.1| SsrA-binding protein [Pelodictyon phaeoclathratiforme BU-1]
gi|194308450|gb|ACF43150.1| SsrA-binding protein [Pelodictyon phaeoclathratiforme BU-1]
Length = 157
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + + NRKAR+ + I+ + AGI L G+EVKS+R+ + ++SDS+A
Sbjct: 1 MAKKQQTQQYVQAI-QNRKARFEFEILDTLVAGIQLFGSEVKSVRLGQASLSDSFAIILR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+EIWL I Y +R+RKLLL K EI ++ A + G+TLVP+K +FN+K
Sbjct: 60 NEIWLEGMQITPYAHNRMELIEAKRSRKLLLHKEEIRKIEAKISEKGLTLVPLKAFFNSK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL KI+LA+A+GKK YDKRET K R+ RQ +I +++
Sbjct: 120 GLLKIELAIAKGKKLYDKRETIKARENQRQMEQIKKQY 157
>gi|326773751|ref|ZP_08233034.1| SsrA-binding protein [Actinomyces viscosus C505]
gi|326636981|gb|EGE37884.1| SsrA-binding protein [Actinomyces viscosus C505]
Length = 178
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61
+ K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ +
Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIEIDRHG 77
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G
Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLATRVQAKGYTVVPLELYFIG-G 136
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148
AK+++ALA+GK+++DKR+ ++
Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163
>gi|55820705|ref|YP_139147.1| SsrA-binding protein [Streptococcus thermophilus LMG 18311]
gi|55822596|ref|YP_141037.1| SsrA-binding protein [Streptococcus thermophilus CNRZ1066]
gi|116627511|ref|YP_820130.1| SsrA-binding protein [Streptococcus thermophilus LMD-9]
gi|67461894|sp|Q5M0N4|SSRP_STRT1 RecName: Full=SsrA-binding protein
gi|67461896|sp|Q5M570|SSRP_STRT2 RecName: Full=SsrA-binding protein
gi|122267891|sp|Q03LI8|SSRP_STRTD RecName: Full=SsrA-binding protein
gi|55736690|gb|AAV60332.1| tmRNA-binding protein SsrA [Streptococcus thermophilus LMG 18311]
gi|55738581|gb|AAV62222.1| tmRNA-binding protein SsrA [Streptococcus thermophilus CNRZ1066]
gi|116100788|gb|ABJ65934.1| SsrA-binding protein [Streptococcus thermophilus LMD-9]
gi|312278030|gb|ADQ62687.1| SsrA-binding protein [Streptococcus thermophilus ND03]
Length = 154
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQDPERTRKLLLKKKQITKLQNDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R RI++ N
Sbjct: 126 GKHDYDKRESIKRREQERDIKRIIKSVN 153
>gi|171463290|ref|YP_001797403.1| SsrA-binding protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192828|gb|ACB43789.1| SsrA-binding protein [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 150
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72
+ DN+KA ++Y I FEAG+VL G EVK++R V+I ++Y E++LT +I P
Sbjct: 3 IVDNKKAFFDYFIEERFEAGLVLEGWEVKAIRAGCVHIKEAYVVIRKAELFLTGCHITPL 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL+ EI +L V + G TLVP+ ++F+ KG K ++ LA+G
Sbjct: 63 LSTSTHIVPNNTRTRKLLLNAIEIRKLIGKVEQKGYTLVPLNLHFS-KGNVKCEIGLARG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK ++KR K+R+W+ QK RI R
Sbjct: 122 KKQHNKRAATKEREWEVQKGRIAR 145
>gi|15892519|ref|NP_360233.1| SsrA-binding protein [Rickettsia conorii str. Malish 7]
gi|20140114|sp|Q92I24|SSRP_RICCN RecName: Full=SsrA-binding protein
gi|15619679|gb|AAL03134.1| small protein B homolog [Rickettsia conorii str. Malish 7]
Length = 152
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTRHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|260221440|emb|CBA30005.1| SsrA-binding protein [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 147
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PEY 73
+DN+KA +NY FEAG+VL G EVKSLR KV ++D Y + E+++ I P +
Sbjct: 2 ADNKKAAFNYFFEERFEAGLVLEGWEVKSLREGKVQLTDGYVVIRDGEMFIIGLQINPLH 61
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
++ + R +KLLL K EI RL V + G TLVP+ +++ + G K D+ALA+GK
Sbjct: 62 TASSHVSPDKIRTKKLLLHKEEIKRLTGKVEQKGYTLVPINLHWKS-GKVKCDIALAKGK 120
Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159
+DKR+T K R+ R+ R +++ N
Sbjct: 121 AEHDKRDTIKDREGKREVERAMKDRN 146
>gi|157828467|ref|YP_001494709.1| SsrA-binding protein [Rickettsia rickettsii str. 'Sheila Smith']
gi|165933185|ref|YP_001649974.1| SsrA-binding protein [Rickettsia rickettsii str. Iowa]
gi|30173368|sp|Q9AKJ8|SSRP_RICRI RecName: Full=SsrA-binding protein
gi|166223446|sp|A8GS26|SSRP_RICRS RecName: Full=SsrA-binding protein
gi|189046840|sp|B0BXJ2|SSRP_RICRO RecName: Full=SsrA-binding protein
gi|13235365|emb|CAC33658.1| Small protein [Rickettsia rickettsii]
gi|157800948|gb|ABV76201.1| SsrA-binding protein [Rickettsia rickettsii str. 'Sheila Smith']
gi|165908272|gb|ABY72568.1| SsrA-binding protein [Rickettsia rickettsii str. Iowa]
Length = 152
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA ++Y I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFHYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|161579587|ref|NP_218623.2| SsrA-binding protein [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025417|ref|YP_001933189.1| SsrA-binding protein [Treponema pallidum subsp. pallidum SS14]
gi|8247958|sp|O83214|SSRP_TREPA RecName: Full=SsrA-binding protein
gi|238689315|sp|B2S2D1|SSRP_TREPS RecName: Full=SsrA-binding protein
gi|189017992|gb|ACD70610.1| small protein B [Treponema pallidum subsp. pallidum SS14]
gi|291059591|gb|ADD72326.1| SsrA-binding protein [Treponema pallidum subsp. pallidum str.
Chicago]
Length = 154
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 83/147 (56%), Gaps = 1/147 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+++ NRKA +NYH+ E GI L GTEVKS+R ++ D++A E+WL N
Sbjct: 4 TGTHLIAKNRKAFFNYHVEDRLECGIALEGTEVKSVRAGHLSFPDAFAEMRGGELWLKNV 63
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY+ A F P R RKLL + +I RL V G TLVP++ Y A G K+ L
Sbjct: 64 HIAEYVHACSFAPNPDRMRKLLAHRDQIARLKRKVEEKGYTLVPLEFYLKA-GRVKVALG 122
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ +GKK +DKR K RD R+ R L
Sbjct: 123 ICKGKKLFDKRAQIKARDNARELSRSL 149
>gi|154495152|ref|ZP_02034157.1| hypothetical protein PARMER_04200 [Parabacteroides merdae ATCC
43184]
gi|154085702|gb|EDN84747.1| hypothetical protein PARMER_04200 [Parabacteroides merdae ATCC
43184]
Length = 153
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 102/152 (67%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + N++A ++Y ++ +F AGIVLTGTE+KS+R+ K ++ D++ E E+W+
Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N Y+ EY NH RR+RKLLL+K+E+ ++ +A R +G T++P +++ N KGLAK+
Sbjct: 62 KNMYVAEYFYGTYNNHTARRDRKLLLTKKELRKIESAARNNGFTIIPTRLFINDKGLAKV 121
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+A+GKK YDKR++ K+RD R+ R +
Sbjct: 122 VVAIAKGKKEYDKRDSIKERDDRREMDRAFKR 153
>gi|313203308|ref|YP_004041965.1| ssra-binding protein [Paludibacter propionicigenes WB4]
gi|312442624|gb|ADQ78980.1| SsrA-binding protein [Paludibacter propionicigenes WB4]
Length = 151
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 98/148 (66%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
++ N++A ++Y I+ + AGI L GTE+KS+R K +++D+Y TF N+E+W+ N
Sbjct: 3 KKSNILIRNKRATFDYEILDKYLAGIQLYGTEIKSIRDGKASLADTYCTFINNELWVRNM 62
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y NH RR+RKLLL+KRE+++L + G T++P K++ N KGLAK+++
Sbjct: 63 HIATYFFGTYNNHDVRRDRKLLLTKRELNKLIRGTKETGNTIIPTKMFINDKGLAKLEIG 122
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILR 156
L +GKK YDKR++ K+++ R R +R
Sbjct: 123 LGKGKKTYDKRQSLKEKEDKRSIDRAMR 150
>gi|229586708|ref|YP_002845209.1| SsrA-binding protein [Rickettsia africae ESF-5]
gi|259511428|sp|C3PNF6|SSRP_RICAE RecName: Full=SsrA-binding protein
gi|228021758|gb|ACP53466.1| tmRNA-binding protein [Rickettsia africae ESF-5]
Length = 152
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 71/148 (47%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIAERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|261377604|ref|ZP_05982177.1| SsrA-binding protein [Neisseria cinerea ATCC 14685]
gi|269146355|gb|EEZ72773.1| SsrA-binding protein [Neisseria cinerea ATCC 14685]
Length = 148
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDQIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL + EI++L R G T+VP+ ++F+ +G K+++ LA+G
Sbjct: 63 PTASTHIKPDATRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHFS-RGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146
>gi|227873358|ref|ZP_03991618.1| tmRNA-binding protein [Oribacterium sinus F0268]
gi|227840794|gb|EEJ51164.1| tmRNA-binding protein [Oribacterium sinus F0268]
Length = 163
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K +++N+KA ++Y + SFE GI L GTEVKSLR+ + +I +++ N E ++
Sbjct: 9 TKESIKQIANNKKAFHDYFVEESFECGIQLFGTEVKSLRLGQASIKEAFCQIRNGECFVV 68
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN R+RKLLL K+EIHRL ++ G TL+P+ +YF L K++
Sbjct: 69 GMHINPYERGNIFNKDALRDRKLLLHKQEIHRLLGKIKEQGYTLMPLSLYFKGS-LVKLN 127
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ L +GKK YDKRE KK+ R+ + ++ N
Sbjct: 128 MGLCRGKKLYDKREDMKKKAQRRELEKEFKKAN 160
>gi|150005062|ref|YP_001299806.1| SsrA-binding protein [Bacteroides vulgatus ATCC 8482]
gi|254883196|ref|ZP_05255906.1| SsrA-binding protein [Bacteroides sp. 4_3_47FAA]
gi|294779020|ref|ZP_06744435.1| SsrA-binding protein [Bacteroides vulgatus PC510]
gi|319642570|ref|ZP_07997217.1| SsrA-binding protein [Bacteroides sp. 3_1_40A]
gi|166222360|sp|A6L3C0|SSRP_BACV8 RecName: Full=SsrA-binding protein
gi|149933486|gb|ABR40184.1| SsrA-binding protein [Bacteroides vulgatus ATCC 8482]
gi|254835989|gb|EET16298.1| SsrA-binding protein [Bacteroides sp. 4_3_47FAA]
gi|294447178|gb|EFG15763.1| SsrA-binding protein [Bacteroides vulgatus PC510]
gi|317385804|gb|EFV66736.1| SsrA-binding protein [Bacteroides sp. 3_1_40A]
Length = 150
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 101/149 (67%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
P + N++A ++Y + ++ AGIVLTGTE+KS+R+ K ++ D+Y F E+W+ N
Sbjct: 2 KPTPINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRLGKASLVDTYCYFVQGELWVKNM 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I EY + NH RR RKLLL+K+E+ +L A + G T+VP++++ N KGLAK+ +A
Sbjct: 62 HIAEYFYGSYNNHSARRERKLLLNKKELRKLEEAGKNPGFTIVPVRLFINEKGLAKLVVA 121
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GKK YDKRE+ K++D R+ R+ +
Sbjct: 122 LAKGKKQYDKRESLKEKDDRREMDRMFKR 150
>gi|313837554|gb|EFS75268.1| SsrA-binding protein [Propionibacterium acnes HL037PA2]
gi|314927567|gb|EFS91398.1| SsrA-binding protein [Propionibacterium acnes HL044PA1]
gi|314972493|gb|EFT16590.1| SsrA-binding protein [Propionibacterium acnes HL037PA3]
gi|328907836|gb|EGG27599.1| SsrA-binding protein [Propionibacterium sp. P08]
Length = 160
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
KVV+ NR+A ++Y I +EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVKVVARNRRATHDYTIGDKWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T++P+++YF G AK+++A
Sbjct: 66 HIPEYAFGTWRNHNVMRKRKLLLNKREIAKLSREADGPGKTIIPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD +R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDANREAQRALANR 154
>gi|315651155|ref|ZP_07904187.1| SsrA-binding protein [Eubacterium saburreum DSM 3986]
gi|315486620|gb|EFU76970.1| SsrA-binding protein [Eubacterium saburreum DSM 3986]
Length = 153
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KV+++N+KA ++Y I+ ++E GI L GTEVKS+R+ V+I +S+ E E+++ +
Sbjct: 4 GIKVIANNKKAYFDYFILENYETGIELFGTEVKSVRMGHVSIKESWIRIERGELFIMGMH 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y + N FN P R RKLL+ K+EI +L A + G+T+VP+K+Y L K+++ L
Sbjct: 64 INPYEKGNIFNKDPLRVRKLLMHKKEILKLDAKLNEKGLTIVPLKVYLKGS-LVKVEIGL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GKKNYDKRET K+ R+ + ++
Sbjct: 123 AKGKKNYDKRETLAKKTQQREIEKAMKR 150
>gi|322372550|ref|ZP_08047086.1| SsrA-binding protein [Streptococcus sp. C150]
gi|321277592|gb|EFX54661.1| SsrA-binding protein [Streptococcus sp. C150]
Length = 154
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I
Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLLNVHIA 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+
Sbjct: 67 PFEQGNIWNQDPDRIRKLLLKKKQIVKLANDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK +YDKRE+ K+R+ +R R+++ N
Sbjct: 126 GKHDYDKRESIKRREQERDIKRVIKSVN 153
>gi|255003540|ref|ZP_05278504.1| SsrA-binding protein [Anaplasma marginale str. Puerto Rico]
gi|255004665|ref|ZP_05279466.1| SsrA-binding protein [Anaplasma marginale str. Virginia]
Length = 149
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 108/145 (74%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+V++NRKAR++Y +++ ++AG+VL G+EVKSLR KVN+ D+Y ++ E+W+ N +I E
Sbjct: 3 IVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y +++R NH P R RKLLL KREIH++ ++ G+ +VP+ I+FN KGLAKI +A+ +G
Sbjct: 63 YNRSDRKNHKPLRVRKLLLRKREIHKIAGNIKVSGLAVVPLMIFFNNKGLAKIKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K RDW R+K RI R
Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147
>gi|325068366|ref|ZP_08127039.1| SsrA-binding protein [Actinomyces oris K20]
Length = 178
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61
+ K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ +
Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIELDRHG 77
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G
Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLETRVQAKGYTVVPLELYFIG-G 136
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148
AK+++ALA+GK+++DKR+ ++
Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163
>gi|300871194|ref|YP_003786067.1| SsrA-binding protein [Brachyspira pilosicoli 95/1000]
gi|300688895|gb|ADK31566.1| SsrA-binding protein [Brachyspira pilosicoli 95/1000]
Length = 161
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 74/144 (51%), Positives = 104/144 (72%), Gaps = 1/144 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA +NY ++ FEAGIVL GTEVKSLR VN+SDSYA+F+ E+++ N +I Y
Sbjct: 19 IARNKKALFNYEVIEKFEAGIVLLGTEVKSLRDRGVNMSDSYASFKKGELFIVNMHISPY 78
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
NR NH P R RKLL+ KREI RLY ++ G+TL+P+ +YF+ +G K++LALA+GK
Sbjct: 79 HFGNRNNHEPLRERKLLMKKREIKRLYGKIKEQGLTLIPISLYFS-RGKVKVELALAKGK 137
Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157
K +DKRET KK+ DR+ R ++
Sbjct: 138 KLHDKRETLKKKALDREMERYIKR 161
>gi|154250183|ref|YP_001411008.1| SsrA-binding protein [Fervidobacterium nodosum Rt17-B1]
gi|187611497|sp|A7HN68|SSRP_FERNB RecName: Full=SsrA-binding protein
gi|154154119|gb|ABS61351.1| SsrA-binding protein [Fervidobacterium nodosum Rt17-B1]
Length = 149
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 101/147 (68%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++ N+KA +Y I ++EAGIVL GTEVKSLR + DS+ + EIWL N +IP
Sbjct: 2 RIIATNKKAYTDYIIDETYEAGIVLVGTEVKSLREHGASFKDSFCRVKEGEIWLLNLHIP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N +NH P R RKLLL K+EI R+++ ++ +G T++P KIYFN +G K+++A+A+
Sbjct: 62 PYQHGNIYNHDPERPRKLLLHKKEIDRIWSKLKLEGYTVIPTKIYFNNQGKVKVEIAIAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK+YDKRE KK++ ++ L+ +
Sbjct: 122 GKKSYDKREEIKKKETQKRIKEYLKYN 148
>gi|268319801|ref|YP_003293457.1| SsrA-binding protein SmpB [Lactobacillus johnsonii FI9785]
gi|262398176|emb|CAX67190.1| SsrA-binding protein SmpB [Lactobacillus johnsonii FI9785]
Length = 151
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 4/151 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N
Sbjct: 1 MKQKAD---NLIAQNKKASHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIINGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL K+EI RL + GM ++P+K+Y G
Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKKEIVRLAGIQAQQGMAIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ + + QGKK YDKR+T KKRD DR+ HR
Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147
>gi|118594660|ref|ZP_01552007.1| SsrA-binding protein [Methylophilales bacterium HTCC2181]
gi|118440438|gb|EAV47065.1| SsrA-binding protein [Methylophilales bacterium HTCC2181]
Length = 151
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA ++Y I +EAGIVL G EVK++R ++ +I ++Y + EI+L +I
Sbjct: 3 IVQNKKAFHDYFIEAKYEAGIVLEGWEVKAIRDNRAHIKEAYVIIQRGEIYLLGCHITPM 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N R RKLLL+ EI +L V R G TLVP+ +++ KG K ++ LA+G
Sbjct: 63 GNASTHINPENVRTRKLLLNNDEIAKLIGKVERSGYTLVPLDLHYK-KGFIKCEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKR EK++DW+R K RI+R N
Sbjct: 122 KKQYDKRAVEKEKDWNRDKTRIIRAVN 148
>gi|120599673|ref|YP_964247.1| SsrA-binding protein [Shewanella sp. W3-18-1]
gi|146292332|ref|YP_001182756.1| SsrA-binding protein [Shewanella putrefaciens CN-32]
gi|166223454|sp|A4Y4S4|SSRP_SHEPC RecName: Full=SsrA-binding protein
gi|166223456|sp|A1RLZ8|SSRP_SHESW RecName: Full=SsrA-binding protein
gi|120559766|gb|ABM25693.1| SsrA-binding protein [Shewanella sp. W3-18-1]
gi|145564022|gb|ABP74957.1| SsrA-binding protein [Shewanella putrefaciens CN-32]
gi|319425634|gb|ADV53708.1| SsrA-binding protein [Shewanella putrefaciens 200]
Length = 163
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K ++ N++A + Y EAG+ L G EVKS+R+ KVN+SD Y +N
Sbjct: 1 MVKKKSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+
Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K R+W+ +K R++++
Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158
>gi|126173545|ref|YP_001049694.1| SsrA-binding protein [Shewanella baltica OS155]
gi|152999830|ref|YP_001365511.1| SsrA-binding protein [Shewanella baltica OS185]
gi|160874453|ref|YP_001553769.1| SsrA-binding protein [Shewanella baltica OS195]
gi|217974209|ref|YP_002358960.1| SsrA-binding protein [Shewanella baltica OS223]
gi|304409416|ref|ZP_07391036.1| SsrA-binding protein [Shewanella baltica OS183]
gi|307303774|ref|ZP_07583527.1| SsrA-binding protein [Shewanella baltica BA175]
gi|166223451|sp|A3D262|SSRP_SHEB5 RecName: Full=SsrA-binding protein
gi|166223452|sp|A6WKV9|SSRP_SHEB8 RecName: Full=SsrA-binding protein
gi|189046844|sp|A9KTG8|SSRP_SHEB9 RecName: Full=SsrA-binding protein
gi|254778378|sp|B8EAZ5|SSRP_SHEB2 RecName: Full=SsrA-binding protein
gi|125996750|gb|ABN60825.1| SsrA-binding protein [Shewanella baltica OS155]
gi|151364448|gb|ABS07448.1| SsrA-binding protein [Shewanella baltica OS185]
gi|160859975|gb|ABX48509.1| SsrA-binding protein [Shewanella baltica OS195]
gi|217499344|gb|ACK47537.1| SsrA-binding protein [Shewanella baltica OS223]
gi|304351934|gb|EFM16332.1| SsrA-binding protein [Shewanella baltica OS183]
gi|306912672|gb|EFN43095.1| SsrA-binding protein [Shewanella baltica BA175]
gi|315266689|gb|ADT93542.1| SsrA-binding protein [Shewanella baltica OS678]
Length = 163
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K+ ++ N++A + Y EAG+ L G EVKS+R+ KVN+SD Y +N
Sbjct: 1 MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+
Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ L +GKK++DKRE K R+W+ +K R++++
Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158
>gi|58038549|ref|YP_190513.1| SsrA-binding protein [Gluconobacter oxydans 621H]
gi|67461240|sp|Q5FUX0|SSRP_GLUOX RecName: Full=SsrA-binding protein
gi|58000963|gb|AAW59857.1| SsrA-binding protein [Gluconobacter oxydans 621H]
Length = 164
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGN--PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ K + + + NRK R++Y I+ + EAGIVL G EVKSLR+ + I+++YA
Sbjct: 1 MAGKKTKSGMISHGMAAQNRKGRFDYTILETTEAGIVLKGPEVKSLRLGRATITEAYAAE 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ EIWL NSYIPEY PR RKLL+ +++I AV R G +LVP+ I+FN
Sbjct: 61 RDGEIWLFNSYIPEYQGGVLSRFEPRAPRKLLMHRKQIAHFLGAVSRAGASLVPLDIHFN 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
A+G+AK+ L L QG++ DKR +RDW R K R++R
Sbjct: 121 ARGMAKVTLGLGQGRRKEDKRHAIAERDWKRDKARLVR 158
>gi|115372775|ref|ZP_01460081.1| SsrA-binding protein [Stigmatella aurantiaca DW4/3-1]
gi|310823431|ref|YP_003955789.1| ssra-binding protein [Stigmatella aurantiaca DW4/3-1]
gi|115370256|gb|EAU69185.1| SsrA-binding protein [Stigmatella aurantiaca DW4/3-1]
gi|309396503|gb|ADO73962.1| SsrA-binding protein [Stigmatella aurantiaca DW4/3-1]
Length = 161
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV+++NRKAR Y + EAG+ L G+EVKSLR N+SD+YA + +E++L N++I
Sbjct: 16 KVITENRKARAAYSVDEKLEAGLELLGSEVKSLRDGTANLSDAYALPKGNELYLLNAHIG 75
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y AN F H P R RKLLL + EI R A VR G +++P+ +YF G AK++L L +
Sbjct: 76 TYKPANVFTHEPTRGRKLLLHREEIDRWAAKVRERGYSIIPLVLYFK-NGRAKVELGLCR 134
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK + D+R+ K+R+ R+ R +R
Sbjct: 135 GKTHEDRRQDIKERETKREMDRAVRRR 161
>gi|313792398|gb|EFS40493.1| SsrA-binding protein [Propionibacterium acnes HL110PA1]
gi|313801466|gb|EFS42715.1| SsrA-binding protein [Propionibacterium acnes HL110PA2]
gi|313838229|gb|EFS75943.1| SsrA-binding protein [Propionibacterium acnes HL086PA1]
gi|314963182|gb|EFT07282.1| SsrA-binding protein [Propionibacterium acnes HL082PA1]
gi|315078245|gb|EFT50288.1| SsrA-binding protein [Propionibacterium acnes HL053PA2]
gi|327453493|gb|EGF00148.1| SsrA-binding protein [Propionibacterium acnes HL092PA1]
Length = 160
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68
+VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N
Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A
Sbjct: 66 HIPEYALGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GK+++DKR+ ++RD R+ R L
Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154
>gi|59801371|ref|YP_208083.1| SsrA-binding protein [Neisseria gonorrhoeae FA 1090]
gi|194098370|ref|YP_002001428.1| SsrA-binding protein [Neisseria gonorrhoeae NCCP11945]
gi|254493566|ref|ZP_05106737.1| SsrA-binding protein [Neisseria gonorrhoeae 1291]
gi|260440732|ref|ZP_05794548.1| SsrA-binding protein [Neisseria gonorrhoeae DGI2]
gi|268594625|ref|ZP_06128792.1| SsrA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268597048|ref|ZP_06131215.1| SsrA-binding protein [Neisseria gonorrhoeae FA19]
gi|268598773|ref|ZP_06132940.1| SsrA-binding protein [Neisseria gonorrhoeae MS11]
gi|268601132|ref|ZP_06135299.1| SsrA-binding protein [Neisseria gonorrhoeae PID18]
gi|268603450|ref|ZP_06137617.1| SsrA-binding protein [Neisseria gonorrhoeae PID1]
gi|268681930|ref|ZP_06148792.1| SsrA-binding protein [Neisseria gonorrhoeae PID332]
gi|268684145|ref|ZP_06151007.1| SsrA-binding protein [Neisseria gonorrhoeae SK-92-679]
gi|268686398|ref|ZP_06153260.1| SsrA-binding protein [Neisseria gonorrhoeae SK-93-1035]
gi|291044046|ref|ZP_06569762.1| SsrA-binding protein [Neisseria gonorrhoeae DGI2]
gi|293399232|ref|ZP_06643397.1| SsrA-binding protein [Neisseria gonorrhoeae F62]
gi|296314031|ref|ZP_06863972.1| SsrA-binding protein [Neisseria polysaccharea ATCC 43768]
gi|59718266|gb|AAW89671.1| putative small protein B homolog [Neisseria gonorrhoeae FA 1090]
gi|193933660|gb|ACF29484.1| SsrA-binding protein [Neisseria gonorrhoeae NCCP11945]
gi|226512606|gb|EEH61951.1| SsrA-binding protein [Neisseria gonorrhoeae 1291]
gi|268548014|gb|EEZ43432.1| SsrA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268550836|gb|EEZ45855.1| SsrA-binding protein [Neisseria gonorrhoeae FA19]
gi|268582904|gb|EEZ47580.1| SsrA-binding protein [Neisseria gonorrhoeae MS11]
gi|268585263|gb|EEZ49939.1| SsrA-binding protein [Neisseria gonorrhoeae PID18]
gi|268587581|gb|EEZ52257.1| SsrA-binding protein [Neisseria gonorrhoeae PID1]
gi|268622214|gb|EEZ54614.1| SsrA-binding protein [Neisseria gonorrhoeae PID332]
gi|268624429|gb|EEZ56829.1| SsrA-binding protein [Neisseria gonorrhoeae SK-92-679]
gi|268626682|gb|EEZ59082.1| SsrA-binding protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012509|gb|EFE04498.1| SsrA-binding protein [Neisseria gonorrhoeae DGI2]
gi|291610646|gb|EFF39756.1| SsrA-binding protein [Neisseria gonorrhoeae F62]
gi|296839277|gb|EFH23215.1| SsrA-binding protein [Neisseria polysaccharea ATCC 43768]
gi|317164071|gb|ADV07612.1| SsrA-binding protein [Neisseria gonorrhoeae TCDC-NG08107]
Length = 150
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 5 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 64
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL + EI++L R G T+VP+ ++F+ +G K+++ LA+G
Sbjct: 65 PTASTHIKPDAVRPRKLLLKQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 123
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 124 KKQHDKRQSMKEADWKREKQRLIKH 148
>gi|152991218|ref|YP_001356940.1| SsrA-binding protein [Nitratiruptor sp. SB155-2]
gi|166223231|sp|A6Q524|SSRP_NITSB RecName: Full=SsrA-binding protein
gi|151423079|dbj|BAF70583.1| ssrA RNA-binding protein [Nitratiruptor sp. SB155-2]
Length = 150
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA +++ I+ +EAG+VL G+EVK++R +VN+ DS+ F E ++ +I
Sbjct: 2 KVIATNKKAFHDFEILERYEAGLVLQGSEVKAIRAGRVNLKDSFVKFVKGEPFVFGMHIS 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
AN F +R RKLLL K+EI +L G T+VP+K+YFN K +AK+++ LA
Sbjct: 62 YLDSANPHFRPDEKRPRKLLLHKKEIDKLIGKTSEKGYTIVPLKLYFNKKNIAKLEIGLA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRE+ KK+ DR+ ++E+
Sbjct: 122 KGKTLHDKRESLKKKIMDREARAAMKEY 149
>gi|323345569|ref|ZP_08085792.1| SsrA-binding protein [Prevotella oralis ATCC 33269]
gi|323093683|gb|EFZ36261.1| SsrA-binding protein [Prevotella oralis ATCC 33269]
Length = 159
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 96/144 (66%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA + Y+ V ++ AGIVLTGTE+KS+R K ++ DS+ N EIW+ I Y
Sbjct: 16 IRNKKASFEYYFVDTYTAGIVLTGTEIKSIRQGKASLVDSFCYINNGEIWVKGMNISPYF 75
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ NH +R+RKLLL+KREI++L A + G T+VP+ ++ + KG AK+D+ALA+GKK
Sbjct: 76 YGSYANHEAKRDRKLLLTKREIYKLQEATKAVGFTIVPILVFIDGKGRAKVDIALARGKK 135
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKR+T K+++ R+ R ++
Sbjct: 136 EYDKRQTLKEKEDRREMDRAIKHF 159
>gi|303228998|ref|ZP_07315808.1| SsrA-binding protein [Veillonella atypica ACS-134-V-Col7a]
gi|303231499|ref|ZP_07318229.1| SsrA-binding protein [Veillonella atypica ACS-049-V-Sch6]
gi|302513842|gb|EFL55854.1| SsrA-binding protein [Veillonella atypica ACS-049-V-Sch6]
gi|302516412|gb|EFL58344.1| SsrA-binding protein [Veillonella atypica ACS-134-V-Col7a]
Length = 156
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +++DNRKAR++++I ++EAGI LTGTE+KS+R K+N+ DS+ +
Sbjct: 1 MAKKDAPS----LIADNRKARHDFNIHETYEAGIALTGTEIKSIRQGKLNLKDSFIRIDK 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+ L +I Y Q NRFNH P R RKLL+ K EI +L+ V+ G +L+P+ +F+ +
Sbjct: 57 GEMLLYGVHISPYEQGNRFNHEPERTRKLLMHKSEIKKLFQQVKEKGFSLIPLNFHFS-R 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+ + L GKK YDKR+ +RD R + L+E
Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRLKE 152
>gi|238923911|ref|YP_002937427.1| SsrA-binding protein [Eubacterium rectale ATCC 33656]
gi|238875586|gb|ACR75293.1| SsrA-binding protein [Eubacterium rectale ATCC 33656]
gi|291524492|emb|CBK90079.1| SsrA-binding protein [Eubacterium rectale DSM 17629]
gi|291527917|emb|CBK93503.1| SsrA-binding protein [Eubacterium rectale M104/1]
Length = 155
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
PKK++++N+K ++Y ++ +EAGI L GTEVKSLR+ K +I +S+ EN EI L
Sbjct: 3 KEPKKLIANNKKVYHDYFLLEKYEAGISLAGTEVKSLRMGKGSIKESFIRIENGEIILYG 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R +KLLL K+EI +L + ++ G T+VP+++YF L K+++
Sbjct: 63 MHITPYEKGNIFNKDPLRPKKLLLHKKEIEKLSSKMKEKGFTIVPVEVYFKGS-LVKVEI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
ALA+GKK YDKR K+D R+ R + N
Sbjct: 122 ALAKGKKLYDKRADIAKKDQKREAQRDFKIRN 153
>gi|116629931|ref|YP_815103.1| SsrA-binding protein [Lactobacillus gasseri ATCC 33323]
gi|238853249|ref|ZP_04643634.1| SsrA-binding protein [Lactobacillus gasseri 202-4]
gi|282851471|ref|ZP_06260836.1| SsrA-binding protein [Lactobacillus gasseri 224-1]
gi|311110435|ref|ZP_07711832.1| SsrA-binding protein [Lactobacillus gasseri MV-22]
gi|122273131|sp|Q042F7|SSRP_LACGA RecName: Full=SsrA-binding protein
gi|116095513|gb|ABJ60665.1| SsrA-binding protein [Lactobacillus gasseri ATCC 33323]
gi|238834133|gb|EEQ26385.1| SsrA-binding protein [Lactobacillus gasseri 202-4]
gi|282557439|gb|EFB63036.1| SsrA-binding protein [Lactobacillus gasseri 224-1]
gi|311065589|gb|EFQ45929.1| SsrA-binding protein [Lactobacillus gasseri MV-22]
Length = 151
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 4/151 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N
Sbjct: 1 MKQKAD---NLIAQNKKANHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIINGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL KREI RL + GM ++P+K+Y G
Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKREIARLAGIQAQQGMAIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ + + QGKK YDKR+T KKRD DR+ HR
Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147
>gi|227889642|ref|ZP_04007447.1| SsrA-binding protein [Lactobacillus johnsonii ATCC 33200]
gi|227849785|gb|EEJ59871.1| SsrA-binding protein [Lactobacillus johnsonii ATCC 33200]
Length = 151
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 4/151 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N
Sbjct: 1 MKQKVD---NLIAQNKKASHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIVNGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL K+EI RL + GM ++P+K+Y G
Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKKEIARLAGIQAQQGMAIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ + + QGKK YDKR+T KKRD DR+ HR
Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147
>gi|222475549|ref|YP_002563966.1| small protein B-like protein (smpB) [Anaplasma marginale str.
Florida]
gi|254995352|ref|ZP_05277542.1| SsrA-binding protein [Anaplasma marginale str. Mississippi]
gi|254773053|sp|B9KH06|SSRP_ANAMF RecName: Full=SsrA-binding protein
gi|222419687|gb|ACM49710.1| small protein B-like protein (smpB) [Anaplasma marginale str.
Florida]
Length = 149
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/145 (50%), Positives = 108/145 (74%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+V++NRKAR++Y +++ ++AG+VL G+EVKSLR KVN+ D+Y ++ E+W+ N +I E
Sbjct: 3 IVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y +++R NH P R RKLLL KREIH++ ++ G+ +VP+ I+FN KG+AKI +A+ +G
Sbjct: 63 YNRSDRKNHKPLRVRKLLLRKREIHKIAGNIKVSGLAVVPLMIFFNNKGIAKIKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K RDW R+K RI R
Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147
>gi|260171051|ref|ZP_05757463.1| SsrA-binding protein [Bacteroides sp. D2]
gi|315919371|ref|ZP_07915611.1| conserved hypothetical protein [Bacteroides sp. D2]
gi|313693246|gb|EFS30081.1| conserved hypothetical protein [Bacteroides sp. D2]
Length = 150
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 99/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ + ++ G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKFQREMKNPGFTIVPVRLFINEKGLAKLVIALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150
>gi|239998780|ref|ZP_04718704.1| SsrA-binding protein [Neisseria gonorrhoeae 35/02]
gi|240014303|ref|ZP_04721216.1| SsrA-binding protein [Neisseria gonorrhoeae DGI18]
gi|240016738|ref|ZP_04723278.1| SsrA-binding protein [Neisseria gonorrhoeae FA6140]
gi|240080930|ref|ZP_04725473.1| SsrA-binding protein [Neisseria gonorrhoeae FA19]
gi|240112711|ref|ZP_04727201.1| SsrA-binding protein [Neisseria gonorrhoeae MS11]
gi|240115456|ref|ZP_04729518.1| SsrA-binding protein [Neisseria gonorrhoeae PID18]
gi|240117751|ref|ZP_04731813.1| SsrA-binding protein [Neisseria gonorrhoeae PID1]
gi|240121866|ref|ZP_04734828.1| SsrA-binding protein [Neisseria gonorrhoeae PID24-1]
gi|240123307|ref|ZP_04736263.1| SsrA-binding protein [Neisseria gonorrhoeae PID332]
gi|240125555|ref|ZP_04738441.1| SsrA-binding protein [Neisseria gonorrhoeae SK-92-679]
gi|240128008|ref|ZP_04740669.1| SsrA-binding protein [Neisseria gonorrhoeae SK-93-1035]
gi|67461227|sp|Q5F816|SSRP_NEIG1 RecName: Full=SsrA-binding protein
Length = 148
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL + EI++L R G T+VP+ ++F+ +G K+++ LA+G
Sbjct: 63 PTASTHIKPDAVRPRKLLLKQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146
>gi|167763353|ref|ZP_02435480.1| hypothetical protein BACSTE_01727 [Bacteroides stercoris ATCC
43183]
gi|167698647|gb|EDS15226.1| hypothetical protein BACSTE_01727 [Bacteroides stercoris ATCC
43183]
Length = 150
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 98/145 (67%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 INIKNKRATFDYELVDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANSELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T++P++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELDKLQRGSKDPGFTIIPVRMFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K++D R R +
Sbjct: 126 KKQYDKREALKEKDDKRDMARAFKR 150
>gi|307298911|ref|ZP_07578713.1| SsrA-binding protein [Thermotogales bacterium mesG1.Ag.4.2]
gi|306915336|gb|EFN45721.1| SsrA-binding protein [Thermotogales bacterium mesG1.Ag.4.2]
Length = 147
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/141 (47%), Positives = 97/141 (68%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K V N+KAR+ YH++ S+EAGI L GTEVKSLR+ ++ D+Y E+ EI+L + I
Sbjct: 2 KTVVTNKKARFQYHLMDSYEAGIELVGTEVKSLRLGGASLIDAYCKIESGEIFLVDCNIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N +NH PRR R+LL+ ++EI RL + G+T++P+KIYFN KG AK+++ LA+
Sbjct: 62 LYTHGNVWNHEPRRKRRLLMHRKEILRLDQKTKEKGLTIIPLKIYFNDKGKAKVEICLAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKH 152
GK+ +DKRE KRD +R+
Sbjct: 122 GKRLFDKREDIAKRDVERRMR 142
>gi|238650880|ref|YP_002916736.1| SsrA-binding protein [Rickettsia peacockii str. Rustic]
gi|259511429|sp|C4K287|SSRP_RICPU RecName: Full=SsrA-binding protein
gi|238624978|gb|ACR47684.1| SsrA-binding protein [Rickettsia peacockii str. Rustic]
Length = 152
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 101/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA + Y I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAHNKKALFQYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRE+ K++DW R + R++R+
Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152
>gi|78189129|ref|YP_379467.1| SsrA-binding protein [Chlorobium chlorochromatii CaD3]
gi|123579753|sp|Q3ARF1|SSRP_CHLCH RecName: Full=SsrA-binding protein
gi|78171328|gb|ABB28424.1| SsrA-binding protein [Chlorobium chlorochromatii CaD3]
Length = 157
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS + + + +V NRKAR+ + I+ +F AGI L G+EVKS+R+ + ++++S+A
Sbjct: 1 MSKQPQQRYAEAIV--NRKARHEFEIIETFVAGIQLAGSEVKSVRLGQASLNESFAIILR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E+WL N I Y +R+RKLLL K+EI +L A V G+TLVP+K +F
Sbjct: 59 NEVWLENMQITPYKHNRMEVLEAKRSRKLLLHKKEIAKLQAKVSEKGLTLVPLKAFFTPH 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
GL KI+LA+A+GKK YDKRET K R+ R ++ ++++
Sbjct: 119 GLLKIELAIARGKKLYDKRETLKNRENQRHLDQLRKQYS 157
>gi|257066264|ref|YP_003152520.1| SsrA-binding protein [Anaerococcus prevotii DSM 20548]
gi|256798144|gb|ACV28799.1| SsrA-binding protein [Anaerococcus prevotii DSM 20548]
Length = 147
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA ++Y I +EAG+ L G+EVKS++ KV+I +S+ + E+++ ++
Sbjct: 2 KLLANNKKAYHDYFIEEKYEAGLSLLGSEVKSIKKGKVSIKESFISDRKGEMFIYGMHVT 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y QA + P R R+LLL K+EI++L + G T+VP+KIY GL K++LALA+
Sbjct: 62 PYSQAYDKDIDPTRTRRLLLHKKEINKLIGKKTQAGYTVVPLKIYERD-GLVKLELALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE+ K +D R+ R L+ +
Sbjct: 121 GKKQYDKRESIKAKDDKRKMDRALKNY 147
>gi|260911504|ref|ZP_05918092.1| SsrA-binding protein [Prevotella sp. oral taxon 472 str. F0295]
gi|260634368|gb|EEX52470.1| SsrA-binding protein [Prevotella sp. oral taxon 472 str. F0295]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+ + +K V N+KA + Y V +F AGIVLTGTE+KS+R+ K ++ DS+
Sbjct: 1 MGKETDSIRKKSAVQIRNKKASFEYFFVETFMAGIVLTGTEIKSIRLGKASLVDSFCYIN 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E+W+ I Y + NH +R+RKLLL+KREI +L A ++ G T+VP ++ +
Sbjct: 61 NGELWVKGMNISPYFYGSFANHEAKRDRKLLLTKREIRKLQEATKQVGFTIVPTLVFIDP 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+AL +GKK YDKR+T K+++ RQ R ++ +
Sbjct: 121 HGRAKVDIALVRGKKEYDKRQTLKEKEDRRQMDRAIKRY 159
>gi|158522707|ref|YP_001530577.1| SsrA-binding protein [Desulfococcus oleovorans Hxd3]
gi|158511533|gb|ABW68500.1| SsrA-binding protein [Desulfococcus oleovorans Hxd3]
Length = 162
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 65/145 (44%), Positives = 100/145 (68%), Gaps = 1/145 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V++N+KAR+++ + FEAG+VLTGTEVKSLR + N+ D+YA +N E++L +I
Sbjct: 16 KIVTENKKARHDFFLEDEFEAGMVLTGTEVKSLRGGRANLKDAYAKIKNGELFLYQMHIS 75
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A+ NH P R RKLL+ KRE+ +L + G +L+P+K+YF G AK+ +ALA+
Sbjct: 76 AYSFAHYDNHEPERPRKLLVHKRELKKLIGKINEKGYSLIPVKVYFKG-GKAKVAVALAK 134
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GK+ +DKRE+ K++D R+ R +
Sbjct: 135 GKRKFDKRESLKQKDAKRELDRARK 159
>gi|320534590|ref|ZP_08035039.1| SsrA-binding protein [Actinomyces sp. oral taxon 171 str. F0337]
gi|320133211|gb|EFW25710.1| SsrA-binding protein [Actinomyces sp. oral taxon 171 str. F0337]
Length = 178
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61
+ K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ +
Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIEIDRHG 77
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G
Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLKTRVQAKGYTVVPLELYFIG-G 136
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148
AK+++ALA+GK+++DKR+ ++
Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163
>gi|299140520|ref|ZP_07033658.1| SsrA-binding protein [Prevotella oris C735]
gi|298577486|gb|EFI49354.1| SsrA-binding protein [Prevotella oris C735]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 91/144 (63%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DS+ E+W+ I Y
Sbjct: 16 IRNKKASFEYFFVDTYTAGIVLTGTEIKSIRNGKASLVDSFCVLYKGELWVKGMNISPYF 75
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ NH +R+RKLLL+KRE+HRL ++ G T+VP ++ + G AKID+ALA+GKK
Sbjct: 76 YGSYSNHVAKRDRKLLLTKRELHRLEEDSKQVGFTIVPTLLFIDRHGRAKIDIALARGKK 135
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR+T +++ R+ R L+
Sbjct: 136 EFDKRQTLREKQDKREMDRALKHF 159
>gi|281423236|ref|ZP_06254149.1| SsrA-binding protein [Prevotella oris F0302]
gi|281402572|gb|EFB33403.1| SsrA-binding protein [Prevotella oris F0302]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/144 (40%), Positives = 91/144 (63%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA + Y + ++ AGIVLTGTE+KS+R K ++ DS+ E+W+ I Y
Sbjct: 16 IRNKKASFEYFFIDTYTAGIVLTGTEIKSIRNGKASLVDSFCVLYKGELWVKGMNISPYF 75
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ NH +R+RKLLL+KRE+HRL ++ G T+VP ++ + G AKID+ALA+GKK
Sbjct: 76 YGSYSNHVAKRDRKLLLTKRELHRLEEDSKQVGFTIVPTLLFIDRHGRAKIDIALARGKK 135
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR+T +++ R+ R L+
Sbjct: 136 EFDKRQTLREKQDKREMDRALKHF 159
>gi|56417184|ref|YP_154258.1| SsrA-binding protein [Anaplasma marginale str. St. Maries]
gi|67461309|sp|Q5P9M7|SSRP_ANAMM RecName: Full=SsrA-binding protein
gi|56388416|gb|AAV87003.1| small protein B homolog [Anaplasma marginale str. St. Maries]
Length = 149
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 74/145 (51%), Positives = 108/145 (74%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+V++NRKAR++Y +++ ++AG+VL G+EVKSLR KVN+ D+Y ++ E+W+ N +I E
Sbjct: 3 IVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y +A+R NH P R RKLLL KREIH++ ++ G+ +VP+ I+FN KG+AKI +A+ +G
Sbjct: 63 YNRADRKNHKPLRVRKLLLRKREIHKIAGNIKVSGLAVVPLMIFFNNKGIAKIKIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K RDW R+K RI R
Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147
>gi|260063092|ref|YP_003196172.1| SsrA-binding protein [Robiginitalea biformata HTCC2501]
gi|88784661|gb|EAR15831.1| SsrA-binding protein [Robiginitalea biformata HTCC2501]
Length = 153
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/150 (42%), Positives = 105/150 (70%), Gaps = 1/150 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69
K++ NR+AR++Y ++ ++ AGIVL GTE+KS+R K +I++ + F E+ E+++ N
Sbjct: 3 KQINIKNRRARFDYELLDTYVAGIVLAGTEIKSIRQGKASIAEGFCEFNEDGELFVINMQ 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ EY + FNH P+ RKLLL+K+E+ +L+ AV+ G T++P+ ++ N +GLAK+ +AL
Sbjct: 63 VDEYSHGSHFNHQPKAARKLLLNKQELGKLHKAVKTSGNTIIPLNLFINDRGLAKLRIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKR+T + R+ RQ R+ + N
Sbjct: 123 ARGKKQYDKRDTIRARESKRQLDRVKKAFN 152
>gi|329906753|ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480]
gi|327547155|gb|EGF32018.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480]
Length = 149
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ DNRKA ++Y + FEAG+ L G E KS+R +V + ++Y N+E++L ++I
Sbjct: 2 TIVDNRKAFHDYFVEERFEAGLSLQGWEAKSIRAGRVQLKEAYVIVRNNEVFLFGAHISA 61
Query: 73 YLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ + R RKLLL EI ++ V R G TLVP+ +++ G K+++ LA+
Sbjct: 62 LTSTSTHVHPEATRTRKLLLHAAEIKKMIIKVERSGYTLVPINLHYVG-GRIKLEVGLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKR TE+ RD R+ + ++ H
Sbjct: 121 GKKQHDKRATERDRDGQREVAQAMKTH 147
>gi|291515120|emb|CBK64330.1| SsrA-binding protein [Alistipes shahii WAL 8301]
Length = 153
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 99/151 (65%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ KK+ N++A ++Y I+ + AGIVL GTE+KS+R K ++ D++ F+ E+W+
Sbjct: 2 SEQKKINIRNKRATFDYEILEEYVAGIVLVGTEIKSIRAGKASMVDTFCYFDKGELWVRG 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I EY NH PRR+RKLLL+ RE+ +L A + G+T+V ++++ N +GLAK+ +
Sbjct: 62 VNIAEYAWGTCNNHVPRRDRKLLLTARELDKLQRASQDKGLTIVGLRLFLNERGLAKVVV 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+G+K+YDKRE K+ D R+ + ++ +
Sbjct: 122 GLARGRKSYDKREYLKENDARREMDKAMKNY 152
>gi|42526972|ref|NP_972070.1| SsrA-binding protein [Treponema denticola ATCC 35405]
gi|61216567|sp|Q73MP4|SSRP_TREDE RecName: Full=SsrA-binding protein
gi|41817396|gb|AAS11981.1| SsrA-binding protein [Treponema denticola ATCC 35405]
gi|325474035|gb|EGC77223.1| SsrA-binding protein [Treponema denticola F0402]
Length = 154
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
P K+++ N+KA +NY + E G+VL GTEVKSLR +++ D++A +++E+W+ N
Sbjct: 3 KTPVKIIAKNKKAFFNYTVEEKIECGLVLKGTEVKSLREGRISFPDAFAEIKDNEVWVKN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I EY+ ++ FNH P R +KLLL K EI RL V G TLVP++ YF G+ K+ L
Sbjct: 63 FHISEYIYSSVFNHDPERPKKLLLKKDEIKRLKRKVEEKGYTLVPLEFYFK-NGIVKVLL 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +GKK +DKR K RD R R ++
Sbjct: 122 GVCKGKKTFDKRADIKDRDIKRDMQREIKIR 152
>gi|304382999|ref|ZP_07365479.1| SsrA-binding protein [Prevotella marshii DSM 16973]
gi|304335871|gb|EFM02121.1| SsrA-binding protein [Prevotella marshii DSM 16973]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 96/146 (65%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ NRKA + Y + ++ AGIVLTGTE+KS+R+ K +++D++ N EIW+ +
Sbjct: 14 IQIRNRKASFEYFFIDTYTAGIVLTGTEIKSIRMGKASLTDTFCYINNGEIWVKGMNVSP 73
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH +R+RKLLL+KREIH+L A ++ G T+VP ++ + G AK+D+ALA+G
Sbjct: 74 YFYGSYNNHESKRDRKLLLNKREIHKLQEATKQVGFTIVPTLVFIDKNGRAKMDIALAKG 133
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR+T K ++ R+ R ++
Sbjct: 134 KKEYDKRQTLKAKEDKREMDRAIKRF 159
>gi|282876947|ref|ZP_06285797.1| SsrA-binding protein [Prevotella buccalis ATCC 35310]
gi|281300933|gb|EFA93252.1| SsrA-binding protein [Prevotella buccalis ATCC 35310]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 95/146 (65%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N+KA + Y + ++ AGIVLTGTE+KS+R+ K ++ D++ + EIW+ I
Sbjct: 14 IQIRNKKASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYIYHGEIWIKGMNISP 73
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N +R+RKLLL+KREI +L A ++ G T+VP ++ +A G AK+D+ALA+G
Sbjct: 74 YFYGSYSNPEAKRDRKLLLTKREIRKLEADLKVAGHTIVPTLVFIDAHGRAKVDIALAKG 133
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR+T K+++ R+ R ++
Sbjct: 134 KKEYDKRQTLKEKEDRREMDRAIKNF 159
>gi|160892164|ref|ZP_02073167.1| hypothetical protein BACUNI_04627 [Bacteroides uniformis ATCC 8492]
gi|270296216|ref|ZP_06202416.1| SsrA-binding protein [Bacteroides sp. D20]
gi|317480837|ref|ZP_07939918.1| SsrA-binding protein [Bacteroides sp. 4_1_36]
gi|156858642|gb|EDO52073.1| hypothetical protein BACUNI_04627 [Bacteroides uniformis ATCC 8492]
gi|270273620|gb|EFA19482.1| SsrA-binding protein [Bacteroides sp. D20]
gi|316902922|gb|EFV24795.1| SsrA-binding protein [Bacteroides sp. 4_1_36]
Length = 150
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 99/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y + ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N ++ E
Sbjct: 6 VNIKNKRATFDYELTDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHVAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHNARRERKLLLNKKELEKLMRGTKDPGFTIVPVRLFINEKGLAKLVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKQYDKRESLKEKDDKRDMARMFKR 150
>gi|329960970|ref|ZP_08299249.1| SsrA-binding protein [Bacteroides fluxus YIT 12057]
gi|328532256|gb|EGF59060.1| SsrA-binding protein [Bacteroides fluxus YIT 12057]
Length = 150
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELEKLTRGSKDPGFTIVPVRMFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKQYDKRESLKEKDDKRDMARMFKR 150
>gi|88607027|ref|YP_505836.1| SsrA-binding protein [Anaplasma phagocytophilum HZ]
gi|123494193|sp|Q2GIG5|SSRP_ANAPZ RecName: Full=SsrA-binding protein
gi|88598090|gb|ABD43560.1| SsrA-binding protein [Anaplasma phagocytophilum HZ]
Length = 149
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/145 (48%), Positives = 105/145 (72%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+V++NRK R+NY I+ ++AGIVL G+EVKSLR KV++ D+Y E+W+ N +I E
Sbjct: 3 IVAENRKVRFNYTILSEYDAGIVLLGSEVKSLRQHKVSMGDAYVLESGMELWVHNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y +++ NH P R RKLLL +REI+++ +V+ G+T+VP +YFN +GLAK+ +AL +G
Sbjct: 63 YNRSSYKNHSPLRVRKLLLRRREINKIAGSVKASGITVVPRLVYFNERGLAKVRIALVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K R+W+R+K R ++
Sbjct: 123 KKLYDKREAIKAREWEREKGRTMKR 147
>gi|294673536|ref|YP_003574152.1| SsrA-binding protein [Prevotella ruminicola 23]
gi|294472271|gb|ADE81660.1| SsrA-binding protein [Prevotella ruminicola 23]
Length = 160
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 94/142 (66%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA + Y V ++ AGIVLTGTE+KS+R+ K ++ D+Y N E+W+ + Y
Sbjct: 16 IRNKKASFEYFFVETYTAGIVLTGTEIKSIRLGKASLVDTYCVVLNGELWVKGMNVSPYF 75
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ NH +R+RKLLL+K+EI L +A ++ G T+VP ++ + KG AK+D+AL +GKK
Sbjct: 76 YGSYNNHEAKRDRKLLLTKKEIRALESATKQTGFTIVPTLVFIDDKGRAKVDVALCKGKK 135
Query: 135 NYDKRETEKKRDWDRQKHRILR 156
+DKR+T K+++ R+ R ++
Sbjct: 136 EFDKRQTLKEKEDRREMDRAMK 157
>gi|160883292|ref|ZP_02064295.1| hypothetical protein BACOVA_01261 [Bacteroides ovatus ATCC 8483]
gi|156111276|gb|EDO13021.1| hypothetical protein BACOVA_01261 [Bacteroides ovatus ATCC 8483]
Length = 150
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVIALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150
>gi|160947538|ref|ZP_02094705.1| hypothetical protein PEPMIC_01472 [Parvimonas micra ATCC 33270]
gi|158446672|gb|EDP23667.1| hypothetical protein PEPMIC_01472 [Parvimonas micra ATCC 33270]
Length = 155
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
R K ++ N+KAR++Y I +E GI L+GTEVKS+R KV+I +SY + +N E+++
Sbjct: 2 RDKTTIKTIASNKKARHDYFIEDIYEVGISLSGTEVKSIRQGKVSIKESYCSIKNGEVFI 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
I Y N +N P R RKLLL+KREI++L + G +L+P+ ++ G K+
Sbjct: 62 LGMNITPYDHGNIYNLEPTRERKLLLNKREINKLIGQTKEKGYSLIPLDVHIK-NGWIKL 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
D+ALA+GKKNYDKR++ +++ +R+ L+
Sbjct: 121 DIALARGKKNYDKRDSMLEKEHERKIQYALKNK 153
>gi|58584341|ref|YP_197914.1| SsrA-binding protein [Wolbachia endosymbiont strain TRS of Brugia
malayi]
gi|67461875|sp|Q5GTK2|SSRP_WOLTR RecName: Full=SsrA-binding protein
gi|58418657|gb|AAW70672.1| tmRNA-binding protein [Wolbachia endosymbiont strain TRS of Brugia
malayi]
Length = 149
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 78/146 (53%), Positives = 108/146 (73%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V+++NRKAR+ Y I+ FEAG+VL +EVKSLR KVNISD+Y T +N EIWL N +I E
Sbjct: 3 VIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVTEKNGEIWLHNMHIAE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y AN+ H P+R RKLLL K+EI++L + ++ G+T+VP+ IYFN KGL K +A+ +G
Sbjct: 63 YKAANKKKHKPKRERKLLLHKKEINKLISQIKTAGVTIVPLSIYFNDKGLVKTRIAIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR T K+R+W+R K R+ + +
Sbjct: 123 KKLYDKRATIKQREWNRAKSRLSKNN 148
>gi|225849335|ref|YP_002729499.1| SsrA-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643224|gb|ACN98274.1| SsrA-binding protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 152
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 69/145 (47%), Positives = 99/145 (68%), Gaps = 1/145 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA ++Y+I+ +EAGIVLTG+EVKSLR N+ DS+ E+ E WL N YI
Sbjct: 4 KVVATNKKAFHDYNILEKYEAGIVLTGSEVKSLREGACNLKDSFVIIEDGEAWLYNCYIA 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A++ H P R RKLLL KREI RL V+ G+T+VP+++YF G AK+++ALA+
Sbjct: 64 PYKPAHKLGHDPYRKRKLLLHKREILRLMGKVKEKGLTIVPLQVYFK-NGKAKVEIALAK 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GK Y+KRE K+++ R+ + +
Sbjct: 123 GKVKYEKREDIKEKETRREIEKQFK 147
>gi|160916282|ref|ZP_02078489.1| hypothetical protein EUBDOL_02309 [Eubacterium dolichum DSM 3991]
gi|158432006|gb|EDP10295.1| hypothetical protein EUBDOL_02309 [Eubacterium dolichum DSM 3991]
Length = 151
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+KV++ NRKA + Y + FEAGI L GTE+K+LR V + D+Y +F N E ++
Sbjct: 2 SARKVIAFNRKASHEYFLEDRFEAGIQLQGTEIKALRQGHVQLKDAYISFRNHEAFVKEM 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y NRFNH R RKLLL K EI +L V+ G T++P+ +Y KGLAK+++A
Sbjct: 62 HITAYAFGNRFNHDETRIRKLLLHKNEILKLEQKVKLKGYTIIPISVYL-EKGLAKMEIA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
LA+GK +DKR +K++D R+ + ++
Sbjct: 121 LAKGKDLHDKRNAQKEKDAKREIEKAMKNR 150
>gi|153807900|ref|ZP_01960568.1| hypothetical protein BACCAC_02186 [Bacteroides caccae ATCC 43185]
gi|149129509|gb|EDM20723.1| hypothetical protein BACCAC_02186 [Bacteroides caccae ATCC 43185]
Length = 150
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 101/145 (69%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFVKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR+RKLLLS++E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRDRKLLLSRKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150
>gi|295426335|ref|ZP_06818993.1| SsrA-binding protein [Lactobacillus amylolyticus DSM 11664]
gi|295063983|gb|EFG54933.1| SsrA-binding protein [Lactobacillus amylolyticus DSM 11664]
Length = 151
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 100/154 (64%), Gaps = 4/154 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ NRKAR++Y I + EAGI LTGTE+KS+R ++ + D Y N
Sbjct: 1 MKEK---NENLLAQNRKARHDYFIKETLEAGIALTGTEIKSVRARRITLKDGYIQIINGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY Q NR+NH P R+R+LLL K EI RL A G+T++P+K+Y G
Sbjct: 58 AFLENVHISEYKQGNRYNHDPLRSRRLLLHKNEIRRLAKAAEERGITIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
AK+ + LAQGKK YDKRET KKRD +R+ R R
Sbjct: 117 AKVLIGLAQGKKQYDKRETIKKRDQEREIRRKYR 150
>gi|255037234|ref|YP_003087855.1| SsrA-binding protein [Dyadobacter fermentans DSM 18053]
gi|254949990|gb|ACT94690.1| SsrA-binding protein [Dyadobacter fermentans DSM 18053]
Length = 152
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 98/144 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV NR+A + Y + F G+VLTGTE+KS+R KVN D+Y F + E+++ + +I
Sbjct: 7 KKVDIKNRRASFEYFFLEEFTTGMVLTGTEIKSIRQGKVNFQDAYCLFMDGELFIRSLHI 66
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + +NH P R+RKLL++KRE +L ++ G+T++P++++ + +GLAK+ +ALA
Sbjct: 67 SPYTEGTHYNHEPMRDRKLLITKRERKKLIEGLKDVGLTIIPVRLFTSERGLAKLHIALA 126
Query: 131 QGKKNYDKRETEKKRDWDRQKHRI 154
+GKK YDKR++ K+RD R+ R
Sbjct: 127 KGKKLYDKRDSIKERDVKRENDRA 150
>gi|313668089|ref|YP_004048373.1| small protein B homolog [Neisseria lactamica ST-640]
gi|313005551|emb|CBN86987.1| small protein B homolog [Neisseria lactamica 020-06]
Length = 148
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R RKLLL + EI++L R G T+VP+ ++F +G K+++ LA+G
Sbjct: 63 PTASTHIKPDAVRPRKLLLKQSEINKLIGKTERAGYTIVPLDLHF-LRGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146
>gi|288927707|ref|ZP_06421554.1| SsrA-binding protein [Prevotella sp. oral taxon 317 str. F0108]
gi|288330541|gb|EFC69125.1| SsrA-binding protein [Prevotella sp. oral taxon 317 str. F0108]
Length = 159
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+ + +K V N+KA + Y V +F AGIVLTGTE+KS+R+ K ++ DS+
Sbjct: 1 MGKETDSIRKKSAVQIRNKKASFEYFFVETFMAGIVLTGTEIKSIRMGKASLVDSFCYIN 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E+W+ I Y + NH +R+RKLLL+KREI +L A ++ G T+VP ++ +
Sbjct: 61 NGEMWVKGMNISPYFYGSYANHEAKRDRKLLLTKREIRKLQEATKQVGFTIVPTLVFIDP 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+AL +GKK +DKR+T K+++ RQ R ++ +
Sbjct: 121 HGRAKVDIALVRGKKEFDKRQTLKEKEDRRQMDRAIKRY 159
>gi|320106631|ref|YP_004182221.1| SsrA-binding protein [Terriglobus saanensis SP1PR4]
gi|319925152|gb|ADV82227.1| SsrA-binding protein [Terriglobus saanensis SP1PR4]
Length = 176
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+ + NR A +NY ++ FE G+ L GTEVKS+R K N+ D+Y ++ E +L N++
Sbjct: 26 GDRDAAINRSASHNYFLLDKFECGVALQGTEVKSIREGKANLKDAYGLLKDGEAFLLNAH 85
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I + N NH R R+LLL K+E+ +L + G TL+P ++YF G K +LAL
Sbjct: 86 IGPFSHGNLMNHDATRTRRLLLHKQELRKLEVKTNQKGFTLIPTRLYFRG-GKVKCELAL 144
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GK+++DKRE+E+KR+ D++ +
Sbjct: 145 AKGKQDWDKRESERKREVDKETRSAIAR 172
>gi|149909300|ref|ZP_01897956.1| SsrA-binding protein [Moritella sp. PE36]
gi|149807617|gb|EDM67565.1| SsrA-binding protein [Moritella sp. PE36]
Length = 159
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + ++ N+ A + Y I EAG+ L G EVKSLR KVNI++ Y +N
Sbjct: 1 MAKK-KPKKSENTIARNKTASFEYKIEDRLEAGLELQGWEVKSLRAGKVNITECYVFIKN 59
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +++ + I + P R RKLLL+KRE+ L + V R G T+V +Y+
Sbjct: 60 GEAFMSGAQIMPLDTASTHVVCNPTRIRKLLLNKRELEVLASKVERQGYTIVATSMYWKQ 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ LA+GKK +DKR K R+W K R+++
Sbjct: 120 -AWVKVNIGLAKGKKEHDKRSDVKDREWKIDKERMMKHK 157
>gi|303235567|ref|ZP_07322174.1| SsrA-binding protein [Prevotella disiens FB035-09AN]
gi|302484014|gb|EFL47002.1| SsrA-binding protein [Prevotella disiens FB035-09AN]
Length = 159
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 92/144 (63%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA + Y+ + ++ AGIVLTGTE+KS+R K ++ D++ E+W+ N I Y
Sbjct: 16 IRNKKASFEYYFIDTYTAGIVLTGTEIKSIRAGKASLVDTFCFINKGEMWVENMNISPYF 75
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+ NH RR RKLLL+KREI RL + G T+VP ++ + KG AK+D+AL +GKK
Sbjct: 76 YGSYSNHEARRKRKLLLNKREIKRLEEESKTPGYTIVPTLVFIDDKGHAKVDIALCRGKK 135
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKR+T K+++ R+ R ++ +
Sbjct: 136 EYDKRQTLKEKEDRREMDRAIKNY 159
>gi|237737596|ref|ZP_04568077.1| SsrA-binding protein [Fusobacterium mortiferum ATCC 9817]
gi|229419476|gb|EEO34523.1| SsrA-binding protein [Fusobacterium mortiferum ATCC 9817]
Length = 150
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ N+KA ++Y I FEAGI L G+EVKS + KV+I +S+ N E+++ I
Sbjct: 6 VLAGNKKAYFDYFIEDKFEAGIELVGSEVKSAKAGKVSIKESFIRIINGEVFIMGMSIVP 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL K+EI +L+ V + G T+VP+ I+ + KG K+ +ALA+G
Sbjct: 66 WSFGSVYNPEERRVRKLLLHKKEIRKLHEKVTQKGYTIVPLDIHLS-KGYVKVSIALARG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE+ KRD R R+ +
Sbjct: 125 KKTYDKRESIAKRDAQRDIQRMTKIR 150
>gi|269119401|ref|YP_003307578.1| SsrA-binding protein [Sebaldella termitidis ATCC 33386]
gi|268613279|gb|ACZ07647.1| SsrA-binding protein [Sebaldella termitidis ATCC 33386]
Length = 148
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ +E+++ N ++ Y
Sbjct: 3 IARNKKAFHDYFIEEKLEAGIELHGTEVKSIKNGKVSIKESFIRIIKNEVFIMNMHVSNY 62
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
N N R RKLLL ++EI +L + G TL+P+ IY + L K+++ LA+GK
Sbjct: 63 EFGNINNLPETRVRKLLLHRKEIEKLMGKIAEKGYTLIPLNIYTKNR-LVKVEMGLAKGK 121
Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159
K YDKRE K++D R R +++ N
Sbjct: 122 KLYDKREDLKRKDQKRDIERSIKDFN 147
>gi|152997969|ref|YP_001342804.1| SsrA-binding protein [Marinomonas sp. MWYL1]
gi|226734258|sp|A6W2E0|SSRP_MARMS RecName: Full=SsrA-binding protein
gi|150838893|gb|ABR72869.1| SsrA-binding protein [Marinomonas sp. MWYL1]
Length = 159
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS + + ++ N++A+Y+Y + + FEAG+VL+G EVKSLR K + D++
Sbjct: 1 MSKVKKKSTSTGTIALNKRAKYDYFVDQKFEAGLVLSGWEVKSLREGKAQLVDAFVIIHQ 60
Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E WL + P + P R RKLLL+++E+ R+ + G T M +Y+
Sbjct: 61 NEAWLVGARITPLLSASTHVVCEPMRQRKLLLNRKELERIIQVTEQKGKTCAAMALYWKG 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K ++AL GKK +DKR+TE+ RDW R K R+++ +
Sbjct: 121 N-KIKCEVALVTGKKEHDKRDTERDRDWSRDKERLMKHN 158
>gi|239787347|emb|CAX83824.1| SsrA-binding protein [uncultured bacterium]
Length = 153
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 103/147 (70%), Gaps = 2/147 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND--EIWLTNSY 69
KV++ N+ A+++Y ++ EAGIVLTG EVKS R+ ++I +S+ E++L N+
Sbjct: 4 KVIALNKLAKFDYSLLEVIEAGIVLTGFEVKSARLGGISIRESHVGEMQGSGELYLFNAN 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
PEY+ A P+R RKLLL +R+I++L V R G T++P+++YFN KG+ KI++AL
Sbjct: 64 FPEYIHATTMKQEPKRPRKLLLGRRQINKLLGQVHRKGFTIIPVQMYFNEKGIIKIEIAL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156
AQGK DKRET K R+WDR+KHR+L+
Sbjct: 124 AQGKNVVDKRETIKLREWDREKHRVLK 150
>gi|297571767|ref|YP_003697541.1| SsrA-binding protein [Arcanobacterium haemolyticum DSM 20595]
gi|296932114|gb|ADH92922.1| SsrA-binding protein [Arcanobacterium haemolyticum DSM 20595]
Length = 182
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 2/146 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIP 71
V++ N+KAR++Y I FEAG+VL+GTEVK+LR+ + ++++++ + E W+ IP
Sbjct: 32 VIARNKKARHDYFIDDVFEAGLVLSGTEVKALRLGRASLTEAWIEIDRSGEAWVVGMNIP 91
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + NH P RKLLL E+ L V+ G T+VP+++YF G AK+++ALA
Sbjct: 92 VYAMGSWTNHKPTAKRKLLLHGHELRELGVKVKAKGTTIVPLELYFLG-GRAKLEIALAH 150
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GK+ +DKRET ++R +R R + +
Sbjct: 151 GKQEWDKRETLRRRQDERDAQRAMSD 176
>gi|313124448|ref|YP_004034707.1| ssra-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
gi|312281011|gb|ADQ61730.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ND02]
Length = 153
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + V++ NR+AR++Y I ++EAGI LTGTE+KS+R V + D Y N
Sbjct: 1 MKQKAKD-ENVLAQNRQARHDYFIKDTYEAGIALTGTEIKSVRARHVTLRDGYVQIINGS 59
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL K+EI +L + GMT+VP+K+Y G
Sbjct: 60 AFLENVHIDEYKEGNRYNHDPLRSRRLLLHKKEIAKLAEVKVQKGMTIVPLKVYLK-HGF 118
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
AK+ + +AQGKK YDKRET KKRD DR+ R R
Sbjct: 119 AKVLIGVAQGKKEYDKRETIKKRDQDRELRRKYR 152
>gi|325108952|ref|YP_004270020.1| SsrA-binding protein [Planctomyces brasiliensis DSM 5305]
gi|324969220|gb|ADY59998.1| SsrA-binding protein [Planctomyces brasiliensis DSM 5305]
Length = 165
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V+ NR+AR++Y I+ E GIVL G+EVKS+R S+++I +S+A +N E+WL +I E
Sbjct: 17 TVAVNRRARHDYEILDEIECGIVLHGSEVKSIRNSQISIEESFAHTQNGELWLQGCHIGE 76
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y QAN NH PRR+RKLLL ++EI + A ++ G+TLVP+ +YF +GL K+ + +A+G
Sbjct: 77 YPQANVMNHIPRRHRKLLLHRKEIRKFAEAAKQKGLTLVPLSVYFR-RGLVKVKVGVARG 135
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
+K +DKR+ KK R+ + ++
Sbjct: 136 RKLHDKRDKLKKDAAQREMKAAMAKN 161
>gi|104774566|ref|YP_619546.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116514687|ref|YP_813593.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|300811194|ref|ZP_07091703.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|122274581|sp|Q048G7|SSRP_LACDB RecName: Full=SsrA-binding protein
gi|122396965|sp|Q1G8P4|SSRP_LACDA RecName: Full=SsrA-binding protein
gi|103423647|emb|CAI98601.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC 11842]
gi|116094002|gb|ABJ59155.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
ATCC BAA-365]
gi|300497812|gb|EFK32825.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
PB2003/044-T3-4]
gi|325125646|gb|ADY84976.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus
2038]
gi|325685484|gb|EGD27579.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 153
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 2/154 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + V++ NR+AR++Y I ++EAGI LTGTE+KS+R V + D Y N
Sbjct: 1 MKQKAKD-ENVLAQNRQARHDYFIKDTYEAGIALTGTEIKSVRARHVTLRDGYVQIINGS 59
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY + NR+NH P R+R+LLL K+EI +L + GMT+VP+K+Y G
Sbjct: 60 AFLENVHIDEYKEGNRYNHDPLRSRRLLLHKKEIAKLADVKAQKGMTIVPLKVYLK-HGF 118
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
AK+ + +AQGKK YDKRET KKRD DR+ R R
Sbjct: 119 AKVLIGVAQGKKEYDKRETIKKRDQDRELRRKYR 152
>gi|110597949|ref|ZP_01386230.1| SsrA-binding protein [Chlorobium ferrooxidans DSM 13031]
gi|110340398|gb|EAT58887.1| SsrA-binding protein [Chlorobium ferrooxidans DSM 13031]
Length = 157
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + + NRKARY + I+ +F GI L G+EVKS+R+ K +++DS+A
Sbjct: 1 MSKKQTTQHYVQAI-QNRKARYEFEILDTFVTGIQLFGSEVKSVRLGKASLNDSFAIILR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+E+WL N I Y + P+R+RKLLL K EI ++ A + G+TLV +K +F++K
Sbjct: 60 NEVWLENMQITPYEHNHLEMLEPKRSRKLLLHKAEILKIQAKITEKGLTLVALKAFFSSK 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL KI++A+A+GKK YDKRET K R+ RQ ++ +++
Sbjct: 120 GLLKIEIAIAKGKKLYDKRETIKARENQRQMEQVRKQY 157
>gi|330998492|ref|ZP_08322315.1| SsrA-binding protein [Paraprevotella xylaniphila YIT 11841]
gi|329568320|gb|EGG50130.1| SsrA-binding protein [Paraprevotella xylaniphila YIT 11841]
Length = 156
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 100/156 (64%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + N K + N++A +++ ++ + AGIVLTGTE+KS+R K ++ D++ N E
Sbjct: 1 MAEKKNKTKSINIKNKRASFDFLLLDKYTAGIVLTGTEIKSIRAGKASLVDTFCFIHNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+W+ N Y+ EY + NH RR+RKLLL+++EI +L ++ G TLVP ++ + G
Sbjct: 61 VWVKNMYVAEYSYGSYNNHAARRDRKLLLNRKEIRKLQQEMKSPGFTLVPTLLFIDENGR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+D+ L +GKK YDKR+T K+++ R+ R ++ +
Sbjct: 121 AKVDVYLCRGKKEYDKRQTLKEKEDRREIDRQVKRY 156
>gi|296124400|ref|YP_003632178.1| SsrA-binding protein [Planctomyces limnophilus DSM 3776]
gi|296016740|gb|ADG69979.1| SsrA-binding protein [Planctomyces limnophilus DSM 3776]
Length = 160
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 4/160 (2%)
Query: 1 MSLKSR---GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ KS+ P V NR+AR+ Y ++ + GIVL G+EVKS+R KV+I +++
Sbjct: 1 MAAKSKPEDDKPNNISVCRNRRARHEYELMDQLDCGIVLMGSEVKSIRAGKVSIEEAWVR 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
++ E++L I EY QA+ NH +R RKLL +RE+ + +T+VP+++Y
Sbjct: 61 VQDGELYLVGCDINEYPQASWLNHETKRTRKLLAHRRELKKFCGRTSERSITIVPLEMYL 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+G KI +ALA+G+K +DKRE K +D R+ ++ R
Sbjct: 121 -QRGFVKIKIALAKGRKLHDKREKLKAQDARREIRQVTRR 159
>gi|237715883|ref|ZP_04546364.1| SsrA-binding protein [Bacteroides sp. D1]
gi|237722342|ref|ZP_04552823.1| SsrA-binding protein [Bacteroides sp. 2_2_4]
gi|262407497|ref|ZP_06084045.1| SsrA-binding protein [Bacteroides sp. 2_1_22]
gi|293372003|ref|ZP_06618402.1| SsrA-binding protein [Bacteroides ovatus SD CMC 3f]
gi|294646844|ref|ZP_06724465.1| SsrA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294808880|ref|ZP_06767609.1| SsrA-binding protein [Bacteroides xylanisolvens SD CC 1b]
gi|229443530|gb|EEO49321.1| SsrA-binding protein [Bacteroides sp. D1]
gi|229448152|gb|EEO53943.1| SsrA-binding protein [Bacteroides sp. 2_2_4]
gi|262354305|gb|EEZ03397.1| SsrA-binding protein [Bacteroides sp. 2_1_22]
gi|292633014|gb|EFF51596.1| SsrA-binding protein [Bacteroides ovatus SD CMC 3f]
gi|292637789|gb|EFF56186.1| SsrA-binding protein [Bacteroides ovatus SD CC 2a]
gi|294443922|gb|EFG12660.1| SsrA-binding protein [Bacteroides xylanisolvens SD CC 1b]
Length = 150
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLLSK+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRERKLLLSKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150
>gi|189466576|ref|ZP_03015361.1| hypothetical protein BACINT_02951 [Bacteroides intestinalis DSM
17393]
gi|189434840|gb|EDV03825.1| hypothetical protein BACINT_02951 [Bacteroides intestinalis DSM
17393]
Length = 150
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 99/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRMGKASLVDTFCYFANGELWVKNMHISE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHSARRERKLLLTKKELDKLARGAKDPGFTMVPVRMFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K++D R R+ +
Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150
>gi|224540345|ref|ZP_03680884.1| hypothetical protein BACCELL_05258 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518036|gb|EEF87141.1| hypothetical protein BACCELL_05258 [Bacteroides cellulosilyticus
DSM 14838]
Length = 150
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 99/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRMGKASLVDTFCYFANGELWVKNMHISE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHSARRERKLLLTKKELDKLARGAKDPGFTMVPIRMFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K++D R R+ +
Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150
>gi|120436616|ref|YP_862302.1| SsrA-binding protein [Gramella forsetii KT0803]
gi|187611480|sp|A0M3P0|SSRP_GRAFK RecName: Full=SsrA-binding protein
gi|117578766|emb|CAL67235.1| SsrA-binding protein [Gramella forsetii KT0803]
Length = 157
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 100/146 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ NRKA++NY + + AGI L GTE+K++R K NI++S+ F N E+++ N ++ E
Sbjct: 11 INIKNRKAKFNYEFLDKYTAGIKLAGTEIKAIREGKANIAESFCEFNNHELFVINMHVEE 70
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A FNH PR RKLLL +RE+ +L V G+T++P++++ N +GLAK+ ++LA+G
Sbjct: 71 YSHATHFNHNPRSQRKLLLQRRELRKLEKEVTNSGLTIIPLRLFINDRGLAKLQISLAKG 130
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRET K R+ R+ RI +E+
Sbjct: 131 KKLYDKRETIKDRESKRRLDRIQKEY 156
>gi|325956173|ref|YP_004286783.1| SsrA-binding protein [Lactobacillus acidophilus 30SC]
gi|325332738|gb|ADZ06646.1| SsrA-binding protein [Lactobacillus acidophilus 30SC]
Length = 152
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 99/148 (66%), Gaps = 1/148 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + +++ N+KAR++Y I ++EAGI LTGTE+KS+R ++N+ D Y N +L
Sbjct: 2 KKEKDENLIAQNKKARHDYFIKETYEAGIALTGTEIKSVRARRINLRDGYVQIINGSAFL 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY Q NR+NH P R+R+LLL K+EI+RL A G+ ++P+K+Y G AK+
Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEINRLAKAQAERGIAIIPLKVYLK-HGFAKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153
+ + QGKK YDKR+T K+RD R+ HR
Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIHR 148
>gi|227495729|ref|ZP_03926040.1| tmRNA-binding protein [Actinomyces urogenitalis DSM 15434]
gi|226834749|gb|EEH67132.1| tmRNA-binding protein [Actinomyces urogenitalis DSM 15434]
Length = 176
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEI 63
+ K ++ N+KA ++Y I +EAG+ LTGTEVK+LR+ + ++++++ + E
Sbjct: 18 KAASDAHKTIARNKKASHDYFIEDRYEAGLSLTGTEVKALRMGRASLTEAWIEIDRHGEA 77
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G A
Sbjct: 78 WLQGAHIPEYLQGTWNNHSPRRKRKLLLHRAELERLAQRVQAKGYTVVPLELYFIG-GRA 136
Query: 124 KIDLALAQGKKNYDKRETEKKRDWD 148
KI++ALA+GK+++DKR+ ++
Sbjct: 137 KIEIALARGKQDWDKRQALREAQDK 161
>gi|53714487|ref|YP_100479.1| SsrA-binding protein [Bacteroides fragilis YCH46]
gi|60682510|ref|YP_212654.1| SsrA-binding protein [Bacteroides fragilis NCTC 9343]
gi|253564989|ref|ZP_04842445.1| SsrA-binding protein [Bacteroides sp. 3_2_5]
gi|255010614|ref|ZP_05282740.1| SsrA-binding protein [Bacteroides fragilis 3_1_12]
gi|265766054|ref|ZP_06094095.1| SsrA-binding protein [Bacteroides sp. 2_1_16]
gi|313148425|ref|ZP_07810618.1| SsrA-binding protein [Bacteroides fragilis 3_1_12]
gi|61216468|sp|Q64RD6|SSRP_BACFR RecName: Full=SsrA-binding protein
gi|81314429|sp|Q5LAY7|SSRP_BACFN RecName: Full=SsrA-binding protein
gi|52217352|dbj|BAD49945.1| SsrA-binding protein [Bacteroides fragilis YCH46]
gi|60493944|emb|CAH08735.1| putative SsrA-binding protein [Bacteroides fragilis NCTC 9343]
gi|251946454|gb|EES86831.1| SsrA-binding protein [Bacteroides sp. 3_2_5]
gi|263253722|gb|EEZ25187.1| SsrA-binding protein [Bacteroides sp. 2_1_16]
gi|301163969|emb|CBW23524.1| putative SsrA-binding protein [Bacteroides fragilis 638R]
gi|313137192|gb|EFR54552.1| SsrA-binding protein [Bacteroides fragilis 3_1_12]
Length = 150
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 INIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFAKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR+RKLLLSK+E+++L + G T+VP++++ N +GLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHAARRDRKLLLSKKELNKLERGTKDAGFTIVPVRLFINERGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K++D R R+ +
Sbjct: 126 KKQYDKREALKEKDDRRDMDRMFKR 150
>gi|329769894|ref|ZP_08261293.1| SsrA-binding protein [Gemella sanguinis M325]
gi|328837948|gb|EGF87572.1| SsrA-binding protein [Gemella sanguinis M325]
Length = 154
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 62/151 (41%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
N +V++ N+KA ++Y I ++EAG+VLTGTE+KS+R +VN+ DSY E+++ N
Sbjct: 2 NKESRVIAQNKKASHDYFIEDTYEAGLVLTGTEIKSIRRGRVNLKDSYCQTRRGEMFVYN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + + NRFNH P R RKLLL K++I L A G++++P+K+Y G AK+ +
Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIAILTNAQNEAGISIIPLKLYIK-NGYAKLLI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKKNYDKR K+++ +++ +R L++
Sbjct: 121 GVAKGKKNYDKRHVLKQKEANKEINRALKDK 151
>gi|109898059|ref|YP_661314.1| SsrA-binding protein [Pseudoalteromonas atlantica T6c]
gi|122972039|sp|Q15V28|SSRP_PSEA6 RecName: Full=SsrA-binding protein
gi|109700340|gb|ABG40260.1| SsrA-binding protein [Pseudoalteromonas atlantica T6c]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ N+KAR++Y + EAGI L G EVKS+R KVN+SDSY T E
Sbjct: 2 KSKKSKSTNNTIALNKKARHDYILQDKIEAGIELQGWEVKSIRSGKVNLSDSYVTLHKGE 61
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L S I Q ++ P R RKLLL+KRE+ +L +V R G +++ +Y+ K
Sbjct: 62 AFLVGSTIQPLNQASSHVVCEPLRQRKLLLNKRELDKLIGSVERQGYSILATAMYWK-KN 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ L +GK +DKR+ K RDW R K R+++
Sbjct: 121 WVKVEIYLGKGKHEHDKRDAVKDRDWARDKERMMKHK 157
>gi|262199989|ref|YP_003271198.1| SsrA-binding protein [Haliangium ochraceum DSM 14365]
gi|262083336|gb|ACY19305.1| SsrA-binding protein [Haliangium ochraceum DSM 14365]
Length = 162
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 5/161 (3%)
Query: 1 MSLKSRGNP----PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56
M+ K+R +V++ NR+A ++Y I EAGIVL G+EVKSLR S +++D++A
Sbjct: 1 MAKKNRRQTTIPEGARVLARNRRALHDYEIHDVVEAGIVLVGSEVKSLRDSHAHLNDAHA 60
Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
++DE WL N+ I EY AN+FNH P R RKLLL K EI RL ++ G TLVP+ +Y
Sbjct: 61 EIQSDEAWLINAKIEEYPWANQFNHEPTRRRKLLLHKHEISRLGIKTQQRGFTLVPLAVY 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K++LAL GKK Y+KR ++ + R R L+
Sbjct: 121 LKD-GKIKVELALGSGKKEYEKRNVTRETEAQRDIDRALKR 160
>gi|323343201|ref|ZP_08083432.1| SsrA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463265|gb|EFY08460.1| SsrA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 146
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 1/145 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
VV+ NRKA + Y I +EAGIVLTGTE+KS+R KV + D++ + N E ++ +I +
Sbjct: 3 VVAKNRKAFHEYFIEDRYEAGIVLTGTEIKSVRQGKVQLKDAFISIVNGEAFIKGMHIAQ 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ Q NRFNH R RKLLL + EI +L A + G T+VP+ ++ + +G AK+++A A+G
Sbjct: 63 FEQGNRFNHDETRERKLLLHQHEIEKLVKAQQLQGYTIVPLDLHLS-RGRAKLEIATAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
K +DKR+ EK+R R + ++
Sbjct: 122 KHLFDKRQVEKERSIKRDIEKAMKR 146
>gi|302670657|ref|YP_003830617.1| SsrA-binding protein SmpB [Butyrivibrio proteoclasticus B316]
gi|302395130|gb|ADL34035.1| SsrA-binding protein SmpB [Butyrivibrio proteoclasticus B316]
Length = 159
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ +K+V++N+KA ++Y I +EAGI L GTEVKS+R K +I +++ + + E ++
Sbjct: 8 DKARKLVANNKKAYHDYFIEEKYEAGIELFGTEVKSIRQGKCSIKEAWISIDKGEAFIMG 67
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+ Y + N FN P R +KLLL K EI +L G TLVP+++YF G K+++
Sbjct: 68 MNVSPYEKGNIFNKDPLRVKKLLLHKAEIRKLDQQKMVQGYTLVPLEVYFK-NGKVKVEV 126
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILR 156
LA+GKK YDKR K+D R+ R +
Sbjct: 127 GLAKGKKLYDKRADMAKKDQQREALRDYK 155
>gi|298484478|ref|ZP_07002631.1| SsrA-binding protein [Bacteroides sp. D22]
gi|299146369|ref|ZP_07039437.1| SsrA-binding protein [Bacteroides sp. 3_1_23]
gi|295087568|emb|CBK69091.1| SsrA-binding protein [Bacteroides xylanisolvens XB1A]
gi|298269368|gb|EFI10976.1| SsrA-binding protein [Bacteroides sp. D22]
gi|298516860|gb|EFI40741.1| SsrA-binding protein [Bacteroides sp. 3_1_23]
Length = 150
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150
>gi|295398255|ref|ZP_06808300.1| SsrA-binding protein [Aerococcus viridans ATCC 11563]
gi|294973514|gb|EFG49296.1| SsrA-binding protein [Aerococcus viridans ATCC 11563]
Length = 157
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K VV+ NRKA +++ I+ + E G+VLTGTE+KS+R S++N+ D +A E
Sbjct: 1 MAKGKKVQKNDDNVVARNRKANHDFTILDTIECGVVLTGTEIKSVRQSRLNLKDGFARIE 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ N +I E+ Q N FNH P R RKLLL K EI +L +R+G TLVP+K+Y
Sbjct: 61 RGEVWMYNVHISEFEQGNMFNHDPLRPRKLLLKKAEISKLLKETQREGHTLVPLKVYIK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+G AK+ L +A+GKK YDKR K++D R+ R L+
Sbjct: 120 RGYAKVLLGVAEGKKKYDKRRALKEKDMKREAQRALK 156
>gi|116074409|ref|ZP_01471671.1| SsrA-binding protein [Synechococcus sp. RS9916]
gi|116069714|gb|EAU75466.1| SsrA-binding protein [Synechococcus sp. RS9916]
Length = 221
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
++++DNR AR+ Y I+ + E G+ L GTEVKS+R + N+ D + N ++
Sbjct: 68 KDDKDKPRILADNRFARHQYDILETLETGVELLGTEVKSVRAGQTNLRDGFCLIRNGQMQ 127
Query: 65 LTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
L N +I + A + FNH P R R+LL ++EI++L + + G+TLVP+ ++
Sbjct: 128 LHNVHISPHTHAGSYFNHDPLRVRRLLAHRKEINKLRIELDQKGLTLVPLNLHLKGS-WI 186
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ + L +G+K +DKR EK++ ++ L +
Sbjct: 187 KLTIGLCKGRKLHDKRAAEKEKQTKKETRAALSRY 221
>gi|332173390|gb|AEE22644.1| SsrA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5]
Length = 158
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ N+KAR++Y + EAGI L G EVKS+R KVN+SDSY T E
Sbjct: 2 KTKKSKSTNNTIALNKKARHDYILQDKIEAGIELQGWEVKSIRSGKVNLSDSYVTLHKGE 61
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+L S I Q ++ P R RKLLL+KRE+ +L +V R G +++ +Y+ K
Sbjct: 62 AFLVGSTIQPLNQASSHVVCEPLRQRKLLLNKRELDKLIGSVERQGYSILATAMYWK-KN 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+++ L +GK +DKR+ K RDW R K R+++
Sbjct: 121 WVKVEIYLGKGKHEHDKRDAVKDRDWARDKERMMKHK 157
>gi|242277685|ref|YP_002989814.1| SsrA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|259511418|sp|C6BVR1|SSRP_DESAD RecName: Full=SsrA-binding protein
gi|242120579|gb|ACS78275.1| SsrA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 155
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 3/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +P ++ N++AR NY V + EAG+VL GTEVKSLR V+ D Y F+
Sbjct: 1 MAKKKKKSPSS--IALNKQARRNYEFVETLEAGLVLKGTEVKSLRQGLVSFMDGYINFKE 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL +I Y A H P R RKLLL REI +L + V + G+T+VP+++YF+ +
Sbjct: 59 GEAWLVGIHIAPYDHAGYTQHEPDRPRKLLLHAREIEKLQSRVEQKGLTVVPVRLYFS-R 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+++ALA+G+ ++++E K+RD R R L +
Sbjct: 118 GKIKLEIALAKGRNVHNRKEELKRRDIARDTARQLANY 155
>gi|227879170|ref|ZP_03997044.1| tmRNA-binding protein [Lactobacillus crispatus JV-V01]
gi|256844760|ref|ZP_05550244.1| SsrA-binding protein [Lactobacillus crispatus 125-2-CHN]
gi|256850626|ref|ZP_05556051.1| SsrA-binding protein [Lactobacillus crispatus MV-1A-US]
gi|262047930|ref|ZP_06020874.1| SsrA-binding protein [Lactobacillus crispatus MV-3A-US]
gi|293382019|ref|ZP_06627978.1| SsrA-binding protein [Lactobacillus crispatus 214-1]
gi|295692312|ref|YP_003600922.1| ssra-binding protein [Lactobacillus crispatus ST1]
gi|312977851|ref|ZP_07789597.1| SsrA-binding protein [Lactobacillus crispatus CTV-05]
gi|227861237|gb|EEJ68882.1| tmRNA-binding protein [Lactobacillus crispatus JV-V01]
gi|256613122|gb|EEU18327.1| SsrA-binding protein [Lactobacillus crispatus 125-2-CHN]
gi|256712494|gb|EEU27490.1| SsrA-binding protein [Lactobacillus crispatus MV-1A-US]
gi|260571763|gb|EEX28340.1| SsrA-binding protein [Lactobacillus crispatus MV-3A-US]
gi|290921420|gb|EFD98463.1| SsrA-binding protein [Lactobacillus crispatus 214-1]
gi|295030418|emb|CBL49897.1| SsrA-binding protein [Lactobacillus crispatus ST1]
gi|310895158|gb|EFQ44226.1| SsrA-binding protein [Lactobacillus crispatus CTV-05]
Length = 152
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 66/148 (44%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y N + WL
Sbjct: 2 KKEKEDNLIAQNKKARHDYFIKETLEAGIALTGTEIKSVRARRINLRDGYVQIVNGQAWL 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY Q NR+NH P R+R+LLL K+EI RL A G+ ++P+K+Y G AK+
Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEIARLAKAQSERGIAIIPLKVYLK-HGFAKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153
+ + QGKK YDKR+T K+RD R R
Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKRDIRR 148
>gi|188997012|ref|YP_001931263.1| SsrA-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
gi|229559895|sp|B2V9T6|SSRP_SULSY RecName: Full=SsrA-binding protein
gi|188932079|gb|ACD66709.1| SsrA-binding protein [Sulfurihydrogenibium sp. YO3AOP1]
Length = 152
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+KVV+ N+KA ++Y I+ +EAGIVLTG+EVKSLR N+ DS+ E+ E WL N Y
Sbjct: 2 SEKVVATNKKAFHDYAILEKYEAGIVLTGSEVKSLREGACNLKDSFVMIEDGEAWLYNCY 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y A +F H P R RKLLL K+EI +L V+ G+T+VP+++YF G AK+++AL
Sbjct: 62 IAPYKPAAKFGHDPTRKRKLLLHKKEILKLMGKVKEKGLTIVPLRVYFK-NGKAKVEIAL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156
A+GK Y+KRE K++D R+ + +
Sbjct: 121 AKGKVKYEKREAMKEKDMKREIEKSFK 147
>gi|258406134|ref|YP_003198876.1| SsrA-binding protein [Desulfohalobium retbaense DSM 5692]
gi|257798361|gb|ACV69298.1| SsrA-binding protein [Desulfohalobium retbaense DSM 5692]
Length = 151
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KVV+ NRKAR+ + + EAG+VLTG+EVKSLR +++ D Y F E +L
Sbjct: 2 SGIKVVAQNRKARHYFEFIEFIEAGLVLTGSEVKSLRAGRISFKDGYVQFRGGEAFLVGV 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
+I Y A H P + RKLLL +REI L V + G+T+VP K+Y G K++LA
Sbjct: 62 HIAHYENAGYAGHDPDQPRKLLLHRREIASLRGKVEQKGLTMVPTKVYLK-NGRFKVELA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+GK D+R+ K++ R R + +
Sbjct: 121 LARGKNVRDRRQELKQKAIQRDMDREMAK 149
>gi|308233686|ref|ZP_07664423.1| SsrA-binding protein [Atopobium vaginae DSM 15829]
gi|328943364|ref|ZP_08240829.1| SsrA-binding protein [Atopobium vaginae DSM 15829]
gi|327491333|gb|EGF23107.1| SsrA-binding protein [Atopobium vaginae DSM 15829]
Length = 172
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 91/156 (58%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+R +++ NR A ++Y + + EAGI LTG EVKSLR ++D + N+E
Sbjct: 11 KGARKQATFHLIAKNRSAYHDYDLDNAEEAGIELTGVEVKSLRERSCQLTDCFCIVRNNE 70
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L +I Y +N P R R+LL+ K++I + V+ G++LVP++IYFN +
Sbjct: 71 LYLVGLHIHPYSHGGVWNIDPDRRRRLLMHKKQILSIARRVQTKGVSLVPLEIYFNERNR 130
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ +A+ +GKK YDKR KRD DR+ R+L+
Sbjct: 131 VKVKVAVGRGKKMYDKRAAAAKRDSDREIQRVLKAR 166
>gi|237751765|ref|ZP_04582245.1| ssrA RNA-binding protein [Helicobacter bilis ATCC 43879]
gi|229373131|gb|EEO23522.1| ssrA RNA-binding protein [Helicobacter bilis ATCC 43879]
Length = 151
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA ++Y I+ EAG+VL G+EVKSLR + N+ DS+ N+E ++ ++ +
Sbjct: 4 IIRNKKAYHDYFILEQIEAGLVLAGSEVKSLRNGRANLKDSFVRIINNEAFVFGMHLTYH 63
Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
N F +R RKLLL K++I +L+ V + G+ +VP++++FN KG AK+ +ALA+G
Sbjct: 64 HTTNPYFKPDEKRPRKLLLHKKQIDKLFGQVSQKGLAIVPLQVHFNKKGYAKMLIALAKG 123
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRET K+++ DR+ ++ H
Sbjct: 124 KKEYDKRETIKRKELDREARANMKNH 149
>gi|317130202|ref|YP_004096484.1| SsrA-binding protein [Bacillus cellulosilyticus DSM 2522]
gi|315475150|gb|ADU31753.1| SsrA-binding protein [Bacillus cellulosilyticus DSM 2522]
Length = 155
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 74/146 (50%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR++YHI ++EAG+VLTGTE+KSLR + N+ DS+A N E+WL N +I
Sbjct: 6 KLIAQNKKARHDYHIEETYEAGMVLTGTEIKSLRNGRGNLKDSFARVSNGEVWLHNMHIS 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLL+ K+EI +L R G TLVP+KIY G AK L L +
Sbjct: 66 PYEQGNRYNHDPVRTRKLLMHKKEIDKLIGLTREKGYTLVPLKIYIK-NGFAKTLLGLGK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK YDKRE KK+D R+ R ++
Sbjct: 125 GKKKYDKREDLKKKDAKREIQRAFKD 150
>gi|71281025|ref|YP_270492.1| SsrA-binding protein [Colwellia psychrerythraea 34H]
gi|123631389|sp|Q47XH8|SSRP_COLP3 RecName: Full=SsrA-binding protein
gi|71146765|gb|AAZ27238.1| SsrA-binding protein [Colwellia psychrerythraea 34H]
Length = 162
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++ N+KAR+NY + FE G+ L G E+KS+R KVNISD Y ++
Sbjct: 1 MAKKKSKSSNSNTIALNKKARHNYSLTDKFEGGMSLQGWEIKSIRSGKVNISDCYVHIKD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I ++ P R+RKLLL++RE+ ++ AAV RDG +L+ +Y+ A
Sbjct: 61 REAYLLGAEISPLNAASSHVVCDPNRDRKLLLNRRELDKIIAAVERDGYSLIATAMYWKA 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K++ L +GKK++DKR K R+W K R+++ N
Sbjct: 121 -CWVKLEFYLGKGKKDHDKRSDIKDREWAVDKGRLMKNKN 159
>gi|294053707|ref|YP_003547365.1| SsrA-binding protein [Coraliomargarita akajimensis DSM 45221]
gi|293613040|gb|ADE53195.1| SsrA-binding protein [Coraliomargarita akajimensis DSM 45221]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + + + N KA +NY + FEAG+ L GTEVK++R I +S+ E
Sbjct: 1 MCAKKKSSDDRYREIRNAKATHNYFVGEKFEAGMQLLGTEVKAIRDGNAQIGESFCRIEK 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
++WL NS+I EY N NH PRR RKLLL +REI++L A+ G TLVP++IY
Sbjct: 61 GQVWLYNSHIGEYKFGNFQNHQPRRKRKLLLHRREINKLIGAIEAGGKTLVPLRIYMK-H 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
GL KI++AL QGKK +DKRET K++ R+ R +R
Sbjct: 120 GLIKIEIALCQGKKLHDKRETLKRKVAMREAERDMRSR 157
>gi|218130425|ref|ZP_03459229.1| hypothetical protein BACEGG_02014 [Bacteroides eggerthii DSM 20697]
gi|317473906|ref|ZP_07933186.1| SsrA-binding protein [Bacteroides eggerthii 1_2_48FAA]
gi|217987426|gb|EEC53756.1| hypothetical protein BACEGG_02014 [Bacteroides eggerthii DSM 20697]
gi|316909983|gb|EFV31657.1| SsrA-binding protein [Bacteroides eggerthii 1_2_48FAA]
Length = 150
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 99/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T++P++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELDKLQRGSKDPGFTMIPVRLFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K++D R R+ +
Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150
>gi|15834967|ref|NP_296726.1| SsrA-binding protein [Chlamydia muridarum Nigg]
gi|270285141|ref|ZP_06194535.1| SsrA-binding protein [Chlamydia muridarum Nigg]
gi|270289163|ref|ZP_06195465.1| SsrA-binding protein [Chlamydia muridarum Weiss]
gi|301336536|ref|ZP_07224738.1| SsrA-binding protein [Chlamydia muridarum MopnTet14]
gi|13878777|sp|Q9PKW3|SSRP_CHLMU RecName: Full=SsrA-binding protein
gi|7190389|gb|AAF39209.1| small protein B [Chlamydia muridarum Nigg]
Length = 151
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K + NRKA +NY ++ +F+AGIVLTGTE+KSLR N+ D+Y T E WL S I
Sbjct: 4 KEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSSIA 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N NH RR RKLLL K E+ +L + V + G+T++P+ +F+ KG K+ + +
Sbjct: 64 PYRFGNINNHEERRKRKLLLHKYELQKLDSRVSQKGLTIIPLSFFFS-KGFVKVRIGCCR 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK++DKR+ +R+ +R+ ++
Sbjct: 123 GKKSHDKRQALIEREKNRELAAAMKR 148
>gi|296126626|ref|YP_003633878.1| SsrA-binding protein [Brachyspira murdochii DSM 12563]
gi|296018442|gb|ADG71679.1| SsrA-binding protein [Brachyspira murdochii DSM 12563]
Length = 159
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 75/160 (46%), Positives = 109/160 (68%), Gaps = 4/160 (2%)
Query: 1 MSLKSRGNPP---KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M+ K + ++ N+KA +NY ++ +FEAGIVL GTEVKSLR VN++DSYA+
Sbjct: 1 MAKKDKKGNNTISSGEITKNKKALFNYELIETFEAGIVLLGTEVKSLRERSVNMADSYAS 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
F+ E+++ N +I Y NR NH P R RKLL+ KRE+ RLY ++ G+TL+P K+YF
Sbjct: 61 FKKGELFIVNMHISPYHFGNRNNHEPLRERKLLMKKRELKRLYGKIKEQGLTLIPAKLYF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+G K++LALA+GKK +DKRET K++ DR+ R ++
Sbjct: 121 -ARGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIKR 159
>gi|315037690|ref|YP_004031258.1| SsrA-binding protein [Lactobacillus amylovorus GRL 1112]
gi|312275823|gb|ADQ58463.1| SsrA-binding protein [Lactobacillus amylovorus GRL 1112]
gi|327182977|gb|AEA31424.1| SsrA-binding protein [Lactobacillus amylovorus GRL 1118]
Length = 152
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + +++ N+KAR++Y I ++EAGI LTGTE+KS+R ++N+ D Y N +L
Sbjct: 2 KKEKDENLIAQNKKARHDYFIKETYEAGIALTGTEIKSVRARRINLRDGYVQIINGSAFL 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY Q NR+NH P R+R+LLL K+EI+RL G+ ++P+K+Y G AK+
Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEINRLAKVQAERGIAIIPLKVYLK-HGFAKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153
+ + QGKK YDKR+T K+RD R+ HR
Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIHR 148
>gi|329954356|ref|ZP_08295448.1| SsrA-binding protein [Bacteroides clarus YIT 12056]
gi|328527624|gb|EGF54617.1| SsrA-binding protein [Bacteroides clarus YIT 12056]
Length = 150
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 99/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T++P++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELDKLQRGSKDPGFTMIPVRMFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE K++D R R+ +
Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150
>gi|288818903|ref|YP_003433251.1| SsrA-binding protein [Hydrogenobacter thermophilus TK-6]
gi|288788303|dbj|BAI70050.1| SsrA-binding protein [Hydrogenobacter thermophilus TK-6]
gi|308752490|gb|ADO45973.1| SsrA-binding protein [Hydrogenobacter thermophilus TK-6]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 97/158 (61%), Gaps = 6/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSK-VNISDSYATFE 59
M+ + K +++ N++AR Y ++ ++EAGIVL G+EVK+LR + V+ DS+ E
Sbjct: 1 MAKQ----DGKHIIAINKEARAEYELLETYEAGIVLEGSEVKALRSKQTVSFKDSFVRIE 56
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E WL N YI Y A P R RKLLL KREI RL V+ G T++P+ +YF
Sbjct: 57 NGEAWLYNLYISPYRYATIKPPDPTRKRKLLLHKREILRLMGKVQERGYTIIPLSLYFK- 115
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+++ALA+GKK +D+RE ++RD RQ R ++E
Sbjct: 116 NNRVKVEIALARGKKLHDRREELRERDMRRQLEREIKE 153
>gi|317502891|ref|ZP_07960989.1| SsrA-binding protein [Prevotella salivae DSM 15606]
gi|315665997|gb|EFV05566.1| SsrA-binding protein [Prevotella salivae DSM 15606]
Length = 159
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+ +K V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DS+
Sbjct: 1 MNKEEQEIRKKSPVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRNGKASLVDSFCVIY 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E+W+ I Y + NH +R+RKLLL+KRE+H+L ++ G T+VP ++ +
Sbjct: 61 KGELWVKGMNISPYFYGSYSNHEAKRDRKLLLTKRELHKLEEDSKQIGFTIVPTLLFIDK 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+D+ALA+GKK +DKR+T +++ R+ R L+
Sbjct: 121 HGRAKVDIALAKGKKEFDKRQTLREKQDKREMDRALKHF 159
>gi|293400427|ref|ZP_06644573.1| SsrA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306827|gb|EFE48070.1| SsrA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 152
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+KV+ NRKA + Y + FEAG+VL GTE+K++R I D+Y +F N+E ++ +
Sbjct: 4 GRKVIVFNRKASHEYFLEDRFEAGLVLQGTEIKAIRKGHAQIKDAYISFTNNEAFIKEMH 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
IPEY NRFNH R RKLLL K EI +L V+ G T++P+ +Y KG AK+++AL
Sbjct: 64 IPEYEFGNRFNHDETRIRKLLLHKSEIIKLQQKVKLKGYTVIPISLYL-EKGKAKMEIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GK +DKR +K++D R+ + L+
Sbjct: 123 AKGKDLHDKRNVQKEKDAKREIEKALKN 150
>gi|325280055|ref|YP_004252597.1| SsrA-binding protein [Odoribacter splanchnicus DSM 20712]
gi|324311864|gb|ADY32417.1| SsrA-binding protein [Odoribacter splanchnicus DSM 20712]
Length = 149
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 96/148 (64%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P +V N++A ++Y + + AGIVLTGTE+KS+R K ++ DSY F E+W+ +
Sbjct: 2 PNEVNIRNKRASFDYEFLEEYNAGIVLTGTEIKSIRAGKASLVDSYCFFNRGELWVKGMH 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY +NH +R RKLLL+ +E+ +L V+ G+T+VP+K++ N KG AK+ +AL
Sbjct: 62 IAEYKLGTYYNHEEKRERKLLLTHKELIKLQRKVKESGLTIVPVKVFLNEKGYAKLRIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GKK +DKRE+ K +D + R ++
Sbjct: 122 AKGKKEFDKRESLKLKDAKKDMERAMKR 149
>gi|319902800|ref|YP_004162528.1| SsrA-binding protein [Bacteroides helcogenes P 36-108]
gi|319417831|gb|ADV44942.1| SsrA-binding protein [Bacteroides helcogenes P 36-108]
Length = 150
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 101/145 (69%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHNARRERKLLLNKKELDKLARETKSPGFTIVPVRMFINEKGLAKVVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKR++ K+++ R R+ ++
Sbjct: 126 KKEYDKRQSLKEKEDKRDMARMFKK 150
>gi|78776642|ref|YP_392957.1| SsrA-binding protein [Sulfurimonas denitrificans DSM 1251]
gi|123550751|sp|Q30TF9|SSRP_SULDN RecName: Full=SsrA-binding protein
gi|78497182|gb|ABB43722.1| SsrA-binding protein [Sulfurimonas denitrificans DSM 1251]
Length = 150
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y + FEAG+VL G+E+K++R +VN+ DS+ F E +L N++I
Sbjct: 5 IAKNKKAYFDYFLEEKFEAGLVLKGSEIKAIRAGRVNLKDSFIRFVQGEAFLFNAHIGRL 64
Query: 74 LQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ F + R +RKLLL K++I ++ AV +DG T+VP+++YFN + + KI +A+A+G
Sbjct: 65 ETTHHFYAHEERGSRKLLLHKKQIQKMIKAVEKDGYTVVPLQLYFNDRNIVKIQIAIAKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K+ +DKR K++D R R ++++
Sbjct: 125 KQLHDKRNDLKEKDMKRDMERSMKDY 150
>gi|255692247|ref|ZP_05415922.1| SsrA-binding protein [Bacteroides finegoldii DSM 17565]
gi|260622112|gb|EEX44983.1| SsrA-binding protein [Bacteroides finegoldii DSM 17565]
Length = 150
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 62/145 (42%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFAKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR RKLLL+K+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150
>gi|312131220|ref|YP_003998560.1| ssra-binding protein [Leadbetterella byssophila DSM 17132]
gi|311907766|gb|ADQ18207.1| SsrA-binding protein [Leadbetterella byssophila DSM 17132]
Length = 148
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 98/146 (67%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K V N+KA + Y + + AG+VLTGTE+KS+R +KV+++D+Y F E+++ N
Sbjct: 2 KLQKTVNIKNKKASFEYFFLDEYTAGMVLTGTEIKSIREAKVSMADAYCIFHRGELFVKN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I +Y +NH P R RKLLLS++E+ +L + G+T++P +++ N +GLAK+D+
Sbjct: 62 LNISKYDNGTYYNHDPLRERKLLLSRKELRKLEGKLTDKGLTIIPTRLFINDRGLAKLDI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHR 153
ALA+GKK YDKRE+ K++D R + R
Sbjct: 122 ALAKGKKLYDKRESIKEKDIKRDQER 147
>gi|326793870|ref|YP_004311690.1| SsrA-binding protein [Marinomonas mediterranea MMB-1]
gi|326544634|gb|ADZ89854.1| SsrA-binding protein [Marinomonas mediterranea MMB-1]
Length = 160
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 2/146 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS-YIP 71
++ N++AR++Y + + FEAG+ L+G EVKSLR K + DSY +E WL + P
Sbjct: 14 TIALNKRARHDYFVDQKFEAGLALSGWEVKSLREGKAQLVDSYVIIHQNEAWLIGARITP 73
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLL++REI R+ + G T M +Y+ K ++AL
Sbjct: 74 LLSASTHVVCEPLRQRKLLLNRREIDRIIQITEQKGKTCAAMALYWKGN-KIKCEVALVT 132
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK++DKR+T K+RDW R K R+++
Sbjct: 133 GKKDHDKRDTAKERDWARDKERLMKH 158
>gi|15604295|ref|NP_220811.1| SsrA-binding protein [Rickettsia prowazekii str. Madrid E]
gi|3334329|sp|O05968|SSRP_RICPR RecName: Full=SsrA-binding protein
gi|2073503|emb|CAA72448.1| Small protein [Rickettsia prowazekii]
gi|3860987|emb|CAA14887.1| SMALL PROTEIN B HOMOLOG (smpB) [Rickettsia prowazekii]
gi|292572044|gb|ADE29959.1| tmRNA-binding protein [Rickettsia prowazekii Rp22]
Length = 152
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 100/148 (67%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV+ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A+ E++L N +I
Sbjct: 5 KKVIVQNKKALFNYFIEEILEAGIVLKGSEVQSLRQGKASIEESHASDNGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 TEYEKANRFNHSTRRPRKLLLHAKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR K++DW + + R++R+
Sbjct: 125 KGKKLYDKRAAIKEKDWKKDQSRLIRQK 152
>gi|307564679|ref|ZP_07627209.1| SsrA-binding protein [Prevotella amnii CRIS 21A-A]
gi|307346607|gb|EFN91914.1| SsrA-binding protein [Prevotella amnii CRIS 21A-A]
Length = 159
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 89/155 (57%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ D++ E+
Sbjct: 5 KQSKKRKVSVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDAFCVINKGEM 64
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
W+ I Y + NH +R RKLLL+K+EI L + + G T++P ++ + G A
Sbjct: 65 WVQGMNISPYFYGSYANHEAKRPRKLLLNKKEIRALESDSQAPGYTIIPTLVFIDDNGRA 124
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KI +ALA+GKK YDKR+ K ++ R+ R+ + +
Sbjct: 125 KIKIALAKGKKEYDKRQVLKAKEDKREMDRVRKRY 159
>gi|291614096|ref|YP_003524253.1| SsrA-binding protein [Sideroxydans lithotrophicus ES-1]
gi|291584208|gb|ADE11866.1| SsrA-binding protein [Sideroxydans lithotrophicus ES-1]
Length = 149
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA + Y I EAG++L G EVK++R +V + ++Y ++ ++L S+I
Sbjct: 3 IIQNKKAFHEYFIEEKHEAGLMLEGWEVKAIREGRVQLKEAYVLAKDGALYLFGSHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
L + + P R RKLLL K EI +L V+R G T++P+ +++ G K+++ LA+G
Sbjct: 63 LNASTHIHPDPVRTRKLLLHKHEIDKLIGKVQRAGYTIMPLDMHYKG-GRVKLEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR TE+++D R+ +++
Sbjct: 122 KKEHDKRATEREKDAKREAASAMKK 146
>gi|228470342|ref|ZP_04055246.1| SsrA-binding protein [Porphyromonas uenonis 60-3]
gi|228308085|gb|EEK16960.1| SsrA-binding protein [Porphyromonas uenonis 60-3]
Length = 156
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + + N++A Y+Y ++ + AGIVL G+E+KS+R K + DSY F +
Sbjct: 1 MAKKGKQ-SARAINIRNKRATYDYELLDQYTAGIVLVGSEIKSIRAGKAALVDSYCYFSH 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ N YI EY A+ NH RR RKLLL+++E+ +L ++ G T++P++++ N +
Sbjct: 60 GELWIKNMYIAEYSYASYNNHVERRERKLLLNRKELRKLEEEMKNPGQTIIPVRLFINER 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
GLAK+ +ALA+GKK YDKR + + R+ R+ R +R
Sbjct: 120 GLAKLVVALARGKKQYDKRASIRDREDKRRLERAMR 155
>gi|224373419|ref|YP_002607791.1| SsrA-binding protein [Nautilia profundicola AmH]
gi|254778373|sp|B9L603|SSRP_NAUPA RecName: Full=SsrA-binding protein
gi|223588371|gb|ACM92107.1| SsrA-binding protein [Nautilia profundicola AmH]
Length = 151
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ NRKA ++Y I +EAGI L G+EVK+LR +VN+ DSY ++ E+W +I
Sbjct: 2 KVVATNRKAYHDYDIYDKYEAGIELKGSEVKALRQGRVNLKDSYVRIKDGEVWWLQGHIS 61
Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
F H +R RKLLL K EI +L G TLVP++IYFN + AK+++A+A
Sbjct: 62 NLETTYSAFKHDEKRPRKLLLHKNEIAKLAGYTSEKGYTLVPLRIYFNNRNRAKLEIAVA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR K+++ ++ ++ +
Sbjct: 122 KGRKLHDKRRVMKEKELKKEAASAMKRY 149
>gi|313900674|ref|ZP_07834167.1| SsrA-binding protein [Clostridium sp. HGF2]
gi|312954736|gb|EFR36411.1| SsrA-binding protein [Clostridium sp. HGF2]
Length = 151
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+K+V NRKA + Y + FEAG+VL GTE+KS+R V I D+Y +F NDE ++ +
Sbjct: 3 GRKIVVFNRKASHEYFLEERFEAGLVLQGTEIKSIRQGHVQIRDAYISFTNDEAYVKEMH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NRFNH R RKLLL K EI +L V+ G T++P+ +Y KG+AK+++AL
Sbjct: 63 ILGYEFGNRFNHDETRIRKLLLHKEEIRKLQQKVKLKGYTVIPISVYL-EKGMAKMEIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GK +DKR +K++D R+ + ++
Sbjct: 122 AKGKDLHDKRNVQKEKDAKREIEKAMKN 149
>gi|309777284|ref|ZP_07672246.1| SsrA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308914964|gb|EFP60742.1| SsrA-binding protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 151
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KK++ NRKA + Y + FEAG+VL GTE+KS+R V I D+Y +F NDE ++ +
Sbjct: 3 GKKIIVFNRKASHEYFLEERFEAGLVLQGTEIKSIRQGHVQIRDAYISFTNDEAYVKEMH 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y NRFNH R RKLLL K EI +L V+ G T++P+ +Y KG+AK+++AL
Sbjct: 63 ILGYAFGNRFNHDETRIRKLLLHKEEIRKLQQKVKLKGYTVIPISVYL-EKGMAKMEIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GK +DKR +K++D R+ + L+
Sbjct: 122 AKGKDLHDKRNAQKEKDAKREIEKALKN 149
>gi|30173369|sp|Q9AKQ2|SSRP_RICMO RecName: Full=SsrA-binding protein
gi|13235373|emb|CAC33595.1| Small protein [Rickettsia montanensis]
Length = 152
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 70/148 (47%), Positives = 101/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I
Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A
Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK DKRE+ K+++W R + R++R+
Sbjct: 125 KGKKLRDKRESIKEKNWKRDQSRLIRQK 152
>gi|320450437|ref|YP_004202533.1| SsrA-binding protein [Thermus scotoductus SA-01]
gi|320150606|gb|ADW21984.1| SsrA-binding protein [Thermus scotoductus SA-01]
Length = 144
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 72/139 (51%), Positives = 98/139 (70%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V +NR+AR++Y I+ ++EAGIVL GTEVKSLR KV+ + S+A FEN E++L N YI Y
Sbjct: 4 VLENRRARHDYEILETYEAGIVLKGTEVKSLRAGKVDFTGSFAKFENGELYLENLYIAPY 63
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ + N PRR RKLLL + E++RL V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 64 EKGSYTNVDPRRKRKLLLHRHELNRLRGRVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
Query: 134 KNYDKRETEKKRDWDRQKH 152
K Y ++E +KKR R
Sbjct: 124 KAYQRKEDDKKRAVRRALE 142
>gi|253581794|ref|ZP_04859018.1| SsrA-binding protein [Fusobacterium varium ATCC 27725]
gi|251836143|gb|EES64680.1| SsrA-binding protein [Fusobacterium varium ATCC 27725]
Length = 146
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KA ++Y I FEAGI L G+EVKS + K++I +S+ N EI++ I
Sbjct: 2 ILAGNKKAFFDYFIEDKFEAGIELVGSEVKSAKAGKISIKESFIRIINGEIFIMGMSIVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL K+EI +L+ V + G T+VP+ ++ + KG K+++ALA+G
Sbjct: 62 WGFGSVYNPDERRVRKLLLHKKEIKKLHEKVSQKGYTIVPLNVHLS-KGYVKLEIALARG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KKNYDKRE+ K+D +R R+ +E
Sbjct: 121 KKNYDKRESLAKKDVERDLQRMAKER 146
>gi|224437885|ref|ZP_03658832.1| SsrA-binding protein [Helicobacter cinaedi CCUG 18818]
gi|313144334|ref|ZP_07806527.1| SsrA-binding protein [Helicobacter cinaedi CCUG 18818]
gi|313129365|gb|EFR46982.1| SsrA-binding protein [Helicobacter cinaedi CCUG 18818]
Length = 155
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K+++ N+KA ++Y I+++ E+GI L G+EVKS+R +VN+ DS+ E++L N++I
Sbjct: 3 EKIIAKNKKAFFDYEILQTLESGIALLGSEVKSIRAGRVNLKDSFVRIVRGEVFLFNAHI 62
Query: 71 PEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
F RR RKLLL + EI +L+ +V ++G+++VP+ +Y N + K+ +AL
Sbjct: 63 SFLETTFTHFKPNERRERKLLLHRSEIDKLFGSVSKEGLSIVPLSMYLNKRNRIKLSIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKRE+ KK+ +R+ ++++
Sbjct: 123 VRGKKLYDKRESIKKKTLEREARANMKDY 151
>gi|94986669|ref|YP_594602.1| SsrA-binding protein [Lawsonia intracellularis PHE/MN1-00]
gi|187611484|sp|Q1MRU5|SSRP_LAWIP RecName: Full=SsrA-binding protein
gi|94730918|emb|CAJ54281.1| tmRNA-binding protein [Lawsonia intracellularis PHE/MN1-00]
Length = 155
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K +V +NRKAR+ Y ++ EAGIVLTG EVKSLR + DSY F+
Sbjct: 1 MSAKK----NSHLVFENRKARHLYDLLDFLEAGIVLTGPEVKSLRSGHASFQDSYVDFKQ 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E ++ +IP Y A P R RKLLL ++E+ L + V + G+T+VP+K+YF +
Sbjct: 57 GEGYIVGLHIPPYNNAGYVIQNPDRPRKLLLHRQELKMLASKVEQKGLTIVPLKLYFKNR 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K ++ALA+G+K YD R KKR R L
Sbjct: 117 -KVKTEIALAKGRKLYDHRNELKKRAEAMDIKRELAAR 153
>gi|162447271|ref|YP_001620403.1| SsrA-binding protein [Acholeplasma laidlawii PG-8A]
gi|187611490|sp|A9NF97|SSRP_ACHLI RecName: Full=SsrA-binding protein
gi|161985378|gb|ABX81027.1| SsrA-binding protein [Acholeplasma laidlawii PG-8A]
Length = 149
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 101/145 (69%), Gaps = 1/145 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA + Y I + F AGI L G+EVKS+R K +I+++Y TF N E+++ N +I
Sbjct: 2 KIITQNKKAHFEYFIEQKFVAGIKLQGSEVKSIRAGKCSINEAYITFRNGEVFILNMHIA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
++ ++ FNH R RKLLL++ EI +L A RDGMT++P+ + + GL K+ +ALA+
Sbjct: 62 KFDASSIFNHEETRTRKLLLNRSEIDKLMGAQTRDGMTIIPLTVELHE-GLIKVVIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKRET K+RD R++ + L+
Sbjct: 121 GKKLFDKRETIKERDIKREQQQSLK 145
>gi|161507017|ref|YP_001576971.1| SsrA-binding protein [Lactobacillus helveticus DPC 4571]
gi|260103355|ref|ZP_05753575.1| SsrA-binding protein [Lactobacillus helveticus DSM 20075]
gi|187611482|sp|A8YTT9|SSRP_LACH4 RecName: Full=SsrA-binding protein
gi|160348006|gb|ABX26680.1| SsrA-binding protein [Lactobacillus helveticus DPC 4571]
gi|260082860|gb|EEW66980.1| SsrA-binding protein [Lactobacillus helveticus DSM 20075]
gi|323465969|gb|ADX69656.1| SsrA-binding protein [Lactobacillus helveticus H10]
gi|328462427|gb|EGF34462.1| SsrA-binding protein [Lactobacillus helveticus MTCC 5463]
Length = 152
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y +L
Sbjct: 2 KKEKDDNLIAQNKKARHDYFIKETVEAGIALTGTEIKSVRARRINLRDGYVQIYGGSAYL 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY Q NR+NH P R+R+LLL K+EI RL A G+ ++P+K+Y G AK+
Sbjct: 62 ENVHISEYKQGNRYNHDPLRSRRLLLHKKEIARLAKAQSERGIAIIPLKVYLK-HGFAKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153
+ + QGKK YDKR+T K+RD R+ R
Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIRR 148
>gi|146301185|ref|YP_001195776.1| SsrA-binding protein [Flavobacterium johnsoniae UW101]
gi|189046827|sp|A5FEB8|SSRP_FLAJO RecName: Full=SsrA-binding protein
gi|146155603|gb|ABQ06457.1| SsrA-binding protein [Flavobacterium johnsoniae UW101]
Length = 151
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 70/149 (46%), Positives = 106/149 (71%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K V N++AR++Y I+ ++ AGIVL GTE+KS+R+ K NI++S+ F E++ N+YI
Sbjct: 3 KSVNILNKRARFDYEIIDTYTAGIVLAGTEIKSIRLGKANITESFCEFSGIELFAINTYI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY N+FNH R RKLLL+K+E+ L+ +V+ G+T+VP+K++ N KGLAK+ + L
Sbjct: 63 EEYSFGNQFNHKSRSERKLLLNKKELKSLHKSVQAKGLTIVPLKLFTNEKGLAKLQIGLC 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKKNYDKRE+ K++D R RI + +N
Sbjct: 123 KGKKNYDKRESLKEQDTKRDLDRIKKAYN 151
>gi|227537411|ref|ZP_03967460.1| tmRNA-binding protein [Sphingobacterium spiritivorum ATCC 33300]
gi|227242685|gb|EEI92700.1| tmRNA-binding protein [Sphingobacterium spiritivorum ATCC 33300]
Length = 151
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 98/146 (67%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+ N++A + YH++ + AG+ L GTE+KS+R K NI+DS+ F +++ N +I
Sbjct: 6 NINIKNKRASFEYHLLDKYVAGLQLLGTEIKSIREGKANINDSFCAFFEKGLYIRNMHIA 65
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY + +NH +R+R+LLL+K+E+ +L A G T+VP++I+ N +G AK+++ALAQ
Sbjct: 66 EYSHGSFYNHEAKRDRQLLLTKKELKKLRAKGDEKGFTIVPLRIFVNERGFAKVEIALAQ 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157
GKK++DKR+T K RD R+ R ++
Sbjct: 126 GKKDFDKRDTIKDRDAKRELDRAMKR 151
>gi|291458622|ref|ZP_06598012.1| SsrA-binding protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291419155|gb|EFE92874.1| SsrA-binding protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 156
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K++++N+KA +++ + +E GI L GTEVKSLR+ +I +S+ +E+++ +
Sbjct: 5 GCKLIANNKKAWHDFFVDEEYECGIELFGTEVKSLRLGHCSIKESFCQIRGEEVYIKGMH 64
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y + N FN R+R+LLL + EI +L +R G TLVP+++YF + L K+++ L
Sbjct: 65 IHPYEKGNLFNRDALRDRRLLLHRSEIRKLSEKIREKGYTLVPLRVYFK-RSLVKVEIGL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKKNYDKRE KKR R+ + + N
Sbjct: 124 CRGKKNYDKREDMKKRSQRRELEKEFKRAN 153
>gi|281358319|ref|ZP_06244801.1| SsrA-binding protein [Victivallis vadensis ATCC BAA-548]
gi|281315146|gb|EFA99177.1| SsrA-binding protein [Victivallis vadensis ATCC BAA-548]
Length = 153
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
R P V++ N+KA +NYHI+ FEAG+ L GTEVKS R + +++ Y T N + W
Sbjct: 2 PRQTPADPVLATNKKAFHNYHIIERFEAGVELVGTEVKSCRDRAIVMNEGYVTINNGQAW 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N +I Y NRFNH + R+LLL EI +L + + G T+VP+K Y KGL K
Sbjct: 62 LLNVHIAVYGFGNRFNHVATQKRRLLLHHNEILKLAQWLGQKGGTIVPLKFYLK-KGLVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+++A QGK + D+RET ++R D + R ++
Sbjct: 121 VEIAYCQGKTHGDQRETLRRRQSDLEMRRAVKR 153
>gi|241889381|ref|ZP_04776682.1| SsrA-binding protein [Gemella haemolysans ATCC 10379]
gi|241863924|gb|EER68305.1| SsrA-binding protein [Gemella haemolysans ATCC 10379]
Length = 154
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/151 (41%), Positives = 102/151 (67%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ KV++ N+KA ++Y I +FEAG+VLTGTE+KS+R ++N+ DSY E+++ N
Sbjct: 2 DKEIKVIAQNKKANHDYFIEETFEAGLVLTGTEIKSIRRGRINLKDSYCQTRRGEMFVYN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + + NRFNH P R RKLLL K++I L GM++VP+K+Y G AK+ +
Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIASLTNVQNEIGMSIVPLKLYIK-NGYAKLLI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKKNYDKR K+++ +++ +R+L++
Sbjct: 121 GVAKGKKNYDKRHVLKQKEANKEINRVLKDK 151
>gi|166154297|ref|YP_001654415.1| SsrA-binding protein [Chlamydia trachomatis 434/Bu]
gi|166155172|ref|YP_001653427.1| SsrA-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
gi|301335549|ref|ZP_07223793.1| SsrA-binding protein [Chlamydia trachomatis L2tet1]
gi|165930285|emb|CAP03771.1| SsrA-binding protein [Chlamydia trachomatis 434/Bu]
gi|165931160|emb|CAP06725.1| SsrA-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis]
Length = 151
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K + NRKA ++Y ++ + +AGIVLTGTE+KSLR N+ D+Y T E WL S
Sbjct: 2 GVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSS 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N NH RR RKLLL K EIH+L A + + G+T+VP+ +F+ KG K+ +
Sbjct: 62 IAPYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTVVPLSFFFS-KGFVKVRIGC 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
+GKK +DKR++ +R+ +R+ ++
Sbjct: 121 CRGKKAHDKRQSIIEREKNRELAAAMKR 148
>gi|319955718|ref|YP_004166985.1| ssra-binding protein [Cellulophaga algicola DSM 14237]
gi|319424378|gb|ADV51487.1| SsrA-binding protein [Cellulophaga algicola DSM 14237]
Length = 154
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/150 (44%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69
KK+ N++AR+++ I+ ++ AG+VL GTE+KS+R+SK +IS+S+ F E E+++ N
Sbjct: 4 KKINIKNKRARFDFEILDTYTAGLVLGGTEIKSIRLSKASISESFCEFNERGELFIINMQ 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY FNH P+ RKLLL++ E+ +L V+ G+T++P+ ++ N +GLAKI++ L
Sbjct: 64 IDEYSHGTHFNHAPKAQRKLLLNRGELRKLEKEVKNTGLTIIPLNLFLNDRGLAKINIGL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRET K RD + RI + N
Sbjct: 124 AKGKKLYDKRETMKDRDNKKDLDRIKKSFN 153
>gi|251771688|gb|EES52263.1| SsrA-binding protein [Leptospirillum ferrodiazotrophum]
Length = 170
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 4/162 (2%)
Query: 1 MSLKSRG----NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56
M+ K + + + VS NRKA + Y ++ FEAGIVL GTEVK++R VN+ D++
Sbjct: 1 MAGKKKDEREADEKARAVSTNRKALFRYEVIERFEAGIVLWGTEVKAIREGSVNLGDAFV 60
Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
FE +E WL ++ Y NR NH P R RKLLL ++EI RL+ + G+T+VP+ IY
Sbjct: 61 RFEKEESWLYQMHVGPYRGGNRENHDPLRVRKLLLHRKEILRLFGLTLQKGLTVVPLGIY 120
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
N + K+ LAL +GK DKRE K+R+ DR+ R+ R +
Sbjct: 121 SNNRKKFKVTLALVKGKTQGDKREAIKRREADREISRVFRSN 162
>gi|326797752|ref|YP_004315571.1| SsrA-binding protein [Sphingobacterium sp. 21]
gi|326548516|gb|ADZ76901.1| SsrA-binding protein [Sphingobacterium sp. 21]
Length = 149
Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats.
Identities = 66/144 (45%), Positives = 99/144 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N+KA Y YHI+ + AGI L GTE+KS+R SK NI D++ F ND +++ N +I E
Sbjct: 5 INIRNKKAYYEYHILEKYIAGIQLLGTEIKSIRQSKANIGDAFCAFLNDGLYIRNMHIAE 64
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +NH +R+RKLLL+K+E+ +L G T++P+KI+ N +G AK+++ALAQG
Sbjct: 65 YSHGSFYNHESKRDRKLLLTKKELAKLKVKGEEKGFTIIPLKIFVNERGYAKVEIALAQG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK+YDKRE+ K+RD R+ R +
Sbjct: 125 KKDYDKRESIKERDTKRELSRTYK 148
>gi|157363529|ref|YP_001470296.1| SsrA-binding protein [Thermotoga lettingae TMO]
gi|187629776|sp|A8F4Z8|SSRP_THELT RecName: Full=SsrA-binding protein
gi|157314133|gb|ABV33232.1| SsrA-binding protein [Thermotoga lettingae TMO]
Length = 148
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/144 (49%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+V+ N+K R +Y I+ ++EAGI L GTEVKSLR V+ D++ ++EI++ N +I
Sbjct: 3 IVATNKKIR-DYEILETYEAGIELKGTEVKSLRERNVSFKDAFCRVRDNEIYMLNLHISP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y ANRFNH P R RKLLL KREI RL + G+TL+P KIYFN GLAK+++AL +G
Sbjct: 62 YKFANRFNHDPERPRKLLLHKREIKRLIGKLTTTGLTLIPTKIYFNDHGLAKVEIALVRG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK YDKRE K+++ +R+ L+
Sbjct: 122 KKRYDKREEIKRKEINRKIKTYLK 145
>gi|270265321|ref|ZP_06193582.1| SsrA-binding protein [Serratia odorifera 4Rx13]
gi|270040725|gb|EFA13828.1| SsrA-binding protein [Serratia odorifera 4Rx13]
Length = 160
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF +
Sbjct: 1 MTKKKAHKPGSATIAQNKRARFEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ P R RKLLL KRE+ L V RDG T+V + +Y+
Sbjct: 61 GEAYLFGATVSPLNVASSHVVCDPTRTRKLLLKKRELDSLLGRVNRDGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
AKI + +A+GKK +DKR+ K R+W K RI++ N
Sbjct: 120 NAWAKIKIGVAKGKKEHDKRDDIKDREWQTAKSRIMKHAN 159
>gi|149277980|ref|ZP_01884119.1| SsrA-binding protein [Pedobacter sp. BAL39]
gi|149231178|gb|EDM36558.1| SsrA-binding protein [Pedobacter sp. BAL39]
Length = 149
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/144 (40%), Positives = 96/144 (66%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N++A ++YHIV F AG+ L GTE+K++R K N+SD++ F + +++ N +I E
Sbjct: 5 IQIKNKRAYFDYHIVEEFNAGLALLGTEIKAIRQGKANMSDAFCMFIGNVLYVRNLHISE 64
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y ++ +H +R+R LLL K+E+ +L A G T+VP++IY N +G AKI +ALAQG
Sbjct: 65 YSHSSFHHHDIKRDRILLLHKKELRKLKAKSEEKGYTIVPLRIYTNERGFAKIQIALAQG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKR++ K R+ R+ R ++
Sbjct: 125 KKEFDKRDSIKDRESKREMDRAMK 148
>gi|34557274|ref|NP_907089.1| SsrA-binding protein [Wolinella succinogenes DSM 1740]
gi|39932250|sp|Q7M9J0|SSRP_WOLSU RecName: Full=SsrA-binding protein
gi|34482990|emb|CAE09989.1| SMALL PROTEIN B HOMOLOG [Wolinella succinogenes]
Length = 151
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+KV+++N+KA +++HI+ EAGI L+G+EVK++R +VN+ DS+ E +L N++I
Sbjct: 3 RKVIANNKKALFDFHILERLEAGIALSGSEVKAIRAGRVNLKDSFVKIIKGEAFLLNAHI 62
Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
N + RR RKLLL +++I +L +V +GMTLV + IYFN + AK ++AL
Sbjct: 63 SYLETTNPHYKPDERRPRKLLLHRKQIDKLTGSVSTEGMTLVTLSIYFNERNRAKAEIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GK +DKRET KKR DR+ L+EH
Sbjct: 123 AKGKNLHDKRETLKKRILDREVKAALKEH 151
>gi|329767608|ref|ZP_08259129.1| SsrA-binding protein [Gemella haemolysans M341]
gi|328839235|gb|EGF88819.1| SsrA-binding protein [Gemella haemolysans M341]
Length = 154
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 63/151 (41%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
N KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R ++N+ DSY E+++ N
Sbjct: 2 NKEIKVIAQNKKANHDYFIEETYEAGLVLTGTEIKSIRRGRINLKDSYCQTRRGEMFVYN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + + NRFNH P R RKLLL K++I L GM++VP+K+Y G AK+ +
Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIASLTNVQNEIGMSIVPLKLYIK-NGYAKLLI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKKNYDKR K+++ +++ R+L++
Sbjct: 121 GVAKGKKNYDKRHVLKQKEANKEISRVLKDK 151
>gi|325287546|ref|YP_004263336.1| SsrA-binding protein [Cellulophaga lytica DSM 7489]
gi|324323000|gb|ADY30465.1| SsrA-binding protein [Cellulophaga lytica DSM 7489]
Length = 154
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/150 (40%), Positives = 103/150 (68%), Gaps = 1/150 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE-IWLTNSY 69
KK+ N++AR+ Y ++ ++ AG+VL+GTE+KS+R K +I++S+ F + +++ N
Sbjct: 4 KKINIKNKRARFEYELIDTYTAGLVLSGTEIKSIREGKASITESFCEFNDRNELFIINMQ 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ EY + +NH P+ +RKLLL++ E+ +L V+ G+T+VP+ ++ N KGLAKI++AL
Sbjct: 64 VDEYSHGSHYNHQPKASRKLLLNRGELKKLEKEVKNTGLTIVPLNMFLNDKGLAKINIAL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK +DKR++ K RD R RI + N
Sbjct: 124 AKGKKLHDKRDSIKDRDNKRNLDRIKKSFN 153
>gi|303258078|ref|ZP_07344086.1| SsrA-binding protein [Burkholderiales bacterium 1_1_47]
gi|330998709|ref|ZP_08322438.1| SsrA-binding protein [Parasutterella excrementihominis YIT 11859]
gi|302859097|gb|EFL82180.1| SsrA-binding protein [Burkholderiales bacterium 1_1_47]
gi|329576448|gb|EGG57960.1| SsrA-binding protein [Parasutterella excrementihominis YIT 11859]
Length = 152
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KAR++Y I FEAG+ L G EVKS+R +I +++ N E++L N+ I
Sbjct: 3 IIQNKKARFDYEIEEKFEAGLELRGWEVKSIRAGGASIKEAHVFVRNGELFLLNANITPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P RNRKLLL K EI RL V + G +L+P+ ++F G K++L L +G
Sbjct: 63 KTASTHEKADPTRNRKLLLHKHEIMRLIGRVEQAGYSLIPLDMHFKD-GRVKLELGLGKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK ++KR KR+W R++ R+L+
Sbjct: 122 KKLFEKRADIGKREWKREQGRLLKNR 147
>gi|317152490|ref|YP_004120538.1| SsrA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942741|gb|ADU61792.1| SsrA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 158
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P + N++AR Y I+ +FEAGI L G+EVKSLR V D Y F +
Sbjct: 1 MAKKKSTTTPD-TIGTNKQARRLYDILETFEAGISLLGSEVKSLRGGHVAFKDGYVQFRD 59
Query: 61 DEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+L +I Y + H P R R+LLL KREI L A + G+T++PMK+YF+
Sbjct: 60 HSAFLVGVHIAPYEKTGEYDQHDPERPRQLLLHKREILVLKAKSDQKGLTVIPMKMYFS- 118
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G K+ + L +GK + +++ K RD R R L +H
Sbjct: 119 RGKIKVLIGLGKGKNVHSRKQDLKDRDIARDTARQLADH 157
>gi|313886830|ref|ZP_07820535.1| SsrA-binding protein [Porphyromonas asaccharolytica PR426713P-I]
gi|312923720|gb|EFR34524.1| SsrA-binding protein [Porphyromonas asaccharolytica PR426713P-I]
gi|332176532|gb|AEE12222.1| SsrA-binding protein [Porphyromonas asaccharolytica DSM 20707]
Length = 156
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + + N++A Y+Y ++ + AGIVL G+E+KS+R K + DSY F
Sbjct: 1 MAKKGKQ-SARAINIRNKRATYDYELLDQYTAGIVLVGSEIKSIRAGKAALVDSYCYFSR 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+W+ N YI EY A+ NH RR RKLLL+++E+ +L ++ G T++P++++ N +
Sbjct: 60 GELWIKNMYIAEYSYASYNNHVERRERKLLLNRKELRKLEEEMKNPGQTIIPVRLFINER 119
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
GLAK+ +ALA+GKK YDKR + R+ R+ R +R
Sbjct: 120 GLAKLVVALARGKKQYDKRAAIRDREDKRRLERAMR 155
>gi|291544215|emb|CBL17324.1| SsrA-binding protein [Ruminococcus sp. 18P13]
Length = 154
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K ++ NR+AR+ Y + SFE GIVL GTEVKS+R VN+ DS+ + + E+W+
Sbjct: 2 QQTGLKTIAVNRQARHEYFVQESFETGIVLVGTEVKSIRQGGVNLKDSWCSIDKGELWIK 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y + N FN P R RKLL+ +EI RL ++++G+TL+P+ +YF K+
Sbjct: 62 GMHISPYEKGNIFNTDPLRVRKLLMHHKEIDRLLGTLKQEGLTLIPLSLYFKGS-RVKVQ 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L L +GKK +DKR+ RD R+ R L+ N
Sbjct: 121 LGLCKGKKLHDKRDAAAARDAKREIDRALKTRN 153
>gi|323454029|gb|EGB09900.1| hypothetical protein AURANDRAFT_16386 [Aureococcus anophagefferens]
Length = 144
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 68/144 (47%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V+ NRKAR++YH+VR+ EAGI LTGTEVKS R + VN+ D +A E +WL N I +
Sbjct: 1 VASNRKARFDYHVVRTMEAGIALTGTEVKSCRNNNVNLRDGFARVEGGSVWLHNVDIAPH 60
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
A F H + R+LLL K EI +L + G TLVP+ YFN K L K++LAL +G
Sbjct: 61 ATTARYFQHEAKAKRRLLLHKAEIRKLDGELADQGSTLVPLAFYFNDKNLLKVELALCKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
K DKR+ K+RD R RI +
Sbjct: 121 KNVRDKRQDIKERDDKRMMQRISK 144
>gi|257470134|ref|ZP_05634226.1| SsrA-binding protein [Fusobacterium ulcerans ATCC 49185]
gi|317064357|ref|ZP_07928842.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313690033|gb|EFS26868.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 146
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KA ++Y I FEAGI L G+EVKS + K++I +S+ N EI++ I
Sbjct: 2 ILAGNKKAFFDYFIEDKFEAGIELVGSEVKSAKAGKISIKESFIRIINGEIFIMGMSIVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL K+EI +L+ V + G T+VP+ ++ + KG K+++ALA+G
Sbjct: 62 WGFGSVYNPDERRVRKLLLHKKEIKKLHEKVSQKGYTIVPLNVHMS-KGYVKLEIALARG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KKNYDKRE+ K+D +R R+ +E
Sbjct: 121 KKNYDKRESLAKKDVERDLQRMAKER 146
>gi|305667225|ref|YP_003863512.1| SsrA-binding protein [Maribacter sp. HTCC2170]
gi|88708159|gb|EAR00397.1| SsrA-binding protein [Maribacter sp. HTCC2170]
Length = 153
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYI 70
+ N+KAR+ Y I+ + AGIVL+GTE+KS+R SK +IS+S+ F +N E+++ N I
Sbjct: 4 NINIKNKKARFEYEILDKYTAGIVLSGTEIKSIRQSKASISESFCEFNDNGELFIINMQI 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY A+ +NH P+ RKLLL+KRE+ +L V G+T++P+ ++ N +GLAK+++ALA
Sbjct: 64 DEYSHASHYNHKPKAERKLLLNKRELKKLQKEVASSGLTIIPLNLFLNERGLAKMNIALA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKRET K RD R RI + N
Sbjct: 124 KGKKLYDKRETMKDRDNKRDLDRIKKSFN 152
>gi|167753251|ref|ZP_02425378.1| hypothetical protein ALIPUT_01523 [Alistipes putredinis DSM 17216]
gi|167659182|gb|EDS03312.1| hypothetical protein ALIPUT_01523 [Alistipes putredinis DSM 17216]
Length = 174
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 102/148 (68%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + N++A ++Y I+ + AGIVL GTE+KS+R+ K +I+DSY F+ E+W+ I
Sbjct: 25 KNINIRNKRATFDYEIIEEWIAGIVLVGTEIKSVRLGKASITDSYCYFDKGELWIRGVNI 84
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY NH PRR+RKLLL+++E++++ A++ G+T+V ++++ N +GLAK+ + LA
Sbjct: 85 AEYGWGTCNNHVPRRDRKLLLNRKELNKIQRALQDRGLTVVGLRLFLNERGLAKVVVGLA 144
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K YDKRE K+ D R+ + ++++
Sbjct: 145 RGRKAYDKREYLKENDAKREMDKAMKKY 172
>gi|28493168|ref|NP_787329.1| SsrA-binding protein [Tropheryma whipplei str. Twist]
gi|39932375|sp|Q83N13|SSRP_TROWT RecName: Full=SsrA-binding protein
gi|28476208|gb|AAO44298.1| tmRNA (SsrA)-binding protein [Tropheryma whipplei str. Twist]
Length = 211
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/154 (46%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
R P V++ N+ A YNY + ++FEAG+VL G+EVKS+R K+++S++Y +N EIW
Sbjct: 18 ERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIW 77
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N YIPE+ NH PRR RKLLL K +I RL + G+TLVP+K YF G AK
Sbjct: 78 LANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFR-NGRAK 136
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +ALA+GKK DKRE K+R+ + +R L+
Sbjct: 137 LLIALARGKKLIDKREVIKEREATLEANRALKHR 170
>gi|227894357|ref|ZP_04012162.1| SsrA-binding protein [Lactobacillus ultunensis DSM 16047]
gi|227863827|gb|EEJ71248.1| SsrA-binding protein [Lactobacillus ultunensis DSM 16047]
Length = 152
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ + +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y N +L
Sbjct: 2 KEKKEENLIAQNKKARHDYFIKETVEAGIALTGTEIKSVRARRINLRDGYVQIINGSAFL 61
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I EY Q NR+NH P R+R+LLL K+EI+RL A G+ ++P+K+Y G AK+
Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEINRLAKAQAERGIAIIPLKVYLK-HGFAKV 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153
+ + QGKK YDKR+T K+RD R+ R
Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIRR 148
>gi|309319903|pdb|3IYQ|B Chain B, Tmrna-Smpb: A Journey To The Center Of The Bacterial
Ribosome
gi|309319905|pdb|3IYR|B Chain B, Tmrna-Smpb: A Journey To The Center Of The Bacterial
Ribosome
Length = 149
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 95/139 (68%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y
Sbjct: 3 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 62
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 63 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 122
Query: 134 KNYDKRETEKKRDWDRQKH 152
K Y+KR +KK R
Sbjct: 123 KAYEKRREDKKEAVRRALE 141
>gi|76788789|ref|YP_327875.1| SsrA-binding protein [Chlamydia trachomatis A/HAR-13]
gi|237802509|ref|YP_002887703.1| SsrA-binding protein [Chlamydia trachomatis B/Jali20/OT]
gi|237804425|ref|YP_002888579.1| SsrA-binding protein [Chlamydia trachomatis B/TZ1A828/OT]
gi|255348440|ref|ZP_05380447.1| SsrA-binding protein [Chlamydia trachomatis 70]
gi|255502982|ref|ZP_05381372.1| SsrA-binding protein [Chlamydia trachomatis 70s]
gi|255506652|ref|ZP_05382291.1| SsrA-binding protein [Chlamydia trachomatis D(s)2923]
gi|123607187|sp|Q3KMU5|SSRP_CHLTA RecName: Full=SsrA-binding protein
gi|76167319|gb|AAX50327.1| small protein B, SsrA-binding protein [Chlamydia trachomatis
A/HAR-13]
gi|231272725|emb|CAX09629.1| SsrA-binding protein [Chlamydia trachomatis B/TZ1A828/OT]
gi|231273743|emb|CAX10523.1| SsrA-binding protein [Chlamydia trachomatis B/Jali20/OT]
gi|289525121|emb|CBJ14592.1| SsrA-binding protein [Chlamydia trachomatis Sweden2]
gi|296434665|gb|ADH16843.1| SsrA-binding protein [Chlamydia trachomatis E/150]
gi|296438382|gb|ADH20535.1| SsrA-binding protein [Chlamydia trachomatis E/11023]
Length = 151
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K + NRKA ++Y ++ + +AGIVLTGTE+KSLR N+ D+Y T E WL S
Sbjct: 2 GVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSS 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N NH RR RKLLL K EIH+L A + + G+T+VP+ +F+ KG K+ +
Sbjct: 62 IAPYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTVVPLSFFFS-KGFVKVRIGC 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
+GKK +DKR++ +R+ +R+ ++
Sbjct: 121 CRGKKAHDKRQSIIEREKNRELAAAMKR 148
>gi|29345589|ref|NP_809092.1| SsrA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
gi|253571734|ref|ZP_04849140.1| SsrA-binding protein [Bacteroides sp. 1_1_6]
gi|298384510|ref|ZP_06994070.1| SsrA-binding protein [Bacteroides sp. 1_1_14]
gi|39932391|sp|Q8ABD1|SSRP_BACTN RecName: Full=SsrA-binding protein
gi|29337481|gb|AAO75286.1| SsrA-binding protein [Bacteroides thetaiotaomicron VPI-5482]
gi|251838942|gb|EES67027.1| SsrA-binding protein [Bacteroides sp. 1_1_6]
gi|298262789|gb|EFI05653.1| SsrA-binding protein [Bacteroides sp. 1_1_14]
Length = 150
Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 100/145 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E
Sbjct: 6 VNIKNKRATFDYELMDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFAKGELWVKNMHIAE 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + NH RR+RKLLL+K+E+ ++ ++ G T VP++++ N KGLAK+ +ALA+G
Sbjct: 66 YFYGSYNNHTARRDRKLLLNKKELEKIQRGMKDPGFTTVPVRLFINEKGLAKLVVALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK YDKRE+ K++D R R+ +
Sbjct: 126 KKQYDKRESIKEKDDRRDMARMFKR 150
>gi|28572719|ref|NP_789499.1| SsrA-binding protein [Tropheryma whipplei TW08/27]
gi|39932376|sp|Q83NF6|SSRP_TROW8 RecName: Full=SsrA-binding protein
gi|28410852|emb|CAD67237.1| ssrA-binding protein [Tropheryma whipplei TW08/27]
Length = 211
Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 1/154 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
R P V++ N+ A YNY + ++FEAG+VL G+EVKS+R K+++S++Y +N EIW
Sbjct: 18 ERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIW 77
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L N YIPE+ NH PRR RKLLL K +I RL + G+TLVP+K YF G AK
Sbjct: 78 LANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFR-NGRAK 136
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ ++LA+GKK DKRE K+R+ + +R L+
Sbjct: 137 LLISLARGKKLIDKREVIKEREATLEANRALKHR 170
>gi|46198854|ref|YP_004521.1| SsrA-binding protein [Thermus thermophilus HB27]
gi|55980871|ref|YP_144168.1| SsrA-binding protein [Thermus thermophilus HB8]
gi|30173332|sp|Q8RR57|SSRP_THET8 RecName: Full=SsrA-binding protein
gi|61216560|sp|Q72KA1|SSRP_THET2 RecName: Full=SsrA-binding protein
gi|28948412|pdb|1J1H|A Chain A, Solution Structure Of A Tmrna-Binding Protein, Smpb, From
Thermus Thermophilus
gi|19911183|dbj|BAB86918.1| small protein B [Thermus thermophilus]
gi|46196477|gb|AAS80894.1| ssrA-binding protein [Thermus thermophilus HB27]
gi|55772284|dbj|BAD70725.1| SsrA (tmRNA)-binding protein [Thermus thermophilus HB8]
Length = 144
Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 71/139 (51%), Positives = 95/139 (68%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y
Sbjct: 4 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 63
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 64 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
Query: 134 KNYDKRETEKKRDWDRQKH 152
K Y+KR +KK R
Sbjct: 124 KAYEKRREDKKEAVRRALE 142
>gi|169835554|ref|ZP_02868742.1| SsrA-binding protein [candidate division TM7 single-cell isolate
TM7a]
Length = 149
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ +EI++ N +I
Sbjct: 3 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKVSIKESFIRIIRNEIFVMNMHITP 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y N N R RKLLL++REI + ++ G T+VP+ +Y + L K+++ LA+G
Sbjct: 63 YEFGNINNVAESRVRKLLLNRREIKKWSEKIQEQGYTIVPISVYTKQR-LVKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE+ K++D +R ++ +
Sbjct: 122 KKMHDKRESLKRKDIERDMKKLQKNF 147
>gi|329942798|ref|ZP_08291577.1| ssrA-binding protein [Chlamydophila psittaci Cal10]
gi|313847970|emb|CBY16967.1| ssra-binding protein [Chlamydophila psittaci RD1]
gi|325506791|gb|ADZ18429.1| ssrA-binding protein [Chlamydophila psittaci 6BC]
gi|328815058|gb|EGF85047.1| ssrA-binding protein [Chlamydophila psittaci Cal10]
Length = 150
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + NRKA +NY ++ S EAGIVLTGTE+KSLR N+ D+Y T E WL N+ I
Sbjct: 3 SKEIVSNRKALHNYEVLESLEAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNASI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + EIH+L V + G+T++P+ ++ + +G K+ L
Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYEIHKLEVKVAQKGVTIIPLGMFLS-RGYVKVRLGCC 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK++DKR+T R+ +R+ ++ +
Sbjct: 122 RGKKSHDKRQTIIAREKEREIASAMKRY 149
>gi|237744661|ref|ZP_04575142.1| small protein B [Fusobacterium sp. 7_1]
gi|229431890|gb|EEO42102.1| small protein B [Fusobacterium sp. 7_1]
Length = 148
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G
Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R + +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKNNN 147
>gi|309388877|gb|ADO76757.1| SsrA-binding protein [Halanaerobium praevalens DSM 2228]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + +++ N+KAR++++I ++EAGI L GTE+KS+R KVN+ DS+A N
Sbjct: 1 MAKKKEID----IIARNKKARHDFYIEETYEAGIKLKGTEIKSIRNHKVNLKDSFALVRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + NR+NH P R RKLLL K EI +L + G TLVP+ +Y K
Sbjct: 57 GEVYLHNMHISPYKEGNRYNHRPERRRKLLLHKNEIRKLIGYTTQKGYTLVPLTLYLK-K 115
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ K++LA+A+GK+ +DKR K+ R+ + R
Sbjct: 116 NICKVELAVAKGKQQHDKRRDIAKKTAKREMEKAFRRR 153
>gi|297181524|gb|ADI17710.1| tmRNA-binding protein [uncultured Oceanospirillales bacterium
HF0130_25G24]
Length = 164
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
K + P + N+KAR+++ I +FE+GI L G EVKSLR+ KV + DSY T ++
Sbjct: 6 KAKRKTKAPDTTIVVNKKARHDFFIENTFESGIALQGWEVKSLRLKKVQLVDSYVTLKDG 65
Query: 62 EIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E +L I N P R +KLLL K+E+ +L++A ++ G T V K+Y+
Sbjct: 66 EAFLLGCNISPLNTTNTHTVADPSRTKKLLLHKKELAKLFSATQQKGHTCVCTKMYWKNH 125
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
L K +ALA+GK+++DKR T K R+W+ K RI+R+ N
Sbjct: 126 -LIKCQIALAKGKQSHDKRATVKDREWNIDKQRIVRQAN 163
>gi|187250934|ref|YP_001875416.1| SsrA-binding protein [Elusimicrobium minutum Pei191]
gi|254778362|sp|B2KCF8|SSRP_ELUMP RecName: Full=SsrA-binding protein
gi|186971094|gb|ACC98079.1| SsrA-binding protein [Elusimicrobium minutum Pei191]
Length = 157
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + V + NRKA +NYHI+ ++EAGI L G+EVKS+R +V++ ++ E
Sbjct: 1 MAKK---DNGPLVAATNRKAYHNYHILDTYEAGIELLGSEVKSIRKKEVSLDGAFVRIEG 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
+ ++ N +I Y P R R+LLL+K+EI++L G T++P+++YF
Sbjct: 58 MQAYVFNMHINPYKYNTVTEVEPLRQRRLLLNKKEINKLKGHAEIKGHTIIPLEVYFK-N 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AKI + L +GK+ +DKR+ KKRD R+ + +
Sbjct: 117 GWAKIKVGLGKGKQLFDKRDAIKKRDLSREMEKDFKNK 154
>gi|150025926|ref|YP_001296752.1| SsrA-binding protein [Flavobacterium psychrophilum JIP02/86]
gi|166979670|sp|A6H0S6|SSRP_FLAPJ RecName: Full=SsrA-binding protein
gi|149772467|emb|CAL43950.1| SsrA-binding protein [Flavobacterium psychrophilum JIP02/86]
Length = 150
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 106/146 (72%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A++ Y I+ + AG+VLTGTE+KS+R+ K NI++S+ F+ DE+++ NS+I E
Sbjct: 5 VNILNKRAKFEYEIIDRYTAGMVLTGTEIKSIRLGKANIAESFCEFQGDELFVINSHIEE 64
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
YL +++NH P+ RKLLL+KRE+ L V+ G+T++P++++ N KG+AK+D+AL +G
Sbjct: 65 YLFGHQYNHKPKSERKLLLNKRELKGLLKDVQNKGLTIIPLRLFTNEKGMAKLDIALCKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRET K RD R RI +E
Sbjct: 125 KKTFDKRETIKDRDNKRDLDRIKKEF 150
>gi|62185061|ref|YP_219846.1| SsrA-binding protein [Chlamydophila abortus S26/3]
gi|81312773|sp|Q5L646|SSRP_CHLAB RecName: Full=SsrA-binding protein
gi|62148128|emb|CAH63885.1| ssra-binding protein [Chlamydophila abortus S26/3]
Length = 150
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + NRKA +NY ++ S EAGIVLTGTE+KSLR N+ D+Y E WL N+ I
Sbjct: 3 SKEIVSNRKALHNYEVLESLEAGIVLTGTEIKSLRDHGGNLGDAYVAISKGEAWLLNASI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + EIH+L V + G+T++P+ ++ + +G K+ L
Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYEIHKLEVKVAQKGVTIIPLGMFLS-RGYVKVRLGCC 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK++DKR+T R+ +R+ ++ +
Sbjct: 122 RGKKSHDKRQTIIAREKEREIASAMKRY 149
>gi|133919932|emb|CAM12492.1| hypothetical protein [uncultured bacterium]
Length = 159
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KAR++Y I FEAG+ L G EVKS+R +I +++ N E++L N+ I
Sbjct: 10 IIQNKKARFDYDIAEKFEAGLELRGWEVKSIRAGGASIKEAHVFVRNGELFLLNANITPL 69
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P RNRKLLL K EI RL V + G +L+P+ ++F G K++L L +G
Sbjct: 70 KTASTHEKADPTRNRKLLLHKHEIMRLIGRVEQAGYSLIPLDMHFKD-GRVKLELGLGKG 128
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK ++KR KR+W R++ R+L+
Sbjct: 129 KKLFEKRADIGKREWKREQGRLLKNR 154
>gi|91201341|emb|CAJ74401.1| strong similarity to SsrA-binding protein [Candidatus Kuenenia
stuttgartiensis]
Length = 147
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/146 (47%), Positives = 102/146 (69%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ NRKA Y Y ++ E GIVLTGTEVKSLR V+I+DS+A ++ E +L +I E
Sbjct: 3 IIAKNRKAFYQYEVLEKIECGIVLTGTEVKSLRNKDVSINDSFAQLDHGEAFLYEMHIGE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y Q NR NH P+R RKLLL KREI ++ V++ G TL+P+ IYF GLAK+++A+A+G
Sbjct: 63 YKQGNRQNHEPKRKRKLLLHKREISKIAGKVQQKGYTLIPLSIYFK-NGLAKLEIAIARG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K +DKRE KKR +R+ +++++
Sbjct: 122 KSMFDKREDIKKRTVEREIRQVMKKF 147
>gi|256844947|ref|ZP_05550405.1| SsrA-binding protein [Fusobacterium sp. 3_1_36A2]
gi|294785768|ref|ZP_06751056.1| SsrA-binding protein [Fusobacterium sp. 3_1_27]
gi|256718506|gb|EEU32061.1| SsrA-binding protein [Fusobacterium sp. 3_1_36A2]
gi|294487482|gb|EFG34844.1| SsrA-binding protein [Fusobacterium sp. 3_1_27]
Length = 148
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G
Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R + +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKSNN 147
>gi|221632272|ref|YP_002521493.1| SsrA-binding protein [Thermomicrobium roseum DSM 5159]
gi|221156978|gb|ACM06105.1| SsrA-binding protein [Thermomicrobium roseum DSM 5159]
Length = 160
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 3/140 (2%)
Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
MS ++ +KV++ NRKA ++Y I EAGI LTG+E+KS+R +VN+ D+YA E
Sbjct: 1 MSKGTAKSREGEKVIAVNRKAYHDYFIEEELEAGIQLTGSEIKSIRAGRVNLRDAYARIE 60
Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E+WL ++ Y + + H P R RKLL+ KRE+ L + + G TLVP+++
Sbjct: 61 DGELWLIGMHVSPYPGASGKHQHDPTRPRKLLVHKRELDYLRGKLEKRGYTLVPLRLVIR 120
Query: 119 AKGLAKIDLALAQGKKNYDK 138
+GLAKIDL LA+GKK YDK
Sbjct: 121 -RGLAKIDLGLARGKKQYDK 139
>gi|302338519|ref|YP_003803725.1| SsrA-binding protein [Spirochaeta smaragdinae DSM 11293]
gi|301635704|gb|ADK81131.1| SsrA-binding protein [Spirochaeta smaragdinae DSM 11293]
Length = 178
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 58/143 (40%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
+ + K +++NRKAR+ Y I + E GI L GTEVKSLR K + +D+Y E
Sbjct: 23 KKEHMDDNGIKQLANNRKARFLYTIEETLECGIELKGTEVKSLRTGKFSFTDAYGKIERG 82
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+ +L +I Y N +NH P RNR+LL KREI +L V G TLVP++ Y G
Sbjct: 83 QFYLCGLHISPYAFGNIYNHDPDRNRRLLAHKREIEKLRRKVDEKGFTLVPLRFYLK-HG 141
Query: 122 LAKIDLALAQGKKNYDKRETEKK 144
K+++ L +GKK +DKR+ K+
Sbjct: 142 RVKVEMGLGKGKKLHDKRDAIKQ 164
>gi|282880705|ref|ZP_06289407.1| SsrA-binding protein [Prevotella timonensis CRIS 5C-B1]
gi|281305431|gb|EFA97489.1| SsrA-binding protein [Prevotella timonensis CRIS 5C-B1]
Length = 160
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 63/160 (39%), Positives = 99/160 (61%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKK--VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M K KK + N++A + Y + ++ AGIVLTGTE+KS+R+ K ++ D++
Sbjct: 1 MMNKDEQALRKKSPIQIKNKRASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYI 60
Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
N EIW+ I Y + NH RR+RKLLL+KREI RL + G T++P+ ++ +
Sbjct: 61 NNGEIWVKGMNISPYFYGSFSNHEARRDRKLLLTKREIRRLEIDAKNPGNTILPVLLFID 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
KG AK+D+ LA+GKK YDKR++ K+++ R+ R L+ +
Sbjct: 121 QKGRAKVDIVLAKGKKEYDKRQSLKEKEDQREMDRALKHY 160
>gi|58336786|ref|YP_193371.1| SsrA-binding protein [Lactobacillus acidophilus NCFM]
gi|227904546|ref|ZP_04022351.1| SsrA-binding protein [Lactobacillus acidophilus ATCC 4796]
gi|67461235|sp|Q5FLT4|SSRP_LACAC RecName: Full=SsrA-binding protein
gi|58254103|gb|AAV42340.1| ssrA-binding protein [Lactobacillus acidophilus NCFM]
gi|227867709|gb|EEJ75130.1| SsrA-binding protein [Lactobacillus acidophilus ATCC 4796]
Length = 151
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 4/151 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y N
Sbjct: 1 MKEKE---ENLIAQNKKARHDYFIKETLEAGIALTGTEIKSVRARRINLRDGYVQIINGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY Q NR+NH P R+R+LLL K+EI+RL G+ ++P+K+Y G
Sbjct: 58 AYLENVHISEYKQGNRYNHDPLRSRRLLLHKKEINRLAKVQAERGIAIIPLKVYLK-HGF 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ + + QGKK YDKR+T K+RD R+ R
Sbjct: 117 AKVLIGVGQGKKEYDKRQTIKERDQKREIRR 147
>gi|108804440|ref|YP_644377.1| SsrA-binding protein [Rubrobacter xylanophilus DSM 9941]
gi|122975962|sp|Q1AVL3|SSRP_RUBXD RecName: Full=SsrA-binding protein
gi|108765683|gb|ABG04565.1| SsrA-binding protein [Rubrobacter xylanophilus DSM 9941]
Length = 150
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
+ NRKA +++ I ++EAGI LTG EVKS+R + N+ +SY N E++L ++I Y
Sbjct: 5 ARNRKALHDFDIEETYEAGIALTGPEVKSVREGRANLRESYVRVRNGEVFLVGAHISPYK 64
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
A P R+RKLLL ++EI RL + + T++P+++Y GL K+++A+A K+
Sbjct: 65 NATNVPQEPTRDRKLLLHRKEIDRLAGKSQEERKTIIPLRLYPK-NGLVKLEIAVASRKR 123
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
YDKR K+ R+ R ++E
Sbjct: 124 QYDKRREIAKKTAQREIERAMKER 147
>gi|291277165|ref|YP_003516937.1| SsrA-binding protein [Helicobacter mustelae 12198]
gi|290964359|emb|CBG40209.1| SsrA-binding protein [Helicobacter mustelae 12198]
Length = 153
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KA ++Y I+ S EAGIVL G+EVK+LR +VN+ DS+ E+++ ++I
Sbjct: 3 IIARNKKAFFDYEILESLEAGIVLLGSEVKALRKGRVNLKDSFVKVVKGEMFMFGAHISY 62
Query: 73 YLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ R RKLLL +R+I RL+ AV + G+++VP+KIYFNA+ AK+++AL +
Sbjct: 63 LETTYLYYKPNETRPRKLLLHRRQIDRLFGAVSQQGLSIVPLKIYFNARNHAKLEIALVR 122
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK +DKRE+ K++ +++ ++ +
Sbjct: 123 GKNLHDKRESIKRKMLEKEARANMKNY 149
>gi|296327513|ref|ZP_06870059.1| SsrA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
gi|296155339|gb|EFG96110.1| SsrA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
23726]
Length = 148
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +++ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKEAFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G
Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R + +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKSNN 147
>gi|328914639|gb|AEB55472.1| SsrA-binding protein [Chlamydophila psittaci 6BC]
Length = 156
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + NRKA +NY ++ S EAGIVLTGTE+KSLR N+ D+Y T E WL N+ I
Sbjct: 9 SKEIVSNRKALHNYEVLESLEAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNASI 68
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + EIH+L V + G+T++P+ ++ + +G K+ L
Sbjct: 69 APYRFGNIYNHEERRKRKLLLHRYEIHKLEVKVAQKGVTIIPLGMFLS-RGYVKVRLGCC 127
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK++DKR+T R+ +R+ ++ +
Sbjct: 128 RGKKSHDKRQTIIAREKEREIASAMKRY 155
>gi|310779454|ref|YP_003967787.1| SsrA-binding protein [Ilyobacter polytropus DSM 2926]
gi|309748777|gb|ADO83439.1| SsrA-binding protein [Ilyobacter polytropus DSM 2926]
Length = 147
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+++ N+KA + + I +EAGI L G+EVKS++ KV+I +++ N+EI++ +
Sbjct: 2 ILAKNKKAFHEFFIDERYEAGIELIGSEVKSIKAGKVSIKEAFVRIINNEIFIMGMSVTP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N +R RKLLL K+EI +L+ V + G T+VP+ +Y KG K+ +ALA+G
Sbjct: 62 WAYGSVYNPDEKRVRKLLLHKKEIKKLHENVSQKGCTIVPISVYTK-KGFVKVQIALARG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KKNYDKRE+ KRD RQ R ++E
Sbjct: 121 KKNYDKRESLAKRDQQRQMDREIKER 146
>gi|317496545|ref|ZP_07954894.1| SsrA-binding protein [Gemella moribillum M424]
gi|316913348|gb|EFV34845.1| SsrA-binding protein [Gemella moribillum M424]
Length = 154
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 61/151 (40%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
N KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R ++N+ DSY E+++ N
Sbjct: 2 NKEIKVIAQNKKANHDYFIEDTYEAGLVLTGTEIKSIRRGRINLKDSYCQSRRGEMFVYN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + + NRFNH P R RKLLL K++I L G++++P+K+Y G AK+ +
Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIAVLTNVQNEVGISIIPLKLYIK-NGYAKLLI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+A+GKKNYDKR K+++ ++ +R+L++
Sbjct: 121 GVAKGKKNYDKRHVLKQKEATKEINRVLKDK 151
>gi|260891254|ref|ZP_05902517.1| SsrA-binding protein [Leptotrichia hofstadii F0254]
gi|260859281|gb|EEX73781.1| SsrA-binding protein [Leptotrichia hofstadii F0254]
Length = 154
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ DE+++ N +I
Sbjct: 8 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKVSIKESFIRIIRDEVFVMNMHITP 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y N N R RKLLL++REI + ++ G T+VP+ +Y + L K+++ LA+G
Sbjct: 68 YEFGNINNVAESRVRKLLLNRREIKKWSEKIKEQGYTIVPISVYTKQR-LVKMEIGLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE+ K++D DR +I +
Sbjct: 127 KKMHDKRESLKRKDIDRDMKKIQKNF 152
>gi|270487281|ref|ZP_06204355.1| SsrA-binding protein [Yersinia pestis KIM D27]
gi|270335785|gb|EFA46562.1| SsrA-binding protein [Yersinia pestis KIM D27]
Length = 152
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 2/135 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N
Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 64
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+
Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 123
Query: 120 KGLAKIDLALAQGKK 134
K+ + +A+GKK
Sbjct: 124 NAWVKVKIGVAKGKK 138
>gi|87301992|ref|ZP_01084826.1| SsrA-binding protein [Synechococcus sp. WH 5701]
gi|87283560|gb|EAQ75515.1| SsrA-binding protein [Synechococcus sp. WH 5701]
Length = 165
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
++++DNR AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +
Sbjct: 17 SNRLLADNRFARHQYEILETLETGIELVGTEVKSIRAGKANLRDGFGLIRNGELQLHNVH 76
Query: 70 IPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I + A FNH P R RKLL +REI +L A+ + G+TLVP+ ++ K+ L
Sbjct: 77 ISPHSHAGAYFNHEPLRTRKLLAHRREIDKLRVALDQKGLTLVPLNLHLKGS-WIKLTLG 135
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157
LA+G+K +DKR+ E+++D DR+ L
Sbjct: 136 LAKGRKLHDKRQEERRKDADREVRSALAR 164
>gi|19703944|ref|NP_603506.1| SsrA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|22096158|sp|Q8RFS8|SSRP_FUSNN RecName: Full=SsrA-binding protein
gi|19714118|gb|AAL94805.1| Small protein B [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 148
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +++ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKEAFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG K+ +A+A+G
Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKMQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R + +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKNNN 147
>gi|254432363|ref|ZP_05046066.1| SsrA-binding protein [Cyanobium sp. PCC 7001]
gi|197626816|gb|EDY39375.1| SsrA-binding protein [Cyanobium sp. PCC 7001]
Length = 166
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++DNR AR+ Y I+ + E GI L GTEVKS+R +VN+ D + N E+ L N +I
Sbjct: 20 RLLADNRLARHQYEILDTLETGIELLGTEVKSIRAGQVNLRDGFCLIRNGELQLHNVHIS 79
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ A FNH P R RKLL +REI +L A+ + G+TL+P+ ++ K+ L L
Sbjct: 80 PHSHAGAYFNHDPLRVRKLLAHRREIDKLRGALDQKGLTLIPLNLHLKGS-WIKVTLGLG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR+ E+++ R+ + +
Sbjct: 139 KGRKLHDKRQEERRKQDARETRAAIARY 166
>gi|302878818|ref|YP_003847382.1| SsrA-binding protein [Gallionella capsiferriformans ES-2]
gi|302581607|gb|ADL55618.1| SsrA-binding protein [Gallionella capsiferriformans ES-2]
Length = 149
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 48/145 (33%), Positives = 88/145 (60%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA + Y + +EAG++L G EVK++R + + ++Y T ++ ++L S+I
Sbjct: 3 IIQNKKAFHEYFVEDKYEAGLMLEGWEVKAIRAGRAQLKEAYVTAKDGALYLFGSHISPL 62
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
L + + P R RKLLL EI ++ V+R G T++P+ +++ G K+ + LA+G
Sbjct: 63 LNASTHIHPDPVRTRKLLLHAAEISKILIKVQRAGYTVMPLDMHYKG-GRVKLAIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR TEK++D R+ + +++
Sbjct: 122 KKLHDKRATEKEKDSKREVAQAMKK 146
>gi|256851443|ref|ZP_05556832.1| SsrA-binding protein [Lactobacillus jensenii 27-2-CHN]
gi|260660864|ref|ZP_05861779.1| SsrA-binding protein [Lactobacillus jensenii 115-3-CHN]
gi|282933107|ref|ZP_06338494.1| SsrA-binding protein [Lactobacillus jensenii 208-1]
gi|297206258|ref|ZP_06923653.1| SsrA-binding protein [Lactobacillus jensenii JV-V16]
gi|256616505|gb|EEU21693.1| SsrA-binding protein [Lactobacillus jensenii 27-2-CHN]
gi|260548586|gb|EEX24561.1| SsrA-binding protein [Lactobacillus jensenii 115-3-CHN]
gi|281302611|gb|EFA94826.1| SsrA-binding protein [Lactobacillus jensenii 208-1]
gi|297149384|gb|EFH29682.1| SsrA-binding protein [Lactobacillus jensenii JV-V16]
Length = 151
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 70/150 (46%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
N V++ N+KA ++Y I + EAGI LTGTE+KS+R ++ + D Y N +L
Sbjct: 2 KNETNNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYLE 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I EY Q N +NH P R R+LLL K+EI +L + GMT++P+K+Y KG AKI
Sbjct: 62 NVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEIQAQQGMTIIPLKVYLK-KGFAKIL 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILR 156
L + QGKK YDKRET KKRD +R+ R R
Sbjct: 121 LGVGQGKKQYDKRETIKKRDQERELRRKYR 150
>gi|33241681|ref|NP_876622.1| SsrA-binding protein [Chlamydophila pneumoniae TW-183]
gi|33236190|gb|AAP98279.1| SmpB [Chlamydophila pneumoniae TW-183]
Length = 165
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I
Sbjct: 17 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 76
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + E+ +L + + GMTL+P+ + + +G K+ L
Sbjct: 77 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMLLS-RGYVKVRLGCC 135
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR T +R+ +R+ ++
Sbjct: 136 RGKKAYDKRRTIIEREKEREVAAAMKRR 163
>gi|42522228|ref|NP_967608.1| SsrA-binding protein [Bdellovibrio bacteriovorus HD100]
gi|61216532|sp|Q6MQ46|SSRP_BDEBA RecName: Full=SsrA-binding protein
gi|39574759|emb|CAE78601.1| SSRA-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 152
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
+ +V +N+KAR++Y IV ++EAG+ L G+EVKSLR V + DSY +F+ DE +L N
Sbjct: 2 SENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
++I EY ++ NH P R+RKLL+ + E+ ++ A+R G + VP+KIYF G AK+ +
Sbjct: 62 AHIAEYKASSYNNHVPERHRKLLMHRNELDEIFEALREKGYSCVPLKIYFK-NGRAKLQI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AL +GKK +DKRE KKRD Q LR
Sbjct: 121 ALVKGKKTHDKREAIKKRDVSDQIRSSLRR 150
>gi|227485030|ref|ZP_03915346.1| tmRNA-binding protein [Anaerococcus lactolyticus ATCC 51172]
gi|227237027|gb|EEI87042.1| tmRNA-binding protein [Anaerococcus lactolyticus ATCC 51172]
Length = 148
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 97/147 (65%), Gaps = 2/147 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA ++Y I +EAG+ L G+EVKS++ KV+I +++ + + E+++ ++
Sbjct: 4 KLLANNKKAFHDYFIEEKYEAGLELKGSEVKSIKAGKVSIKEAFISDKKGEMFVYGMHVT 63
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y P R RKLLL K+EI++L DG TLVP+K+Y N GL KI++ALA+
Sbjct: 64 PY-MEGFDKIDPTRTRKLLLHKKEINKLVGKKTVDGYTLVPLKVYEN-NGLVKIEIALAK 121
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE+ K++D R+ R L+ +
Sbjct: 122 GKKMYDKRESIKRKDDKRRMERALKNY 148
>gi|262067492|ref|ZP_06027104.1| SsrA-binding protein [Fusobacterium periodonticum ATCC 33693]
gi|291378854|gb|EFE86372.1| SsrA-binding protein [Fusobacterium periodonticum ATCC 33693]
Length = 148
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ N EI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINGEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL K+EI +++ V+ G T+VP+ ++ + KG K+ +A+A+G
Sbjct: 62 WEYGSIYNPEERRVRKLLLHKKEIKKIHEQVKIKGYTIVPLDVHLS-KGYVKVQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R L+ +N
Sbjct: 121 KKTYDKRESIAKKDQERNIKRDLKINN 147
>gi|218295505|ref|ZP_03496318.1| SsrA-binding protein [Thermus aquaticus Y51MC23]
gi|218244137|gb|EED10663.1| SsrA-binding protein [Thermus aquaticus Y51MC23]
Length = 144
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 69/137 (50%), Positives = 93/137 (67%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
+NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A F+N E++L N YI Y +
Sbjct: 6 ENRRARHDYEILETYEAGIALKGTEVKSLREGKVDFTGSFARFQNGELYLENLYIAPYEK 65
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GKK
Sbjct: 66 GSYMNVDPRRPRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGKKA 125
Query: 136 YDKRETEKKRDWDRQKH 152
Y K+ +KK R
Sbjct: 126 YQKKLDDKKEAVRRALE 142
>gi|86131949|ref|ZP_01050546.1| SsrA-binding protein [Dokdonia donghaensis MED134]
gi|85817771|gb|EAQ38945.1| SsrA-binding protein [Dokdonia donghaensis MED134]
Length = 153
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 67/148 (45%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIP 71
V NRKAR+ Y I+ AGIVL GTE+K++R K +I++S+ F + E+++ N +
Sbjct: 5 VNIKNRKARFEYEILDRLVAGIVLAGTEIKAIREGKASIAESFCEFNDQGEMFVINMTVQ 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY A FNH P+ RKLLL+KRE+ + V + G+T+VP++++ N KG AK+++ALA+
Sbjct: 65 EYSHATYFNHNPKSERKLLLNKRELKKWEREVNKSGLTIVPLRLFTNEKGFAKLEIALAK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKRET K RD + RI + N
Sbjct: 125 GKKTYDKRETIKDRDNKKNLDRIKKAFN 152
>gi|332168953|gb|AEE18208.1| SsrA-binding protein [Krokinobacter diaphorus 4H-3-7-5]
Length = 153
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 1/148 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIP 71
V NR+AR+ Y ++ AGIVL GTE+K++R K +I++S+ F + E+++ N +
Sbjct: 5 VNIKNRRARFEYELLDKLVAGIVLAGTEIKAIREGKASIAESFCEFNDHGEMFVINMTVQ 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY A FNH P+ RKLLL+KRE+ + V + G+T+VP++++ N KG AK+++ALA+
Sbjct: 65 EYSHATYFNHQPKNQRKLLLNKRELKKWEREVNKSGLTIVPLRLFTNEKGFAKLEIALAK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GKK YDKRET K RD + RI + N
Sbjct: 125 GKKTYDKRETIKDRDNKKNLDRIKKSFN 152
>gi|16752702|ref|NP_444969.1| SsrA-binding protein [Chlamydophila pneumoniae AR39]
gi|7189345|gb|AAF38264.1| smpB protein [Chlamydophila pneumoniae AR39]
Length = 165
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I
Sbjct: 17 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 76
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + E+ +L + + GMTL+P+ + + +G K+ L
Sbjct: 77 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMXLS-RGYVKVRLGCC 135
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR T +R+ +R+ ++
Sbjct: 136 RGKKAYDKRRTIIEREKEREVAAAMKRR 163
>gi|257126740|ref|YP_003164854.1| SsrA-binding protein [Leptotrichia buccalis C-1013-b]
gi|257050679|gb|ACV39863.1| SsrA-binding protein [Leptotrichia buccalis C-1013-b]
Length = 152
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ DE+++ N +I
Sbjct: 3 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKVSIKESFIRIIRDEVFVMNMHITP 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y N N R RKLLL++REI + ++ G T+VP+ +Y + L K+++ LA+G
Sbjct: 63 YEFGNINNVAESRVRKLLLNRREIKKWSEKIKEQGYTIVPISVYTKQR-LVKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE+ K++D +R ++ +
Sbjct: 122 KKMHDKRESLKRKDIERDMKKVQKNF 147
>gi|219128046|ref|XP_002184234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404465|gb|EEC44412.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 160
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF--END 61
K + +S NR A NY IV + EAGI L GTEVKS+R K+N+ D Y +
Sbjct: 1 KKKNKTRDSTISVNRVAYRNYEIVDTIEAGISLVGTEVKSIRNGKLNLRDGYIRPTKDGR 60
Query: 62 EIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
L N +I ++ QA F H R R LL+ K E + + GMT+VP+K Y+N K
Sbjct: 61 SCILYNVHIGKHSQAGAFFQHEETRPRALLVHKAEARKFLQQTEQQGMTIVPLKAYYNDK 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K+ +AL +GK DKR T K+RD R++ RI++
Sbjct: 121 NRVKLQIALCRGKNVRDKRVTIKERDAKREERRIIKSF 158
>gi|320161255|ref|YP_004174479.1| SsrA-binding protein [Anaerolinea thermophila UNI-1]
gi|319995108|dbj|BAJ63879.1| SsrA-binding protein [Anaerolinea thermophila UNI-1]
Length = 157
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 64/138 (46%), Positives = 96/138 (69%), Gaps = 6/138 (4%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M++K KVV+ NRKA++ Y ++ +EAGI L G+E+KS+R +V++++++ +
Sbjct: 1 MAVK-----NVKVVATNRKAQFEYFLLERYEAGIALQGSEIKSVRAGQVSLAEAFVQVDG 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E WL N++I Y A+RFNH PRR R+LLL KREI L+ AVR G+T+VP+ IY
Sbjct: 56 REAWLVNAHIAPYNPASRFNHDPRRPRRLLLHKREILELWNAVRAKGVTVVPVSIYLKE- 114
Query: 121 GLAKIDLALAQGKKNYDK 138
G AK+++A+A+GKK YDK
Sbjct: 115 GKAKVEIAIAKGKKLYDK 132
>gi|294501755|ref|YP_003565455.1| tmRNA-binding protein [Bacillus megaterium QM B1551]
gi|295707105|ref|YP_003600180.1| tmRNA-binding protein [Bacillus megaterium DSM 319]
gi|294351692|gb|ADE72021.1| tmRNA-binding protein [Bacillus megaterium QM B1551]
gi|294804764|gb|ADF41830.1| tmRNA-binding protein [Bacillus megaterium DSM 319]
Length = 155
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KAR+++ I ++E GIVL GTE+KS+R +VN+ DS+A +N E++L N ++
Sbjct: 7 KLIAQNKKARHDFFIEETYETGIVLQGTEIKSIRNGRVNLKDSFARVQNGEVFLHNMHVS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLLL KREI +L + G +LVP+K+Y G AK+ L L +
Sbjct: 67 PYEQGNRYNHEPLRTRKLLLHKREISKLIGYSKETGYSLVPLKVYLK-NGYAKVLLGLGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K+++ R R R+
Sbjct: 126 GKKKYDKREDLKRKEAKRDIERAFRDR 152
>gi|15604795|ref|NP_219579.1| SsrA-binding protein [Chlamydia trachomatis D/UW-3/CX]
gi|255310879|ref|ZP_05353449.1| SsrA-binding protein [Chlamydia trachomatis 6276]
gi|255317179|ref|ZP_05358425.1| SsrA-binding protein [Chlamydia trachomatis 6276s]
gi|6685979|sp|O84079|SSRP_CHLTR RecName: Full=SsrA-binding protein
gi|3328471|gb|AAC67667.1| Small Protein B [Chlamydia trachomatis D/UW-3/CX]
gi|296435594|gb|ADH17768.1| SsrA-binding protein [Chlamydia trachomatis G/9768]
gi|296436518|gb|ADH18688.1| SsrA-binding protein [Chlamydia trachomatis G/11222]
gi|296437454|gb|ADH19615.1| SsrA-binding protein [Chlamydia trachomatis G/11074]
gi|297139953|gb|ADH96711.1| SsrA-binding protein [Chlamydia trachomatis G/9301]
gi|297748205|gb|ADI50751.1| SsrA-binding protein [Chlamydia trachomatis D-EC]
gi|297749085|gb|ADI51763.1| SsrA-binding protein [Chlamydia trachomatis D-LC]
Length = 151
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K + NRKA ++Y ++ + +AGIVLTGTE+KSLR N+ D+Y T E WL S
Sbjct: 2 GVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSS 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N NH RR RKLLL K EIH+L A + + G+T+VP+ +F+ KG K+ +
Sbjct: 62 IALYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTVVPLSFFFS-KGFVKVRIGC 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
+GKK +DKR++ +R+ +R+ ++
Sbjct: 121 CRGKKAHDKRQSIIEREKNRELAAAMKR 148
>gi|295134932|ref|YP_003585608.1| SsrA-binding protein [Zunongwangia profunda SM-A87]
gi|294982947|gb|ADF53412.1| SsrA-binding protein [Zunongwangia profunda SM-A87]
Length = 153
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 101/147 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ NRKA++ Y + + AGI L GTE+K++R K +I++S+ F++ E+++ N ++ E
Sbjct: 7 INIKNRKAKFQYEFLDKYIAGIKLAGTEIKAIRQGKASIAESFCEFQDGELYVINMHVEE 66
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A FNH P+ RKLLL KRE+ +L V+ G+T++P++++ N +GLAKI + LA+G
Sbjct: 67 YSHATHFNHNPKSERKLLLQKRELRKLEKEVKNGGLTIIPLRLFINDRGLAKIQITLAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRET K RD R+ RI +E+N
Sbjct: 127 KKLYDKRETIKDRDNKRKLDRIKKEYN 153
>gi|152991971|ref|YP_001357692.1| ssrA RNA-binding protein [Sulfurovum sp. NBC37-1]
gi|166223468|sp|A6Q776|SSRP_SULNB RecName: Full=SsrA-binding protein
gi|151423832|dbj|BAF71335.1| ssrA RNA-binding protein [Sulfurovum sp. NBC37-1]
Length = 153
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 98/149 (65%), Gaps = 1/149 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+V+ N+KAR++Y I+ FEAGIVL+G EVK+LR + N+SD++ F E++L N++I
Sbjct: 4 NIVAQNKKARHDYEILEKFEAGIVLSGAEVKALRAKRANLSDAFCRFIKGELYLMNAHIA 63
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
AN F R RKLLL K+E+ +LY V +DG+T+VP+ IYFN + AK+ +A+A
Sbjct: 64 HLETANKYFTPDTRAPRKLLLHKKELEKLYVKVHKDGLTIVPLMIYFNERNYAKVSIAIA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKR K + DR+ ++ +
Sbjct: 124 KGKKLHDKRADMKAKTLDREAKTAMKNRS 152
>gi|327399336|ref|YP_004340205.1| SsrA-binding protein [Hippea maritima DSM 10411]
gi|327181965|gb|AEA34146.1| SsrA-binding protein [Hippea maritima DSM 10411]
Length = 148
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
NRKAR++Y I+ ++EAG+ L G+EVKS+R+ N+ DSYA +N EIW+ N +I Y
Sbjct: 4 IVNRKARHDYEILETYEAGLELKGSEVKSIRMGSANLKDSYAEIKNGEIWVNNFHISPYK 63
Query: 75 QAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
A+ NH P R +KLLL K +I RL V+ G+TL+P+K+Y G K++LALA+GK
Sbjct: 64 FASAHTNHDPYRKKKLLLHKYQIRRLIGKVKEKGLTLIPLKVYSK-NGKIKMELALAKGK 122
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
K +DKR+ K+RD R+ R L
Sbjct: 123 KLFDKRKDIKERDLTREAERELARF 147
>gi|237741621|ref|ZP_04572102.1| SsrA-binding protein [Fusobacterium sp. 4_1_13]
gi|229429269|gb|EEO39481.1| SsrA-binding protein [Fusobacterium sp. 4_1_13]
Length = 148
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 95/147 (64%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVGIKESFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G
Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R + +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKSNN 147
>gi|330444457|ref|YP_004377443.1| SsrA-binding protein [Chlamydophila pecorum E58]
gi|328807567|gb|AEB41740.1| SsrA-binding protein [Chlamydophila pecorum E58]
Length = 150
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + NRKA +NY ++ + EAGI+LTGTE+KSLR N+ D+Y + E WL N+ I
Sbjct: 3 SKDIVSNRKALHNYEVLDTLEAGIILTGTEIKSLRDHGGNLGDAYVSISRGEAWLLNASI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + EI +L + V + G++L+P+ ++F+ +G K+ L
Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYEIRKLESRVSQKGISLIPLGMFFS-RGYVKVRLGCC 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR+ R+ +R+ ++ +
Sbjct: 122 RGKKAYDKRQALITREKEREIAAAMKRY 149
>gi|313681630|ref|YP_004059368.1| ssra-binding protein [Sulfuricurvum kujiense DSM 16994]
gi|313154490|gb|ADR33168.1| SsrA-binding protein [Sulfuricurvum kujiense DSM 16994]
Length = 150
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 93/144 (64%), Gaps = 1/144 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y+I FEAG+VL G+EVKSLR +VN+ D + E ++ +I
Sbjct: 5 IATNKKAFFDYYIEEKFEAGLVLKGSEVKSLRAGRVNLKDGFIKIVRGEAFVFGVHIGVL 64
Query: 74 LQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+RF + R +RKLLL K++I +++ AV ++G TLVP+ IYFN + +AK+ +A+ +G
Sbjct: 65 DTTHRFYAHEERGSRKLLLHKKQIDKMFKAVEKEGFTLVPLSIYFNDRNIAKMQVAIVKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK YDKR+ K++ R R L+
Sbjct: 125 KKLYDKRDDLKEKSIKRDIERALK 148
>gi|242310637|ref|ZP_04809792.1| SsrA-binding protein [Helicobacter pullorum MIT 98-5489]
gi|239523035|gb|EEQ62901.1| SsrA-binding protein [Helicobacter pullorum MIT 98-5489]
Length = 152
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA Y++ I+ +EAGI L G+EVKS+R +VN+ DS+ N E +L ++I
Sbjct: 2 KIIATNKKALYDFFILEKYEAGIELVGSEVKSIRAGRVNLKDSFVKIVNGEAFLFQAHIS 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
N + +R RKLLL ++EI +L+ + GM++V +K+YFN + AK+++ALA
Sbjct: 62 VLDTTNRYYKPDEKRPRKLLLHRKEIDKLFGKSQVGGMSIVALKLYFNKRNKAKLEIALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRE+ K++ +R+ + L+E
Sbjct: 122 KGKNLHDKRESLKEKIQNREIAQTLKEF 149
>gi|86143245|ref|ZP_01061647.1| SsrA-binding protein [Leeuwenhoekiella blandensis MED217]
gi|85830150|gb|EAQ48610.1| SsrA-binding protein [Leeuwenhoekiella blandensis MED217]
Length = 154
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 64/147 (43%), Positives = 105/147 (71%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N+KAR+ Y ++ + AGI L GTE+KS+R K +I++S+ F+++E+++ N I E
Sbjct: 7 INIKNKKARFEYELLDKYTAGIKLAGTEIKSIREGKASIAESFCEFQDNELFVINMTIQE 66
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A FNH P+ +RKLLL++RE+++L+ VR G+T+VP++++ N +GLAK+ +ALA+G
Sbjct: 67 YSHATYFNHNPKNSRKLLLNRRELNKLHKEVRNSGLTIVPLRLFINDRGLAKMQIALAKG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE K+RD ++ +I + N
Sbjct: 127 KKLYDKREAIKERDSKKRLGQIKKAFN 153
>gi|163755470|ref|ZP_02162589.1| SsrA-binding protein [Kordia algicida OT-1]
gi|161324383|gb|EDP95713.1| SsrA-binding protein [Kordia algicida OT-1]
Length = 152
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69
K + N+KAR+ Y I+ + AGIVLTGTE+KS+R+SK +I++S+ F E E+++ N Y
Sbjct: 3 KNINIQNKKARFQYEILDKYTAGIVLTGTEIKSIRLSKASIAESFCEFNERGELFVVNMY 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY +NH PR RKLLL+K+E+ L V+ G+T+VP++++ N +GLAK+ +AL
Sbjct: 63 IEEYAFGTHYNHKPRSTRKLLLNKKELRSLNKQVKNSGLTIVPLRLFLNDRGLAKLSIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRET K RD R RI +
Sbjct: 123 VKGKKIHDKRETIKDRDNKRNLDRIKKSF 151
>gi|973172|gb|AAC44080.1| orf1; hypothetical protein, similar to Escherichia coli SmpB, small
major protein B, Swiss-Prot Accession Number P32052, and
to Streptococcus faecalis ATPase A, encoded by GenBank
Accession Number M90060 [Neisseria meningitidis]
Length = 148
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA +++ I EAG+VL G EVK++R + + +SY ++ D +L +I
Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAALSMLKESYMYWKKDAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ R LL++ EI++L R G T VP+ F+ +G K+++ LA+G
Sbjct: 63 PTASTHIKPDAVRRASFLLNQSEINKLNGKTERAGYTTVPLGFAFS-RGKIKMEIGLAKG 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR++ K+ DW R+K R+++
Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146
>gi|269303212|gb|ACZ33312.1| SsrA-binding protein [Chlamydophila pneumoniae LPCoLN]
Length = 165
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I
Sbjct: 17 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 76
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + E+ +L + + GMTL+P+ ++ + +G K+ L
Sbjct: 77 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMFLS-RGYVKVRLGCC 135
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDK T +R+ +R+ ++
Sbjct: 136 RGKKTYDKHRTIIEREKEREVAAAMKRR 163
>gi|29840208|ref|NP_829314.1| SsrA-binding protein [Chlamydophila caviae GPIC]
gi|33301622|sp|Q823G4|SSRP_CHLCV RecName: Full=SsrA-binding protein
gi|29834556|gb|AAP05192.1| SsrA-binding protein [Chlamydophila caviae GPIC]
Length = 150
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K + NRKA NY ++ + EAG+VLTGTE+KSLR N+ D+Y E WL N+
Sbjct: 2 SSKEIVSNRKALRNYEVLDTLEAGVVLTGTEIKSLRDHGGNLGDAYVAISKGEAWLLNAS 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N +NH RR RKLLL + EI +L V + G+T++P+ ++ + +G KI L
Sbjct: 62 IAPYRFGNIYNHEERRKRKLLLHRYEIRKLEGRVAQKGITIIPLGMFLS-RGYVKIRLGC 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR+T R+ R+ ++ +
Sbjct: 121 CRGKKAHDKRQTIIAREKQREVESAMKRY 149
>gi|149194859|ref|ZP_01871953.1| SsrA-binding protein [Caminibacter mediatlanticus TB-2]
gi|149135018|gb|EDM23500.1| SsrA-binding protein [Caminibacter mediatlanticus TB-2]
Length = 151
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+V+ NRKA ++Y I +EAGI L G+EVK+LR + N+ DS+ ++ E W +I
Sbjct: 2 KIVATNRKAYHDYDIFDKYEAGIELKGSEVKALRAGRANLKDSFVKIKDGEAWWVQGHIS 61
Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
F H +R RKLLL K EI +L G TLVP KIYFN K AK+++A+A
Sbjct: 62 NLDTTYSAFRHDEKRPRKLLLHKSEIAKLAGYTSERGYTLVPTKIYFNNKNKAKLEIAVA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR K+++ ++ ++ +
Sbjct: 122 KGRKLHDKRRVMKEKELKKEAAAAMKRY 149
>gi|260435686|ref|ZP_05789656.1| SsrA-binding protein [Synechococcus sp. WH 8109]
gi|260413560|gb|EEX06856.1| SsrA-binding protein [Synechococcus sp. WH 8109]
Length = 166
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I
Sbjct: 20 RMLADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79
Query: 72 EYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ A + FNH P R RKLL + EI++L V + G+TL+P+ I+ K+ + L
Sbjct: 80 PHTHAGSYFNHDPLRTRKLLAHRHEINKLRGLVDQKGLTLIPLNIHLKGS-WIKLTIGLG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR EK++ + + +
Sbjct: 139 KGRKLHDKRAAEKEKQSKKDVKAAMERY 166
>gi|282889707|ref|ZP_06298246.1| hypothetical protein pah_c004o053 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500281|gb|EFB42561.1| hypothetical protein pah_c004o053 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 152
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ NR+A +NY I+++FE GIVL GTE+KSLR + ++ ++Y ++EIWL I Y
Sbjct: 8 LVSNRRATFNYEILQTFETGIVLLGTEIKSLRDNGGSLQEAYVKIFDNEIWLIGCNIAPY 67
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
N NH RR RKLL+ KREI RL A G+TL+P+ + G K+ +A A+GK
Sbjct: 68 RYGNVHNHEERRQRKLLMHKREILRLKEATHEKGLTLIPLAFFLK-NGRVKVRIATAKGK 126
Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157
KN DKR++ ++++ R+ R L+
Sbjct: 127 KNVDKRDSIREKEDTRKIQRALKN 150
>gi|27363840|ref|NP_759368.1| SsrA-binding protein [Vibrio vulnificus CMCP6]
gi|37679002|ref|NP_933611.1| SsrA-binding protein [Vibrio vulnificus YJ016]
gi|320157244|ref|YP_004189623.1| tmRNA-binding protein SmpB [Vibrio vulnificus MO6-24/O]
gi|29611854|sp|Q8DF53|SSRP_VIBVU RecName: Full=SsrA-binding protein
gi|39932257|sp|Q7MN99|SSRP_VIBVY RecName: Full=SsrA-binding protein
gi|27359957|gb|AAO08895.1| SsrA-binding protein [Vibrio vulnificus CMCP6]
gi|37197744|dbj|BAC93582.1| small protein B [Vibrio vulnificus YJ016]
gi|319932556|gb|ADV87420.1| tmRNA-binding protein SmpB [Vibrio vulnificus MO6-24/O]
Length = 161
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K S+ ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY
Sbjct: 1 MAKKNSKPKAGSNTIALNKKARHEYFIEDEIEAGMELQGWEVKALRQGKANISESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y+
Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYW- 119
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
A+ KI + +A+GKK +DKR+ K RDW RQK R+++
Sbjct: 120 ARSWVKIKIGVAKGKKLHDKRDDIKDRDWQRQKARVMK 157
>gi|163783612|ref|ZP_02178601.1| SsrA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
gi|159881105|gb|EDP74620.1| SsrA-binding protein [Hydrogenivirga sp. 128-5-R1-1]
Length = 158
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFE 59
M+ + P ++DNR+AR Y I+ +EAG+VL G EVKSLR V+ DS+ +
Sbjct: 1 MAKANNKVIP---IADNREARAKYEILEKYEAGLVLEGPEVKSLRNKGNVSFKDSFVRID 57
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+ E WL N YI Y A P R RKLLL KREI +L + G T++P+++Y+
Sbjct: 58 DGEAWLYNLYIAPYRFATIKPPDPLRKRKLLLHKREIMKLMGKSQEKGYTIIPLRLYWK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
G K+++ALA+GKK +D+R+ K+R R+ R +
Sbjct: 117 NGKVKVEIALARGKKLHDRRQELKERAMKRELEREFK 153
>gi|237740437|ref|ZP_04570918.1| SsrA-binding protein [Fusobacterium sp. 2_1_31]
gi|294782478|ref|ZP_06747804.1| SsrA-binding protein [Fusobacterium sp. 1_1_41FAA]
gi|229422454|gb|EEO37501.1| SsrA-binding protein [Fusobacterium sp. 2_1_31]
gi|294481119|gb|EFG28894.1| SsrA-binding protein [Fusobacterium sp. 1_1_41FAA]
Length = 148
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG K+ +A+A+G
Sbjct: 62 WEYGSIYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKVQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R ++ +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKRDIKINN 147
>gi|259501076|ref|ZP_05743978.1| SsrA-binding protein [Lactobacillus iners DSM 13335]
gi|302190475|ref|ZP_07266729.1| SsrA-binding protein [Lactobacillus iners AB-1]
gi|309803838|ref|ZP_07697923.1| SsrA-binding protein [Lactobacillus iners LactinV 11V1-d]
gi|309808863|ref|ZP_07702744.1| SsrA-binding protein [Lactobacillus iners LactinV 01V1-a]
gi|309809360|ref|ZP_07703222.1| SsrA-binding protein [Lactobacillus iners SPIN 2503V10-D]
gi|312870808|ref|ZP_07730914.1| SsrA-binding protein [Lactobacillus iners LEAF 3008A-a]
gi|312873161|ref|ZP_07733220.1| SsrA-binding protein [Lactobacillus iners LEAF 2062A-h1]
gi|312874379|ref|ZP_07734410.1| SsrA-binding protein [Lactobacillus iners LEAF 2052A-d]
gi|312875086|ref|ZP_07735103.1| SsrA-binding protein [Lactobacillus iners LEAF 2053A-b]
gi|315653864|ref|ZP_07906780.1| SsrA-binding protein [Lactobacillus iners ATCC 55195]
gi|325911451|ref|ZP_08173863.1| SsrA-binding protein [Lactobacillus iners UPII 143-D]
gi|325913343|ref|ZP_08175711.1| SsrA-binding protein [Lactobacillus iners UPII 60-B]
gi|329920441|ref|ZP_08277173.1| SsrA-binding protein [Lactobacillus iners SPIN 1401G]
gi|259167770|gb|EEW52265.1| SsrA-binding protein [Lactobacillus iners DSM 13335]
gi|308164072|gb|EFO66334.1| SsrA-binding protein [Lactobacillus iners LactinV 11V1-d]
gi|308167861|gb|EFO69998.1| SsrA-binding protein [Lactobacillus iners LactinV 01V1-a]
gi|308170271|gb|EFO72302.1| SsrA-binding protein [Lactobacillus iners SPIN 2503V10-D]
gi|311089376|gb|EFQ47803.1| SsrA-binding protein [Lactobacillus iners LEAF 2053A-b]
gi|311090145|gb|EFQ48558.1| SsrA-binding protein [Lactobacillus iners LEAF 2052A-d]
gi|311091394|gb|EFQ49779.1| SsrA-binding protein [Lactobacillus iners LEAF 2062A-h1]
gi|311093684|gb|EFQ52022.1| SsrA-binding protein [Lactobacillus iners LEAF 3008A-a]
gi|315488560|gb|EFU78206.1| SsrA-binding protein [Lactobacillus iners ATCC 55195]
gi|325476801|gb|EGC79955.1| SsrA-binding protein [Lactobacillus iners UPII 143-D]
gi|325477446|gb|EGC80590.1| SsrA-binding protein [Lactobacillus iners UPII 60-B]
gi|328936117|gb|EGG32570.1| SsrA-binding protein [Lactobacillus iners SPIN 1401G]
Length = 152
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + N ++ N+KA Y+Y I +FEAGI LTGTE+KS+R ++N+ D Y
Sbjct: 1 MKKKENDA---LATNKKASYDYFIKETFEAGIALTGTEIKSVRARRINLKDGYVQTYRGS 57
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+L N +I EY Q N +NH P R+R+LLL K+EI+ L + GMT++P+K+Y G
Sbjct: 58 AFLENVHISEYKQGNIYNHDPLRSRRLLLHKKEINHLQIIQAQQGMTIIPLKVYLK-HGY 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + + QGKK YDKRET K+RD DR+ +
Sbjct: 117 AKVLIGVGQGKKQYDKRETIKRRDQDRELKSKYKIR 152
>gi|33862428|ref|NP_893988.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9313]
gi|39932300|sp|Q7V911|SSRP_PROMM RecName: Full=SsrA-binding protein
gi|33640541|emb|CAE20330.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9313]
Length = 165
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + E+ L N +I +
Sbjct: 23 DNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPHSH 82
Query: 76 A-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
A + FNH P R RKLL +REI +L + R G+TL+P+ ++ K+ + L +G+K
Sbjct: 83 AGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGS-WIKLTIGLGKGRK 141
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR+ EK++ DR+ L +
Sbjct: 142 LHDKRQDEKRKQADREVKSALARY 165
>gi|15618257|ref|NP_224542.1| SsrA-binding protein [Chlamydophila pneumoniae CWL029]
gi|15835872|ref|NP_300396.1| SsrA-binding protein [Chlamydophila pneumoniae J138]
gi|6685962|sp|Q9Z8K1|SSRP_CHLPN RecName: Full=SsrA-binding protein
gi|4376616|gb|AAD18486.1| Small Protein B [Chlamydophila pneumoniae CWL029]
gi|8978711|dbj|BAA98547.1| small protein B [Chlamydophila pneumoniae J138]
Length = 151
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I
Sbjct: 3 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y N +NH RR RKLLL + E+ +L + + GMTL+P+ ++ + +G K+ L
Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMFLS-RGYVKVRLGCC 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR T +R+ +R+ ++
Sbjct: 122 RGKKAYDKRRTIIEREKEREVAAAMKRR 149
>gi|118474780|ref|YP_891887.1| SsrA-binding protein [Campylobacter fetus subsp. fetus 82-40]
gi|187611474|sp|A0RNV4|SSRP_CAMFF RecName: Full=SsrA-binding protein
gi|118414006|gb|ABK82426.1| SsrA-binding protein [Campylobacter fetus subsp. fetus 82-40]
Length = 151
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K ++ N+KA ++Y I+ +FEAGI L G+EVK+LR + N+ DS+ E++L N++I
Sbjct: 2 SKDLARNKKAFHDYAILETFEAGIALKGSEVKALRAGRANLKDSFVRIIRGELFLLNAHI 61
Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
N F R RKLL+ +R+I +L+ V DG+T+V + +Y N+K + K ++AL
Sbjct: 62 SYLDTTNSYFRPDERAPRKLLMHRRQIDKLFGKVSTDGLTMVALSLYLNSKNIVKANIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GK +DKRE K+++ + + L+++
Sbjct: 122 AKGKNLHDKREALKQKEANIEARSALKKY 150
>gi|78211669|ref|YP_380448.1| SsrA-binding protein [Synechococcus sp. CC9605]
gi|123578998|sp|Q3AND9|SSRP_SYNSC RecName: Full=SsrA-binding protein
gi|78196128|gb|ABB33893.1| SsrA-binding protein [Synechococcus sp. CC9605]
Length = 166
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I
Sbjct: 20 RMLADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79
Query: 72 EYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ A N FNH P R RKLL +REI + V + G+TL+P+ + K+ + L
Sbjct: 80 PHTHAGNYFNHDPLRTRKLLAHRREIDKFRGLVDQKGLTLIPLSLQLKGS-WIKLTIGLG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR EK++ + + +
Sbjct: 139 KGRKLHDKRAAEKEKQSKKDVKAAMERY 166
>gi|260494524|ref|ZP_05814654.1| SsrA-binding protein [Fusobacterium sp. 3_1_33]
gi|260197686|gb|EEW95203.1| SsrA-binding protein [Fusobacterium sp. 3_1_33]
Length = 148
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAEKVSIKESFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G
Sbjct: 62 WDFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK YDKRE+ K+D +R R + +N
Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKNNN 147
>gi|237751952|ref|ZP_04582432.1| SsrA-binding protein [Helicobacter winghamensis ATCC BAA-430]
gi|229376519|gb|EEO26610.1| SsrA-binding protein [Helicobacter winghamensis ATCC BAA-430]
Length = 153
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 97/147 (65%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA +++ I+ FEAGI L G+EVK++R KVN+ DS+ N E +L ++I
Sbjct: 2 KIIATNKKATFDFFILDKFEAGIALQGSEVKAIRAGKVNLKDSFVKIVNGEAFLFQAHIA 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
N + +R RKLLL K+EI +L+ + GM++V +K+YFNA+ AK+++ALA
Sbjct: 62 TLATTNLHYKPDEKRPRKLLLHKKEIDKLFGKSQVAGMSIVALKLYFNARNKAKLEIALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157
+GK +DKRE+ K++ R+ + L+E
Sbjct: 122 KGKNLHDKRESLKEKIQKREIAQSLKE 148
>gi|312143214|ref|YP_003994660.1| SsrA-binding protein [Halanaerobium sp. 'sapolanicus']
gi|311903865|gb|ADQ14306.1| SsrA-binding protein [Halanaerobium sp. 'sapolanicus']
Length = 160
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + ++V+ N+KA+++++I +EAGI L GTE+KS+R +VN+ DS+A E
Sbjct: 1 MAKK---DEDIEIVARNKKAKHDFYIEEVYEAGIKLQGTEIKSIRNHRVNLKDSFALVEG 57
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N +I Y + NRFNH P R RKLLL K +I +L + G TLVP+ IY K
Sbjct: 58 GEVYLHNMHISPYKEGNRFNHEPERKRKLLLHKSQIRKLIGYTTQKGYTLVPLTIYLR-K 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K++LA+A+GK+ +DKR K R+ +
Sbjct: 117 NLCKVELAVAKGKQKHDKRRDIAKETAKREMEKAFNRR 154
>gi|218962043|ref|YP_001741818.1| SsrA-binding protein [Candidatus Cloacamonas acidaminovorans]
gi|167730700|emb|CAO81612.1| SsrA-binding protein [Candidatus Cloacamonas acidaminovorans]
Length = 142
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 70/138 (50%), Positives = 93/138 (67%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
NR+A ++Y I+++ EAGI L GTE+KS+R KVN DSYA E+ E WL N +I +
Sbjct: 4 IKNRRAEHDYFIIQTLEAGIALKGTEIKSIRAGKVNFKDSYAKIEDGECWLHNLHISPWE 63
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+A FNH R RKLLL K EI RL V GMTL+P++++ N +GL KI LALA+GKK
Sbjct: 64 KAAYFNHEAERKRKLLLHKHEIRRLKTKVEEQGMTLIPLELFINDEGLCKITLALAKGKK 123
Query: 135 NYDKRETEKKRDWDRQKH 152
YDKRE +K+D +R +
Sbjct: 124 AYDKREVMRKKDLERDQE 141
>gi|257460423|ref|ZP_05625524.1| SsrA-binding protein [Campylobacter gracilis RM3268]
gi|257441754|gb|EEV16896.1| SsrA-binding protein [Campylobacter gracilis RM3268]
Length = 154
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K +S NRKA +++ I+ SFEAGIVL G+EVK+LR + N+ DS+ E++L N++I
Sbjct: 2 KELSKNRKAFHDFTILESFEAGIVLKGSEVKALRAGRGNLKDSFCRVIRGELFLLNAHIS 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
N F RKLL+ +++I +L AV ++G+T+V + +Y N K K +ALA
Sbjct: 62 YLESTNAHFRPDEGAARKLLMHRKQIDKLLGAVSKEGLTIVVLSLYLNDKNRVKARIALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GK +DKRE+ K+++ DR+ ++ ++
Sbjct: 122 KGKNLHDKRESLKRKEADREAQSAMKRYD 150
>gi|94969023|ref|YP_591071.1| SsrA-binding protein [Candidatus Koribacter versatilis Ellin345]
gi|187611491|sp|Q1IQ53|SSRP_ACIBL RecName: Full=SsrA-binding protein
gi|94551073|gb|ABF40997.1| SsrA-binding protein [Candidatus Koribacter versatilis Ellin345]
Length = 175
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 101/158 (63%), Gaps = 4/158 (2%)
Query: 3 LKSRGNP---PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
++ +P ++ S NR A +NY ++ +EAG+ L GTEVKS+R + N+ D+Y +
Sbjct: 15 KNAKRDPVASGERDASVNRAASHNYFLLDKYEAGVALRGTEVKSIRDGRANLKDAYGLVK 74
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E+WL N++I Y A+ NH P R RKLL+ KREI +L AA ++ G TL+P ++YF
Sbjct: 75 ENELWLINAHIGPYDAASYNNHAPLRTRKLLVKKREILKLLAASQQKGHTLIPTRMYFK- 133
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K++LA+A+GK+ +DKRET++++ DR +
Sbjct: 134 NGRVKVELAVAKGKQLWDKRETDRRKTADRDAREAIAR 171
>gi|162450572|ref|YP_001612939.1| SmpB-like protein [Sorangium cellulosum 'So ce 56']
gi|187629773|sp|A9G109|SSRP_SORC5 RecName: Full=SsrA-binding protein
gi|161161154|emb|CAN92459.1| SmpB-like protein [Sorangium cellulosum 'So ce 56']
Length = 162
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 64/149 (42%), Positives = 99/149 (66%), Gaps = 2/149 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
K + P + +++ N++A +NY + FEAGIVL G+EVK LR K +++DS+ T E+
Sbjct: 3 KEKARPGETLIARNKRAGFNYDLGDRFEAGIVLKGSEVKMLRAGKADLTDSFCTVLRGEV 62
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
+L I A F H P+ RKLLL +REI R+ ++ R+GMT V ++YF + GLA
Sbjct: 63 FLHGVSIAAMASAA-FGHVPKGARKLLLHRREIERIDLSIAREGMTAVATRLYFKS-GLA 120
Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKH 152
K+++ALA+GKK++DKRET K++D +R+
Sbjct: 121 KVEIALARGKKSHDKRETIKEQDAEREMR 149
>gi|299138918|ref|ZP_07032095.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX8]
gi|298599072|gb|EFI55233.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX8]
Length = 179
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
++ + NR A +NY + EAG+ L GTEVKS+R K N+ D+Y ++ E +L N++
Sbjct: 29 GQRDAAFNRSASFNYFLSDRVEAGVALRGTEVKSIREGKANLKDAYGLLKDGECFLLNAH 88
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I + N NH R RKLLL KREI +L AA ++ G TL+P+K+YF G K +LAL
Sbjct: 89 IGPFSHGNNMNHESLRTRKLLLHKREIEKLEAATKQKGYTLIPVKLYFK-NGRVKCELAL 147
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GK+++DKR TE+ R+ D++ +
Sbjct: 148 AKGKQDWDKRATERAREGDKEAKAAIAR 175
>gi|160901850|ref|YP_001567431.1| SsrA-binding protein [Petrotoga mobilis SJ95]
gi|187629767|sp|A9BF44|SSRP_PETMO RecName: Full=SsrA-binding protein
gi|160359494|gb|ABX31108.1| SsrA-binding protein [Petrotoga mobilis SJ95]
Length = 150
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 100/147 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA ++Y I+ +FEAGI L GTEVKS + K+N DS+ E E+ L N +I
Sbjct: 3 TLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHISP 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A+ FNH P R RKLLL K+EI RL + V+++G+T++P++IY N KGL K+ +ALA+G
Sbjct: 63 YSGASIFNHDPERPRKLLLHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALAKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K YDKRE +++++R+ + + N
Sbjct: 123 LKKYDKREKIAEKEYERRIRKQQKYEN 149
>gi|320539194|ref|ZP_08038865.1| trans-translation protein [Serratia symbiotica str. Tucson]
gi|320030832|gb|EFW12840.1| trans-translation protein [Serratia symbiotica str. Tucson]
Length = 160
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K P ++ N++A + Y I EAG+ L G EVKSLR K N+ DSY TF +
Sbjct: 1 MIKKKAHKPGSATIAQNKRACFEYFIEEEIEAGLSLQGWEVKSLRAGKANLCDSYVTFRD 60
Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + + ++ P R RKLLL+KRE+ L V R+G T+V + +Y+
Sbjct: 61 GEAYLFGATLTPLSVASSHVVCDPIRTRKLLLNKRELDSLIGRVNREGYTVVALSMYWK- 119
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ + +A+GKK +DKR+ K R+W + K RI++ N
Sbjct: 120 NAWCKVKIGIAKGKKEHDKRDDIKDREWQKAKARIMKHAN 159
>gi|124004412|ref|ZP_01689257.1| SsrA-binding protein [Microscilla marina ATCC 23134]
gi|123989984|gb|EAY29498.1| SsrA-binding protein [Microscilla marina ATCC 23134]
Length = 155
Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 98/143 (68%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K V NRKA ++Y + + AG+VLTGTE+KS+R S+V + D++ F+++E+WL +
Sbjct: 11 SKNVHIKNRKASFDYQFLDKYIAGVVLTGTEIKSIRQSQVVLGDAFCFFKDEELWLKQMH 70
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y +NH P R RKLLL+K+E+ ++ + G+++VP +++ N +GLAKI++A+
Sbjct: 71 IAPYENGTHYNHEPTRERKLLLNKKELKKISKKLAEKGLSVVPTRLFINDRGLAKIEVAV 130
Query: 130 AQGKKNYDKRETEKKRDWDRQKH 152
A+GKK YDKRE+ K+RD R+
Sbjct: 131 ARGKKLYDKRESMKERDSKRELK 153
>gi|256422673|ref|YP_003123326.1| SsrA-binding protein [Chitinophaga pinensis DSM 2588]
gi|256037581|gb|ACU61125.1| SsrA-binding protein [Chitinophaga pinensis DSM 2588]
Length = 145
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 94/141 (66%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
NR A + Y I + AG+VLTGTE+KS+R S+V+ +DS+ F E+++ + +I EY
Sbjct: 5 KNRSAYFEYAIEDKYIAGMVLTGTEIKSIRGSRVSFNDSFCYFSKGELFVKSLHISEYTH 64
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
NH P R RKLLL+KRE+ +L ++ G +++P++I+ K LAKI++ L +GKK
Sbjct: 65 GTYSNHDPLRERKLLLTKRELRKLENKIKERGYSIIPLRIFITDKSLAKIEIGLGKGKKL 124
Query: 136 YDKRETEKKRDWDRQKHRILR 156
+DKR++ K+R+ DR+ R L+
Sbjct: 125 HDKRDSIKQRETDREIRRFLK 145
>gi|146329096|ref|YP_001209881.1| SsrA-binding protein [Dichelobacter nodosus VCS1703A]
gi|166223215|sp|A5EXZ5|SSRP_DICNV RecName: Full=SsrA-binding protein
gi|146232566|gb|ABQ13544.1| SsrA-binding protein [Dichelobacter nodosus VCS1703A]
Length = 159
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 94/159 (59%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K N + N+K ++Y + FEAGI L G EVK++R ++ I +SY ++
Sbjct: 1 MSKK---NTADNHIVTNKKVFHDYFLEEHFEAGIALEGWEVKAVRAGRIQIKESYILVKD 57
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+++L + I ++ +R RKLLL + +I +L A RDG TL+P+ +Y+
Sbjct: 58 QQVYLFGALIHPLASASSHIFPEAQRTRKLLLHRYQIAKLIGASERDGYTLMPVSLYWK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+D+A+A+GKK +DKR+ +K +DW + + RI++ H
Sbjct: 117 NGFVKVDVAIAKGKKEFDKRQVKKDQDWKKTQSRIMKAH 155
>gi|88802973|ref|ZP_01118500.1| SsrA-binding protein [Polaribacter irgensii 23-P]
gi|88781831|gb|EAR13009.1| SsrA-binding protein [Polaribacter irgensii 23-P]
Length = 152
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69
K + N+KAR+ + I+ F AGI LTGTE+KS+R+S+ I++S+ F E E+++ N Y
Sbjct: 4 KNINIQNKKARFEFEILDKFVAGIQLTGTEIKSIRLSQARITESFCEFNEGGELFIVNMY 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY+ ++FNH P+ R+LLL+KRE+ L V G T+VP+K++ N +G AK+++AL
Sbjct: 64 IQEYMFGHQFNHKPKSERRLLLNKRELRSLKRDVEAKGNTIVPLKLFINDRGFAKLEIAL 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GK+ +DKRE K RD R RI +
Sbjct: 124 AKGKQTHDKREVMKDRDNKRDLARIKKNF 152
>gi|52081941|ref|YP_080732.1| SsrA-binding protein [Bacillus licheniformis ATCC 14580]
gi|52787325|ref|YP_093154.1| SsrA-binding protein [Bacillus licheniformis ATCC 14580]
gi|319647803|ref|ZP_08002021.1| SsrA-binding protein [Bacillus sp. BT1B_CT2]
gi|67461368|sp|Q65EQ3|SSRP_BACLD RecName: Full=SsrA-binding protein
gi|52005152|gb|AAU25094.1| tmRNA-binding protein [Bacillus licheniformis ATCC 14580]
gi|52349827|gb|AAU42461.1| SmpB [Bacillus licheniformis ATCC 14580]
gi|317390144|gb|EFV70953.1| SsrA-binding protein [Bacillus sp. BT1B_CT2]
Length = 157
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVVS N+KA ++Y I ++E GIVL GTE+KS+R +VN+ D++A E E++L N +I
Sbjct: 7 KVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFLHNMHIS 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q NR+NH P R RKLL+ +++I++L + G +LVP+KIY G AK+ L L +
Sbjct: 67 PYEQGNRYNHDPLRTRKLLMHRKQINKLIGLTKEQGYSLVPLKIYLK-NGFAKVLLGLGK 125
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKRE K++D R+ R R+
Sbjct: 126 GKKKFDKREDLKRKDAKREIERAFRDR 152
>gi|261886352|ref|ZP_06010391.1| SsrA-binding protein [Campylobacter fetus subsp. venerealis str.
Azul-94]
Length = 151
Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K ++ N+KA ++Y I+ +FEAGI L G+EVK+LR + N+ DS+ E++L N++I
Sbjct: 2 SKDLARNKKAFHDYAILETFEAGIALKGSEVKALRAGRANLKDSFVRIIRGELFLLNAHI 61
Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
N F R RKLL+ +R+I +L+ V DG+T+V + +Y ++K + K ++AL
Sbjct: 62 SYLDTTNSYFRPDERAPRKLLMHRRQIDKLFGKVSPDGLTMVALSLYLSSKNIVKANIAL 121
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GK +DKRE ++++ + + L+++
Sbjct: 122 AKGKNLHDKREALQQKEANIEARSALKKY 150
>gi|110638354|ref|YP_678563.1| SsrA-binding protein [Cytophaga hutchinsonii ATCC 33406]
gi|123058754|sp|Q11TP3|SSRP_CYTH3 RecName: Full=SsrA-binding protein
gi|110281035|gb|ABG59221.1| SsrA-binding protein [Cytophaga hutchinsonii ATCC 33406]
Length = 153
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 100/144 (69%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K V N+KA + Y + +EAGIVL GTE+K++R+SK +IS++Y F+N+E+W+ N I
Sbjct: 8 KNVNIKNKKASFEYEFLEKYEAGIVLKGTEIKAIRMSKASISEAYCLFDNEELWIKNMNI 67
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Y + + +NH P RKLLL K E+ +L+ + G+T++ ++++ N +G AKI++ALA
Sbjct: 68 SSYDKGSFYNHDPLSARKLLLRKAELKKLFMHSKEKGLTIIALRLFTNERGYAKIEIALA 127
Query: 131 QGKKNYDKRETEKKRDWDRQKHRI 154
+GKK YDKRE+ K +D +R+ RI
Sbjct: 128 KGKKLYDKRESIKSKDNEREMQRI 151
>gi|313680026|ref|YP_004057765.1| ssra-binding protein [Oceanithermus profundus DSM 14977]
gi|313152741|gb|ADR36592.1| SsrA-binding protein [Oceanithermus profundus DSM 14977]
Length = 142
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 68/138 (49%), Positives = 102/138 (73%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
+NRKAR++Y I+ ++EAGI L GTEVKS+R KV+ + ++A F+N E+WL + YI Y +
Sbjct: 3 ENRKARHDYEILETYEAGIALKGTEVKSVRAGKVDFTGAFARFDNGELWLEDLYIAPYEK 62
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ NH PRR RKLLL + E+++L V + G+TLVP+KIYFN +G AK+ LALA+GK++
Sbjct: 63 GSYSNHEPRRRRKLLLHRHELNKLRGRVEQKGLTLVPLKIYFNERGYAKVLLALARGKRD 122
Query: 136 YDKRETEKKRDWDRQKHR 153
Y K++ +KKR +R+ +
Sbjct: 123 YQKKQDDKKRAVERELEK 140
>gi|297621407|ref|YP_003709544.1| SsrA-binding protein [Waddlia chondrophila WSU 86-1044]
gi|297376708|gb|ADI38538.1| SsrA-binding protein [Waddlia chondrophila WSU 86-1044]
Length = 160
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 96/156 (61%), Gaps = 3/156 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
++ + + + + NRKAR++Y I+ ++EAGI LTGTEVKSLR + ++ ++Y +
Sbjct: 4 AMGKKSSSSE--LVSNRKARHSYEILDTYEAGIALTGTEVKSLRDNGGSLQEAYIRVKGG 61
Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
E+WL +I + N NH R RKLL+ K+EI RL AA + G+T+VP+ +Y G
Sbjct: 62 ELWLLKCHIAPWKYGNIHNHEETRERKLLMHKKEIQRLKAATQEKGLTIVPLALYLK-NG 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ LA A+GK DKR++ K++D R+ + ++
Sbjct: 121 KIKVSLAAAKGKTGLDKRKSLKEKDEKRRMQQAMKR 156
>gi|212551007|ref|YP_002309324.1| SsrA-binding protein [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
gi|212549245|dbj|BAG83913.1| SsrA-binding protein [Candidatus Azobacteroides pseudotrichonymphae
genomovar. CFP2]
Length = 153
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 98/148 (66%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K +V N+KA +NY + +F AGI+LTGTE+KS+R+ K ++ DSY + +W+ N Y
Sbjct: 4 SKNIVIKNKKASFNYEFIETFIAGIILTGTEIKSIRLGKASLVDSYCLIIKNALWIRNMY 63
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY NH R++RKLLL + E+ R+ ++ G T++P K++ N KGLAK+ + +
Sbjct: 64 IAEYFYGTYNNHEMRKDRKLLLIRGELKRIEQFTKKTGFTIIPTKLFINEKGLAKLCITI 123
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GKK YDKR++ ++RD R ++L++
Sbjct: 124 ARGKKIYDKRQSLRERDDKRSMDKVLKK 151
>gi|332091935|gb|EGI97013.1| ssrA-binding protein [Shigella boydii 3594-74]
Length = 154
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 2/135 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY +
Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+
Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119
Query: 120 KGLAKIDLALAQGKK 134
K+ + +A+GK
Sbjct: 120 NAWCKVKIGVAKGKN 134
>gi|325971239|ref|YP_004247430.1| SsrA-binding protein [Spirochaeta sp. Buddy]
gi|324026477|gb|ADY13236.1| SsrA-binding protein [Spirochaeta sp. Buddy]
Length = 156
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 61/153 (39%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ K + N+KA +NY ++ E GI L GTEVKSLR K + +DSY T + +
Sbjct: 2 KQDKNVFKPLQKNKKAYFNYEVIEDLECGIALVGTEVKSLREGKFSFADSYVTVTDRTLT 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L I Y N NH P RNR+LL K EI RL V G TLVP IY L K
Sbjct: 62 LVGLTIQPYTHGNIHNHDPNRNRRLLAHKSEIKRLKRRVIEKGFTLVPTSIYLRGN-LVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ ++L +GK+ +DKR K+RD +R R +++
Sbjct: 121 VQVSLCRGKQLHDKRAATKERDMNRDMRREVKQ 153
>gi|318042850|ref|ZP_07974806.1| SsrA-binding protein [Synechococcus sp. CB0101]
Length = 165
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
S K+ + K+++DNR AR+ Y I+ + E G+ L GTEVKS+R +VN+ D + N
Sbjct: 9 SAKALRDAANKLLADNRFARHQYEILETLECGVELLGTEVKSIRAGQVNLRDGFCLIRNG 68
Query: 62 EIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
++ L N +I + A FNH P R R LL +REI +L A+ + G+TL+P+ ++
Sbjct: 69 QLQLHNVHISPHSHAGAYFNHDPLRVRPLLAHRREIDKLRVALDQKGLTLIPLNLHLKGS 128
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K + L +G+K +DKR+ E+++ + +
Sbjct: 129 -WIKATIGLGKGRKLHDKRQEERRKQDIKDAKAAIARF 165
>gi|225850159|ref|YP_002730393.1| SsrA-binding protein [Persephonella marina EX-H1]
gi|254778374|sp|C0QUM8|SSRP_PERMH RecName: Full=SsrA-binding protein
gi|225645872|gb|ACO04058.1| SsrA-binding protein [Persephonella marina EX-H1]
Length = 152
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
KVV+ N+ A +NY+I+ ++EAGIVL G+EVKS+R VN+ DS+ +N E ++ N Y
Sbjct: 2 GIKVVATNKVAYHNYNIIETYEAGIVLKGSEVKSIREGSVNLRDSFVRIDNGEAFIYNMY 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y A++ H P R RKLLL KREI +L V+ G+T++P K+Y G KI++AL
Sbjct: 62 IAPYKPASKLQHDPYRKRKLLLHKREILKLMGKVQEKGLTIIPTKVYLK-NGKVKIEIAL 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156
A+GK Y+KRE K+RD R+ + +
Sbjct: 121 AKGKAKYEKREAIKERDMKRELSKKYK 147
>gi|322435310|ref|YP_004217522.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX9]
gi|321163037|gb|ADW68742.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX9]
Length = 179
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K+ S NR A +NY + +EAG+ L GTEVKS+R K N+ D+Y ++ E +L N++
Sbjct: 29 GKRDASFNRSASFNYFLTDKYEAGVALRGTEVKSIREGKANLKDAYGLLKDGECFLLNAH 88
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I + N NH R RKLLL K EI +L AA R+ G TL+P+++YF G K +LAL
Sbjct: 89 IGPFSHGNAMNHEALRTRKLLLHKLEIRKLEAATRQKGFTLIPVRLYFR-HGRVKCELAL 147
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+GK+ +DKR TE+KR+ D + +
Sbjct: 148 AKGKQEWDKRATERKREADSEAKSAIAR 175
>gi|148241222|ref|YP_001226379.1| SsrA-binding protein [Synechococcus sp. RCC307]
gi|166223469|sp|A5GQ67|SSRP_SYNR3 RecName: Full=SsrA-binding protein
gi|147849532|emb|CAK27026.1| SsrA-binding protein [Synechococcus sp. RCC307]
Length = 166
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
+K+++DNR+AR+ Y I+ + E GI L GTEVK++R K N+ D + ++ L N +I
Sbjct: 19 QKLLADNRQARHQYEILDTLETGIELLGTEVKAIRAGKANLRDGFCLIRQGQLQLHNVHI 78
Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ QA+ FNH P R R+LL +REI +L + G+TL+P+ I+ K+ + L
Sbjct: 79 AGHEQASRYFNHEPLRVRRLLAHRREIDKLRGQLDTKGLTLIPLNIHLKGS-WIKLTIGL 137
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
+G+K +DKR+ E+++ + L+
Sbjct: 138 GKGRKLHDKRQEERRKQDQKDLRSALKR 165
>gi|124021905|ref|YP_001016212.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9303]
gi|187629770|sp|A2C637|SSRP_PROM3 RecName: Full=SsrA-binding protein
gi|123962191|gb|ABM76947.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9303]
Length = 165
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 2/144 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + E+ L N +I +
Sbjct: 23 DNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPHSH 82
Query: 76 A-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
A + FNH P R RKLL +REI +L + R G+TL+P+ ++ K+ + L +G+K
Sbjct: 83 AGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGS-WIKLTIGLGKGRK 141
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR+ EK++ DR+ L +
Sbjct: 142 LHDKRQEEKRKQADREVKSALARY 165
>gi|116620186|ref|YP_822342.1| SsrA-binding protein [Candidatus Solibacter usitatus Ellin6076]
gi|122255465|sp|Q02A69|SSRP_SOLUE RecName: Full=SsrA-binding protein
gi|116223348|gb|ABJ82057.1| SsrA-binding protein [Candidatus Solibacter usitatus Ellin6076]
Length = 156
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + K++SDNR+A +NY + FE G+VLTGTEVK+ + +K+ + D+YA+ DE
Sbjct: 1 MADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
WL N++I +Y NR NH P RNRKLLL +REI +L R G+ L+P KIY G
Sbjct: 61 AWLLNAHISQYSHGNRENHLPVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMK-NGK 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K ++A+A+GKK YDKR +K R D + +R
Sbjct: 120 IKCEIAVAKGKKLYDKRAADKARTADDEARAEMRRR 155
>gi|88658487|ref|YP_506963.1| SsrA-binding protein [Ehrlichia chaffeensis str. Arkansas]
gi|123493900|sp|Q2GHX0|SSRP_EHRCR RecName: Full=SsrA-binding protein
gi|88599944|gb|ABD45413.1| SsrA-binding protein [Ehrlichia chaffeensis str. Arkansas]
Length = 149
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 78/147 (53%), Positives = 110/147 (74%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+V +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I+++Y T N E+WL N +I E
Sbjct: 3 IVVENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAEAYVTERNMELWLCNLHISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y QA+ NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KG+AK+ + + +G
Sbjct: 63 YNQASTRNHNPTRPRKLLLRKKQIYKISGNIKNDGFTVVPLCLYFNDKGIAKVKVVIVKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK +DKRET K RDW+R+K RILR N
Sbjct: 123 KKLHDKRETIKTRDWNREKSRILRGGN 149
>gi|296271997|ref|YP_003654628.1| SsrA-binding protein [Arcobacter nitrofigilis DSM 7299]
gi|296096172|gb|ADG92122.1| SsrA-binding protein [Arcobacter nitrofigilis DSM 7299]
Length = 156
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 98/158 (62%), Gaps = 4/158 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + N+KA ++Y I+ SFEAGI L G+EVKS+R +VN+ DSY
Sbjct: 1 MAKKEK---NINLTFKNKKAYHDYFILESFEAGIELLGSEVKSIREGRVNLKDSYIRIIK 57
Query: 61 DEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+E+++ N +I + + R RKLLL +++I +L+ V +DG+T+VP+K+YFNA
Sbjct: 58 NEVFVLNMHISYLETTHAMYRPEETRPRKLLLHRKQIDKLFEKVTKDGITIVPLKLYFNA 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K AK+ +A AQGKK YDKR K++ R+ + ++
Sbjct: 118 KNFAKLQIATAQGKKLYDKRADLKEKSLKRESEQAIKN 155
>gi|262038912|ref|ZP_06012256.1| SsrA-binding protein [Leptotrichia goodfellowii F0264]
gi|261747077|gb|EEY34572.1| SsrA-binding protein [Leptotrichia goodfellowii F0264]
Length = 148
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ N+KA ++Y I EAGI L GTEVKS++ K +I +S+ +E+++ N +I
Sbjct: 2 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKTSIKESFIRIIKNEVFIMNMHITP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y N N R RKLLL+++EI + + ++ G T++P+ +Y + L K+++ LA+G
Sbjct: 62 YEFGNINNLPESRVRKLLLNRKEIEKWASKIKEQGYTIIPLSVYTKKR-LVKMEIGLAKG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE+ K++D ++ +I +
Sbjct: 121 KKLHDKRESLKRKDQEKDMKKIQKNF 146
>gi|327405349|ref|YP_004346187.1| SsrA-binding protein [Fluviicola taffensis DSM 16823]
gi|327320857|gb|AEA45349.1| SsrA-binding protein [Fluviicola taffensis DSM 16823]
Length = 150
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 93/145 (64%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++AR+ Y + F AG+VL+GTE+KS+R K +I ++Y E+ ++++ N ++
Sbjct: 6 VNIKNKRARFEYQLDEVFTAGMVLSGTEIKSIRNGKASILEAYCIVESGQVFIRNMHVSP 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + +NH R +RKLLL+K+EI +L ++ G T+VP+K++ + KG K+++A G
Sbjct: 66 YENGSFYNHMARSDRKLLLNKKEIKKLEKWLKTKGNTIVPLKLFLSEKGWLKLEMATGVG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK +DKR K +D R+ R +++
Sbjct: 126 KKLHDKRHDLKAKDDRREMDRAMKK 150
>gi|89898368|ref|YP_515478.1| SsrA-binding protein [Chlamydophila felis Fe/C-56]
gi|123483263|sp|Q254F5|SSRP_CHLFF RecName: Full=SsrA-binding protein
gi|89331740|dbj|BAE81333.1| ssrA-binding protein [Chlamydophila felis Fe/C-56]
Length = 150
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K + NRKA NY ++ + +AG+VLTGTE+KSLR N+ D+Y T E WL N+
Sbjct: 2 SSKEIVSNRKALRNYEVLDTVDAGVVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNAS 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y N +NH RR RKLLL + EI +L + V + G+T++P+ ++ + +G KI L
Sbjct: 62 IAPYRFGNIYNHEERRKRKLLLHRYEIQKLESKVSQKGITIIPLGMFLS-RGYVKIRLGC 120
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR+T R+ R+ ++ +
Sbjct: 121 CRGKKAHDKRQTIIAREKQREVESAMKRY 149
>gi|224418153|ref|ZP_03656159.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491]
gi|253827480|ref|ZP_04870365.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491]
gi|313141688|ref|ZP_07803881.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491]
gi|253510886|gb|EES89545.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491]
gi|313130719|gb|EFR48336.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491]
Length = 152
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 96/148 (64%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KVV+ N+KA Y++ I+ +EAGI L G+EVKS+R +VN+ DS+ E +L ++I
Sbjct: 2 KVVATNKKALYDFFILEKYEAGIALEGSEVKSIRAGRVNLKDSFVKIVKGEAFLFQAHIS 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
N + +R RKLLL K+EI +L+ + GM++V +K+YFN + AK+++ALA
Sbjct: 62 ALETTNRHYKPDEKRPRKLLLHKKEIDKLFGKSQVGGMSIVALKLYFNKRNKAKLEIALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET K++ +R+ + L+E
Sbjct: 122 KGKNLHDKRETLKEKIQNREIAQTLKEF 149
>gi|149372296|ref|ZP_01891484.1| SsrA-binding protein [unidentified eubacterium SCB49]
gi|149354686|gb|EDM43249.1| SsrA-binding protein [unidentified eubacterium SCB49]
Length = 155
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSY 69
K V N+KAR+ Y ++ S++AGIVL GTE+K++R K +I++S+ F + E+++ N
Sbjct: 5 KNVKIKNKKARFEYELLDSYDAGIVLAGTEIKAIREGKASIAESFCEFNDRSELFVINMT 64
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ EY A FNH P+ RKLLL++ E+ +L V+ G+T++P +Y N KGLAK+ ++L
Sbjct: 65 VQEYSHATHFNHSPKSERKLLLNRNELKKLEKEVQNSGLTIIPTLLYTNDKGLAKMRISL 124
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GKK YDKRE K RD R R+ + N
Sbjct: 125 ARGKKLYDKRENIKDRDNKRDLSRLKKSFN 154
>gi|322379157|ref|ZP_08053553.1| SsrA-binding protein [Helicobacter suis HS1]
gi|322381053|ref|ZP_08055081.1| SsrA-binding protein [Helicobacter suis HS5]
gi|321146523|gb|EFX41395.1| SsrA-binding protein [Helicobacter suis HS5]
gi|321148420|gb|EFX42924.1| SsrA-binding protein [Helicobacter suis HS1]
Length = 175
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
N+KA ++Y I+ + EAGIVL G+EVK++RV +VN+ D++ E +L ++
Sbjct: 26 IRNKKAFFDYEILETLEAGIVLAGSEVKAIRVGRVNLKDNFVRIIRGEAFLFGVHVGHLP 85
Query: 75 QAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
AN + RR RKLLL K++IH+ V + +++V +++YFNAK K+ +AL +GK
Sbjct: 86 TANVYYKPDERRPRKLLLHKKQIHKWSVEVGQKRLSIVALQLYFNAKNRVKLQIALVKGK 145
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
K YDKRE+ K+R DR+ LR H
Sbjct: 146 KLYDKRESMKQRVLDREAKSQLRNH 170
>gi|255531455|ref|YP_003091827.1| SsrA-binding protein [Pedobacter heparinus DSM 2366]
gi|255344439|gb|ACU03765.1| SsrA-binding protein [Pedobacter heparinus DSM 2366]
Length = 149
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 96/144 (66%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
+ N++A ++YHI+ + AG+ L GTE+K++R K N++D++ F + +++ N +I E
Sbjct: 5 IQIKNKRAYFDYHIIDKYNAGLALLGTEIKAIRQGKANMTDAFCMFIGNILYVRNLHISE 64
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y ++ +H +R+R LLL K+E+ +L G T+VP++I+ N +G AKI++ALAQG
Sbjct: 65 YSHSSFHHHEIKRDRALLLHKKELKKLKVKSEEKGYTIVPLRIFTNERGFAKIEIALAQG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKR++ K R+ R+ R ++
Sbjct: 125 KKEFDKRDSIKDRESKREMDRAMK 148
>gi|330836547|ref|YP_004411188.1| SsrA-binding protein [Spirochaeta coccoides DSM 17374]
gi|329748450|gb|AEC01806.1| SsrA-binding protein [Spirochaeta coccoides DSM 17374]
Length = 157
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ G KV+ NRKA +NY +V E GI LTGTEVKS+R S+ + SDSY + D
Sbjct: 1 MAKFGKDDVKVLQTNRKAYFNYEMVEDLECGIALTGTEVKSVRESRFSFSDSYVKIDPDG 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+ L + I Y N NH R R+LL K+EI + V G TLVP K+Y L
Sbjct: 61 LKLISFTIQPYTHGNIHNHKSDRIRRLLAKKQEIKKWRRKVDEKGFTLVPTKVYLRGN-L 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+ ++LA+GK+ +DKR + K+RD DR R ++ N
Sbjct: 120 IKMQVSLARGKQLHDKRASLKERDMDRDARREMKLSN 156
>gi|223557953|gb|ACM90960.1| SsrA-binding protein [uncultured bacterium URE12]
Length = 163
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 4/161 (2%)
Query: 1 MSLKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
M + + K ++ NRKAR++Y I + EAG+ L G EVKSLR+ I+ ++A
Sbjct: 1 MKKAKKSDEKDKNFEQIATNRKARHDYLIEDTIEAGLALEGPEVKSLRLKHCVITSAFAR 60
Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
E ++L I Y P R RKLLL K EI RL AV GM LV +++YF
Sbjct: 61 VEPRGVYLYGMQISPYAFNTLTQLDPVRTRKLLLKKTEIRRLSRAVEIKGMALVALEVYF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+G AK+ + L +GKK DK+ET KKRD DR+ R +E
Sbjct: 121 K-RGWAKVLIGLGRGKKAADKKETIKKRDIDREMRRDFKEK 160
>gi|238854860|ref|ZP_04645190.1| SsrA-binding protein [Lactobacillus jensenii 269-3]
gi|260664147|ref|ZP_05865000.1| SsrA-binding protein [Lactobacillus jensenii SJ-7A-US]
gi|282933938|ref|ZP_06339286.1| SsrA-binding protein [Lactobacillus jensenii 208-1]
gi|313472362|ref|ZP_07812854.1| SsrA-binding protein [Lactobacillus jensenii 1153]
gi|238832650|gb|EEQ24957.1| SsrA-binding protein [Lactobacillus jensenii 269-3]
gi|239529781|gb|EEQ68782.1| SsrA-binding protein [Lactobacillus jensenii 1153]
gi|260562033|gb|EEX28002.1| SsrA-binding protein [Lactobacillus jensenii SJ-7A-US]
gi|281302027|gb|EFA94281.1| SsrA-binding protein [Lactobacillus jensenii 208-1]
Length = 151
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
V++ N+KA ++Y I + EAGI LTGTE+KS+R ++ + D Y N +L
Sbjct: 2 KKEANNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYLE 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
N +I EY Q N +NH P R R+LLL K+EI +L + GM ++P+K+Y KG AKI
Sbjct: 62 NVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEVQAQQGMAIIPLKVYLK-KGFAKIL 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILR 156
L + QGKK YDKRET KKRD +R+ R R
Sbjct: 121 LGIGQGKKQYDKRETIKKRDQERELRRKYR 150
>gi|332044185|gb|EGI80379.1| SsrA-binding protein [Lacinutrix algicola 5H-3-7-4]
Length = 151
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYIP 71
+ N+KA++ Y I+ + AGIVLTGTE+KS+R SK +I++++ F E +E+++ N I
Sbjct: 5 INILNKKAKFQYEILDKYTAGIVLTGTEIKSIRDSKASIAEAFCEFNEQNELFVINMTIQ 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY+ N +NH P+ RKLLL++RE+ +L V G+T++P++++ N KG AK+ +ALA+
Sbjct: 65 EYVYGNYYNHAPKAERKLLLNRRELKKLEKEVNTSGLTIIPLRLFINDKGYAKLVIALAK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRET K RD R RI +
Sbjct: 125 GKKLYDKRETIKDRDNKRNLDRIKKNF 151
>gi|183220800|ref|YP_001838796.1| SsrA-binding protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
gi|189910900|ref|YP_001962455.1| SsrA-binding protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167775576|gb|ABZ93877.1| ssrA/tmRNA-binding protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Ames)']
gi|167779222|gb|ABZ97520.1| SsrA-binding protein [Leptospira biflexa serovar Patoc strain
'Patoc 1 (Paris)']
Length = 162
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 1/159 (0%)
Query: 1 MSLKSRGNPPKKVVSD-NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M + + P+ N+KA++N+ ++ SFEAG+VLTG+EVKSLR K N++D +A
Sbjct: 1 MGKTKKDDKPRGTDPLINKKAKFNFELLDSFEAGVVLTGSEVKSLREKKGNLTDCFAKVR 60
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E++L N IP Y NH R RKLLL +EI ++ +++ G+ LV + +F
Sbjct: 61 NGEVFLENFQIPPYKNGGYANHPEIRPRKLLLKAKEIEKIDRSIKEKGLVLVATRCFFKN 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L KID+ALA+ KK YDKR+ +K++ R ++EH
Sbjct: 121 NRLVKIDVALAKPKKLYDKRDDIQKKEAKIDMERAMKEH 159
>gi|33862172|ref|NP_893733.1| SsrA-binding protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1986]
gi|39932292|sp|Q7UZP2|SSRP_PROMP RecName: Full=SsrA-binding protein
gi|33634390|emb|CAE20075.1| tmRNA binding protein SmpB [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
Length = 175
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%)
Query: 2 SLKSRGNPPKKVV---------SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNIS 52
++ N K++ S+NR A++ Y I+ + EAGI L GTEVKS+R VN+
Sbjct: 11 AMAKVSNKANKIIKKEAVFKRLSENRYAKFQYEILETIEAGIELLGTEVKSIRNGSVNLR 70
Query: 53 DSYATFENDEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLV 111
D Y +F + EI L N +I + FNH P RNRKLLL K+EI +L + G+T++
Sbjct: 71 DGYCSFRDGEILLLNVHISPHKNVGPFFNHDPLRNRKLLLHKKEIVKLKYNTEKKGLTII 130
Query: 112 PMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
P+ IY K+ + + +GKK +DKR+ +K+RD R+ L+
Sbjct: 131 PLSIYLKGS-WIKLTIGIGKGKKLHDKRQADKQRDIKREIKTALKR 175
>gi|86133403|ref|ZP_01051985.1| SmpB protein [Polaribacter sp. MED152]
gi|85820266|gb|EAQ41413.1| SmpB protein [Polaribacter sp. MED152]
Length = 153
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 67/150 (44%), Positives = 99/150 (66%), Gaps = 1/150 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69
KK+ N+KAR+ + I+ + AGI LTGTE+KS+R S+ I++S+ F E E+++ N Y
Sbjct: 3 KKINIQNKKARFEFEILDKYVAGIQLTGTEIKSIRQSQARITESFCEFNERGELFIVNMY 62
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I EY+ N FNH P+ R+LLL+KRE+ L V G T+VP+K++ N +G AK+++AL
Sbjct: 63 IKEYMYGNHFNHKPKSERRLLLNKRELKSLKKDVEAKGNTIVPLKLFINDRGFAKLEIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159
A+GK+ +DKR K RD R RI + N
Sbjct: 123 AKGKQTHDKRNVIKDRDNKRDLARIKKSFN 152
>gi|253575476|ref|ZP_04852813.1| SsrA-binding protein [Paenibacillus sp. oral taxon 786 str. D14]
gi|251845123|gb|EES73134.1| SsrA-binding protein [Paenibacillus sp. oral taxon 786 str. D14]
Length = 161
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 104/159 (65%), Gaps = 4/159 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M++ + KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R +VNI D++AT N
Sbjct: 1 MNMGKKSE--GKVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRVNIGDAFATIRN 58
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EI++ N +I + Q NRFN P R RKLL+ K +I++L +++G T+VP+KIY
Sbjct: 59 GEIFIHNMHISPFEQGNRFNPADPTRTRKLLMHKAQINKLLGLSKQEGYTIVPLKIYIR- 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GKK YDKR+ KRD R R LRE
Sbjct: 118 NGYAKLLLGLGKGKKQYDKRDAAAKRDAQRDIQRALREK 156
>gi|212696116|ref|ZP_03304244.1| hypothetical protein ANHYDRO_00652 [Anaerococcus hydrogenalis DSM
7454]
gi|325846524|ref|ZP_08169439.1| SsrA-binding protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|212676745|gb|EEB36352.1| hypothetical protein ANHYDRO_00652 [Anaerococcus hydrogenalis DSM
7454]
gi|325481282|gb|EGC84323.1| SsrA-binding protein [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 147
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/147 (44%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KAR++Y + +EAGI L G EVKS+R KV+I +S+ E+++ N +
Sbjct: 2 KILANNKKARHDYFLEEKYEAGIELKGNEVKSIREGKVSIKESHVGDYKGELFIYNMNVT 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q+ N P R RKLLL K+EI +L V + G T++ KIY GL K ++ALA+
Sbjct: 62 PYKQSYEKNIDPIRTRKLLLHKKEIDKLIGKVSQAGYTMIVNKIYLKE-GLIKAEIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKNYDKRET KK D R+ R L+ +
Sbjct: 121 GKKNYDKRETIKKNDAKRKIERALKNY 147
>gi|188586604|ref|YP_001918149.1| SsrA-binding protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351291|gb|ACB85561.1| SsrA-binding protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 154
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V++ NRKA + + I +EAGI L GTEVKS + VN+ D +A E EI+L N +I
Sbjct: 7 VLARNRKAEHEFFIEERYEAGIELKGTEVKSCKNRSVNLKDGFAKIEKGEIFLYNVHISH 66
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N+FNH P R RKLLL KREI RL ++ TL+P+ Y G+ K++LALA+G
Sbjct: 67 YNEGNQFNHEPTRTRKLLLHKREIKRLLGLTQQRRYTLIPLTFYVKD-GIIKVELALAKG 125
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K+ +DKRE+ K++ +R+ + L+E
Sbjct: 126 KQKHDKRESIKRKTMEREMEKALKEK 151
>gi|126661808|ref|ZP_01732807.1| SsrA-binding protein [Flavobacteria bacterium BAL38]
gi|126625187|gb|EAZ95876.1| SsrA-binding protein [Flavobacteria bacterium BAL38]
Length = 150
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 103/146 (70%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
V N++A+++Y I+ + AGIVLTGTE+KS+R+ K +I++S+ F + E+++ NS I E
Sbjct: 5 VNILNKRAKFDYEILDKYTAGIVLTGTEIKSIRLGKASITESFCEFSDGELFVINSNIEE 64
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
YL +NH + RKLLL+K+E+ +L+ G+T+VP++++ N KGLAK+D+AL +G
Sbjct: 65 YLYGTHYNHKTKSERKLLLNKKELKKLFKDSDNKGLTIVPLRLFTNEKGLAKLDIALCRG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KKNYDKRE+ K++D R RI +
Sbjct: 125 KKNYDKRESLKEQDTKRDLDRIKKSF 150
>gi|330984198|gb|EGH82301.1| SsrA-binding protein [Pseudomonas syringae pv. lachrymans str.
M301315]
Length = 163
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ NRKAR++Y + + F+AGI L G EVKSLR K ++DSY + E ++ I
Sbjct: 14 TIAQNRKARHDYAVEQKFQAGIALEGWEVKSLRAGKAQLTDSYVLLKGGEAFVIGLQIQP 73
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ P R RKLLLS++E+ RL ++V + G T V + + ++ L K +ALA+
Sbjct: 74 LQTASTHVEADPLRTRKLLLSRKELDRLTSSVEQKGYTAVVLSLEWSKH-LVKCTVALAK 132
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKKN++KRET K+RD +Q + ++
Sbjct: 133 GKKNFEKRETLKERDAKKQIDQAFKQR 159
>gi|300775076|ref|ZP_07084939.1| SsrA-binding protein [Chryseobacterium gleum ATCC 35910]
gi|300506891|gb|EFK38026.1| SsrA-binding protein [Chryseobacterium gleum ATCC 35910]
Length = 153
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/150 (43%), Positives = 98/150 (65%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K V NR+AR+ Y I+ +EAG+VLTGTE+KSLR SK +I++S+ F + E+++ N
Sbjct: 3 KIEKTVNILNRRARFEYEILEEYEAGMVLTGTEIKSLRSSKASITESFCQFIDGELYIIN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I EY +NH +R RKLLL K+E+ +L ++ G T++P+K+Y +G AK+ +
Sbjct: 63 MMIDEYKLGTFYNHKTKRERKLLLHKKELQKLEKKLKDAGNTIIPLKLYITDRGKAKVLI 122
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
AL +GKK +DKRE K R+ R RIL++
Sbjct: 123 ALGRGKKLFDKREAIKDRENKRNLDRILKK 152
>gi|325954864|ref|YP_004238524.1| SsrA-binding protein [Weeksella virosa DSM 16922]
gi|323437482|gb|ADX67946.1| SsrA-binding protein [Weeksella virosa DSM 16922]
Length = 167
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/153 (41%), Positives = 97/153 (63%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
K++ N++AR+ Y ++ F+AGI L GTE+KS+R+ K +I DS+ +N E++
Sbjct: 14 KYSKVSKEISIKNKRARFEYELLEGFDAGIQLFGTEIKSIRLGKASIVDSFCQMKNGELY 73
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ N +I EY +NH P+R RKLLL K+E+ +L + G+T+VP +Y N KGLAK
Sbjct: 74 IINMFIDEYAWGTHYNHLPKRERKLLLQKKELKKLERKTKETGLTIVPTTLYINDKGLAK 133
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ + LA+GKK YDKRE K +D R RI++
Sbjct: 134 LRIYLAKGKKLYDKREALKGKDLKRDLERIIKN 166
>gi|123967038|ref|YP_001012119.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9515]
gi|187629771|sp|A2BZ01|SSRP_PROM5 RecName: Full=SsrA-binding protein
gi|123201404|gb|ABM73012.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9515]
Length = 165
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K +++NR A++ Y I + EAGI L GTEVKS+R VN+ D Y +F + EI L N +I
Sbjct: 20 KRLAENRYAKFQYEISETIEAGIELLGTEVKSIRNGNVNLRDGYCSFRDGEILLLNVHIS 79
Query: 72 EYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ + FNH P RNRKLLL K+EI +L + + G+T++P+ IY K+ + +
Sbjct: 80 PHKNVGSFFNHDPLRNRKLLLHKKEIFKLKSNTEKKGLTIIPLSIYLKGS-WIKLTIGIG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157
+GKK +DKR+ +K++D R+ L+
Sbjct: 139 KGKKLHDKRQADKQKDIKREIKTALKR 165
>gi|319941864|ref|ZP_08016185.1| SsrA-binding protein [Sutterella wadsworthensis 3_1_45B]
gi|319804517|gb|EFW01387.1| SsrA-binding protein [Sutterella wadsworthensis 3_1_45B]
Length = 169
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 4/160 (2%)
Query: 1 MSLKSRGNPPKKVV--SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ S K N++A Y+Y I +EAG+VL G EVKS+R + I+ ++
Sbjct: 1 MAANSNKKTTKNTQPRILNKRATYDYAIEERYEAGLVLHGWEVKSVRAGRAQINLAHIYI 60
Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
+ E++L N+++ Q R RKLL+ +REI +L V R TLVP+ ++F
Sbjct: 61 RDGELFLCNAHMNPADQACTHETLETNRTRKLLMHRREIMKLIGRVERQSYTLVPLNLHF 120
Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
G K+DLALA+GK+ Y+KR+ E K++W R++ RI+++
Sbjct: 121 K-NGRVKVDLALARGKREYEKRDDESKKEWKREQERIMKK 159
>gi|298373175|ref|ZP_06983165.1| SsrA-binding protein [Bacteroidetes oral taxon 274 str. F0058]
gi|298276079|gb|EFI17630.1| SsrA-binding protein [Bacteroidetes oral taxon 274 str. F0058]
Length = 150
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/146 (44%), Positives = 98/146 (67%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
++ N+KA ++Y ++ + AGIVL GTE+KS+R K + DSY F+ E+W+ N +I
Sbjct: 5 SQIEIKNKKASFHYELLTKYTAGIVLYGTEIKSIREGKAGLVDSYCAFDKGELWVINMHI 64
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ N +NH R RKLLL+KRE+ ++ AV+ G+T+VP ++Y N KGLAK+D+A+A
Sbjct: 65 AAFRLGNFYNHEAARTRKLLLTKRELRKIERAVKETGLTIVPTRLYINDKGLAKLDIAVA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156
+GKK YDKRE+ K++D R R R
Sbjct: 125 RGKKLYDKRESIKEKDLRRDMERYRR 150
>gi|256545219|ref|ZP_05472584.1| SsrA-binding protein [Anaerococcus vaginalis ATCC 51170]
gi|256399046|gb|EEU12658.1| SsrA-binding protein [Anaerococcus vaginalis ATCC 51170]
Length = 147
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA+++Y + +EAGI L G EVKS+R KV+I +S+ E+++ N +
Sbjct: 2 KILANNKKAKHDYFLEEKYEAGIELKGNEVKSIREGKVSIKESHVGDYKGELFIYNMNVT 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y Q+ N P R RKLLL K+EI +L V + G T++ KIY GL K ++ALA+
Sbjct: 62 PYEQSYEKNIDPIRTRKLLLHKKEIDKLIGKVSQAGYTMIVNKIYLKE-GLIKAEIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRET KK D R+ R L+ +
Sbjct: 121 GKKIYDKRETIKKNDAKRKIERALKNY 147
>gi|261749325|ref|YP_003257010.1| SsrA-binding protein [Blattabacterium sp. (Periplaneta americana)
str. BPLAN]
gi|261497417|gb|ACX83867.1| SsrA-binding protein [Blattabacterium sp. (Periplaneta americana)
str. BPLAN]
Length = 143
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 64/139 (46%), Positives = 94/139 (67%)
Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76
NRKAR+ Y + + AGI L GTEVKS+R+++ NI+DS+ N E++ N YI EY
Sbjct: 5 NRKARFQYKYIEEYIAGIQLFGTEVKSIRLNQANITDSFCQIRNGELYSINMYIAEYKFG 64
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
+NH +R+RKLLL+K+E+ R+ ++ G+TL+P K++FN KG K+ + LA+GKK Y
Sbjct: 65 TNWNHQSKRDRKLLLTKKELIRIEKKLKEPGLTLIPTKLFFNDKGYIKVQIFLAKGKKTY 124
Query: 137 DKRETEKKRDWDRQKHRIL 155
DKRE+ + RD R+ R L
Sbjct: 125 DKRESIRNRDILRELQRSL 143
>gi|311748122|ref|ZP_07721907.1| SsrA-binding protein [Algoriphagus sp. PR1]
gi|126574766|gb|EAZ79147.1| SsrA-binding protein [Algoriphagus sp. PR1]
Length = 155
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 98/154 (63%), Gaps = 2/154 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + N+KA + + + ++ G+VL GTE+KS+R SK+++++++ F
Sbjct: 1 MAKSKKFEKIINI--KNKKASFQFEFIDTYTCGMVLKGTEIKSIRESKISLTEAFCVFLR 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ +I Y A +NH R+RKLLLSK+E+ +L + G++++P++I+ N +
Sbjct: 59 GELYVRQMHIAPYSMAANYNHAAIRDRKLLLSKKELEKLETKSQEKGLSIIPVRIFINDR 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154
GLAK+++AL +GKK +DKR K++D R+ R+
Sbjct: 119 GLAKMEIALGRGKKLHDKRHDLKEKDAKRELQRM 152
>gi|33864670|ref|NP_896229.1| SsrA-binding protein [Synechococcus sp. WH 8102]
gi|39932287|sp|Q7U9W8|SSRP_SYNPX RecName: Full=SsrA-binding protein
gi|33632193|emb|CAE06649.1| tmRNA binding protein SmpB [Synechococcus sp. WH 8102]
Length = 166
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I
Sbjct: 20 RMLADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ A FNH P R RKLL +REI +L + + G+ L+P+ I+ K+ + L
Sbjct: 80 PHSHAGAYFNHDPLRTRKLLAHRREIDKLRGQLDQKGLALIPLNIHLKGS-WIKLTIGLG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR EK++ ++ +
Sbjct: 139 KGRKLHDKRAAEKEKQSKKEVKAAIARF 166
>gi|297566456|ref|YP_003685428.1| SsrA-binding protein [Meiothermus silvanus DSM 9946]
gi|296850905|gb|ADH63920.1| SsrA-binding protein [Meiothermus silvanus DSM 9946]
Length = 143
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/137 (47%), Positives = 96/137 (70%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
+NR+AR++Y I+ ++EAG+ L GTEVKSLR +V+ + S+A FE +E++L N YI Y +
Sbjct: 5 ENRRARHDYEILETYEAGLSLQGTEVKSLRAGQVDFTGSFARFEGEELFLENLYIAPYEK 64
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
+ NH PRR RKLLL + E+ +L + V + G+TLVP+KIYFN +G AK+ L LA+GK+
Sbjct: 65 GSYTNHDPRRLRKLLLHRHELDKLRSRVEQKGLTLVPLKIYFNDRGYAKLLLGLARGKRA 124
Query: 136 YDKRETEKKRDWDRQKH 152
Y K+ +KK+ R
Sbjct: 125 YQKKADDKKQAVQRALE 141
>gi|313206518|ref|YP_004045695.1| ssra-binding protein [Riemerella anatipestifer DSM 15868]
gi|308922587|gb|ADO51648.1| SmpB [Riemerella anatipestifer]
gi|312445834|gb|ADQ82189.1| SsrA-binding protein [Riemerella anatipestifer DSM 15868]
gi|315023541|gb|EFT36545.1| tmRNA-binding protein SmpB [Riemerella anatipestifer RA-YM]
gi|325336034|gb|ADZ12308.1| tmRNA-binding protein [Riemerella anatipestifer RA-GD]
Length = 152
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/151 (43%), Positives = 100/151 (66%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
N + V N++AR+ Y I+ EAGIVLTGTE+K+LR SK +I++S+ F E+++ N
Sbjct: 2 NIQRTVSISNKRARFEYEILEQVEAGIVLTGTEIKALRSSKASITESFCQFIEGELYVIN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I EY +NH +R RKLLL KRE+ + ++ G T+VP+K+Y N +G AK+ +
Sbjct: 62 MTIDEYKLGTFYNHKIKRERKLLLHKRELDKWSKKMKDVGNTIVPLKVYINDRGKAKVLI 121
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
ALA+GKK YDKRE K+R+ + +R+ +++
Sbjct: 122 ALARGKKLYDKREAIKEREAKVKLNRVFKKN 152
>gi|154498534|ref|ZP_02036912.1| hypothetical protein BACCAP_02524 [Bacteroides capillosus ATCC
29799]
gi|150272602|gb|EDM99787.1| hypothetical protein BACCAP_02524 [Bacteroides capillosus ATCC
29799]
Length = 155
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
K++S N KA ++Y I +EAGI L GTEVKS+R VN+ D++ ++ E+ +
Sbjct: 2 DQKGIKIISKNPKAYHDYFIEDKYEAGIELCGTEVKSVRQGNVNLKDAFCIVKDGELSVV 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
+I Y Q N FN PRR R+LL+ KREI RL+ + DG +L+P+ +YF K++
Sbjct: 62 GMHISPYEQGNIFNKDPRRTRRLLMHKREILRLFQKTKVDGYSLIPLSLYFR-NARVKVE 120
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ LA+GKK YDKR+ +D R+ R ++
Sbjct: 121 VGLAKGKKLYDKRDAAAAKDAKREMDRAMKSR 152
>gi|89891283|ref|ZP_01202790.1| SsrA-binding protein [Flavobacteria bacterium BBFL7]
gi|89516595|gb|EAS19255.1| SsrA-binding protein [Flavobacteria bacterium BBFL7]
Length = 153
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 105/156 (67%), Gaps = 4/156 (2%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + N K NRKAR+ Y I+ + AGIVL GTE+K++R+ K +I++ + F + E
Sbjct: 1 MKFKNNIEIK----NRKARFEYEILDKYMAGIVLGGTEIKAIRLGKASIAEGFCEFTDGE 56
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+W+ N + EY A FNH P++ RKLLL+++E+ +L V G T++P++++ N KGL
Sbjct: 57 LWIINMTVQEYSHATYFNHQPKQARKLLLNRKELKKLEKDVNSSGNTIIPLRLFINDKGL 116
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+D+ALA+GKK +DKRET K RD ++ +I + +
Sbjct: 117 AKMDIALAKGKKLHDKRETIKDRDNKKRLDQIKKAY 152
>gi|313888772|ref|ZP_07822433.1| SsrA-binding protein [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845141|gb|EFR32541.1| SsrA-binding protein [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 151
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 6/154 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS + +++N+KA + Y I ++EAGI L GTEVKS+R VNI D+Y
Sbjct: 1 MSKEKNDA-----IANNKKASHLYFIEDTYEAGIELVGTEVKSIRAGHVNIKDAYCDINK 55
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI+++ +I Y Q N +N P R RKLL+ K EI RL ++G T++P+K+Y +
Sbjct: 56 GEIFVSGMHISPYEQGNIYNVDPMRKRKLLMHKAEILRLEKVKTQEGYTIIPLKVYLK-R 114
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154
G KI +A A+GKK +DKRET KKR+ D++ +
Sbjct: 115 GRVKILIAKAKGKKLWDKRETMKKREVDKRLRQA 148
>gi|294507639|ref|YP_003571697.1| SsrA-binding protein [Salinibacter ruber M8]
gi|294343967|emb|CBH24745.1| SsrA-binding protein [Salinibacter ruber M8]
Length = 154
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 2/135 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNS 68
+VV+ N+KA++ Y I + EAG+VL G+EVKS+R K ++ +Y + + E+ +
Sbjct: 4 GTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHGM 63
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
YI Y +A F H PRRNRKLLL ++I + ++G T+VP+ +YF G K+ +
Sbjct: 64 YIKPYEEAGPFGHEPRRNRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRD-GWVKLKIG 122
Query: 129 LAQGKKNYDKRETEK 143
+A+G++ +DKR+ K
Sbjct: 123 IAKGRQKHDKRQAIK 137
>gi|149196891|ref|ZP_01873944.1| SsrA-binding protein [Lentisphaera araneosa HTCC2155]
gi|149140001|gb|EDM28401.1| SsrA-binding protein [Lentisphaera araneosa HTCC2155]
Length = 147
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ NRKAR+NY I+ +EAG+ L GTEVKS R ++I++++ FE+ E W+ S+I Y
Sbjct: 3 IATNRKARFNYEIIEKYEAGVELQGTEVKSCRNKSISIAEAFVAFESGEAWMRESHISPY 62
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
Q NR NH P+R R+LLL KREI +L V + G++++P+ ++ +G KI + L +GK
Sbjct: 63 EQGNRNNHEPKRKRRLLLHKREIRKLMREVEQKGLSVIPLSVHLK-RGKIKISIGLCRGK 121
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
DKR++ KKRD DR R L+
Sbjct: 122 NTVDKRDSIKKRDNDRALQR-LKNK 145
>gi|313674187|ref|YP_004052183.1| ssra-binding protein [Marivirga tractuosa DSM 4126]
gi|312940885|gb|ADR20075.1| SsrA-binding protein [Marivirga tractuosa DSM 4126]
Length = 154
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 96/152 (63%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + V N+KAR+ Y + ++ GIVL GTE+K++R+ KV++ ++Y E
Sbjct: 1 MSDKKEFSTSVTVKNKKARFEYEWLDTYLTGIVLQGTEIKAIRLHKVSLQEAYCYIHRGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+++ +I Y +NH +R RKLLL K+EI ++ + G+TL+P K++ N +GL
Sbjct: 61 VFVKGMHIGHYELGTHYNHEEKRERKLLLKKQEIEKIRKRMEEKGLTLIPTKLFINNRGL 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154
AK+++ALA+GKK +DKR++ K++D R+ ++
Sbjct: 121 AKLEIALAKGKKMHDKRDSIKEKDMKRELSKM 152
>gi|302326745|gb|ADL25946.1| SsrA-binding protein [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 160
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE- 59
MSLK V NRKA + Y + +FE GI+L G+EVKS+R K + +++ +
Sbjct: 1 MSLKMIKKESSTPVIQNRKANHLYFVDETFEVGIMLIGSEVKSIRNGKCTLGEAWIDIDE 60
Query: 60 -NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
DE+WL ++I EYL ANRFNH+P R RKLL EI ++ A G T++P+K+YF
Sbjct: 61 NKDELWLVGAHIDEYLFANRFNHFPARRRKLLAHTHEIQKMRKAKELKGCTIIPLKMYFK 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +AK+++ + +GK +DKR+ RD + R + H
Sbjct: 121 NR-IAKLEVGICRGKDQHDKRQDILVRDAKMEMARAAKAH 159
>gi|213964246|ref|ZP_03392478.1| SsrA-binding protein [Capnocytophaga sputigena Capno]
gi|213953107|gb|EEB64457.1| SsrA-binding protein [Capnocytophaga sputigena Capno]
Length = 152
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLT 66
K V N++A++ Y I+ + AGIVL GTE+KS+R+ K +I++S+ F + E+++
Sbjct: 2 KIQKTVQILNKRAKFEYEILDKYTAGIVLVGTEIKSIRLGKASIAESFCEFNDKGELFVI 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
NS I Y +NH P+ RKLLL K+E+ +L V+ G+T+VP+K++ N KGLAK+D
Sbjct: 62 NSTIEAYDFGTHYNHRPKTERKLLLQKKELRKLNKEVKNSGLTIVPLKLFINDKGLAKMD 121
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+AL +GKK YDKRET K RD R R+++
Sbjct: 122 IALVRGKKLYDKRETIKDRDNKRNLDRLMKH 152
>gi|32265620|ref|NP_859652.1| SsrA-binding protein [Helicobacter hepaticus ATCC 51449]
gi|39932310|sp|Q7VJX1|SSRP_HELHP RecName: Full=SsrA-binding protein
gi|32261668|gb|AAP76718.1| tmRNA-binding protein SmpB [Helicobacter hepaticus ATCC 51449]
Length = 155
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 60/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
P +V++ N+KA ++Y I++S E+GIVL G+EVKS+R +VN+ DS+ E +L N++
Sbjct: 2 PIRVIAKNKKAYFDYEILQSLESGIVLQGSEVKSIRAGRVNLKDSFIKIIRGEAFLFNAH 61
Query: 70 IPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I F RR RKLLL K+EI +L+ +V ++ +++VP+ IYFN K K+ +A
Sbjct: 62 ISFLQTTYTHFKPNERRERKLLLHKKEIDKLFGSVSKESLSIVPLNIYFNQKNKIKLCIA 121
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L +GKK +DKRE+ KK+ +R+ ++ +
Sbjct: 122 LVRGKKLHDKRESIKKKMLEREARAHMKSY 151
>gi|325104714|ref|YP_004274368.1| SsrA-binding protein [Pedobacter saltans DSM 12145]
gi|324973562|gb|ADY52546.1| SsrA-binding protein [Pedobacter saltans DSM 12145]
Length = 152
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 4/156 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + N+KA + Y+I+ F AGI L GTE+KS+R SK NI DS+ F N
Sbjct: 1 MAAK----ITNNINIRNKKATFEYNILEKFVAGIKLLGTEIKSIRQSKANIGDSFCAFIN 56
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+++ N I EY + +NH +R+RKLLL+K+E+ +L G+T++P++I+ N +
Sbjct: 57 GELYVRNMDIAEYSHGSFYNHEAKRDRKLLLTKKELKKLIIKGEDKGLTIIPLRIFINER 116
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
G AK+++ALAQGKK++DKRE+ K+RD R+ R+++
Sbjct: 117 GFAKMEIALAQGKKSFDKRESIKERDIKREMDRMVK 152
>gi|269123483|ref|YP_003306060.1| SsrA-binding protein [Streptobacillus moniliformis DSM 12112]
gi|268314809|gb|ACZ01183.1| SsrA-binding protein [Streptobacillus moniliformis DSM 12112]
Length = 144
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 1/142 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++++N+KA ++Y I + AGI L GTEVKS+++ KV+I +S+ +E+W+ ++
Sbjct: 2 KILANNKKAYFDYFIEDEYVAGIELKGTEVKSIKLGKVSIKESFVRIIKNEVWILGMFVS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y N +N R RKLLL+KREI +L V+ G T+VP+ + FN +GL K+ +A A+
Sbjct: 62 QYTFGNIYNVNETRVRKLLLNKREIKKLSEKVKEQGYTIVPLTV-FNQEGLIKVKIATAR 120
Query: 132 GKKNYDKRETEKKRDWDRQKHR 153
GKKNYDKRE+ K+RD R +
Sbjct: 121 GKKNYDKRESIKQRDILRDIKK 142
>gi|56966939|pdb|1WJX|A Chain A, Crystal Sturucture Of Tt0801 From Thermus Thermophilus
gi|309319907|pdb|3IZ4|B Chain B, Modified E. Coli Tmrna In The Resume State With The
Trna-Like Domain In The Ribosomal P Site Interacting
With The Smpb
Length = 122
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 64/120 (53%), Positives = 86/120 (71%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y
Sbjct: 3 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 62
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 63 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 122
>gi|33241225|ref|NP_876167.1| SsrA-binding protein [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|39932301|sp|Q7V9Q3|SSRP_PROMA RecName: Full=SsrA-binding protein
gi|33238755|gb|AAQ00820.1| tmRNA-binding protein [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 165
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NR AR+ Y I+ EAGI L GTEVKS+R VN+ D + + L N +I +
Sbjct: 21 LAENRYARHQYEILEDIEAGIELLGTEVKSIRAGNVNLRDGFCLIREGSLLLHNVHISPF 80
Query: 74 LQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
A + FNH P R RKLL ++EI++L V R G+TLVP+ I+ KI + L +G
Sbjct: 81 NNAGSFFNHEPLRVRKLLAHRKEINKLETQVNRKGLTLVPLNIFLKGS-WIKITIGLGKG 139
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
+K +DKRE EK++ +R+ L +
Sbjct: 140 RKLHDKRENEKRKQSEREVKSALARY 165
>gi|289549235|ref|YP_003474223.1| SsrA-binding protein [Thermocrinis albus DSM 14484]
gi|289182852|gb|ADC90096.1| SsrA-binding protein [Thermocrinis albus DSM 14484]
Length = 157
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 64/145 (44%), Positives = 90/145 (62%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSK-VNISDSYATFENDEIWLTNSYIP 71
V+ NR+AR Y ++ ++EAGIVL G EVK+LR + V+ DS+ EN E WL N YI
Sbjct: 8 TVAYNREARAEYEVIETYEAGIVLEGPEVKALRNKQTVSFKDSFVRIENGEAWLYNLYIA 67
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y A P R RKLLL KREI RL V+ G T++P+++YF K+++AL +
Sbjct: 68 PYRYATIKPPDPLRKRKLLLHKREILRLMGKVQEKGYTIIPLRVYFK-NNKVKVEIALVR 126
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +D+RE ++RD RQ R ++
Sbjct: 127 GKKQHDRREELRERDLRRQLEREIK 151
>gi|83815449|ref|YP_445744.1| SsrA-binding protein [Salinibacter ruber DSM 13855]
gi|123528680|sp|Q2S237|SSRP_SALRD RecName: Full=SsrA-binding protein
gi|83756843|gb|ABC44956.1| SsrA-binding protein [Salinibacter ruber DSM 13855]
Length = 154
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 85/135 (62%), Gaps = 2/135 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNS 68
+VV+ N+KA++ Y I + EAG+VL G+EVKS+R K ++ +Y + + E+ +
Sbjct: 4 GTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHGM 63
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
YI Y +A F H PRRNRKLLL ++I + ++G T+VP+ +YF G AK+ +
Sbjct: 64 YIKPYEEAGPFGHEPRRNRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRD-GWAKLKIG 122
Query: 129 LAQGKKNYDKRETEK 143
+A+G++ +DKR+ K
Sbjct: 123 IAKGRQKHDKRQAIK 137
>gi|261404140|ref|YP_003240381.1| SsrA-binding protein [Paenibacillus sp. Y412MC10]
gi|261280603|gb|ACX62574.1| SsrA-binding protein [Paenibacillus sp. Y412MC10]
Length = 189
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M KS G KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R + NI D++AT N
Sbjct: 31 MGKKSDG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRANIGDAFATIRN 86
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EI + N +I + Q NR N P R RKLLL K +I +L ++DG +VP+KIY
Sbjct: 87 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLLGLSKQDGYAIVPLKIYIR- 145
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GK+ YDKR K+D R R LRE
Sbjct: 146 NGYAKLLLGLGKGKRQYDKRADAAKKDAQRDIQRALREK 184
>gi|223040457|ref|ZP_03610731.1| SsrA-binding protein [Campylobacter rectus RM3267]
gi|222878307|gb|EEF13414.1| SsrA-binding protein [Campylobacter rectus RM3267]
Length = 151
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K ++ N+KA +++ I+ +FEAGIVL G+EVK+LR + N+ DS+A E++L N++I
Sbjct: 3 KDLAKNKKALFDFSIIETFEAGIVLKGSEVKALRAGRANLKDSFARVIKGELFLLNAHIS 62
Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F R RKLL+ +++I +++ V +DG+TLV + +Y N K + K LALA
Sbjct: 63 HLNTTHSAFRPDERAPRKLLMHRKQIDKIFGQVTQDGLTLVVLALYLNDKNIVKARLALA 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET K+++ D++ ++++
Sbjct: 123 KGKNLHDKRETIKRKEADKEARAAMKKY 150
>gi|157738285|ref|YP_001490969.1| tmRNA-binding protein SmpB [Arcobacter butzleri RM4018]
gi|187611469|sp|A8EWH6|SSRP_ARCB4 RecName: Full=SsrA-binding protein
gi|157700139|gb|ABV68299.1| tmRNA-binding protein SmpB [Arcobacter butzleri RM4018]
Length = 158
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ + K +V N+KA +++ I+ + EAGIVL G+EVK++R +VN+ DS+ E
Sbjct: 1 MANKKDTKKNLVFKNKKAFHDFTILETLEAGIVLEGSEVKAIREGRVNLKDSFVRIIKGE 60
Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L N++I + + RR+RKLLL ++I ++Y+ V +DG+TLV +K+YFN K
Sbjct: 61 VFLLNAHISHLSTTHSTYRPDERRSRKLLLHSKQIDKMYSKVTKDGITLVALKLYFNDKN 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ KI++A AQGKK +DKRE K + R+ ++L+
Sbjct: 121 MIKIEVATAQGKKLHDKREDLKAKTMKRETEQVLKSF 157
>gi|159904282|ref|YP_001551626.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9211]
gi|238687127|sp|A9BD59|SSRP_PROM4 RecName: Full=SsrA-binding protein
gi|159889458|gb|ABX09672.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9211]
Length = 166
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++NR AR+ Y I+ + E GI L GTEVKS+R N+ D + E+ L N +I
Sbjct: 21 LAENRLARHQYEILETLETGIELVGTEVKSIRAGNTNLRDGFCLIREGELQLHNVHISPL 80
Query: 74 LQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
A N FNH P R RKLL ++EI++L V R G+TL+P+ I+ KI + + +G
Sbjct: 81 NNAGNFFNHDPLRTRKLLAHRKEINKLEIQVARKGLTLIPLSIHLKGS-WIKIIIGVGKG 139
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
+K +DKRE +K++ +R L +
Sbjct: 140 RKLHDKREDDKRKQANRDMKSALARY 165
>gi|118137454|pdb|2CZJ|A Chain A, Crystal Structure Of The Trna Domain Of Tmrna From Thermus
Thermophilus Hb8
gi|118137455|pdb|2CZJ|C Chain C, Crystal Structure Of The Trna Domain Of Tmrna From Thermus
Thermophilus Hb8
gi|118137456|pdb|2CZJ|E Chain E, Crystal Structure Of The Trna Domain Of Tmrna From Thermus
Thermophilus Hb8
gi|118137457|pdb|2CZJ|G Chain G, Crystal Structure Of The Trna Domain Of Tmrna From Thermus
Thermophilus Hb8
Length = 123
Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats.
Identities = 64/120 (53%), Positives = 86/120 (71%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y
Sbjct: 4 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 63
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK
Sbjct: 64 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123
>gi|189501619|ref|YP_001957336.1| SsrA-binding protein [Candidatus Amoebophilus asiaticus 5a2]
gi|189497060|gb|ACE05607.1| SsrA-binding protein [Candidatus Amoebophilus asiaticus 5a2]
Length = 156
Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + N +V N++A + Y + F AGIVLTGTE+KS+R +KV++ ++Y F++ E
Sbjct: 1 MNVKKNKTTGLVIRNKQASFEYTFIDKFIAGIVLTGTEIKSIRKAKVSLQEAYCYFKSGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+W+ + +I +Y Q N +NH R RKLLL+++E+++L + G+T++P++++ +
Sbjct: 61 LWIKSMHIAQYEQGNIYNHVENRERKLLLTRKELNKLIKN-QEKGLTIIPIQLFIDENNR 119
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
AK+ +ALA+GKK YDKR+ K+RD R R
Sbjct: 120 AKLQIALAKGKKLYDKRQHIKERDVQRDMER 150
>gi|45658263|ref|YP_002349.1| SsrA-binding protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|56749629|sp|Q72PQ0|SSRP_LEPIC RecName: Full=SsrA-binding protein
gi|45601505|gb|AAS70986.1| SsrA-binding protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
Length = 160
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + +V N+KA++N+ ++ EAGIVL+G+EVKSLR K N++D++A +N
Sbjct: 1 MVKKKEESGHSPLV--NKKAKFNFELISFLEAGIVLSGSEVKSLRDKKGNLTDAFAKIKN 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N I Y NH R RKLLL K+EI +L V+ G+ LV K+YF
Sbjct: 59 GEVFLENFSIAPYKNGGYANHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNN 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++A+ + KK +DKR+ +K+D ++ R L+ N
Sbjct: 119 LRVKVEIAVGKPKKLHDKRDDLQKKDAQQEIARALKSSN 157
>gi|298208385|ref|YP_003716564.1| SsrA-binding protein [Croceibacter atlanticus HTCC2559]
gi|83848306|gb|EAP86176.1| SsrA-binding protein [Croceibacter atlanticus HTCC2559]
Length = 152
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN-DEIWLTNSYI 70
+ NRKA+++Y I+ ++ AGI L GTE+K++R K +I++S+ F + +E+++ N I
Sbjct: 4 NINIKNRKAKFDYEILDTYTAGIKLVGTEIKAIRDGKASIAESFCEFNDAEELFVINMTI 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY A FNH P+ RKLLL++ E+ +L+ VR G+T++P+K++ N +G AK+++ LA
Sbjct: 64 QEYSHATHFNHNPKSERKLLLNRSELKKLHKEVRNSGLTIIPLKVFINDRGFAKMNIGLA 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK YDKR+ K R+ ++ RI + +
Sbjct: 124 KGKKLYDKRDAIKDRENKKRLDRIQKAY 151
>gi|256820960|ref|YP_003142239.1| SsrA-binding protein [Capnocytophaga ochracea DSM 7271]
gi|256582543|gb|ACU93678.1| SsrA-binding protein [Capnocytophaga ochracea DSM 7271]
Length = 151
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 64/144 (44%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIPEY 73
N++A++ Y I+ + AGIVL GTE+KS+R+ K +I++S+ F + E+++ NS I Y
Sbjct: 8 ILNKRAKFEYEILDKYTAGIVLVGTEIKSIRMGKASIAESFCEFNDKGELFVINSTIEAY 67
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+NH P+ RKLLL K+E+ +L V+ G+T+VP+K++ N KGLAK+D+AL +GK
Sbjct: 68 DFGTYYNHRPKSERKLLLQKKELRKLNKEVKNSGLTIVPLKLFINEKGLAKMDIALVRGK 127
Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157
K YDKRET K RD R R++++
Sbjct: 128 KLYDKRETIKDRDNKRNLDRLMKK 151
>gi|88808207|ref|ZP_01123718.1| SsrA-binding protein [Synechococcus sp. WH 7805]
gi|148238520|ref|YP_001223907.1| SsrA-binding protein [Synechococcus sp. WH 7803]
gi|187629775|sp|A5GI45|SSRP_SYNPW RecName: Full=SsrA-binding protein
gi|88788246|gb|EAR19402.1| SsrA-binding protein [Synechococcus sp. WH 7805]
gi|147847059|emb|CAK22610.1| SsrA-binding protein [Synechococcus sp. WH 7803]
Length = 165
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + N E+ L N +I +
Sbjct: 23 DNRLARHQYDILETLETGIELVGTEVKSIRAGQANLRDGFCLIRNGELQLHNVHISPHTH 82
Query: 76 AN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
A+ FNH P R R+LL +REI +L + + G+TL+P+ ++ K+ L L +G+K
Sbjct: 83 ASGYFNHDPLRVRRLLAHRREIDKLRGQLDQKGLTLIPLNLHLQGS-WIKLTLGLGKGRK 141
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR EK + ++ L +
Sbjct: 142 LHDKRAAEKDKQIKKETRAALSRY 165
>gi|24214002|ref|NP_711483.1| SsrA-binding protein [Leptospira interrogans serovar Lai str.
56601]
gi|30173251|sp|Q8CXT8|SSRP_LEPIN RecName: Full=SsrA-binding protein
gi|24194867|gb|AAN48501.1| SsrA-binding protein [Leptospira interrogans serovar Lai str.
56601]
Length = 160
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 2/159 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M K + +V N+KA++N+ ++ EAGIVL+G+EVKSLR K N++D++A +N
Sbjct: 1 MVKKKEESGHSPLV--NKKAKFNFELISFIEAGIVLSGSEVKSLRDKKGNLTDAFAKIKN 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E++L N I Y NH R RKLLL K+EI +L V+ G+ LV K+YF
Sbjct: 59 GEVFLENFSIAPYKNGGYANHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNN 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++A+ + KK +DKR+ +K+D ++ R L+ N
Sbjct: 119 LRVKVEIAVGKPKKLHDKRDDLQKKDAQQEIARALKSSN 157
>gi|315636576|ref|ZP_07891810.1| SsrA-binding protein [Arcobacter butzleri JV22]
gi|315479085|gb|EFU69784.1| SsrA-binding protein [Arcobacter butzleri JV22]
Length = 158
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ + + K +V N+KA +++ I+ + EAGIVL G+EVK++R +VN+ DS+ E
Sbjct: 1 MANNKDTKKNLVFKNKKAFHDFTILETLEAGIVLEGSEVKAIREGRVNLKDSFVRIIKGE 60
Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L N++I + + RR+RKLLL ++I ++Y+ V +DG+TLV +K+YFN K
Sbjct: 61 VFLLNAHISHLSTTHSTYRPDERRSRKLLLHSKQIDKMYSKVTKDGITLVALKLYFNDKN 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ KI++A AQGKK +DKRE K + R+ ++L+
Sbjct: 121 MIKIEVATAQGKKLHDKREDLKAKTMKRETEQVLKSF 157
>gi|255321471|ref|ZP_05362629.1| SsrA-binding protein [Campylobacter showae RM3277]
gi|255301327|gb|EET80586.1| SsrA-binding protein [Campylobacter showae RM3277]
Length = 151
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 97/148 (65%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K ++ N+KA +++ I+ +FEAGIVL G+EVK+LR + N+ DS+A E++L N++I
Sbjct: 3 KDLAKNKKALFDFSIIETFEAGIVLKGSEVKALRAGRANLKDSFARVIKGELFLLNAHIS 62
Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F R RKLL+ +++I +++ V ++G+TLV + +Y N K + K +ALA
Sbjct: 63 HLNTTHSAFRPDERAPRKLLMHRKQIDKIFGQVTQEGLTLVVLALYLNDKNIVKARVALA 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET K+++ D++ ++++
Sbjct: 123 KGKNLHDKRETIKRKEADKEARAAMKKY 150
>gi|46447341|ref|YP_008706.1| SsrA-binding protein [Candidatus Protochlamydia amoebophila UWE25]
gi|61216529|sp|Q6MAG8|SSRP_PARUW RecName: Full=SsrA-binding protein
gi|46400982|emb|CAF24431.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 153
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + + + NR+A ++Y I+ +FE GIVL GTE+KS+R + D+Y ++E
Sbjct: 1 MKDKHSD----LVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNE 56
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+WL I Y N NH +R+RKLL+ KREI + A++ G+ L+P+ +Y G
Sbjct: 57 LWLIGCNIAHYRFGNIHNHEEKRDRKLLMHKREIKKCKGAIQEKGLALIPLALYLKQ-GR 115
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDR 149
K+ +A+A+GKK++DKR K+RD R
Sbjct: 116 IKVRIAIAKGKKSFDKRADLKERDDKR 142
>gi|157414223|ref|YP_001485089.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9215]
gi|187629769|sp|A8G7C2|SSRP_PROM2 RecName: Full=SsrA-binding protein
gi|157388798|gb|ABV51503.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9215]
Length = 164
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 9/165 (5%)
Query: 1 MSL---KSRGNPPK----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53
M+ K + N K K+++DNR A++ Y I + EAGI L GTEVKS+R K N+ D
Sbjct: 1 MAKTSNKVKRNANKANIFKLLADNRYAKFQYEISETIEAGIELLGTEVKSIRNGKANLRD 60
Query: 54 SYATFENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVP 112
Y +F ++EI L N +I + + FNH P RNRKLLL K+EI ++ ++ + GMT+VP
Sbjct: 61 GYCSFRDNEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSSTEKKGMTIVP 120
Query: 113 MKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ +Y K+ + + +GKK +DKR+ EK++ R+ + L+
Sbjct: 121 LNLYLKGS-WIKLTIGVGKGKKLHDKRQDEKQKSIKREINSALKR 164
>gi|261414760|ref|YP_003248443.1| SsrA-binding protein [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|261371216|gb|ACX73961.1| SsrA-binding protein [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 156
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE- 59
M K P V NRKA + Y + +FE GI+L G+EVKS+R K + +++ +
Sbjct: 1 MIKKESSTP----VIQNRKANHLYFVDETFEVGIMLIGSEVKSIRNGKCTLGEAWIDIDE 56
Query: 60 -NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
DE+WL ++I EYL ANRFNH+P R RKLL EI ++ A G T++P+K+YF
Sbjct: 57 NKDELWLVGAHIDEYLFANRFNHFPARRRKLLAHTHEIQKMRKAKELKGCTIIPLKMYFK 116
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +AK+++ + +GK +DKR+ RD + R + H
Sbjct: 117 NR-IAKLEVGICRGKDQHDKRQDILVRDAKMEMARAAKAH 155
>gi|255536191|ref|YP_003096562.1| tmRNA-binding protein SmpB [Flavobacteriaceae bacterium 3519-10]
gi|255342387|gb|ACU08500.1| tmRNA-binding protein SmpB [Flavobacteriaceae bacterium 3519-10]
Length = 155
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 66/152 (43%), Positives = 99/152 (65%)
Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65
+ K V NR+AR+ Y ++ EAG+VLTGTE+KSLR SK +I+D++ F + E+++
Sbjct: 3 KMKIEKSVTILNRRARFEYELLEEIEAGMVLTGTEIKSLRSSKASITDAFCQFIDGELYI 62
Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N I EY +NH +R RKLLL K E+ + ++ G T++P+K+Y NAKG AKI
Sbjct: 63 INMMIDEYKLGTFYNHKTKRERKLLLHKTELKKFEKKLKDVGNTIIPLKMYINAKGKAKI 122
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+A+ +GKK +DKRE+ K R+ R RIL++
Sbjct: 123 LIAVGRGKKLFDKRESIKDRENKRNIDRILKK 154
>gi|223940833|ref|ZP_03632664.1| SsrA-binding protein [bacterium Ellin514]
gi|223890510|gb|EEF57040.1| SsrA-binding protein [bacterium Ellin514]
Length = 151
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 67/145 (46%), Positives = 89/145 (61%), Gaps = 1/145 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N KAR +YHI+ +FEAGI L GTEVKSLR I+D++A END+++L N +I EY
Sbjct: 4 ILSNHKARRDYHILETFEAGIALKGTEVKSLRAGLGQIADAFARVENDQVFLYNVHIDEY 63
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
NR NH P+ RKLLL K EI +L+ G L P+ Y+ G K+ LA+ +GK
Sbjct: 64 RFGNRQNHEPKSARKLLLHKSEIRKLFGLASVKGNALFPLSFYWK-NGKVKVALAVGKGK 122
Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158
+DKR+ KKRD DR+ R H
Sbjct: 123 VEFDKRDDIKKRDADRELKRATMHH 147
>gi|315224161|ref|ZP_07866001.1| SsrA-binding protein [Capnocytophaga ochracea F0287]
gi|314945894|gb|EFS97903.1| SsrA-binding protein [Capnocytophaga ochracea F0287]
Length = 151
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/144 (43%), Positives = 99/144 (68%), Gaps = 1/144 (0%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIPEY 73
N++A++ Y I+ + AGI+L GTE+KS+R+ K +I++S+ F + E+++ NS I Y
Sbjct: 8 ILNKRAKFEYEILDKYTAGIMLVGTEIKSIRLGKASIAESFCEFNDKGELFVINSTIEAY 67
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+NH P+ RKLLL K+E+ +L V+ G+T+VP+K++ N KGLAK+D+AL +GK
Sbjct: 68 DFGTYYNHRPKSERKLLLQKKELRKLNKEVKNSGLTIVPLKLFINEKGLAKMDIALVRGK 127
Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157
K YDKRET K RD R R++++
Sbjct: 128 KLYDKRETIKDRDNKRNLDRLMKK 151
>gi|261367393|ref|ZP_05980276.1| SsrA-binding protein [Subdoligranulum variabile DSM 15176]
gi|282570159|gb|EFB75694.1| SsrA-binding protein [Subdoligranulum variabile DSM 15176]
Length = 155
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ KKV++ NR+AR+ Y ++ + E GI L GTEVKSLR VN+ DS+A ++ E+
Sbjct: 2 AEDKSGKKVIAQNREARHEYFVIEALETGIELVGTEVKSLRAGGVNLKDSWADIDDGELI 61
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
+ +I Y Q N FN PRR R+LL K EI RL ++ G TL+P+ +YF G K
Sbjct: 62 VKGMHISPYEQGNIFNKDPRRPRRLLAHKAEIRRLGQQIKLQGYTLIPLSLYFK-HGRVK 120
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
++L L +GKK YDKR RD R R L+
Sbjct: 121 LELGLCKGKKLYDKRAAAAARDAKRDIDRALK 152
>gi|315638596|ref|ZP_07893770.1| SsrA-binding protein [Campylobacter upsaliensis JV21]
gi|315481220|gb|EFU71850.1| SsrA-binding protein [Campylobacter upsaliensis JV21]
Length = 150
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++YHI+ FEAGIVL G+EV +LR + N+ DS+ E++L N++I
Sbjct: 2 KIIARNKKALFDYHIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIRGELFLLNAHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G TLV + +YFNAK AK+ LALA
Sbjct: 62 LLSTTHSFYRHEERGVRKLLMHRKQIDKLLGKVSVEGYTLVALDLYFNAKNKAKLTLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRE KK+ D L+ +
Sbjct: 122 KGKTLHDKREVLKKKQADLDAKMALKNY 149
>gi|228472801|ref|ZP_04057559.1| SsrA-binding protein [Capnocytophaga gingivalis ATCC 33624]
gi|228275852|gb|EEK14618.1| SsrA-binding protein [Capnocytophaga gingivalis ATCC 33624]
Length = 152
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/148 (42%), Positives = 101/148 (68%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYI 70
V N++AR+ Y ++ + AGIVL GTE+KS+R+ K +I++S+ F E E+++ N I
Sbjct: 4 NVNIQNKRARFEYELLDKYIAGIVLRGTEIKSIRLGKASIAESFCEFNEKGELFVINMTI 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
EY +NH P+ RKLLL K+E+ +L+ V+ G+T+VP++++ + KG AK+++AL
Sbjct: 64 EEYAWGTYYNHKPKSERKLLLKKQELKKLHKEVKNSGLTIVPLRVFLSEKGFAKMEIALV 123
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKRET K+RD RQ RI + +
Sbjct: 124 RGKKLHDKRETIKERDNKRQLDRIKKAY 151
>gi|222824059|ref|YP_002575633.1| SsrA-binding protein [Campylobacter lari RM2100]
gi|222539281|gb|ACM64382.1| SsrA-binding protein [Campylobacter lari RM2100]
Length = 152
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/149 (40%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK + N+KA ++Y I+ FEAGIVL G+EV +LR S+ N+ DS+ EI+L N++I
Sbjct: 3 KKTIVKNKKAFFDYEILEKFEAGIVLKGSEVVALRASRANLKDSFVRIIKGEIFLLNAHI 62
Query: 71 PEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
+ F H + RKLL+ K++I +L+ + G T+VP+++YFN K AK+ +AL
Sbjct: 63 SHLSTTHAFYKHEEKGARKLLMHKKQIDKLFGKISTQGFTIVPLELYFNEKNKAKVLIAL 122
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158
A+GK +DKRE+ KK+ D + ++ H
Sbjct: 123 AKGKNLHDKRESLKKKQADLEARAAMKNH 151
>gi|124026773|ref|YP_001015888.1| SsrA-binding protein [Prochlorococcus marinus str. NATL1A]
gi|166223237|sp|A2C564|SSRP_PROM1 RecName: Full=SsrA-binding protein
gi|123961841|gb|ABM76624.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. NATL1A]
Length = 165
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 2/151 (1%)
Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
+ +++NR+ARY Y I+ + E G+ L GTEVKS+R KVN+ D + + D+I L N
Sbjct: 16 DGNRRLAENRQARYEYEILETLETGLELLGTEVKSIRAGKVNLKDGFCLIKKDQIQLHNV 75
Query: 69 YIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I + A FNH P R ++LL ++EI +L ++ R G+T++P+ +Y K+ +
Sbjct: 76 HISPHNHAGKFFNHEPLRIKRLLAHRKEIEKLKISLERKGLTIIPLSLYLKGS-WIKLKI 134
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +G+K +DKR+ EK D R L+
Sbjct: 135 GVGKGRKTHDKRDREKINDSKRDVANALKRF 165
>gi|116328638|ref|YP_798358.1| SsrA-binding protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116330705|ref|YP_800423.1| SsrA-binding protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|122281541|sp|Q04TV5|SSRP_LEPBJ RecName: Full=SsrA-binding protein
gi|122283576|sp|Q04ZS0|SSRP_LEPBL RecName: Full=SsrA-binding protein
gi|116121382|gb|ABJ79425.1| ssrA/tmRNA-binding protein [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116124394|gb|ABJ75665.1| ssrA/tmRNA-binding protein [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 160
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 94/157 (59%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ ++ P N+KA++N+ +V EAGIVL+G+EVKSLR K N++D++A +N E
Sbjct: 1 MANKKEEPGHSPLVNKKAKFNFELVSFIEAGIVLSGSEVKSLREKKGNLTDAFAKIKNGE 60
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N I Y NH R RKLLL K+EI +L V+ G+ LV K+YF
Sbjct: 61 VFLENFSITPYKNGGYVNHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNNLR 120
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
K+++A+ + KK +DKR+ +K+D ++ R L+ N
Sbjct: 121 VKVEIAVGKPKKIHDKRDDMQKKDAQQEIARALKSSN 157
>gi|34810651|pdb|1P6V|A Chain A, Crystal Structure Of The Trna Domain Of Transfer-Messenger
Rna In Complex With Smpb
gi|34810652|pdb|1P6V|C Chain C, Crystal Structure Of The Trna Domain Of Transfer-Messenger
Rna In Complex With Smpb
gi|126031477|pdb|2OB7|B Chain B, Structure Of Tmrna-(Smpb)2 Complex As Inferred From
Cryo-Em
gi|126031478|pdb|2OB7|C Chain C, Structure Of Tmrna-(Smpb)2 Complex As Inferred From
Cryo-Em
Length = 156
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72
+++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI
Sbjct: 9 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 68
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G
Sbjct: 69 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 127
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK YD+R K++ R+ R +
Sbjct: 128 KKLYDRRRELKEKAMKRELEREFK 151
>gi|15605823|ref|NP_213200.1| SsrA-binding protein [Aquifex aeolicus VF5]
gi|6226145|sp|O66640|SSRP_AQUAE RecName: Full=SsrA-binding protein
gi|2982984|gb|AAC06597.1| small protein B [Aquifex aeolicus VF5]
Length = 157
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72
+++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI
Sbjct: 10 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 69
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G
Sbjct: 70 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 128
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK YD+R K++ R+ R +
Sbjct: 129 KKLYDRRRELKEKAMKRELEREFK 152
>gi|171911031|ref|ZP_02926501.1| ssra-binding protein [Verrucomicrobium spinosum DSM 4136]
Length = 159
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ NRKA +YHI+ +EAG+ L GTE+KSLR + +SD++A E E++L I Y
Sbjct: 4 ITINRKAPRDYHILERYEAGVQLKGTEIKSLRQGHITLSDAFARVERGEVFLYGCDIKPY 63
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+A+ H +R+R+LLL K EI +LY A ++ G+T+V ++ Y+ K KI++A+ +GK
Sbjct: 64 DKASHEQHEAKRSRRLLLHKNEIFKLYGASQQKGLTIVALRAYWKNK-KVKIEIAVGRGK 122
Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159
D+R K++ +R+ R + N
Sbjct: 123 DQRDQRHDLKEKVENREAQREMARFN 148
>gi|72383031|ref|YP_292386.1| SsrA-binding protein [Prochlorococcus marinus str. NATL2A]
gi|123620704|sp|Q46IJ5|SSRP_PROMT RecName: Full=SsrA-binding protein
gi|72002881|gb|AAZ58683.1| SsrA-binding protein [Prochlorococcus marinus str. NATL2A]
Length = 165
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 9/166 (5%)
Query: 1 MSLKSRGNP-------PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53
MS K + + +++NR+ARY Y I+ + E G+ L GTEVKS+R KVN+ D
Sbjct: 1 MSKKGKKQSKNNSSVDGNRRLAENRQARYEYEILETLETGLELLGTEVKSIRAGKVNLKD 60
Query: 54 SYATFENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVP 112
+ + D+I L N +I + A FNH P R ++LL ++EI +L ++ R G+T++P
Sbjct: 61 GFCLIKKDQIQLHNVHISPHNHAGKFFNHEPLRIKRLLAHRKEIEKLKISLERKGLTIIP 120
Query: 113 MKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ +Y K+ + + +G+K +DKR+ EK D R L+
Sbjct: 121 LSLYLKGS-WIKLKIGVGKGRKIHDKRDREKINDSKRDVANALKRF 165
>gi|315453623|ref|YP_004073893.1| SmpB-SsrA-binding protein [Helicobacter felis ATCC 49179]
gi|315132675|emb|CBY83303.1| SmpB-SsrA-binding protein [Helicobacter felis ATCC 49179]
Length = 153
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
++ N+KA ++Y I+ + EAGIVL G+EVK++R +VN+ D++ E +L +I
Sbjct: 4 IARNKKAFFDYEILETLEAGIVLVGSEVKAIRAGRVNLKDNFVKIVRGEAFLFGMHISHL 63
Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
AN + R RKLLL K+++ + +A V + +++V +K+YFN + AK+ +AL +G
Sbjct: 64 KTANVHYKPEETRVRKLLLHKKQLAKWFAQVGQQRLSIVALKLYFNQRNRAKLQIALVKG 123
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
KK +DKRE+ KK+ + L+ H+
Sbjct: 124 KKLHDKRESMKKKALEIDAKMALKNHS 150
>gi|154174845|ref|YP_001408538.1| SsrA-binding protein [Campylobacter curvus 525.92]
gi|166222373|sp|A7GZ96|SSRP_CAMC5 RecName: Full=SsrA-binding protein
gi|112803086|gb|EAU00430.1| SsrA-binding protein [Campylobacter curvus 525.92]
Length = 150
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K ++ N+KA +++ I+ +FEAG+VL G+EVK+LR + N+ DS+ EI+L N++I
Sbjct: 2 KDLAKNKKALHDFSILETFEAGVVLKGSEVKALRAGRANLKDSFVRIIKGEIFLLNAHIS 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
N F R RKLL+ +++I +L+ +V +DG+T+V + +Y N K + K +ALA
Sbjct: 62 HLDTTNSHFRPDERAPRKLLMHRKQIDKLFGSVTKDGLTMVALALYLNDKNIIKARVALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KKR+ D + +++
Sbjct: 122 KGKNLHDKRETLKKREADMEARAAMKKF 149
>gi|317968454|ref|ZP_07969844.1| SsrA-binding protein [Synechococcus sp. CB0205]
Length = 165
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
K+ + K+++DNR AR+ Y I+ + E G+ L GTEVKS+R +VN+ D + +
Sbjct: 10 AKALRDAANKLLADNRFARHQYEILETLECGVELMGTEVKSIRAGQVNLRDGFCLIRKGQ 69
Query: 63 IWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+ L N +I + A FNH P R R+LL ++EI +L AV + G+TL+P+ I+
Sbjct: 70 LQLHNVHISPHTHAGAYFNHEPLRTRRLLAHRKEIDKLRIAVDQKGLTLIPLNIHLKGS- 128
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
K + L +G+K +DKR+ E+++ + + + +
Sbjct: 129 WIKATIGLGKGRKLHDKRQEERRKQDIKDAKKAIARY 165
>gi|123969358|ref|YP_001010216.1| SsrA-binding protein [Prochlorococcus marinus str. AS9601]
gi|187629772|sp|A2BTJ8|SSRP_PROMS RecName: Full=SsrA-binding protein
gi|123199468|gb|ABM71109.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. AS9601]
Length = 164
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)
Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61
+ K+++DNR A++ Y I + EAGI L GTEVKS+R K N+ D Y +F +
Sbjct: 9 KKNTNKANNFKLLADNRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDG 68
Query: 62 EIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
EI L N +I + + FNH P RNRKLLL K+EI ++ + + GMT+VP+ +Y
Sbjct: 69 EILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSNTEKKGMTIVPLSLYLKGS 128
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + + +GKK +DKR+ EK++ ++ + L+
Sbjct: 129 -WIKLTIGVGKGKKLHDKRQDEKQKSIKKEINSALKR 164
>gi|126697146|ref|YP_001092032.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9301]
gi|187629768|sp|A3PFA6|SSRP_PROM0 RecName: Full=SsrA-binding protein
gi|126544189|gb|ABO18431.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9301]
Length = 164
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%)
Query: 2 SLKSRGNPPK----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57
S K + N K K++++NR A++ Y I + EAGI L GTEVKS+R K N+ D Y +
Sbjct: 5 SKKVKSNTNKANNFKLLAENRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCS 64
Query: 58 FENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
F + EI L N +I + + FNH P RNRKLLL K+EI ++ + + GMT+VP+ +Y
Sbjct: 65 FRDGEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSNTEKKGMTIVPLSLY 124
Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
KI L + +GKK +DKR+ EK++ ++ + L+
Sbjct: 125 LKGS-WIKITLGVGKGKKLHDKRQDEKQKSIKKEINSALKR 164
>gi|283954670|ref|ZP_06372188.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni
414]
gi|283793862|gb|EFC32613.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni
414]
Length = 150
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAG+VL G+EV +LR + N+ DS+ +EI+L N++I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGLVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNAHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSVEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149
>gi|57242262|ref|ZP_00370201.1| SsrA-binding protein [Campylobacter upsaliensis RM3195]
gi|57016942|gb|EAL53724.1| SsrA-binding protein [Campylobacter upsaliensis RM3195]
Length = 150
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++YHI+ FEAGIVL G+EV +LR + N+ DS+ E++L N++I
Sbjct: 2 KIIARNKKALFDYHIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIRRELFLLNAHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G TL+ + +YFNAK AK+ LALA
Sbjct: 62 LLSTTHSFYRHEERGARKLLMHRKQIDKLLGKVSVEGYTLIALDLYFNAKNKAKLTLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRE KK+ D ++ +
Sbjct: 122 KGKTLHDKREVLKKKQADLDAKMAMKNY 149
>gi|153952300|ref|YP_001397782.1| SsrA-binding protein [Campylobacter jejuni subsp. doylei 269.97]
gi|166222375|sp|A7H2Q2|SSRP_CAMJD RecName: Full=SsrA-binding protein
gi|152939746|gb|ABS44487.1| SsrA-binding protein [Campylobacter jejuni subsp. doylei 269.97]
Length = 150
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ EI+L NS+I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKSEIFLLNSHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149
>gi|116071675|ref|ZP_01468943.1| SsrA-binding protein [Synechococcus sp. BL107]
gi|116065298|gb|EAU71056.1| SsrA-binding protein [Synechococcus sp. BL107]
Length = 166
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I
Sbjct: 20 RLMADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ A+ FNH P R RKLL +REI +L + + G+ L+P+ I+ K+ + +
Sbjct: 80 PHSHASAYFNHDPLRTRKLLAHRREIDKLRGQLEKKGLALIPLNIHLKGS-WIKLTVGVG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR +K++ + L+
Sbjct: 139 KGRKLHDKRAADKEKQTKKDVRSALKNF 166
>gi|15806482|ref|NP_295191.1| SsrA-binding protein [Deinococcus radiodurans R1]
gi|6459225|gb|AAF11033.1|AE001991_2 small protein B [Deinococcus radiodurans R1]
Length = 160
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
NR+A + Y ++ FEAGI LTG+EVKS+R V+ D++A ++ L YIP Y +
Sbjct: 23 TNRRAHHEYELLERFEAGISLTGSEVKSVRAGGVDFRDAFARINGSDVDLEGLYIPVYKE 82
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
A NH PRR R+LLL + EI +L + + G+TLVP ++Y + K++LALA+GKK
Sbjct: 83 ATYNNHEPRRKRRLLLHREEIEKLRRGLEQKGLTLVPTRLYQKGR-YFKVELALARGKKL 141
Query: 136 YDKRETEKKRDWDRQKHRILRE 157
+DKR D +R R LRE
Sbjct: 142 HDKRRA----DAERTVARELRE 159
>gi|299116169|emb|CBN76075.1| SsrA-binding protein [Ectocarpus siliculosus]
Length = 146
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 1/141 (0%)
Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQAN 77
RKAR NY I+ F AGI L G+EVKS R+SK+N+ + +A + + +L +I E +N
Sbjct: 4 RKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSN 63
Query: 78 RFNHY-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
RF + PRR R+LLL KREI +L V + GMT+VP+KI+F+ K+++ LA GK
Sbjct: 64 RFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNRLKVEIGLALGKNVR 123
Query: 137 DKRETEKKRDWDRQKHRILRE 157
DKRE K RD R RI +
Sbjct: 124 DKREDIKARDAKRDIQRISKN 144
>gi|86150393|ref|ZP_01068619.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni CF93-6]
gi|86152573|ref|ZP_01070778.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni HB93-13]
gi|121612288|ref|YP_001000783.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|157415366|ref|YP_001482622.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 81116]
gi|167005698|ref|ZP_02271456.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|218562719|ref|YP_002344498.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|283956502|ref|ZP_06373982.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni
1336]
gi|22096182|sp|Q9PNI9|SSRP_CAMJE RecName: Full=SsrA-binding protein
gi|166222376|sp|A1W092|SSRP_CAMJJ RecName: Full=SsrA-binding protein
gi|172047148|sp|A8FMF8|SSRP_CAMJ8 RecName: Full=SsrA-binding protein
gi|85839218|gb|EAQ56481.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni CF93-6]
gi|85843458|gb|EAQ60668.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni HB93-13]
gi|87249260|gb|EAQ72221.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 81-176]
gi|112360425|emb|CAL35222.1| small protein B homolog [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|157386330|gb|ABV52645.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni
81116]
gi|283792222|gb|EFC31011.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni
1336]
gi|307748007|gb|ADN91277.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni M1]
gi|315926525|gb|EFV05906.1| ssrA-binding protein [Campylobacter jejuni subsp. jejuni DFVF1099]
gi|315932243|gb|EFV11186.1| ssrA-binding protein [Campylobacter jejuni subsp. jejuni 327]
Length = 150
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149
>gi|78183745|ref|YP_376179.1| SsrA-binding protein [Synechococcus sp. CC9902]
gi|123582280|sp|Q3B0J2|SSRP_SYNS9 RecName: Full=SsrA-binding protein
gi|78168039|gb|ABB25136.1| SsrA-binding protein [Synechococcus sp. CC9902]
Length = 167
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I
Sbjct: 20 RLMADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ A+ FNH P R RKLL +REI +L + + G+ L+P+ I+ KI + +
Sbjct: 80 PHSHASAYFNHDPLRTRKLLAHRREIDKLRGQLDKKGLALIPLNIHLKGS-WIKITIGVG 138
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+G+K +DKR +K++ ++ + ++
Sbjct: 139 KGRKLHDKRAADKEKQSKKEVRSAMAKY 166
>gi|254526953|ref|ZP_05139005.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9202]
gi|221538377|gb|EEE40830.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9202]
Length = 164
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 2/155 (1%)
Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
+ K+++DNR A++ Y I + EAGI L GTEVKS+R K N+ D Y +F ++EI
Sbjct: 11 NANKANNFKLLADNRYAKFQYEISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDNEI 70
Query: 64 WLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
L N +I + + FNH P RNRKLLL K+EI ++ + + GMT+VP+ IY
Sbjct: 71 LLLNVHISPHTNVGSFFNHDPLRNRKLLLHKKEIIKMKSNTEKKGMTIVPLNIYLKGS-W 129
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + + +GKK +DKR+ EK++ ++ + L+
Sbjct: 130 IKLTIGVGKGKKLHDKRQYEKQKSIKKEINSALKR 164
>gi|182414534|ref|YP_001819600.1| SsrA-binding protein [Opitutus terrae PB90-1]
gi|177841748|gb|ACB76000.1| SsrA-binding protein [Opitutus terrae PB90-1]
Length = 158
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ ++ + + N KA +Y + FEAGI L GTEVKS+R + ISD++ E
Sbjct: 1 MAAANK-DARRYTEIRNAKALRDYFVDERFEAGIQLHGTEVKSIRAGRAQISDAFGRVEK 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N++I +Y N +NH +R RKLLL + ++ ++ A+ G L+P+++Y
Sbjct: 60 GELWLHNAHIEQYAFGNIYNHDAKRVRKLLLHRHQVRKIQQALDSGGRALIPLRMYLKE- 118
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L K+++AL GKK +DKRET KK+ R + +++
Sbjct: 119 ALVKVEVALCTGKKLFDKRETLKKKAELRDVDKAMKQF 156
>gi|148925995|ref|ZP_01809681.1| small protein B like protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145845474|gb|EDK22566.1| small protein B like protein [Campylobacter jejuni subsp. jejuni
CG8486]
Length = 150
Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRTGRANLKDSFVRIIKNEIFLLNSHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149
>gi|187736065|ref|YP_001878177.1| SsrA-binding protein [Akkermansia muciniphila ATCC BAA-835]
gi|187426117|gb|ACD05396.1| SsrA-binding protein [Akkermansia muciniphila ATCC BAA-835]
Length = 152
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+S N+KAR +Y I+ ++E G+ L GTEVKS+R KVNI+DS+A EN ++ L I +
Sbjct: 5 ISTNKKARRDYEILDTYECGMELKGTEVKSIRAGKVNIADSFARVENGQMLLYGCDIQPW 64
Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
A F H RR R+LLL KREI +L + G +LV +K+Y+ G K+ L L +G
Sbjct: 65 ETAGEFFQHQARRPRRLLLHKREIFKLEQQTSQKGCSLVALKLYWK-NGKVKLALGLGKG 123
Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159
K + D+R K R R+ R + N
Sbjct: 124 KTHRDQRYDLKARVEMREAQREVARIN 150
>gi|86150707|ref|ZP_01068923.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 260.94]
gi|315124584|ref|YP_004066588.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|85841877|gb|EAQ59123.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 260.94]
gi|315018306|gb|ADT66399.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|315929894|gb|EFV09054.1| ssrA-binding protein [Campylobacter jejuni subsp. jejuni 305]
Length = 150
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEARVAMKNY 149
>gi|57237987|ref|YP_179236.1| SsrA-binding protein [Campylobacter jejuni RM1221]
gi|205355851|ref|ZP_03222620.1| small protein B [Campylobacter jejuni subsp. jejuni CG8421]
gi|67461261|sp|Q5HTZ9|SSRP_CAMJR RecName: Full=SsrA-binding protein
gi|57166791|gb|AAW35570.1| SsrA-binding protein [Campylobacter jejuni RM1221]
gi|205346285|gb|EDZ32919.1| small protein B [Campylobacter jejuni subsp. jejuni CG8421]
gi|284926334|gb|ADC28686.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni IA3902]
gi|315058546|gb|ADT72875.1| tmRNA-binding protein SmpB [Campylobacter jejuni subsp. jejuni S3]
Length = 150
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEAKAAMKNY 149
>gi|300813929|ref|ZP_07094233.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 836 str. F0141]
gi|300511992|gb|EFK39188.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 836 str. F0141]
Length = 153
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +S N+KAR+ Y I +EAGI L GTEVKS+R NI D++ +N E
Sbjct: 1 MKKKKADANN-LSQNKKARHEYFIEDIYEAGIELKGTEVKSIRNGSANIKDAFCQIKNGE 59
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+++ N ++ Y + N +N P R RKLLL K EI +L G +++P+++Y + KG
Sbjct: 60 MFIYNMHVAPYEEGNIYNVDPLRTRKLLLHKTEIRKLEKIKNLQGYSIIPLRLYLS-KGR 118
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDR 149
K ++A A+GKK YDKR K++ +
Sbjct: 119 VKAEIATAKGKKLYDKRADMAKKEVQK 145
>gi|113953141|ref|YP_729360.1| SsrA-binding protein [Synechococcus sp. CC9311]
gi|123031933|sp|Q0IDW2|SSRP_SYNS3 RecName: Full=SsrA-binding protein
gi|113880492|gb|ABI45450.1| SsrA-binding protein [Synechococcus sp. CC9311]
Length = 164
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + E+ L N +I +
Sbjct: 22 DNRLARHQYEILETLETGIELLGTEVKSVRAGQANLRDGFCLIRRGELHLHNVHISPHTH 81
Query: 76 AN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
A+ FNH P R R+LL +REI +L + + G+TL+P+ ++ K+ + L +G+K
Sbjct: 82 ASRYFNHDPLRVRRLLAHRREIDKLRGHLEQKGLTLIPLNLHLQGS-WIKVTIGLGKGRK 140
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR K + ++ + +
Sbjct: 141 LHDKRAAAKDKQVKKETRDAIARY 164
>gi|291295932|ref|YP_003507330.1| SsrA-binding protein [Meiothermus ruber DSM 1279]
gi|290470891|gb|ADD28310.1| SsrA-binding protein [Meiothermus ruber DSM 1279]
Length = 143
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 67/137 (48%), Positives = 97/137 (70%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
+NRKAR++Y I+ +FEAG+ L GTEVKS+R +V+ + ++A F+N E++L N YI Y +
Sbjct: 5 ENRKARHDYEILETFEAGLALKGTEVKSIRTGQVDFTGTFARFQNGELFLENLYIAPYEK 64
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
NH PRR RKLLL + E+++L A V + G+TLVP+KIYFN +G AK+ LALA+GK+
Sbjct: 65 GGYTNHDPRRLRKLLLHRHELNKLKARVEQKGLTLVPLKIYFNQQGKAKLLLALARGKRA 124
Query: 136 YDKRETEKKRDWDRQKH 152
Y K+ +KK R+
Sbjct: 125 YQKKADDKKLAVRRELE 141
>gi|88596069|ref|ZP_01099306.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 84-25]
gi|88190910|gb|EAQ94882.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 84-25]
Length = 150
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I
Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61
Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA
Sbjct: 62 LLHTTHSFYKHKERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET KK+ D + ++ +
Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149
>gi|154149176|ref|YP_001406667.1| SsrA-binding protein [Campylobacter hominis ATCC BAA-381]
gi|166222374|sp|A7I2C6|SSRP_CAMHC RecName: Full=SsrA-binding protein
gi|153805185|gb|ABS52192.1| SsrA-binding protein [Campylobacter hominis ATCC BAA-381]
Length = 153
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/148 (38%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K ++ N+KA +N+ I+ +FEAGIVL G+EVK+LR+ + N+ DS+ E++L N++I
Sbjct: 2 KELTKNKKAWHNFTIIENFEAGIVLKGSEVKALRMGRANLKDSFCRIIKGELFLLNAHIS 61
Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
N F RKLL+ K+EI+RL+ AV ++GM +V + +Y N K K +ALA
Sbjct: 62 FLENTNAFFRPSENGARKLLMHKKEINRLFGAVSKEGMAIVALSLYLNDKNKVKARIALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRE K+++ +R+ ++ +
Sbjct: 122 KGKNLHDKREALKRKEAEREAQSAMKRY 149
>gi|262341166|ref|YP_003284021.1| SsrA-binding protein [Blattabacterium sp. (Blattella germanica)
str. Bge]
gi|262272503|gb|ACY40411.1| SsrA-binding protein [Blattabacterium sp. (Blattella germanica)
str. Bge]
Length = 149
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 65/142 (45%), Positives = 96/142 (67%)
Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74
NRKAR+ YH + + AGI L GTEVKS+R +KVNI DS+ +N E++ YI EY
Sbjct: 3 ILNRKARFQYHFLEYYVAGIQLFGTEVKSVRQNKVNIVDSFCQMQNGELYSIGMYIAEYK 62
Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
+NH RR RKLLL+K+E+ ++ ++ G+T+VP++++FN KG K+ + LA+GKK
Sbjct: 63 FGTNWNHSSRRQRKLLLNKKELKKINKKLKDTGLTIVPIELFFNDKGYVKMKIVLAKGKK 122
Query: 135 NYDKRETEKKRDWDRQKHRILR 156
YDKRE+ +KRD R+ + L+
Sbjct: 123 TYDKRESLRKRDSLREIKQSLK 144
>gi|78780094|ref|YP_398206.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9312]
gi|123553674|sp|Q318C5|SSRP_PROM9 RecName: Full=SsrA-binding protein
gi|78713593|gb|ABB50770.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9312]
Length = 164
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+ K +++NR A++ Y I + EAGI L GTEVKS+R K N+ D Y +F + E
Sbjct: 10 KNTNKENNFKRLAENRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDGE 69
Query: 63 IWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
I L N +I + + FNH P RNRKLLL K+EI +L + + GMT+VP+ +Y
Sbjct: 70 ILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKLKSNTEKKGMTIVPLSMYLKGS- 128
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ L + +GKK +DKR+ EK++ ++ + +L+
Sbjct: 129 WIKLTLGVGKGKKLHDKRQDEKQKSIKKEINSVLKR 164
>gi|282882313|ref|ZP_06290944.1| SsrA-binding protein [Peptoniphilus lacrimalis 315-B]
gi|281297863|gb|EFA90328.1| SsrA-binding protein [Peptoniphilus lacrimalis 315-B]
Length = 153
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 2/147 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + +S N+KAR+ Y I +EAGI L GTEVKS+R NI D++ +N E
Sbjct: 1 MKKKKADANN-LSQNKKARHEYFIEDIYEAGIELKGTEVKSIRNGSANIKDAFCQIKNGE 59
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
+++ N ++ Y + N +N P R RKLLL KREI +L G +++P+++Y + KG
Sbjct: 60 MFIYNMHVAPYEEGNIYNVDPLRTRKLLLHKREIRKLEKIKNLQGYSIIPLRLYLS-KGR 118
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDR 149
K ++A A+GKK YDKR K++ +
Sbjct: 119 VKAEIATAKGKKLYDKRADMAKKEVQK 145
>gi|91216463|ref|ZP_01253429.1| ssrA-binding (tmRNA-binding) protein [Psychroflexus torquis ATCC
700755]
gi|91185257|gb|EAS71634.1| ssrA-binding (tmRNA-binding) protein [Psychroflexus torquis ATCC
700755]
Length = 154
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 62/141 (43%), Positives = 96/141 (68%), Gaps = 1/141 (0%)
Query: 20 ARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYIPEYLQANR 78
AR+ Y I+ + AGIVL GTE+KS+R K I++S+ F E E+++ N + EY A
Sbjct: 13 ARFQYEILDKYTAGIVLAGTEIKSIREGKATITESFCEFNEQGELFVINMDVQEYSHATH 72
Query: 79 FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDK 138
FNH P+ RKLLL+K+E+ +L V+ G+T++P++++ N +G AK+ +AL++GKK +DK
Sbjct: 73 FNHKPKNARKLLLNKKELKKLLKEVKNSGLTIIPLRLFLNDRGFAKLQIALSKGKKLHDK 132
Query: 139 RETEKKRDWDRQKHRILREHN 159
RET K RD R+ +RI + N
Sbjct: 133 RETIKDRDTKRKLNRINKTFN 153
>gi|326336149|ref|ZP_08202321.1| SsrA-binding protein [Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691658|gb|EGD33625.1| SsrA-binding protein [Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 155
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 64/142 (45%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYIPEYLQA 76
++A + Y I+ + AGIVL GTE+KS+R+ K +I +S+ F E +E+++ N I EY
Sbjct: 11 KRAHFEYEILDKYIAGIVLKGTEIKSIRLGKASIVESFCEFNEKEELFVINMTIEEYAWG 70
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
+NH P+ RKLLL K+E+ +L+ V+ G+T+VP++I+ KGLAK+++AL +GKK Y
Sbjct: 71 TYYNHKPKSERKLLLKKQELRKLHKEVKNTGLTIVPLRIFIQEKGLAKMEIALVRGKKLY 130
Query: 137 DKRETEKKRDWDRQKHRILREH 158
DKRET K+RD RQ RI ++
Sbjct: 131 DKRETIKERDNKRQLDRIKKDF 152
>gi|260654873|ref|ZP_05860361.1| SsrA-binding protein [Jonquetella anthropi E3_33 E1]
gi|260630375|gb|EEX48569.1| SsrA-binding protein [Jonquetella anthropi E3_33 E1]
Length = 156
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+P KV + NRKAR++Y I+ + E G+VLTGTE+KS+R + N+ D YA F++ E+WL
Sbjct: 3 NSPDDKVAAVNRKARHDYEILETMECGLVLTGTEIKSIRAGRANLKDGYAKFKDGELWLE 62
Query: 67 NSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I Y +A P R RKLLL +RE+ RL A V+ G TLVP+K+Y LAKI
Sbjct: 63 NVHISPYEKATAWVKVEPHRARKLLLHRRELRRLQAKVKERGFTLVPLKLYVKGGKLAKI 122
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+L LA+GK D+R+ ++RD R R LR N
Sbjct: 123 ELGLARGKSAADRRDDIRERDVQRSIARELRNRN 156
>gi|196234697|ref|ZP_03133510.1| SsrA-binding protein [Chthoniobacter flavus Ellin428]
gi|196221245|gb|EDY15802.1| SsrA-binding protein [Chthoniobacter flavus Ellin428]
Length = 153
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+S NRKA +YHI+ FEAG+ L GTEVKS+R+ NI++++A EN + ++ + I Y
Sbjct: 5 ISVNRKALRDYHILERFEAGLELKGTEVKSIRLGLANINNAFARVENGQAYVYDIDIQPY 64
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
++A+ H +R R+LLL K+EI RL+ + G TLV +++Y+ KI++A+ +GK
Sbjct: 65 VRASFEQHESKRIRRLLLHKQEIDRLFGQTQIKGHTLVALRLYWKD-ARVKIEIAVGKGK 123
Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159
+ DKR+ K + R+ R + N
Sbjct: 124 EAGDKRQDLKAKATKRETDREVARFN 149
>gi|114848895|gb|ABI83658.1| tmRNA-binding protein [Coxiella endosymbiont of Amblyomma
americanum]
Length = 154
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 2/146 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
+++ N+K ++Y+I + EAG+VL E+KS+R + + +SY F++ E WL
Sbjct: 2 KQSALRIIVLNKKTFHDYYIEQRLEAGLVLESWEIKSIRAGHIQLRNSYVIFKSREAWLI 61
Query: 67 NSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
+ P A P+R+RKLLL+K EI RL + V++ +T+VP+ +++ K K
Sbjct: 62 GVHCSPPSNIAYHVKPDPKRSRKLLLNKHEIDRLLSTVQKKRLTVVPLDLHW-YKNHVKT 120
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQK 151
++AL +GK+ +DKRET K+R+W+R+K
Sbjct: 121 EVALVRGKRMHDKRETIKRREWERKK 146
>gi|57167992|ref|ZP_00367131.1| SsrA-binding protein [Campylobacter coli RM2228]
gi|305431857|ref|ZP_07401024.1| SsrA-binding protein [Campylobacter coli JV20]
gi|57020366|gb|EAL57035.1| SsrA-binding protein [Campylobacter coli RM2228]
gi|304444941|gb|EFM37587.1| SsrA-binding protein [Campylobacter coli JV20]
Length = 150
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I+ FE+G+VL G+EV +LR + N+ DS+ E++L N++I
Sbjct: 2 KVIARNKKALFDYSIIERFESGVVLKGSEVVALRAGRANLKDSFVRIIKGELFLLNAHIS 61
Query: 72 EYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ + H R RKLL+ +++I +L V +G TLV +++YFN K K LALA
Sbjct: 62 HLSTTHSYYKHEERAARKLLMHRKQIDKLLGKVSIEGYTLVVLELYFNHKNKVKATLALA 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRE+ KK+ D + ++ +
Sbjct: 122 KGKNLHDKRESLKKKQADMEARSAMKNY 149
>gi|225157629|ref|ZP_03725019.1| SsrA-binding protein [Opitutaceae bacterium TAV2]
gi|224802696|gb|EEG20949.1| SsrA-binding protein [Opitutaceae bacterium TAV2]
Length = 157
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 1/158 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M + + + N KA +Y + FEAGI L GTEVKS+R + ISD++ FE
Sbjct: 1 MCAAKKKDTKRYTEVRNAKALRDYTVEERFEAGIQLKGTEVKSIRAGRAQISDAFGRFEK 60
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E+WL N++I EY N +NH RR RKLLL K ++ ++ A++ L+P+++YF
Sbjct: 61 GELWLYNAHIEEYSFGNIYNHDARRIRKLLLHKHQMRKIAQAMQVGARALIPLRMYFKDS 120
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
L KI++AL GKK YDKR +KR+ D + + +
Sbjct: 121 -LVKIEVALGVGKKLYDKRADLRKRESDMEVKKAFKYR 157
>gi|94676475|ref|YP_588997.1| SsrA-binding protein [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
gi|187611471|sp|Q1LSR7|SSRP_BAUCH RecName: Full=SsrA-binding protein
gi|94219625|gb|ABF13784.1| SsrA-binding protein [Baumannia cicadellinicola str. Hc
(Homalodisca coagulata)]
Length = 161
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 5/158 (3%)
Query: 3 LKSRGN---PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
+K++ ++ N++ RY Y I + FEAGI L G EVKSLR V+I+DSY +
Sbjct: 1 MKNQTPCRVSKITTITQNKRVRYEYFIEQEFEAGISLLGWEVKSLRAGIVHINDSYILLK 60
Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+ E +L + + P + ++ + P R+RKLLL +RE+ L V R G T+VP+ +Y+
Sbjct: 61 DSEAFLLGATLRPLIVASSHILYSPMRSRKLLLRRRELDTLLGKVHRKGYTIVPISLYWR 120
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
LAKI L +A+GKK YDKR K+R+W K RI +
Sbjct: 121 -NSLAKIQLGIAKGKKQYDKRHCIKEREWLLNKARITK 157
>gi|315644598|ref|ZP_07897730.1| SsrA-binding protein [Paenibacillus vortex V453]
gi|315280105|gb|EFU43402.1| SsrA-binding protein [Paenibacillus vortex V453]
Length = 159
Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M KS G KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R +VNI D++AT N
Sbjct: 1 MGKKSDG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRVNIGDAFATIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EI + N +I + Q NR N P R RKLLL K +I +L ++DG +VP+KIY
Sbjct: 57 GEIHIHNMHISPFEQGNRNNPLDPTRTRKLLLHKEQIRKLLGLSKQDGYAIVPLKIYIR- 115
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GK+ YDKR K+D R R LRE
Sbjct: 116 NGYAKLLLGLGKGKRQYDKRADAAKKDAQRDIQRALREK 154
>gi|195953392|ref|YP_002121682.1| SsrA-binding protein [Hydrogenobaculum sp. Y04AAS1]
gi|195933004|gb|ACG57704.1| SsrA-binding protein [Hydrogenobaculum sp. Y04AAS1]
Length = 158
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 5/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSK-VNISDSYATFE 59
M + + N P+ V N++ + +V +++AGI L G E+KS+R + V+ D++ E
Sbjct: 1 MKKQEQNNTPRYV---NKEGLHENEVVETYQAGIELLGPEIKSIRNKQTVSFKDAFVRIE 57
Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
N E +L N YI Y A P R RKLLL KREI RL + G T++P+ +YF
Sbjct: 58 NGEAFLHNLYIAPYKYATIKPPDPLRKRKLLLHKREILRLLGKSKEKGYTIIPLSLYFK- 116
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G K+D+AL +GKK YDKR+ K++D R+ R +
Sbjct: 117 NGKVKVDIALVKGKKLYDKRKELKEKDIKRELQREFKGR 155
>gi|329927597|ref|ZP_08281760.1| SsrA-binding protein [Paenibacillus sp. HGF5]
gi|328938386|gb|EGG34776.1| SsrA-binding protein [Paenibacillus sp. HGF5]
Length = 159
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 6/159 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M KS G KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R + NI D++AT N
Sbjct: 1 MGKKSDG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRANIGDAFATIRN 56
Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
EI + N +I + Q NR N P R RKLLL K +I +L ++DG +VP+KIY
Sbjct: 57 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLLGLSKQDGYAIVPLKIYIR- 115
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
G AK+ L L +GK+ YDKR K+D R R LRE
Sbjct: 116 NGYAKLLLGLGKGKRQYDKRADAAKKDAQRDIQRALREK 154
>gi|304373053|ref|YP_003856262.1| Trans-translation protein, binds tmRNA and tRNA [Mycoplasma
hyorhinis HUB-1]
gi|304309244|gb|ADM21724.1| Trans-translation protein, binds tmRNA and tRNA [Mycoplasma
hyorhinis HUB-1]
gi|330723330|gb|AEC45700.1| SsrA-binding protein [Mycoplasma hyorhinis MCLD]
Length = 145
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 99/148 (66%), Gaps = 4/148 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+ A Y+Y I+ +FEAGI L G EVKS+R +KVN+ +S+A F++ E++ +N++I
Sbjct: 2 KIIAKNKVAYYDYEILETFEAGISLMGWEVKSIRANKVNLKNSFAYFKDLELYWSNAHIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y+ R RKLL+ K E+ +++ + +TL+P+ +Y+ G K++LALA+
Sbjct: 62 LYMAVKGDEQ---RTRKLLMHKSELKKIHFKKTTNRLTLIPLSLYWKQ-GKIKLELALAK 117
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159
GK YDKR++EK ++ R+ ++L+ ++
Sbjct: 118 GKTKYDKRQSEKAKEEKRKIEKMLKNYS 145
>gi|163788561|ref|ZP_02183006.1| SsrA RNA binding protein [Flavobacteriales bacterium ALC-1]
gi|159875798|gb|EDP69857.1| SsrA RNA binding protein [Flavobacteriales bacterium ALC-1]
Length = 152
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 1/147 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE-IWLTNSYIP 71
V N+KA++ Y I+ + AGIVLTGTE+KS+R K +I++S+ F + E +++ N +
Sbjct: 5 VNILNKKAKFQYEILDKYTAGIVLTGTEIKSIRSGKASIAESFCEFNDREELFVINMTVE 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY N +NH P+ RKLLL+++E+ +L + G ++P+K+Y N KG AK+ + L +
Sbjct: 65 EYAFGNYYNHKPKAERKLLLNRKELKKLKKEMDVKGNAIIPLKLYINEKGFAKLIIGLGK 124
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRET K RD R RI +
Sbjct: 125 GKKLYDKRETIKDRDNKRDLDRIKKNF 151
>gi|110004072|emb|CAK98411.1| probable ssra-binding protein rna-binding [Spiroplasma citri]
Length = 143
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 94/137 (68%), Gaps = 1/137 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KARYNY I+ ++EAGIVLTG+E+KS+R + V+I++++ +E + N I +
Sbjct: 3 TITVNKKARYNYEIIETYEAGIVLTGSEIKSIRNNDVSINEAFVIIRKNEAFAINMIIAQ 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + + R RKLLL K+EI ++ ++ + +TLVP+K+Y AK+++AL +G
Sbjct: 63 YKFSTAYVPDADRTRKLLLHKKEIKKILQRIKLERLTLVPLKLYLK-NNYAKLEIALVRG 121
Query: 133 KKNYDKRETEKKRDWDR 149
KKNYDKRET K+RD +R
Sbjct: 122 KKNYDKRETIKQRDNER 138
>gi|87123214|ref|ZP_01079065.1| tmRNA binding protein SmpB [Synechococcus sp. RS9917]
gi|86168934|gb|EAQ70190.1| tmRNA binding protein SmpB [Synechococcus sp. RS9917]
Length = 164
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
DNR AR+ Y I+ + + GI L GTEVKS+R + N+ D + N E+ L N +I +
Sbjct: 22 DNRLARHQYEILETLKTGIELVGTEVKSIRAGQANLRDGFCLIRNGELQLHNVHIAPHSH 81
Query: 76 AN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134
A+ +NH P R R+LL +REI +L + + G+ L+P+ ++ K+ + L +G+K
Sbjct: 82 ASGYYNHDPLRVRRLLAHRREIDKLRGQLDQKGLALIPLNMHLQGS-WIKVTIGLGKGRK 140
Query: 135 NYDKRETEKKRDWDRQKHRILREH 158
+DKR EK++ ++ + +
Sbjct: 141 LHDKRAAEKEKQLKKETRAAIARY 164
>gi|322650477|gb|EFY46887.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. OH_2009072675]
Length = 147
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 1/120 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKK 135
>gi|301166051|emb|CBW25625.1| SsrA-binding protein [Bacteriovorax marinus SJ]
Length = 149
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE-NDEIWLTNS 68
KV++ N++A ++Y + EAGIVL GTEVKSLR KV+I++S+ T + N E+W N
Sbjct: 2 GIKVIAKNKRAHFDYQLEDKLEAGIVLVGTEVKSLRNGKVSIAESHITIDGNGEVWAFNI 61
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
IP+Y N NH R RKLLL+ +EI +L+ ++ +T+VP IYF K+++A
Sbjct: 62 KIPQYEFGNINNHVEDRKRKLLLNAKEITKLFHKMKAQNLTIVPTMIYFKGSN-VKLEIA 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHR 153
L +GKK +DKR E+K+ R+ +
Sbjct: 121 LGRGKKLHDKRADEQKKTVQRKLQK 145
>gi|240047684|ref|YP_002961072.1| SsrA-binding protein [Mycoplasma conjunctivae HRC/581]
gi|239985256|emb|CAT05269.1| SsrA-binding protein [Mycoplasma conjunctivae]
Length = 144
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++S+N+ A+++Y I+ + AGI L G EVKS+R +VN+ +S+ F+++E+++TN ++
Sbjct: 2 KIISNNKIAKFDYQILDDYVAGISLLGWEVKSIRAGQVNLRNSFCYFKDNELFVTNMHVS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
EY+ P R+RKLLL + ++++L + +T++P+ I + G K+ +ALA+
Sbjct: 62 EYMNVK---GDPTRSRKLLLKRSQLNKLLKQKTQQKLTIIPLNIGWK-NGKIKLTIALAK 117
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GK YDKR++ K++D R+ ++ + +
Sbjct: 118 GKTKYDKRQSIKEKDEKRKIEKLWKNY 144
>gi|169333799|ref|ZP_02860992.1| hypothetical protein ANASTE_00185 [Anaerofustis stercorihominis DSM
17244]
gi|169259364|gb|EDS73330.1| hypothetical protein ANASTE_00185 [Anaerofustis stercorihominis DSM
17244]
Length = 159
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 57/136 (41%), Positives = 87/136 (63%), Gaps = 2/136 (1%)
Query: 22 YNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWLTNSYIPEYLQANRFN 80
+ YHI+ ++EAG+ L GTEVKS+R KVN+ DSYA +N+E+++ ++ Y N N
Sbjct: 21 FEYHIIETYEAGLELKGTEVKSIRNGKVNLKDSYANISKNNEVFIIGMHVSPYEFGNINN 80
Query: 81 HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRE 140
P R RKLLL+KREI + + +DG TL+P+ ++F+ K K+ +A+ +GKK YDKRE
Sbjct: 81 VDPLRERKLLLNKREIRNIKDYLTKDGYTLIPLDLHFS-KSYVKMSIAVCKGKKLYDKRE 139
Query: 141 TEKKRDWDRQKHRILR 156
K++ R R +
Sbjct: 140 ALKEKAAKRDIDRNFK 155
>gi|254445797|ref|ZP_05059273.1| SsrA-binding protein [Verrucomicrobiae bacterium DG1235]
gi|198260105|gb|EDY84413.1| SsrA-binding protein [Verrucomicrobiae bacterium DG1235]
Length = 158
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + + P+ + N K +Y + +FEAGIVL+GTEVKS+R K +SD + F
Sbjct: 1 MAAKKKSSTPQDI--RNSKVHRDYLVENTFEAGIVLSGTEVKSIRAGKAQVSDGFCRFNK 58
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
E ++ +I EY N NH PRR RKLLL K E+ ++ A+ G + +P ++YF
Sbjct: 59 GEFFIYGLHIDEYAFGNINNHIPRRERKLLLKKSELKKIERALEAGGKSAIPTRLYFKE- 117
Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
L K+++ + GKK +DKRE KK+ R+ R+++E
Sbjct: 118 ALIKVEVGICTGKKLFDKREDLKKKSQMREIDRVMKE 154
>gi|26553806|ref|NP_757740.1| SsrA-binding protein [Mycoplasma penetrans HF-2]
gi|30173301|sp|Q8EW52|SSRP_MYCPE RecName: Full=SsrA-binding protein
gi|26453813|dbj|BAC44144.1| tmRNA-binding small protein B [Mycoplasma penetrans HF-2]
Length = 146
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++ N+K +NY ++ EAGI L G EVKS+ ++ NISDSY F+ +E ++ N I
Sbjct: 2 KILVVNKKLHFNYEVLEKIEAGIELKGVEVKSIHLNNANISDSYVIFKRNEAYILNMNIA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y N +N P R RKLLL K EI + ++++ +T+VP KIY+ K K+++ALA+
Sbjct: 62 PYSHGNIYNVDPLRTRKLLLHKNEIIKYQMRIKKESLTMVPSKIYWR-KNKLKVEIALAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKR+T K RD R+ + +R
Sbjct: 121 GKKQFDKRQTIKDRDNSREARKHIR 145
>gi|171920645|ref|ZP_02695477.2| SsrA-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|185178745|ref|ZP_02554634.2| SsrA-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188024393|ref|ZP_02570717.2| SsrA-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188518480|ref|ZP_02556655.2| SsrA-binding protein [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|188524163|ref|ZP_02557500.2| SsrA-binding protein [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|195867420|ref|ZP_03079424.1| SsrA-binding protein [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|198273448|ref|ZP_03205984.1| SsrA-binding protein [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
gi|209554063|ref|YP_002284478.1| SsrA-binding protein [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|225550399|ref|ZP_03771348.1| SsrA-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
gi|225551348|ref|ZP_03772294.1| SsrA-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|171903374|gb|EDT49663.1| SsrA-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC
33698]
gi|184209353|gb|EDU06396.1| SsrA-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC
27817]
gi|188018661|gb|EDU56701.1| SsrA-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC
27819]
gi|188998250|gb|EDU67347.1| SsrA-binding protein [Ureaplasma urealyticum serovar 11 str. ATCC
33695]
gi|195659942|gb|EDX53322.1| SsrA-binding protein [Ureaplasma urealyticum serovar 12 str. ATCC
33696]
gi|195660896|gb|EDX54149.1| SsrA-binding protein [Ureaplasma urealyticum serovar 9 str. ATCC
33175]
gi|198249968|gb|EDY74748.1| SsrA-binding protein [Ureaplasma urealyticum serovar 4 str. ATCC
27816]
gi|209541564|gb|ACI59793.1| SsrA-binding protein [Ureaplasma urealyticum serovar 10 str. ATCC
33699]
gi|225379163|gb|EEH01528.1| SsrA-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC
27618]
gi|225379553|gb|EEH01915.1| SsrA-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC
27814]
Length = 141
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+ AR NY ++ FE GIVL GTEVKS+ + +I+++Y +E + N ++ +
Sbjct: 2 IVSNKHARRNYELLEFFECGIVLKGTEVKSISRANCSINEAYVQIVKNEALILNMHVASF 61
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ N FN P RNRKLLL K+EI +L V+ MT+VP KIY+ K+++ALA+GK
Sbjct: 62 FEGNNFNQDPYRNRKLLLHKKEIIKLQHLVQTQRMTIVPTKIYWK-NNKLKVEIALAKGK 120
Query: 134 KNYDKRETEKKRDWDRQ 150
+ +DKRE KKRD R+
Sbjct: 121 QLHDKREDLKKRDLARE 137
>gi|22096183|sp|Q9RUC1|SSRP_DEIRA RecName: Full=SsrA-binding protein
Length = 143
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
NR+A + Y ++ FEAGI LTG+EVKS+R V+ D++A ++ L YIP Y +
Sbjct: 6 TNRRAHHEYELLERFEAGISLTGSEVKSVRAGGVDFRDAFARINGSDVDLEGLYIPVYKE 65
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
A NH PRR R+LLL + EI +L + + G+TLVP ++Y + K++LALA+GKK
Sbjct: 66 ATYNNHEPRRKRRLLLHREEIEKLRRGLEQKGLTLVPTRLYQKGR-YFKVELALARGKKL 124
Query: 136 YDKRETEKKRDWDRQKHRILRE 157
+DKR D +R R LRE
Sbjct: 125 HDKRRA----DAERTVARELRE 142
>gi|126640896|ref|YP_001083880.1| SsrA-binding protein [Acinetobacter baumannii ATCC 17978]
Length = 124
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 2/123 (1%)
Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLS 92
+ L G EVKSLR ++++++SY F+N E +L + I P + R RKLLLS
Sbjct: 1 MSLLGWEVKSLRAGRMSLTESYVIFKNGEAFLFGAQIQPLLSASTHIVPEATRTRKLLLS 60
Query: 93 KREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152
+RE+ +L AV + G + VP+ Y+ L K+++AL +GK+ +DKR TEK+RDW R K
Sbjct: 61 RRELEKLMGAVNQKGYSCVPLACYWKGH-LVKLEIALVKGKQLHDKRATEKERDWQRDKA 119
Query: 153 RIL 155
RI
Sbjct: 120 RIF 122
>gi|13357614|ref|NP_077888.1| SsrA-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|167971062|ref|ZP_02553339.1| SsrA-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|168282106|ref|ZP_02689773.1| SsrA-binding protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|168308265|ref|ZP_02690940.1| SsrA-binding protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|170762068|ref|YP_001752137.1| SsrA-binding protein [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|14195227|sp|Q9PR87|SSRP_UREPA RecName: Full=SsrA-binding protein
gi|189046852|sp|B1AI43|SSRP_UREP2 RecName: Full=SsrA-binding protein
gi|11279400|pir||D82939 small protein B UU058 [imported] - Ureaplasma urealyticum
gi|6899007|gb|AAF30463.1|AE002105_4 small protein B [Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827645|gb|ACA32907.1| SsrA-binding protein [Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|171902801|gb|EDT49090.1| SsrA-binding protein [Ureaplasma parvum serovar 1 str. ATCC 27813]
gi|182675880|gb|EDT87785.1| SsrA-binding protein [Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186700958|gb|EDU19240.1| SsrA-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 141
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+ AR NY ++ FE GIVL GTEVKS+ + +I+++Y ++ + N ++ +
Sbjct: 2 IVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANF 61
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
+ N FN P RNRKLLL K+EI RL V+ MT+VP KIY+ KI++AL +GK
Sbjct: 62 FEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWK-NNKLKIEIALGKGK 120
Query: 134 KNYDKRETEKKRDWDRQ 150
+ +DKRE KKRD R+
Sbjct: 121 QLHDKREDIKKRDLARE 137
>gi|3322448|gb|AAC65169.1| small protein (smpB) [Treponema pallidum subsp. pallidum str.
Nichols]
Length = 134
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 54/129 (41%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 27 VRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRN 86
E GI L GTEVKS+R ++ D++A E+WL N +I EY+ A F P R
Sbjct: 2 EDRLECGIALEGTEVKSVRAGHLSFPDAFAEMRGGELWLKNVHIAEYVHACSFAPNPDRM 61
Query: 87 RKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRD 146
RKLL + +I RL V G TLVP++ Y A G K+ L + +GKK +DKR K RD
Sbjct: 62 RKLLAHRDQIARLKRKVEEKGYTLVPLEFYLKA-GRVKVALGICKGKKLFDKRAQIKARD 120
Query: 147 WDRQKHRIL 155
R+ R L
Sbjct: 121 NARELSRSL 129
>gi|94984926|ref|YP_604290.1| SsrA-binding protein [Deinococcus geothermalis DSM 11300]
gi|122986662|sp|Q1J063|SSRP_DEIGD RecName: Full=SsrA-binding protein
gi|94555207|gb|ABF45121.1| SsrA-binding protein [Deinococcus geothermalis DSM 11300]
Length = 143
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 1/137 (0%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
NR+A + Y ++ FEAGI LTG+EVKS+R V+ D++A N + L YIP Y +
Sbjct: 6 TNRRAHHEYELLERFEAGIALTGSEVKSVRAGGVDFRDAFARLNNGNVELEGLYIPTYTE 65
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
A NH PRR R+LLL + EI +L A+ + G+TLVP ++Y + + K++LALA+GKK
Sbjct: 66 ATYNNHEPRRTRRLLLHREEIGKLKRALEQKGLTLVPTRLYQKGR-VFKVELALARGKKL 124
Query: 136 YDKRETEKKRDWDRQKH 152
+DKR E ++ R+
Sbjct: 125 HDKRRAEAEKTLRRELR 141
>gi|189219134|ref|YP_001939775.1| tmRNA-binding protein [Methylacidiphilum infernorum V4]
gi|189185992|gb|ACD83177.1| tmRNA-binding protein [Methylacidiphilum infernorum V4]
Length = 152
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 2/146 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ NR+AR +Y I+++ EAGIVL G+EVKSL+ K ++ ++A EN E +L I Y
Sbjct: 5 LVVNRRARKDYQILKTLEAGIVLLGSEVKSLKAGKGSLEGAFARVENGEAFLYQMNISPY 64
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ A+ P+ RKLLL K+EI L A+ R G T+VP+K+YF +G K+ L +A G
Sbjct: 65 EKAASYALRDPKAPRKLLLHKKEIGELAGAISRQGRTIVPLKLYFR-RGKIKVLLGIASG 123
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
+ DKRE K+++ R+ R+L+
Sbjct: 124 RSKVDKREKIKEQETQREISRVLKRR 149
>gi|320334440|ref|YP_004171151.1| SsrA-binding protein [Deinococcus maricopensis DSM 21211]
gi|319755729|gb|ADV67486.1| SsrA-binding protein [Deinococcus maricopensis DSM 21211]
Length = 140
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 1/137 (0%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
NR+A Y Y ++ FEAGI LTG+EVKS+R V+ D++A N + L YIPEY
Sbjct: 3 TNRRAHYEYELLERFEAGIQLTGSEVKSVRAGGVDFRDAFARVTNGNVDLEGLYIPEYKD 62
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
A NH PRR R+LLL ++EI +L A+ + G++L+P ++Y + K+++A+A+GKK
Sbjct: 63 ATYNNHAPRRTRRLLLHRQEIEKLRRALTQKGLSLIPTRLYQKGRHF-KVEVAVARGKKL 121
Query: 136 YDKRETEKKRDWDRQKH 152
+DKR E+ R+ R+
Sbjct: 122 HDKRRAEQDREARREMR 138
>gi|308064201|gb|ADO06088.1| SsrA-binding protein [Helicobacter pylori Sat464]
Length = 152
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR++ K++ +++ L+ H
Sbjct: 122 KGKKLHDKRQSLKEKALNKEILADLKHH 149
>gi|317010184|gb|ADU80764.1| SsrA-binding protein [Helicobacter pylori India7]
Length = 152
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|189485140|ref|YP_001956081.1| SsrA-binding protein SmpB [uncultured Termite group 1 bacterium
phylotype Rs-D17]
gi|170287099|dbj|BAG13620.1| SsrA-binding protein SmpB [uncultured Termite group 1 bacterium
phylotype Rs-D17]
Length = 153
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 92/146 (63%), Gaps = 2/146 (1%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK +S NRKA YNY I+ E GIVL+G EVKS R S +++ DS F + E + N +I
Sbjct: 7 KKTLSSNRKAYYNYEILEKLETGIVLSGYEVKSARQSNISLVDSVVRFSDCEAFAENMFI 66
Query: 71 PEYLQANRF--NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
Y Q + ++ +R RKLL+ K EI+++ V+ G+T++P+++Y +G K+ +
Sbjct: 67 ASYEQISTHIADYDAKRKRKLLMHKSEINKMRTKVKEKGLTVIPLEVYIGNRGKIKLLIG 126
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRI 154
LA+GKK Y+K+E KK+D +R+ R
Sbjct: 127 LAKGKKTYNKKEALKKKDIEREVARE 152
>gi|261838719|gb|ACX98485.1| SsrA-binding protein [Helicobacter pylori 51]
Length = 152
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR++ K++ +++ L+ H
Sbjct: 122 KGKKLHDKRQSLKEKALNKEILADLKHH 149
>gi|194476932|ref|YP_002049111.1| SsrA-binding protein [Paulinella chromatophora]
gi|171191939|gb|ACB42901.1| SsrA-binding protein [Paulinella chromatophora]
Length = 166
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
++++ NR ARY Y I E GI L GTEVKS+R+ KVN+ D + +EI L
Sbjct: 14 RKGSNRLLASNRFARYQYEIFEVLETGIELLGTEVKSIRLGKVNLRDGFCLIRKNEIKLH 73
Query: 67 NSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
N +I + A+ FNH P R RKLL +EI +L A+ + G++L+P+ +Y K+
Sbjct: 74 NVHISPHSHASAYFNHDPLRVRKLLAHSKEISKLKIALEKKGLSLIPLNLYLKGS-WIKL 132
Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+ L +G+K +DKR E+++ + +L N
Sbjct: 133 SIGLGKGRKLHDKRLEERRKQDAKDIRSVLSRFN 166
>gi|325282889|ref|YP_004255430.1| SsrA-binding protein [Deinococcus proteolyticus MRP]
gi|324314698|gb|ADY25813.1| SsrA-binding protein [Deinococcus proteolyticus MRP]
Length = 143
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76
NR+A Y Y ++ +EAG+ LTG+EVKS+R V+ D++A + L YIP Y +A
Sbjct: 7 NRRAGYEYELLDRYEAGLSLTGSEVKSIRAGGVDFRDAFARLNGRNVDLEGLYIPPYKEA 66
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
NH PRR R+LLL + EI ++ A+ + G+TLVP ++Y + K++LA+A+GKK +
Sbjct: 67 TYNNHEPRRPRRLLLHRMEIEKIRRALEQKGLTLVPTRMYQQGR-YFKVELAVARGKKLH 125
Query: 137 DKRETEKKRDWDRQKHRILREH 158
DKR D ++ R LRE+
Sbjct: 126 DKRRA----DAEKTVRRELREY 143
>gi|308062707|gb|ADO04595.1| SsrA-binding protein [Helicobacter pylori Cuz20]
Length = 152
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR++ K++ +++ L+ H
Sbjct: 122 KGKKLHDKRQSLKEKVLNKEILADLKHH 149
>gi|266625926|ref|ZP_06118861.1| SsrA-binding protein [Clostridium hathewayi DSM 13479]
gi|288862178|gb|EFC94476.1| SsrA-binding protein [Clostridium hathewayi DSM 13479]
Length = 125
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 1/125 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
G K+V++N+KA ++Y I +E GI L GTEVKS+R+ K +I +++ + E+W+
Sbjct: 2 GKESFKLVANNKKAYHDYFIDEKYETGIELAGTEVKSIRMGKCSIKEAFVRIDKGEVWVY 61
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
I Y + N FN P R RKLL+ + EI +L + + G T+VP+++YF L K++
Sbjct: 62 GMNINPYEKGNIFNKDPLRPRKLLMHRAEISKLDSKIAVKGYTIVPLQVYFKGS-LVKLE 120
Query: 127 LALAQ 131
+ LA+
Sbjct: 121 IGLAR 125
>gi|109946797|ref|YP_664025.1| SsrA-binding protein [Helicobacter acinonychis str. Sheeba]
gi|123173590|sp|Q17ZA0|SSRP_HELAH RecName: Full=SsrA-binding protein
gi|109714018|emb|CAJ99026.1| SsrA-binding protein [Helicobacter acinonychis str. Sheeba]
Length = 152
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 50/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR+ K++ +++ L+ H
Sbjct: 122 KGKKLHDKRQNLKEKALNKEILADLKHH 149
>gi|50365026|ref|YP_053451.1| SsrA-binding protein [Mesoplasma florum L1]
gi|61216502|sp|Q6F1Q6|SSRP_MESFL RecName: Full=SsrA-binding protein
gi|50363582|gb|AAT75567.1| tmRNA/ssrA-binding protein [Mesoplasma florum L1]
Length = 149
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 58/148 (39%), Positives = 96/148 (64%), Gaps = 2/148 (1%)
Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+ V++ N+KA++NY I+ ++EAGI L G E+KS+R + NI++++ E +L N+
Sbjct: 2 GEHVIALNKKAKFNYEILETWEAGIELYGPEIKSIRNHEANIAEAFILIRKKEAFLINAN 61
Query: 70 IPEYLQANRFN-HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
I +Y AN P R RKLLL K+EI+++ V + +T+VP+++Y AK+++
Sbjct: 62 IKKYDYANFVKGIDPLRTRKLLLHKKEINKILKRVMLEKLTIVPLRLYLKGN-YAKLEIG 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILR 156
L +GKK +DKRET KKRD +R++ R +
Sbjct: 121 LGRGKKIHDKRETIKKRDIERKEMRKYK 148
>gi|317013210|gb|ADU83818.1| SsrA-binding protein [Helicobacter pylori Lithuania75]
Length = 152
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 93/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR+RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRDRKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|226355766|ref|YP_002785506.1| SsrA-binding protein [Deinococcus deserti VCD115]
gi|226317756|gb|ACO45752.1| putative SsrA-binding protein [Deinococcus deserti VCD115]
Length = 143
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
NR+A Y Y ++ FEAGI LTG+EVKS+R V+ D++A + L YIP Y +
Sbjct: 6 TNRRAHYEYELLERFEAGISLTGSEVKSIRAGGVDFRDAFARLHGGNVDLEGLYIPAYKE 65
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
A NH PRR R+LLL++ EI +L + + G+TLVP ++Y + K++LALA+GKK
Sbjct: 66 ATYNNHEPRRTRRLLLNRMEILKLKKGLEQKGLTLVPTRLYQKGQ-YFKVELALARGKKL 124
Query: 136 YDKRETEKKRDWDRQKH 152
+DKR + ++ R+
Sbjct: 125 HDKRRADAEKTVRRELR 141
>gi|261840119|gb|ACX99884.1| SsrA-binding protein [Helicobacter pylori 52]
Length = 152
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHVYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|188528214|ref|YP_001910901.1| SsrA-binding protein [Helicobacter pylori Shi470]
gi|238691953|sp|B2UVI9|SSRP_HELPS RecName: Full=SsrA-binding protein
gi|188144454|gb|ACD48871.1| SsrA-binding protein [Helicobacter pylori Shi470]
gi|297380703|gb|ADI35590.1| SsrA-binding protein [Helicobacter pylori v225d]
Length = 152
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GKK +DKR++ K++ +++ L+ H
Sbjct: 122 KGKKLHDKRQSLKEKALNKEILADLKHH 149
>gi|15646053|ref|NP_208235.1| SsrA-binding protein [Helicobacter pylori 26695]
gi|108563795|ref|YP_628111.1| SsrA-binding protein [Helicobacter pylori HPAG1]
gi|208435312|ref|YP_002266978.1| SsrA-binding protein [Helicobacter pylori G27]
gi|210135611|ref|YP_002302050.1| SsrA-binding protein [Helicobacter pylori P12]
gi|217033099|ref|ZP_03438563.1| hypothetical protein HPB128_27g6 [Helicobacter pylori B128]
gi|298735590|ref|YP_003728113.1| SsrA-binding protein [Helicobacter pylori B8]
gi|308183539|ref|YP_003927666.1| SsrA-binding protein [Helicobacter pylori PeCan4]
gi|3334331|sp|O25985|SSRP_HELPY RecName: Full=SsrA-binding protein
gi|122386159|sp|Q1CRI5|SSRP_HELPH RecName: Full=SsrA-binding protein
gi|226706524|sp|B6JNU2|SSRP_HELP2 RecName: Full=SsrA-binding protein
gi|226706525|sp|B5Z963|SSRP_HELPG RecName: Full=SsrA-binding protein
gi|2314616|gb|AAD08482.1| small protein (smpB) [Helicobacter pylori 26695]
gi|107837568|gb|ABF85437.1| SsrA-binding protein [Helicobacter pylori HPAG1]
gi|208433241|gb|ACI28112.1| SsrA-binding protein [Helicobacter pylori G27]
gi|210133579|gb|ACJ08570.1| ssra-binding protein [Helicobacter pylori P12]
gi|216945172|gb|EEC23863.1| hypothetical protein HPB128_27g6 [Helicobacter pylori B128]
gi|298354777|emb|CBI65649.1| SsrA-binding protein [Helicobacter pylori B8]
gi|308065724|gb|ADO07616.1| SsrA-binding protein [Helicobacter pylori PeCan4]
gi|317011575|gb|ADU85322.1| SsrA-binding protein [Helicobacter pylori SouthAfrica7]
Length = 152
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|308185207|ref|YP_003929340.1| SsrA-binding protein [Helicobacter pylori SJM180]
gi|308061127|gb|ADO03023.1| SsrA-binding protein [Helicobacter pylori SJM180]
Length = 152
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILTDLKHH 149
>gi|218508405|ref|ZP_03506283.1| SsrA-binding protein [Rhizobium etli Brasil 5]
Length = 114
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 77/113 (68%), Positives = 98/113 (86%)
Query: 46 VSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR 105
K NI++SYA+ ++ EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R
Sbjct: 1 EGKANIAESYASDDDGEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNR 60
Query: 106 DGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+GMTLVP+KIYFN +G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+++
Sbjct: 61 EGMTLVPLKIYFNDRGRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 113
>gi|172058386|ref|YP_001814846.1| SsrA-binding protein [Exiguobacterium sibiricum 255-15]
gi|229559866|sp|B1YL27|SSRP_EXIS2 RecName: Full=SsrA-binding protein
gi|171990907|gb|ACB61829.1| SsrA-binding protein [Exiguobacterium sibiricum 255-15]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 1/126 (0%)
Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66
KV+++N++A ++Y I + EAG+VLTGTE+KS+R K++I D++ F+ E L
Sbjct: 3 KGTSSKVLANNKRASFDYAIEDTIEAGLVLTGTEIKSVRKGKISIGDAFVRFDGGEAILW 62
Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
NS I + Q NR+NH R RKLLL K++I L +V RDG T+VP+KIY G AK
Sbjct: 63 NSNIAHFEQGNRYNHEQLRPRKLLLHKKQIATLMGSVSRDGYTIVPLKIYIK-NGYAKCL 121
Query: 127 LALAQG 132
+ L +G
Sbjct: 122 IGLGRG 127
>gi|13507813|ref|NP_109762.1| SsrA-binding protein [Mycoplasma pneumoniae M129]
gi|2498926|sp|P75043|SSRP_MYCPN RecName: Full=SsrA-binding protein
gi|1673735|gb|AAB95729.1| hypothetical protein MPN_074 [Mycoplasma pneumoniae M129]
Length = 147
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+V+ +N +A+Y+Y+++ + AG+VL G+EVKSL + + ++ ++Y + E+++ + I
Sbjct: 2 RVLVNNPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y + FNH +R +KLLL++ EI ++ A +++G++++P+K++F G K+++ LA+
Sbjct: 62 PYAFSGEFNHPFKRVKKLLLNRNEIKQITARQKQEGLSIIPLKVFFK-NGKIKMEIWLAK 120
Query: 132 GKKNYDKRETEKKRDWDRQKH 152
KK +DKRE K + R+
Sbjct: 121 PKKKFDKREAIKSKTIQRELR 141
>gi|315585832|gb|ADU40213.1| SsrA-binding protein [Helicobacter pylori 35A]
gi|317181127|dbj|BAJ58913.1| SsrA-binding protein [Helicobacter pylori F32]
Length = 152
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 90/148 (60%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + KI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKVKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|15612402|ref|NP_224055.1| SsrA-binding protein [Helicobacter pylori J99]
gi|6685994|sp|Q9ZJH2|SSRP_HELPJ RecName: Full=SsrA-binding protein
gi|4155947|gb|AAD06913.1| putative [Helicobacter pylori J99]
gi|317014856|gb|ADU82292.1| SsrA-binding protein [Helicobacter pylori Gambia94/24]
Length = 152
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN K AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQMEASKERLSIVGLKLYFNQKNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|21672526|ref|NP_660593.1| SsrA-binding protein [Buchnera aphidicola str. Sg (Schizaphis
graminum)]
gi|25009279|sp|Q8K9R5|SSRP_BUCAP RecName: Full=SsrA-binding protein
gi|21623149|gb|AAM67804.1| small protein B [Buchnera aphidicola str. Sg (Schizaphis graminum)]
Length = 163
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/149 (38%), Positives = 88/149 (59%), Gaps = 3/149 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
MS K + ++ N+KA YNY I F++G+VL G EVKS+R+ +VNI +SY +N
Sbjct: 1 MSYKKKRCLKSSIICKNKKAYYNYFIEEVFQSGLVLMGWEVKSIRLGQVNIIESYINNDN 60
Query: 61 -DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118
+E++L NS + P + +N + R RKLLL K EI L + G TLV + +++
Sbjct: 61 LNEMYLYNSIVQPLHTSSNYVSCDSSRKRKLLLHKNEIQYLCNKKNKIGSTLVALSLFW- 119
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDW 147
K K++ LA+GK DKR +EK+ +W
Sbjct: 120 EKSWCKLNFGLAKGKTKIDKRASEKQNEW 148
>gi|317178148|dbj|BAJ55937.1| SsrA-binding protein [Helicobacter pylori F16]
Length = 152
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWRIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|307638095|gb|ADN80545.1| tmRNA-binding protein [Helicobacter pylori 908]
gi|325996696|gb|ADZ52101.1| SsrA-binding protein [Helicobacter pylori 2018]
gi|325998288|gb|ADZ50496.1| ssrA binding protein [Helicobacter pylori 2017]
Length = 152
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN K AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQMEASKERLSIVGLKLYFNQKNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILTDLKHH 149
>gi|15616865|ref|NP_240078.1| SsrA-binding protein [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219681620|ref|YP_002468006.1| SsrA-binding protein [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|219682177|ref|YP_002468561.1| SsrA-binding protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|257471308|ref|ZP_05635307.1| SsrA-binding protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon
pisum)]
gi|11135214|sp|P57342|SSRP_BUCAI RecName: Full=SsrA-binding protein
gi|254778348|sp|B8D947|SSRP_BUCA5 RecName: Full=SsrA-binding protein
gi|254778349|sp|B8D7F1|SSRP_BUCAT RecName: Full=SsrA-binding protein
gi|25317448|pir||D84959 small protein B [imported] - Buchnera sp. (strain APS)
gi|10038929|dbj|BAB12964.1| small protein B [Buchnera aphidicola str. APS (Acyrthosiphon
pisum)]
gi|219621910|gb|ACL30066.1| SsrA-binding protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon
pisum)]
gi|219624463|gb|ACL30618.1| SsrA-binding protein [Buchnera aphidicola str. 5A (Acyrthosiphon
pisum)]
gi|311085992|gb|ADP66074.1| SsrA-binding protein [Buchnera aphidicola str. LL01 (Acyrthosiphon
pisum)]
gi|311087682|gb|ADP67761.1| SsrA-binding protein [Buchnera aphidicola str. JF98 (Acyrthosiphon
pisum)]
Length = 162
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA YNY I + F++G+VL G E+KS+R KVNIS+SY + +E++L N I
Sbjct: 14 IIINKKAYYNYFIEKVFQSGLVLEGWEIKSIRSGKVNISESYIINDRNEMYLCNCLIEPL 73
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+NRF+ P R +KLLL K EI L + G T+V + +++ K K++ LA+G
Sbjct: 74 QMSSNRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWK-KSWCKLEFGLAKG 132
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
K DKR KKR+W+++K +IL++
Sbjct: 133 KTAQDKRINLKKREWEQEKLKILKK 157
>gi|317179620|dbj|BAJ57408.1| SsrA-binding protein [Helicobacter pylori F30]
gi|317182649|dbj|BAJ60433.1| SsrA-binding protein [Helicobacter pylori F57]
Length = 152
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|254779955|ref|YP_003058062.1| SsrA-binding protein [Helicobacter pylori B38]
gi|254001868|emb|CAX30118.1| SsrA-binding protein [Helicobacter pylori B38]
Length = 152
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN K AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQKNRAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|217033925|ref|ZP_03439349.1| hypothetical protein HP9810_870g57 [Helicobacter pylori 98-10]
gi|216943688|gb|EEC23133.1| hypothetical protein HP9810_870g57 [Helicobacter pylori 98-10]
Length = 152
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL
Sbjct: 62 YLDTIHAYYKPNERRERKLLLRKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+ +DKR++ K++ +++ L+ H
Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149
>gi|311087148|gb|ADP67228.1| SsrA-binding protein [Buchnera aphidicola str. JF99 (Acyrthosiphon
pisum)]
Length = 162
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 2/145 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N+KA YNY I + F++G+VL G E+KS+R KVNIS+SY + +E++L N I +
Sbjct: 14 IIINKKAYYNYFIEKVFQSGLVLEGWEIKSIRSGKVNISESYIINDRNEMYLCNCLIEPF 73
Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+NRF+ P R +KLLL K EI L + G T+V + +++ K K++ LA+G
Sbjct: 74 QMSSNRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWK-KSWCKLEFGLAKG 132
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
K DKR KKR+W+++K +IL++
Sbjct: 133 KTAQDKRINLKKREWEQEKLKILKK 157
>gi|119952839|ref|YP_945048.1| SsrA-binding protein [Borrelia turicatae 91E135]
gi|119861610|gb|AAX17378.1| SsrA-binding protein [Borrelia turicatae 91E135]
Length = 149
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KAR+NY I GI+L GTEVKS+++ K + +DS+A+ + DE+WL N +I +
Sbjct: 4 LLLENKKARFNYFIEDKINCGIILKGTEVKSIKLKKFSFNDSFASIKKDEVWLENLHIAK 63
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLLL+K+EI +L ++G TLVP+ IY L K++L + +G
Sbjct: 64 YKEGNIFNHEEIRRRKLLLTKKEIQKLKKFKEKEGYTLVPISIYLK-NSLIKVELGVCKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE K++ + +R ++++
Sbjct: 123 KKLFDKREVLKQKSIKKDLNREIKQY 148
>gi|203283962|ref|YP_002221702.1| SsrA-binding protein [Borrelia duttonii Ly]
gi|203287505|ref|YP_002222520.1| SsrA-binding protein [Borrelia recurrentis A1]
gi|201083405|gb|ACH92996.1| SsrA-binding protein [Borrelia duttonii Ly]
gi|201084725|gb|ACH94299.1| SsrA-binding protein [Borrelia recurrentis A1]
Length = 149
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KAR+NY I GIVL GTEVKS+++ K +DS+A + DEIWL N +I +
Sbjct: 4 ILLENKKARFNYFIEDRLSCGIVLKGTEVKSIKLKKFTFNDSFANIKKDEIWLENLHIAK 63
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL++K+EI +L ++G TLVP+ IY L K++L + +G
Sbjct: 64 YKEGNIFNHEETRRRKLLITKKEIQKLKKFKEKEGYTLVPISIYLK-NSLIKVELGICKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE K++ + R ++++
Sbjct: 123 KKLFDKREILKQKSIKKDLSREIKQY 148
>gi|197294647|ref|YP_001799188.1| SsrA-binding protein [Candidatus Phytoplasma australiense]
gi|171853974|emb|CAM11937.1| SsrA-binding protein [Candidatus Phytoplasma australiense]
Length = 176
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/149 (34%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 12 KVVSDNRKARYNYHIVRS-FEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K ++ N+KA +++ + + + AGI L G EVKS+R+ K+++++SYA +N+EI++ N I
Sbjct: 28 KTIATNKKAVFDFFLEKKKYHAGIKLLGNEVKSIRLGKISLNNSYAYIKNNEIFIVNLSI 87
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+Y + + R +KLLL K+EI ++ ++ G +++P+K+YF K L K+++ LA
Sbjct: 88 LKYPFSCCMQYDENRTKKLLLRKQEIIQIQNKIKTQGFSVIPLKVYF-EKNLVKVEIVLA 146
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK YDKR + K++ + L++ N
Sbjct: 147 KGKKKYDKRNSLKEKAAQLSIQKNLKKIN 175
>gi|224532137|ref|ZP_03672769.1| SsrA-binding protein [Borrelia valaisiana VS116]
gi|224511602|gb|EEF82008.1| SsrA-binding protein [Borrelia valaisiana VS116]
Length = 150
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 92/143 (64%), Gaps = 1/143 (0%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
+N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ +Y +
Sbjct: 9 ENKKAKFNYFIEEKISCGIVLQGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVSKYKE 68
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +GKK
Sbjct: 69 GNIFNHDELRPRKLLIRKQELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEIGICKGKKL 127
Query: 136 YDKRETEKKRDWDRQKHRILREH 158
+DKRE K++ ++ R ++
Sbjct: 128 HDKREILKQKSMKKELSREIKYK 150
>gi|187917915|ref|YP_001883478.1| SsrA-binding protein [Borrelia hermsii DAH]
gi|119860763|gb|AAX16558.1| SsrA-binding protein [Borrelia hermsii DAH]
Length = 149
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/146 (41%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KAR+NY I GIVL GTEVKS+++ K + +DS+A+ + DEIWL N +I +
Sbjct: 4 LLLENKKARFNYFIEDKISCGIVLKGTEVKSIKLKKFSFNDSFASIKKDEIWLENLHIAK 63
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R+RKLL++K+EI +L ++G TL+P+ IY L K++L + +G
Sbjct: 64 YKEGNIFNHEEIRHRKLLITKKEIQKLKKFKEKEGYTLIPISIYLK-NSLIKVELGICKG 122
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK +DKRE K++ + R ++++
Sbjct: 123 KKLFDKREILKQKSIKKDLSREIKQY 148
>gi|223996091|ref|XP_002287719.1| ssrA binding protein [Thalassiosira pseudonana CCMP1335]
gi|220976835|gb|EED95162.1| ssrA binding protein [Thalassiosira pseudonana CCMP1335]
Length = 143
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT--FENDEIWLTNSYIPEYL 74
N+ A NY ++ + E GI L GTEVKS+R K+NI D + L N +I ++
Sbjct: 1 NKLAYRNYEVLETLEVGISLVGTEVKSIRDGKMNIRDGFVKANKNGRSCSLMNVHIGKHS 60
Query: 75 QAN-RFNHYPRRNRKLLLSKREIHRLYAAV-RRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
A F H RR R LLL K+E +L R+ GMT+VP+K Y++ + K ++ L +G
Sbjct: 61 TAGEFFQHEERRPRDLLLHKQEARKLLQKTDRQPGMTIVPLKAYWSDQNKVKFEIGLCRG 120
Query: 133 KKNYDKRETEKKRDWDRQKHRIL 155
K DKR+ ++R+ R+ +R++
Sbjct: 121 KNVRDKRQDIQEREGKREANRMI 143
>gi|12044911|ref|NP_072721.1| SsrA-binding protein [Mycoplasma genitalium G37]
gi|255660188|ref|ZP_05405597.1| SsrA-binding protein [Mycoplasma genitalium G37]
gi|1351076|sp|P47305|SSRP_MYCGE RecName: Full=SsrA-binding protein
gi|1045733|gb|AAC71276.1| SsrA-binding protein [Mycoplasma genitalium G37]
gi|166078888|gb|ABY79506.1| SsrA-binding protein [synthetic Mycoplasma genitalium JCVI-1.0]
Length = 145
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 53/144 (36%), Positives = 92/144 (63%), Gaps = 1/144 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N KA+Y+YH++ S+ AGIVL G+EVK+L + + ++ ++Y +N+E++L IP
Sbjct: 3 ILVNNPKAKYDYHLMESYCAGIVLKGSEVKALSLGQGSLKEAYVFVKNNELFLEQFTIPP 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A NH R +KLLL+K EI ++ ++ ++++P K++F G K+++ LA+
Sbjct: 63 YSFAGPLNHASDRIKKLLLNKHEIKQIINKKQQQSLSVIPSKVFFR-NGKIKVEIWLAKP 121
Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156
KK +DKRET KK+ R+ R
Sbjct: 122 KKKFDKRETIKKKTIRRELEAEYR 145
>gi|294668538|ref|ZP_06733635.1| SsrA-binding protein [Neisseria elongata subsp. glycolytica ATCC
29315]
gi|291309501|gb|EFE50744.1| SsrA-binding protein [Neisseria elongata subsp. glycolytica ATCC
29315]
Length = 130
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+++N+KA ++Y I EAG+VL G EVK++R +V + +SY ++ +L +I
Sbjct: 3 IANNKKAFHDYFIEDELEAGLVLDGWEVKAIRAGRVQLKESYIHWKKGAFYLVGCHITAL 62
Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ P R RKLLL + EI++L V R G TLVP+ +++ +G K+D+ LA+G
Sbjct: 63 PTASTHVKPDPVRQRKLLLKQSEINKLIGKVERSGYTLVPLNMHYK-RGYIKMDIGLAKG 121
Query: 133 KKN 135
K N
Sbjct: 122 KNN 124
>gi|83319425|ref|YP_424090.1| SsrA-binding protein [Mycoplasma capricolum subsp. capricolum ATCC
27343]
gi|123535971|sp|Q2ST23|SSRP_MYCCT RecName: Full=SsrA-binding protein
gi|83283311|gb|ABC01243.1| SsrA-binding protein [Mycoplasma capricolum subsp. capricolum ATCC
27343]
Length = 148
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/145 (37%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N + +
Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKK 64
Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+
Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPIKLYFKND-YVKLEIALAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKR+T KKRD +R++ R +
Sbjct: 124 GKKLHDKRQTIKKRDTERKELRDYK 148
>gi|313665028|ref|YP_004046899.1| SsrA-binding protein [Mycoplasma leachii PG50]
gi|312949229|gb|ADR23825.1| SsrA-binding protein [Mycoplasma leachii PG50]
Length = 148
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 56/145 (38%), Positives = 97/145 (66%), Gaps = 2/145 (1%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N I +
Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNIKK 64
Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+
Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPIKLYFKND-YVKLEIALAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156
GKK +DKR+T KKRD +R++ R +
Sbjct: 124 GKKLHDKRQTIKKRDTERKELRDYK 148
>gi|253722947|pdb|1K8H|A Chain A, Nmr Structure Of Small Protein B (Smpb) From Aquifex
Aeolicus
Length = 133
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72
+++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI
Sbjct: 9 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 68
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G
Sbjct: 69 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 127
Query: 133 KKNYDK 138
KK YD+
Sbjct: 128 KKLYDR 133
>gi|213586341|ref|ZP_03368167.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 127
Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats.
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 1/112 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLV 111
E WL + + + P R RKLLL++RE+ LY + R+G T+V
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVV 127
>gi|309800259|ref|ZP_07694435.1| SsrA-binding protein [Streptococcus infantis SK1302]
gi|308116112|gb|EFO53612.1| SsrA-binding protein [Streptococcus infantis SK1302]
Length = 127
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 58/126 (46%), Positives = 87/126 (69%), Gaps = 1/126 (0%)
Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSK 93
+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Y + N +N P R RKLLL K
Sbjct: 1 MVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPERRRKLLLHK 60
Query: 94 REIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
++I +L + GMTLVP+K+Y G AK+ L LA+GK +YDKRE+ K+R+ DR R
Sbjct: 61 KQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAKGKHDYDKRESIKRREQDRDIAR 119
Query: 154 ILREHN 159
+++ N
Sbjct: 120 VMKSVN 125
>gi|225552289|ref|ZP_03773229.1| SsrA-binding protein [Borrelia sp. SV1]
gi|225371287|gb|EEH00717.1| SsrA-binding protein [Borrelia sp. SV1]
Length = 150
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ +
Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKARKLSFNNSFASIKKEELWLENLHVSK 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + +G
Sbjct: 66 YKEGNIFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE K++ + R ++
Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150
>gi|256026431|ref|ZP_05440265.1| SsrA-binding protein [Fusobacterium sp. D11]
gi|289764443|ref|ZP_06523821.1| small protein B [Fusobacterium sp. D11]
gi|289715998|gb|EFD80010.1| small protein B [Fusobacterium sp. D11]
Length = 123
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/122 (38%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G
Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120
Query: 133 KK 134
KK
Sbjct: 121 KK 122
>gi|51598296|ref|YP_072484.1| SsrA-binding protein [Borrelia garinii PBi]
gi|61216478|sp|Q662X9|SSRP_BORGA RecName: Full=SsrA-binding protein
gi|51572867|gb|AAU06892.1| small protein [Borrelia garinii PBi]
Length = 150
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E WL N ++ +
Sbjct: 6 LLLENKKAKFNYFIEEKVSCGIVLKGTEVKSIKAKKLSFNNSFASIKKEEFWLENLHVSK 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G
Sbjct: 66 YKEGNIFNHDELRPRKLLIKKQELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE K++ + R ++
Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150
>gi|225549320|ref|ZP_03770293.1| SsrA-binding protein [Borrelia burgdorferi 94a]
gi|225370178|gb|EEG99618.1| SsrA-binding protein [Borrelia burgdorferi 94a]
Length = 150
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++
Sbjct: 5 NLLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKISFNNSFASIKKEELWLENLHVS 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y + N FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + +
Sbjct: 65 KYKEGNIFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K++ + R ++
Sbjct: 124 GKKLYDKREILKQKSIKKDLSREIKYK 150
>gi|15594379|ref|NP_212167.1| SsrA-binding protein [Borrelia burgdorferi B31]
gi|195941773|ref|ZP_03087155.1| SsrA-binding protein [Borrelia burgdorferi 80a]
gi|216264604|ref|ZP_03436596.1| SsrA-binding protein [Borrelia burgdorferi 156a]
gi|218249481|ref|YP_002374567.1| SsrA-binding protein [Borrelia burgdorferi ZS7]
gi|221217356|ref|ZP_03588827.1| SsrA-binding protein [Borrelia burgdorferi 72a]
gi|223889068|ref|ZP_03623657.1| SsrA-binding protein [Borrelia burgdorferi 64b]
gi|224532568|ref|ZP_03673191.1| SsrA-binding protein [Borrelia burgdorferi WI91-23]
gi|224533885|ref|ZP_03674470.1| SsrA-binding protein [Borrelia burgdorferi CA-11.2a]
gi|225549681|ref|ZP_03770646.1| SsrA-binding protein [Borrelia burgdorferi 118a]
gi|226322052|ref|ZP_03797577.1| SsrA-binding protein [Borrelia burgdorferi Bol26]
gi|3914985|sp|O51064|SSRP_BORBU RecName: Full=SsrA-binding protein
gi|2687911|gb|AAC66420.1| small protein (smpB) [Borrelia burgdorferi B31]
gi|215981077|gb|EEC21884.1| SsrA-binding protein [Borrelia burgdorferi 156a]
gi|218164669|gb|ACK74730.1| SsrA-binding protein [Borrelia burgdorferi ZS7]
gi|221192634|gb|EEE18850.1| SsrA-binding protein [Borrelia burgdorferi 72a]
gi|223885317|gb|EEF56418.1| SsrA-binding protein [Borrelia burgdorferi 64b]
gi|224512511|gb|EEF82889.1| SsrA-binding protein [Borrelia burgdorferi WI91-23]
gi|224512888|gb|EEF83254.1| SsrA-binding protein [Borrelia burgdorferi CA-11.2a]
gi|225369641|gb|EEG99089.1| SsrA-binding protein [Borrelia burgdorferi 118a]
gi|226232642|gb|EEH31396.1| SsrA-binding protein [Borrelia burgdorferi Bol26]
gi|312148262|gb|ADQ30921.1| SsrA-binding protein [Borrelia burgdorferi JD1]
gi|312149452|gb|ADQ29523.1| SsrA-binding protein [Borrelia burgdorferi N40]
Length = 150
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++
Sbjct: 5 NLLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVS 64
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y + N FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + +
Sbjct: 65 KYKEGNIFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK YDKRE K++ + R ++
Sbjct: 124 GKKLYDKREILKQKSIKKDLSREIKYK 150
>gi|75763002|ref|ZP_00742795.1| SsrA-binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74489503|gb|EAO52926.1| SsrA-binding protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 111
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/105 (49%), Positives = 74/105 (70%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I
Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116
Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY
Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIY 111
>gi|332076248|gb|EGI86714.1| ssrA-binding protein [Streptococcus pneumoniae GA41301]
Length = 127
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 1/126 (0%)
Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSK 93
+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Y + N +N P R RKLLL K
Sbjct: 1 MVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPERRRKLLLHK 60
Query: 94 REIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
++I +L + GMTLVP+K+Y G AK+ L LA+GK +YDKRE+ K+R+ +R R
Sbjct: 61 KQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAKGKHDYDKRESIKRREQNRDIAR 119
Query: 154 ILREHN 159
+++ N
Sbjct: 120 VMKAVN 125
>gi|111114855|ref|YP_709473.1| SsrA-binding protein [Borrelia afzelii PKo]
gi|216263779|ref|ZP_03435773.1| SsrA-binding protein [Borrelia afzelii ACA-1]
gi|123341447|sp|Q0SPD1|SSRP_BORAP RecName: Full=SsrA-binding protein
gi|110890129|gb|ABH01297.1| small protein [Borrelia afzelii PKo]
gi|215979823|gb|EEC20645.1| SsrA-binding protein [Borrelia afzelii ACA-1]
Length = 150
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A + +E+WL N ++ +
Sbjct: 6 LLIENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFAIIKKEELWLENLHVSK 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G
Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE K++ + R ++
Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150
>gi|331703807|ref|YP_004400494.1| Ssra binding protein [Mycoplasma mycoides subsp. capri LC str.
95010]
gi|256383801|gb|ACU78371.1| SsrA-binding protein [Mycoplasma mycoides subsp. capri str. GM12]
gi|256384631|gb|ACU79200.1| SsrA-binding protein [Mycoplasma mycoides subsp. capri str. GM12]
gi|296455875|gb|ADH22110.1| SsrA-binding protein [synthetic Mycoplasma mycoides JCVI-syn1.0]
gi|328802362|emb|CBW54516.1| Ssra binding protein [Mycoplasma mycoides subsp. capri LC str.
95010]
Length = 148
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 98/147 (66%), Gaps = 5/147 (3%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N + +
Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKK 64
Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+
Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPVKLYFKND-YVKLEIALAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKR+T KKRD +R + L+++
Sbjct: 124 GKKLHDKRQTIKKRDTER---KELKDY 147
>gi|42561376|ref|NP_975827.1| SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|61216535|sp|Q6MSC1|SSRP_MYCMS RecName: Full=SsrA-binding protein
gi|42492874|emb|CAE77469.1| SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str.
PG1]
gi|301320454|gb|ADK69097.1| SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str.
Gladysdale]
Length = 148
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 55/147 (37%), Positives = 97/147 (65%), Gaps = 5/147 (3%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N + +
Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKK 64
Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+
Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPVKLYFKND-YVKLEIALAK 123
Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158
GKK +DKR+T KKRD +R + L+ +
Sbjct: 124 GKKLHDKRQTIKKRDTER---KELKNY 147
>gi|319777707|ref|YP_004137358.1| ssra-binding protein [Mycoplasma fermentans M64]
gi|6685989|sp|Q9X498|SSRP_MYCFE RecName: Full=SsrA-binding protein
gi|4587472|gb|AAD25739.1|AF100324_11 SmpB protein [Mycoplasma fermentans]
gi|238810230|dbj|BAH70020.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|318038782|gb|ADV34981.1| SsrA-binding protein [Mycoplasma fermentans M64]
Length = 147
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 4/147 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++SDN++ +NY ++ +EAGI L G EVKS R + V++ +SY F EI+L N+
Sbjct: 2 KIISDNKRGMHNYKVIDKYEAGISLMGWEVKSARANTVSLLNSYCFFRKGEIFLCNAQFK 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGM-TLVPMKIYFNAKGLAKIDLALA 130
+Y R+RKLL+ K EI RL + + + G T++P KIYF+ + KI++AL
Sbjct: 62 QY---MLVKCDETRDRKLLMHKNEIVRLQSKLHKLGHATIIPSKIYFDNRSRIKIEIALV 118
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157
QG K DKRE KKRD +R ++L+
Sbjct: 119 QGMKKTDKREEIKKRDNERYIKKVLKN 145
>gi|219685384|ref|ZP_03540203.1| SsrA-binding protein [Borrelia garinii Far04]
gi|219673157|gb|EED30177.1| SsrA-binding protein [Borrelia garinii Far04]
Length = 150
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ +
Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVSK 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G
Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE K++ + R ++
Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150
>gi|148927709|ref|ZP_01811153.1| SsrA-binding protein [candidate division TM7 genomosp. GTL1]
gi|147886939|gb|EDK72465.1| SsrA-binding protein [candidate division TM7 genomosp. GTL1]
Length = 154
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 7/158 (4%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + V+ NR+A+++Y + G+VL G EV++ R V + +Y T NDE
Sbjct: 1 MKKKTTTSGAVL--NRRAKFDYELGDELAVGLVLNGPEVRAARDGHVQLKGAYVTIRNDE 58
Query: 63 IWLTNSYI---PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
+WL N+ P + + RKLL +++I L ++ G+T+VP+K++ +
Sbjct: 59 LWLNNASFSVKPAQPKRGDARAVDTQPRKLLAHRKQIATLAEQ-KKTGLTIVPLKLFTSG 117
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ K+ +A +GKK YDKRET K+R +R+ R +R
Sbjct: 118 RH-IKLLIAAGKGKKKYDKRETLKRRAQEREAQRAMRR 154
>gi|224534844|ref|ZP_03675413.1| SsrA-binding protein [Borrelia spielmanii A14S]
gi|224513784|gb|EEF84109.1| SsrA-binding protein [Borrelia spielmanii A14S]
Length = 150
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N +I +
Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHISK 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G
Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE K++ + R ++
Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150
>gi|219684764|ref|ZP_03539706.1| SsrA-binding protein [Borrelia garinii PBr]
gi|219671709|gb|EED28764.1| SsrA-binding protein [Borrelia garinii PBr]
Length = 150
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ +N+KA++NY I GIVL GTEVKSL+ K++ ++S+A+ + +E+WL N +I +
Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSLKAKKMSFNNSFASIKKEELWLENLHISK 65
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G
Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKRE K++ + R ++
Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150
>gi|45644711|gb|AAS73099.1| predicted SsrA [uncultured marine gamma proteobacterium EBAC20E09]
Length = 156
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+ A N+ + SF+AGIVL G EVKSLR SKV++ +SY E WL I
Sbjct: 8 LIVKNKNASRNFKLNESFQAGIVLEGWEVKSLRDSKVDVKNSYVNIRKGEAWLIGVKIDI 67
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ N ++RKLLL K+EI ++ G+T V +IY+ L K D+A+ QG
Sbjct: 68 PASLQQENIDTTKSRKLLLHKKEIAKIERLKGEKGLTCVLTRIYWKDN-LIKCDIAMGQG 126
Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157
KK+ D+RE KKRDW+R + RIL+
Sbjct: 127 KKHRDQREDIKKRDWERDQGRILKN 151
>gi|157164927|ref|YP_001467061.1| SsrA-binding protein [Campylobacter concisus 13826]
gi|187611473|sp|A7ZE53|SSRP_CAMC1 RecName: Full=SsrA-binding protein
gi|112800450|gb|EAT97794.1| SsrA-binding protein [Campylobacter concisus 13826]
Length = 151
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 54/148 (36%), Positives = 94/148 (63%), Gaps = 1/148 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K ++ N+KA +++ I+ +FEAGIVL G+EVK+LR + N+ DS+ E++L N++I
Sbjct: 3 KDLAKNKKALHDFSILETFEAGIVLKGSEVKALRAGRANLKDSFVRVIKGELFLLNAHIS 62
Query: 72 EYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ F R RKLL+ +++I +++ V +DG+ LV + +Y + K + K LALA
Sbjct: 63 YLETTHSAFRPNERAARKLLMHRKQIDKIFGQVSQDGLALVVLALYLSDKNIVKARLALA 122
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK +DKRET K+R+ D++ ++ +
Sbjct: 123 KGKNLHDKRETLKRREADKEARAAIKRY 150
>gi|297184052|gb|ADI20172.1| tmRNA-binding protein [uncultured alpha proteobacterium
EB080_L06A09]
Length = 123
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 67/123 (54%), Positives = 89/123 (72%)
Query: 37 TGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREI 96
G+EVK+LR+ NI++SY EN E+WL NSY+ Y QA F H RR RKLL+SK++I
Sbjct: 1 MGSEVKALRIGSANIAESYVDIENGELWLINSYVSLYTQAQNFGHEERRRRKLLVSKKQI 60
Query: 97 HRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
+L+ A R MT+V +K+YFN KG K+ + A+GKK DKRETEKKRDW+RQK R+LR
Sbjct: 61 SKLWQAKGRQAMTIVALKMYFNDKGKVKLLIGTAKGKKQSDKRETEKKRDWNRQKSRLLR 120
Query: 157 EHN 159
+H+
Sbjct: 121 DHS 123
>gi|39938632|ref|NP_950398.1| SsrA-binding protein [Onion yellows phytoplasma OY-M]
gi|61216551|sp|Q6YR70|SSRP_ONYPE RecName: Full=SsrA-binding protein
gi|39721741|dbj|BAD04231.1| tmRNA-binding protein [Onion yellows phytoplasma OY-M]
Length = 152
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 94/149 (63%), Gaps = 2/149 (1%)
Query: 12 KVVSDNRKARYNYHIVRS-FEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + N+KA Y+Y + + ++AGI L G+EVKS+R+ K+N+ +SY +N+E ++ N I
Sbjct: 2 KTIITNKKAFYDYSLEKKKYQAGIKLLGSEVKSIRIGKINLLNSYIHIKNEEAFIVNMTI 61
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+Y + + R +KLLL K EI ++ ++ + ++++P+K+YFN K L K+++AL+
Sbjct: 62 LKYPFSCCLAYDENRTKKLLLQKHEIIQIKNKIKTEKLSVIPLKVYFN-KNLVKLEIALS 120
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKR K D + + L+ N
Sbjct: 121 KGKKQHDKRNALKDFDAKLRIQKTLKNFN 149
>gi|66361446|pdb|1ZC8|K Chain K, Coordinates Of Tmrna, Smpb, Ef-Tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
Length = 130
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 2/123 (1%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72
+++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI
Sbjct: 9 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 68
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G
Sbjct: 69 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 127
Query: 133 KKN 135
KK
Sbjct: 128 KKL 130
>gi|268610170|ref|ZP_06143897.1| SsrA-binding protein [Ruminococcus flavefaciens FD-1]
Length = 124
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 1/124 (0%)
Query: 36 LTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKRE 95
+ GTE+KS+R VN+ DS+ + + E+++ +I Y + N FN P R RKLL+ KRE
Sbjct: 1 MVGTELKSIRQGGVNLKDSWCSIDGGELFVRGMHISPYEKGNIFNRDPLRKRKLLMHKRE 60
Query: 96 IHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
I++L+ V++DG++L+P+ IYF K+ + L +GKK YDKR KRD R+ R +
Sbjct: 61 INKLFGTVKQDGLSLIPLSIYFKDS-RVKMQVGLCKGKKLYDKRADAAKRDAKREIDRNI 119
Query: 156 REHN 159
+ N
Sbjct: 120 KSRN 123
>gi|27904731|ref|NP_777857.1| SsrA-binding protein [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
gi|46396887|sp|Q89AM9|SSRP_BUCBP RecName: Full=SsrA-binding protein
gi|27904128|gb|AAO26962.1| SsrA-binding protein [Buchnera aphidicola str. Bp (Baizongia
pistaciae)]
Length = 158
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K N + NRKA+Y++ I +FEAGIVL G EVKS+R K+NIS+SY + +N E
Sbjct: 1 MKRNSNRKPNEICINRKAKYSFSIKETFEAGIVLLGWEVKSVRCGKINISNSYISLKNGE 60
Query: 63 IWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
++L NS ++N + R +K+LL KREI LY+ + + +T++ + I+F K
Sbjct: 61 MYLVNSQFDPISKSNLYITYECNRIKKILLRKREITYLYSKLYKSHLTIIVLSIFFK-KQ 119
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GK DKRE +K +W + ++R ++
Sbjct: 120 WCKVKIGIAKGKTIKDKREHKKLSEWKKTQNRFVKR 155
>gi|85057854|ref|YP_456770.1| SsrA-binding protein [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789959|gb|ABC65691.1| tmRNA-binding protein [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 152
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 95/149 (63%), Gaps = 2/149 (1%)
Query: 12 KVVSDNRKARYNYHIVRS-FEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + N+KA Y+Y + + ++AGI L G+EVKS+R+ K+N+ +SY +N+E+++ N I
Sbjct: 2 KTIITNKKAFYDYSLEKKKYQAGIKLLGSEVKSIRIGKINLLNSYIHIKNEEVFIVNMTI 61
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+Y + + R +KLLL K EI ++ ++ + ++++P+K+YFN K L K+++ALA
Sbjct: 62 LKYPFSCCLVYDENRTKKLLLQKYEIIQIQKKIKTEKLSVIPLKVYFN-KNLVKLEIALA 120
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159
+GKK +DKR K + + + L+ N
Sbjct: 121 KGKKKHDKRNALKDFNAKLRIQKTLKNFN 149
>gi|151515407|gb|ABS12406.1| SmpB [Mycobacterium chitae]
Length = 103
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 75/104 (72%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+VL GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILDTFEAGVVLQGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHTPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFSE-GKVKVELAL 103
>gi|151515403|gb|ABS12404.1| SmpB [Mycobacterium pyrenivorans]
Length = 103
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLRDGQASLADAFATIDDGEIWLRNLHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L VR +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRREIDNLVGKVRDGNLTLVPLSLYFTG-GRVKVEFAL 103
>gi|151515463|gb|ABS12434.1| SmpB [Mycobacterium aichiense]
gi|151515465|gb|ABS12435.1| SmpB [Mycobacterium petroleophilum]
gi|151515467|gb|ABS12436.1| SmpB [Mycobacterium rhodesiae]
Length = 103
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+VL GTEVKSLR +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGVVLQGTEVKSLREGHASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRSQIDNLVGKIRDGNLTLVPLSLYFSD-GKVKVEFAL 103
>gi|226321137|ref|ZP_03796678.1| SsrA-binding protein [Borrelia burgdorferi 29805]
gi|226233429|gb|EEH32169.1| SsrA-binding protein [Borrelia burgdorferi 29805]
Length = 152
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 54/141 (38%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQAN 77
+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ +Y + N
Sbjct: 13 KKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVSKYKEGN 72
Query: 78 RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYD 137
FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + +GKK YD
Sbjct: 73 IFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKGKKLYD 131
Query: 138 KRETEKKRDWDRQKHRILREH 158
KRE K++ + R ++
Sbjct: 132 KREILKQKSIKKDLSREIKYK 152
>gi|151515461|gb|ABS12433.1| SmpB [Mycobacterium sphagni]
Length = 103
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+VL GTEVKSLR +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILDTYEAGVVLQGTEVKSLREGHASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRSQIDTLVGKIRDGNLTLVPLSLYFSE-GKVKVEFAL 103
>gi|151515377|gb|ABS12391.1| SmpB [Mycobacterium pulveris]
Length = 103
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGI L GTEVKSLR +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGIQLVGTEVKSLREGHASLTDAFATIDDGEVWLRNVHIPEYHHGSWTNHPPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI RL +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRREIDRLIGRIRDGNLTLVPLSLYFSD-GKVKVEFAL 103
>gi|33519995|ref|NP_878827.1| SsrA-binding protein [Candidatus Blochmannia floridanus]
gi|33504341|emb|CAD83234.1| tmRNA-binding protein [Candidatus Blochmannia floridanus]
Length = 148
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 1/146 (0%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ N++ + Y I + E G+VL G EVKS+R K+ I +SY + + E ++ N+
Sbjct: 3 IIQNKRVHHKYFIEKEIETGLVLLGWEVKSIRSRKITIENSYVSLRDQEAYMCNANFQIQ 62
Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133
N P R RKLLL K+E+ L + + T++ + +++ K ++ +A+GK
Sbjct: 63 TNMNVSTPDPTRMRKLLLKKQELSFLTEIMHKKSYTIIILNLFWK-NSWIKANIGIAKGK 121
Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159
K YDKR W ++ I++ N
Sbjct: 122 KKYDKRHIVNTHQWKLEQKHIIKCVN 147
>gi|15828823|ref|NP_326183.1| SsrA-binding protein [Mycoplasma pulmonis UAB CTIP]
gi|22096173|sp|Q98QK9|SSRP_MYCPU RecName: Full=SsrA-binding protein
gi|14089766|emb|CAC13525.1| SMALL PROTEIN B [Mycoplasma pulmonis]
Length = 145
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 3/144 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N++ +Y I+ EAGIVL G EVKS+R S VN+ SY F+ +E++L NSYI
Sbjct: 3 KLITKNKQVFRDYEIIDKLEAGIVLQGWEVKSIRASDVNLKGSYCVFKANELYLINSYIG 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
Y+ R++RKLLL K ++ RL V +++VP+ +Y+N K K ++AL +
Sbjct: 63 LYMAVK---GDERQSRKLLLHKNQLRRLKQKVESQSLSIVPLSLYWNKKSKVKAEIALVR 119
Query: 132 GKKNYDKRETEKKRDWDRQKHRIL 155
G K +DKRE KK + +++ +++
Sbjct: 120 GLKKHDKREKLKKEETNKKLKKLI 143
>gi|151515413|gb|ABS12409.1| SmpB [Mycobacterium psychrotolerans]
Length = 103
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRREIDTLVGKTRDGNLTLVPLSLYFTG-GRVKVEFAL 103
>gi|158562265|gb|ABW74060.1| smpB [Mycobacterium monacense]
Length = 103
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLRNLHIPEYQHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|151515387|gb|ABS12396.1| SmpB [Mycobacterium gilvum]
Length = 103
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILETYEAGVALVGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLL+ +REI L +R +TLVP+ +YF G K++LAL
Sbjct: 61 NRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVELAL 103
>gi|151515411|gb|ABS12408.1| SmpB [Mycobacterium obuense]
Length = 103
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + EI L R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRNEIDTLVGKTRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|151515417|gb|ABS12411.1| SmpB [Mycobacterium chubuense]
Length = 103
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRREIDTLVGKTRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|151515409|gb|ABS12407.1| SmpB [Mycobacterium duvalii]
Length = 103
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILDTYEAGIALVGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|151515405|gb|ABS12405.1| SmpB [Mycobacterium aurum]
Length = 103
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + EI L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRTEIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|209973669|gb|ACJ03966.1| SmpB [Mycobacterium setense]
Length = 105
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 21 RYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFN 80
R+NY I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY N
Sbjct: 1 RHNYMILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTN 60
Query: 81 HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
H PRRNRKLLL + +I L +R +TLVP+ +YF+ G K++
Sbjct: 61 HAPRRNRKLLLHRSQIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVE 105
>gi|151515379|gb|ABS12392.1| SmpB [Mycobacterium thermoresistibile]
Length = 103
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGIALVGTEVKSLREGHASLTDAFATIDDGEVWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I +L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRRQIDQLTGKLRDGNLTLVPLSLYFSE-GKVKVEFAL 103
>gi|151515459|gb|ABS12432.1| SmpB [Mycobacterium confluentis]
Length = 103
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+VL GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGVVLQGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYFHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L VR +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRKQIDNLVGKVRDGNLTLVPLSLYFSE-GKVKVEFAL 103
>gi|151515419|gb|ABS12412.1| SmpB [Mycobacterium austroafricanum]
gi|151515421|gb|ABS12413.1| SmpB [Mycobacterium vanbaalenii PYR-1]
Length = 103
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLL+ +REI L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|151515473|gb|ABS12439.1| SmpB [Mycobacterium hiberniae]
Length = 103
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+ L GTEVKSLR + ++ D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILDVYEAGVALVGTEVKSLRAGQASLVDAFATVDDGEVWLRNMHIPEYQHGTWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +R+I L +R +TLVP+ +YFN G K++ AL
Sbjct: 61 TRKLLLHRRQIDMLIGKIRDGNLTLVPLSVYFNE-GKVKVEFAL 103
>gi|151515451|gb|ABS12428.1| SmpB [Mycobacterium vaccae]
Length = 103
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ +YF G K++LAL
Sbjct: 61 NRKLLLHRKQIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVELAL 103
>gi|151515373|gb|ABS12389.1| SmpB [Mycobacterium novocastrense]
Length = 103
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGIQLVGTEVKSLRDGQASLADAFATVDDGEVWLRNLHIPEYHHGSWTNHVPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I +L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDQLIGRIRDGNLTLVPLSLYFTD-GKVKVEFAL 103
>gi|151515385|gb|ABS12395.1| SmpB [Mycobacterium agri]
Length = 103
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILETFEAGIALVGTEVKSLREGQASLTDAFATVDDGEVWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRKQIDMLTGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103
>gi|151515375|gb|ABS12390.1| SmpB [Mycobacterium elephantis]
Length = 103
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGIQLVGTEVKSLREGQASLADAFATVDDGEVWLRNLHIPEYHHGSWTNHSPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL ++EI RL +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRKEIDRLIGRIRDGNLTLVPLSLYFSD-GKVKVEFAL 103
>gi|167947342|ref|ZP_02534416.1| SsrA-binding protein [Endoriftia persephone 'Hot96_1+Hot96_2']
Length = 148
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+KA+++Y I +EAG+ L G EVKSLR ++N++++Y E +L + I
Sbjct: 16 TIALNKKAKHDYFIEERYEAGVALEGWEVKSLRAGRINLTEAYVIINKGEAYLFGANISP 75
Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117
++ P RNRKLLL + E+++L V R G TLVP +Y
Sbjct: 76 LPTVSSHIQPNPTRNRKLLLHRTELNKLIGLVERKGFTLVPTAMYL 121
>gi|151515391|gb|ABS12398.1| SmpB [Mycobacterium manitobense]
Length = 103
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILETYEAGVALMGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHTPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRSQIDTLIGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103
>gi|151515299|gb|ABS12352.1| SmpB [Mycobacterium florentinum]
Length = 103
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ SFEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILESFEAGVALVGTEVKSLRQGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRRQIDTLIGKIRDGNLTLVPLSLYFSE-GKVKVELAL 103
>gi|151515363|gb|ABS12384.1| SmpB [Mycobacterium murale]
gi|151515365|gb|ABS12385.1| SmpB [Mycobacterium tokaiense]
Length = 103
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FE G+VL GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH RR
Sbjct: 1 ILDTFECGVVLQGTEVKSLREGQASLADAFATVDDGEVWLRNLHIPEYHLGTWTNHATRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLL+ + EI L +R +TLVP+ IYF G K++ AL
Sbjct: 61 NRKLLMHRSEIDNLTGKIRDGNLTLVPLSIYFLD-GKVKVEFAL 103
>gi|54020341|ref|YP_115624.1| SsrA-binding protein [Mycoplasma hyopneumoniae 232]
gi|61216452|sp|Q601U1|SSRP_MYCH2 RecName: Full=SsrA-binding protein
gi|53987514|gb|AAV27715.1| SsrA-binding protein [Mycoplasma hyopneumoniae 232]
Length = 145
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N++A ++Y I+ F AGIVL G EVKS++ +++ ++ F+ E++L+N+ I E
Sbjct: 3 ILIKNKRANFDYEIIDRFTAGIVLLGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y R+RKLL+ K E+ ++ + ++P+ I + K+++ALA+G
Sbjct: 63 YK---GSRGQTDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKG 118
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K DKR K+RD R+ + L+ +
Sbjct: 119 KTKLDKRNLIKERDQKREAAKFLKNY 144
>gi|151515423|gb|ABS12414.1| SmpB [Mycobacterium poriferae]
Length = 103
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLVGRIRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|158562263|gb|ABW74059.1| smpB [Mycobacterium arupense]
Length = 103
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+VL GTEVKSLR + ++ D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILDVYEAGVVLVGTEVKSLRAGQASLVDAFATVDDGEVWLRNMHIPEYHHGTWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +R+I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 TRKLLLHRRQIDMLIGKIRDGNLTLVPLSVYFFE-GKVKVEFAL 103
>gi|71893617|ref|YP_279063.1| SsrA-binding protein [Mycoplasma hyopneumoniae J]
gi|71851744|gb|AAZ44352.1| SsrA-binding protein [Mycoplasma hyopneumoniae J]
Length = 145
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N++A ++Y I+ F AGIVL G EVKS++ +++ ++ F+ E++L+N+ I E
Sbjct: 3 ILIKNKRANFDYEIIDRFTAGIVLFGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y R+RKLL+ K E+ ++ + ++P+ I + K+++ALA+G
Sbjct: 63 YK---GSRGQTDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKG 118
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K DKR K+RD R+ + L+ +
Sbjct: 119 KTKLDKRNLIKERDQKREAAKFLKNY 144
>gi|151515383|gb|ABS12394.1| SmpB [Mycobacterium phlei]
Length = 103
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGIQLVGTEVKSLREGQASLADAFATIDDGEVWLRNVHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I +L VR +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRKQIDQLMGRVRDGNLTLVPLSLYFKD-GKVKVEFAL 103
>gi|72080608|ref|YP_287666.1| SsrA-binding protein [Mycoplasma hyopneumoniae 7448]
gi|71913732|gb|AAZ53643.1| SsrA-binding protein [Mycoplasma hyopneumoniae 7448]
Length = 145
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 4/146 (2%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N++A ++Y I+ F AGIVL G EVKS++ +++ ++ F+ E++L+N+ I E
Sbjct: 3 ILIKNKRANFDYEIIDKFTAGIVLFGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
Y R+RKLL+ K E+ ++ + ++P+ I + K+++ALA+G
Sbjct: 63 YK---GSRGQTDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKG 118
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
K DKR K+RD R+ + L+ +
Sbjct: 119 KTKLDKRNLIKERDQKREVAKFLKNY 144
>gi|151515301|gb|ABS12353.1| SmpB [Mycobacterium simiae]
Length = 103
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
IV SFEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IVESFEAGVALVGTEVKSLRQGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRRQIDTLIGKIRDGNLTLVPLSLYFSE-GKVKVELAL 103
>gi|151515427|gb|ABS12416.1| SmpB [Mycobacterium parafortuitum]
Length = 103
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILETYEAGVALMGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRKQIDNLVGRIRDGNLTLVPLSLYFTG-GKVKVEFAL 103
>gi|151515431|gb|ABS12418.1| SmpB [Mycobacterium fortuitum subsp. acetamidolyticum]
gi|151515433|gb|ABS12419.1| SmpB [Mycobacterium fortuitum subsp. fortuitum]
Length = 103
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSMYFSD-GRVKVEFAL 103
>gi|151515357|gb|ABS12381.1| SmpB [Mycobacterium tusciae]
Length = 103
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
++ +FEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 VLETFEAGVQLVGTEVKSLRDGQASLADAFATIDDGEVWLRNLHIPEYHHGSWTNHTPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R +TLVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRSQIDNLIGRIRDGNLTLVPLSLYFSD-GKVKVELAL 103
>gi|151515295|gb|ABS12350.1| SmpB [Mycobacterium branderi]
Length = 103
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAGIVL GTEVKSLR K ++ D+YAT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILEVFEAGIVLLGTEVKSLREGKASLVDAYATVDDGEVWLRNLHIPEYHHGTWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +R+I L +R + LVP+ +YF+ G K++LAL
Sbjct: 61 TRKLLLHRRQIDGLIGKIRDGNLALVPLSLYFSE-GKVKVELAL 103
>gi|151515401|gb|ABS12403.1| SmpB [Mycobacterium cosmeticum]
Length = 103
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+VL GTEVKSLR + ++ D++AT ++ E+WL N +I EY NH PRR
Sbjct: 1 ILETFEAGVVLVGTEVKSLREGQASLVDAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103
>gi|151515355|gb|ABS12380.1| SmpB [Mycobacterium triviale]
Length = 103
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILEVFEAGVALVGTEVKSLRQGHASLVDAFATVDDGEVWLRNMHIPEYHHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L ++ +TLVP+ +Y ++ G K++ AL
Sbjct: 61 NRKLLLHRSQIDTLVGKIKDGNLTLVPLSVYLSS-GKVKVEFAL 103
>gi|151515359|gb|ABS12382.1| SmpB [Mycobacterium hodleri]
Length = 103
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADSFATVDDGEVWLRNLHIPEYHHGSWTNHSPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R ++LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRGQIDNLIGKIRDGNLSLVPLSLYFTD-GKVKVEFAL 103
>gi|151515381|gb|ABS12393.1| SmpB [Mycobacterium hassiacum]
Length = 103
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGIQLVGTEVKSLREGQASLADAFATIDDGEVWLRNVHIPEYHHGTWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +++I +L VR TLVP+ +YF G K++LAL
Sbjct: 61 KRKLLLHRKQIDQLMGRVRDGNCTLVPLSMYFTD-GKVKVELAL 103
>gi|151515429|gb|ABS12417.1| SmpB [Mycobacterium alvei]
Length = 103
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRSQIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103
>gi|151515399|gb|ABS12402.1| SmpB [Mycobacterium neoaurum]
Length = 103
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+VL GTEVKSLR + ++ D++AT ++ EIWL N +I EY + NH PRR
Sbjct: 1 ILETFEAGVVLVGTEVKSLREGQASLVDAFATVDDGEIWLRNLHIAEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFVD-GKVKVEFAL 103
>gi|151515369|gb|ABS12387.1| SmpB [Mycobacterium brumae]
Length = 103
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+VL GTEVK+LR + ++D++AT ++ E WL N +IPEY NH PRR
Sbjct: 1 ILDTYEAGLVLQGTEVKALREGQALLADAFATIDDGEAWLRNLHIPEYNLGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL ++EI L +R +TLVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRKEIDNLVGKIRDGNLTLVPLSLYFSD-GRVKVELAL 103
>gi|151515445|gb|ABS12425.1| SmpB [Mycobacterium boenickei]
gi|151515447|gb|ABS12426.1| SmpB [Mycobacterium porcinum]
gi|151515449|gb|ABS12427.1| SmpB [Mycobacterium neworleansense]
Length = 103
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103
>gi|151515397|gb|ABS12401.1| SmpB [Mycobacterium frederiksbergense]
Length = 103
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAGIVL GTEVKSLR + +++D++AT ++ E+WL N +I EY + NH PRR
Sbjct: 1 ILDVYEAGIVLVGTEVKSLREGQASLADAFATVDDGEVWLRNLHIAEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLL+ + +I L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLMHRSQIDNLVGKIRDGNLTLVPLSLYFVD-GKVKVEFAL 103
>gi|151515371|gb|ABS12388.1| SmpB [Mycobacterium fallax]
Length = 103
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGIVL GTEVK+LR + +++D++AT ++ EIWL + +IPEY NH PRR
Sbjct: 1 ILDTYEAGIVLQGTEVKALREGQASLADAFATVDDGEIWLRSLHIPEYHLGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L VR +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRKQIDALAGKVRDGNLTLVPLSLYFSD-GRVKVEFAL 103
>gi|294155380|ref|YP_003559764.1| SsrA RNA (tmRNA)-binding protein [Mycoplasma crocodyli MP145]
gi|291600197|gb|ADE19693.1| SsrA RNA (tmRNA)-binding protein [Mycoplasma crocodyli MP145]
Length = 146
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 4/142 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++DN+K R NY I +EAGIVL G EVKS R +KV++++SY + +++WL S+
Sbjct: 2 KIIADNKKERRNYEIFELYEAGIVLEGWEVKSARANKVSLNNSYCSINKEQMWLNESHFS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y R RKLLL K EI ++ +T++P KIYF K+++ALA+
Sbjct: 62 QY---MLVKCNEVRERKLLLHKEEIKKIKFKCESKQLTIIPTKIYFKKD-KIKVEIALAK 117
Query: 132 GKKNYDKRETEKKRDWDRQKHR 153
G K +DKRE K + + +
Sbjct: 118 GLKKFDKREKIAKEEVQKNIKK 139
>gi|151515425|gb|ABS12415.1| SmpB [Mycobacterium brisbanense]
Length = 103
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+ L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103
>gi|151515321|gb|ABS12363.1| SmpB [Mycobacterium bohemicum]
Length = 103
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 74/104 (71%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR+ + +++D++AT ++ E+WL N ++PEY+Q + NH PRR
Sbjct: 1 ILEVFEAGVALQGTEVKSLRLGQASLADAFATVDDGEVWLHNMHVPEYVQGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +++I RL +R + LVPM +YF+ G K++ AL
Sbjct: 61 KRKLLLHRQQIDRLVGKIRDGNLALVPMSVYFSD-GRVKVEFAL 103
>gi|151515297|gb|ABS12351.1| SmpB [Mycobacterium celatum]
Length = 103
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FE GIVL GTEVKSLR K ++ D+YAT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILEVFETGIVLLGTEVKSLREGKASLVDAYATVDDGEVWLRNLHIPEYHHGTWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +R+I L +R + LVP+ +YF+ G K++LAL
Sbjct: 61 TRKLLLHRRQIDGLIGKIRDGNLALVPLSLYFSE-GKVKVELAL 103
>gi|151515389|gb|ABS12397.1| SmpB [Mycobacterium madagascariense]
Length = 103
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGI L GTEVK+LR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILDTFEAGIALMGTEVKALRDGQASLADAFATVDDGEIWLRNVHIPEYHHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L ++ ++LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRSQIDTLIGKIQDGNLSLVPLSLYFLD-GKVKVEFAL 103
>gi|151515453|gb|ABS12429.1| SmpB [Mycobacterium goodii]
Length = 103
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGIVL GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIVLMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ IYF G K++ AL
Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD-GKVKVEFAL 103
>gi|151515393|gb|ABS12399.1| SmpB [Mycobacterium fluoranthenivorans]
gi|151515395|gb|ABS12400.1| SmpB [Mycobacterium hackensackense]
Length = 103
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+VL GTEVKSLR + ++ D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDVYEAGVVLVGTEVKSLREGQASLVDAFATIDDGEIWLRNLHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L +R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRREIDNLVGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103
>gi|151515443|gb|ABS12424.1| SmpB [Mycobacterium septicum]
Length = 103
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL ++EI L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRKEIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103
>gi|151515455|gb|ABS12430.1| SmpB [Mycobacterium piscinum]
gi|151515457|gb|ABS12431.1| SmpB [Mycobacterium smegmatis]
Length = 103
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAGIVL GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILETFEAGIVLMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ IYF G K++ AL
Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD-GKVKVEFAL 103
>gi|151515477|gb|ABS12441.1| SmpB [Mycobacterium lacus]
Length = 103
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
IV FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 IVEVFEAGVALLGTEVKSLREGHASLVDAFATVDDGEIWLRNMHIPEYQHGGWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R + LVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRRQIDTLIGKIRDGNLALVPLSLYFSD-GKVKVELAL 103
>gi|151515469|gb|ABS12437.1| SmpB [Mycobacterium haemophilum]
Length = 103
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
IV FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IVELFEAGVALLGTEVKSLREGHASLVDAFATVDDGEVWLRNMHIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R + LVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFSD-GKVKVEFAL 103
>gi|151515331|gb|ABS12368.1| SmpB [Mycobacterium saskatchewanense]
Length = 103
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I +EAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 IEEVYEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNMYIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R +TLVPM +YF G K++ AL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLTLVPMSLYFTE-GKVKVEFAL 103
>gi|194246722|ref|YP_002004361.1| SsrA-binding protein [Candidatus Phytoplasma mali]
gi|193807079|emb|CAP18515.1| SsrA-binding protein [Candidatus Phytoplasma mali]
Length = 151
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
K+++ N+KA Y+Y + + + AGI L G E+KS+R+ KVNI +++ +N+EI++ N
Sbjct: 2 KKNFKIITVNKKAEYDYFLEKKYYAGIKLLGCEIKSIRLGKVNIQNAHIFIKNNEIFIMN 61
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
I +Y + +R +KLLL+K+EI ++ ++ +T +P+K+Y K LAK+++
Sbjct: 62 MLIDKYKLSCDLFFQEKREKKLLLNKKEIIQIKNKMKIQSLTTIPVKLYL-DKHLAKLEI 120
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHR 153
ALA+GKK YDKR K++ +
Sbjct: 121 ALAKGKKKYDKRNDLKEKTIKLDLKK 146
>gi|151515437|gb|ABS12421.1| SmpB [Mycobacterium farcinogenes]
gi|151515439|gb|ABS12422.1| SmpB [Mycobacterium senegalense]
Length = 103
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSMYFSG-GKVKVEFAL 103
>gi|47459099|ref|YP_015961.1| SsrA-binding protein [Mycoplasma mobile 163K]
gi|61216514|sp|Q6KI26|SSRP_MYCMO RecName: Full=SsrA-binding protein
gi|47458428|gb|AAT27750.1| ssra-binding protein [Mycoplasma mobile 163K]
Length = 142
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++ N+ A +NY I+ ++AG++L G EVKS+R +KV + ++ TF+NDE ++TN +I
Sbjct: 2 KIIIKNKDAFFNYEILEKYKAGLILKGWEVKSIRENKVQLKGAFITFKNDEAYITNMHIS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y+ PR KLLL+K EI + R+ + ++P+ +++ K+++ALA+
Sbjct: 62 QYMSVKGNELEPR---KLLLNKHEIRHIQDKKNRNSLAVIPLNLFW-DNNYIKLEIALAK 117
Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154
GK DKR ++D + +I
Sbjct: 118 GKTKADKRHRILEKDVRKHLKKI 140
>gi|151515333|gb|ABS12369.1| SmpB [Mycobacterium heidelbergense]
Length = 103
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IIELFEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + LVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103
>gi|294660459|ref|NP_853225.2| SsrA-binding protein [Mycoplasma gallisepticum str. R(low)]
gi|298286860|sp|Q7NB37|SSRP_MYCGA RecName: Full=SsrA-binding protein
gi|284812119|gb|AAP56793.2| SsrA-binding protein [Mycoplasma gallisepticum str. R(low)]
gi|284930710|gb|ADC30649.1| SsrA-binding protein [Mycoplasma gallisepticum str. R(high)]
Length = 143
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+++ +N+KA+YNY ++ +EAGI L+G EVKSL + + DSY +E +L N IP
Sbjct: 2 RLLVNNKKAKYNYELLDKYEAGISLSGNEVKSLALHHGKLDDSYVIIRKNEAYLLNLLIP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y R RKLLL K EI ++ ++ + ++P +IYF K+ + LA+
Sbjct: 62 KYKFDTSKVLNETRTRKLLLHKSEILKIDLIKKQHSLVIIPYQIYF-VNNKIKVSIYLAR 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154
KK YDKR+T K+R+ +++ +
Sbjct: 121 PKKRYDKRQTIKEREINKKIRKY 143
>gi|151515347|gb|ABS12376.1| SmpB [Mycobacterium conspicuum]
Length = 103
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +E G+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILEQYECGVALVGTEVKSLREGHASLVDAFATVDDGEIWLRNLHIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R + LVP+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRSQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVELAL 103
>gi|151515303|gb|ABS12354.1| SmpB [Mycobacterium lentiflavum]
Length = 103
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I FEAG+ L GTEVKSLR+ + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IEELFEAGVALVGTEVKSLRLGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +R+I L +R + LVP+ +YF+ G K++ AL
Sbjct: 61 TRKLLLHRRQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103
>gi|151515415|gb|ABS12410.1| SmpB [Mycobacterium chlorophenolicum]
Length = 100
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR
Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
NRKLL+ +REI L R +TLVP+ +YF G K++
Sbjct: 61 NRKLLMHRREIDTLVGKTRDGNLTLVPLSLYFTG-GKVKVE 100
>gi|284931385|gb|ADC31323.1| SsrA-binding protein [Mycoplasma gallisepticum str. F]
Length = 143
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
+++ +N+KA+YNY ++ +EAGI L+G EVKSL + + DSY +E +L N IP
Sbjct: 2 RLLVNNKKAKYNYELLDKYEAGISLSGNEVKSLALHHGKLDDSYVIIRKNEAYLLNLLIP 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y R RKLLL K EI ++ ++ + ++P +IYF KI + LA+
Sbjct: 62 KYKFDTSKVLNETRTRKLLLHKSEILKIDLIKKQQSLVIIPYQIYF-VNNKIKISIYLAR 120
Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154
KK YDKR+T K+R+ +++ +
Sbjct: 121 PKKRYDKRQTIKEREINKKIRKY 143
>gi|151515441|gb|ABS12423.1| SmpB [Mycobacterium peregrinum]
Length = 103
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R +TLVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103
>gi|151515367|gb|ABS12386.1| SmpB [Mycobacterium komossense]
Length = 103
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH RR
Sbjct: 1 ILDVYEAGVALVGTEVKSLREGQASMADAFATVDDGEIWLRNLHIPEYHHGTWTNHAVRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +REI L ++ +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRREIDNLIGKLQDGNLTLVPLSLYFIE-GKVKVEFAL 103
>gi|151515349|gb|ABS12377.1| SmpB [Mycobacterium aubagnense]
Length = 103
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +I EY NH PRR
Sbjct: 1 IIDTYEAGIALVGTEVKSLREGLASLADAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R TLVP+K+YF+ G K++ AL
Sbjct: 61 NRKLLLHRRQIDMLVGKLRDGNFTLVPLKLYFSD-GRVKVEFAL 103
>gi|151515293|gb|ABS12349.1| SmpB [Mycobacterium cookii]
Length = 103
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+VL GTEVKSLR K ++ D+YAT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 ILDVFEAGVVLLGTEVKSLREGKASLVDAYATVDDGEVWLRNLHIPEYHHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL K +I L ++ + LVP+ +YF G K++LAL
Sbjct: 61 NRKLLLHKSQIDALIGKIKDGNLALVPLSLYFFE-GKVKVELAL 103
>gi|151515323|gb|ABS12364.1| SmpB [Mycobacterium malmoense]
Length = 103
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IIELFEAGVALVGTEVKSLREGQASLADAFATVDDGEVWLQNMHIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +R+I L +R + LVP+ +YF+ G K++ AL
Sbjct: 61 KRKLLLHRRQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103
>gi|151515471|gb|ABS12438.1| SmpB [Mycobacterium leprae]
Length = 103
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IIELFEAGVALLGTEVKSLREGHASLADAFATVDSGEVWLRNMHIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R + LVP+ +YF G K++LAL
Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFAE-GKVKVELAL 103
>gi|309804690|ref|ZP_07698755.1| SsrA-binding protein [Lactobacillus iners LactinV 09V1-c]
gi|308166082|gb|EFO68300.1| SsrA-binding protein [Lactobacillus iners LactinV 09V1-c]
Length = 122
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 1/123 (0%)
Query: 36 LTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKRE 95
+TGTE+KS+R ++N+ D Y +L N +I EY Q N +NH P R+R+LLL K+E
Sbjct: 1 MTGTEIKSVRARRINLKDGYVQTYRGSAFLENVHISEYKQGNIYNHDPLRSRRLLLHKKE 60
Query: 96 IHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
I+ L + GMT++P+K+Y G AK+ + + QGKK YDKRET K+RD DR+
Sbjct: 61 INHLQIIQAQQGMTIIPLKVYLK-HGYAKVLIGVGQGKKQYDKRETIKRRDQDRELKSKY 119
Query: 156 REH 158
+
Sbjct: 120 KIR 122
>gi|151515487|gb|ABS12446.1| SmpB [Mycobacterium caprae]
Length = 103
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N++IPEY + NH PRR
Sbjct: 1 IIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++LAL
Sbjct: 61 NRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GKVKVELAL 103
>gi|213622437|ref|ZP_03375220.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
Length = 114
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIH 97
E WL + + + P R RKLLL++RE+
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELD 113
>gi|151515307|gb|ABS12356.1| SmpB [Mycobacterium parmense]
Length = 103
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 IIELFEAGVSLLGTEVKSLREGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R +TL+P+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRHQIDNLIGKIRDGNLTLMPLSLYFSE-GKVKVELAL 103
>gi|151515353|gb|ABS12379.1| SmpB [Mycobacterium phocaicum]
Length = 103
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +I EY NH PRR
Sbjct: 1 IIDTYEAGIALVGTEVKSLREGLASLADAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R TLVP+K+YF+ G K++ AL
Sbjct: 61 NRKLLLHRKQIDTLVGKLRDGNFTLVPLKLYFSD-GRVKVEFAL 103
>gi|151515491|gb|ABS12448.1| SmpB [Mycobacterium kubicae]
Length = 103
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
++ FEAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 VLEVFEAGIALQGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYQHGSWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDALIGKIREGNFALVPLSLYFTE-GKVKVEFAL 103
>gi|151515351|gb|ABS12378.1| SmpB [Mycobacterium mucogenicum]
Length = 103
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +I EY NH PRR
Sbjct: 1 IIDTYEAGIALVGTEVKSLREGLASLADAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I L +R TLVP+K+YF+ G K++ AL
Sbjct: 61 NRKLLLHRKQIDMLVGKLRDGNFTLVPLKLYFSD-GRVKVEFAL 103
>gi|151515329|gb|ABS12367.1| SmpB [Mycobacterium scrofulaceum]
Length = 103
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR + +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 ILEEFEAGVALQGTEVKSLRAGQASLTDAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + LVPM +YF+ G K++ AL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSD-GKVKVEFAL 103
>gi|293363508|ref|ZP_06610264.1| SsrA-binding protein [Mycoplasma alligatoris A21JP2]
gi|292552857|gb|EFF41611.1| SsrA-binding protein [Mycoplasma alligatoris A21JP2]
Length = 144
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/141 (39%), Positives = 87/141 (61%), Gaps = 4/141 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++DN+K + NY I+ + EAGIVL G EVKS R S V+++ SY + + DEIWL +S+
Sbjct: 2 KIIADNKKEKRNYEILETIEAGIVLEGWEVKSARASNVSLNTSYCSIKKDEIWLVDSHFS 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y +R+RKLL+ K+E+ +L +T++P KIYF K+++ALA+
Sbjct: 62 QY---MLVKADEKRDRKLLIHKKELLKLKFKSDSKQLTIIPTKIYFKGD-KIKLEIALAR 117
Query: 132 GKKNYDKRETEKKRDWDRQKH 152
G K YDKR+ K + +Q
Sbjct: 118 GLKKYDKRDKIAKEEVQKQIK 138
>gi|151515495|gb|ABS12450.1| SmpB [Mycobacterium szulgai]
Length = 103
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 IIEVYEAGVALQGTEVKSLREGHASLVDAFATVDDGEIWLRNLHIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLIGKIREGNFALVPLSLYFTE-GKVKVEFAL 103
>gi|158562267|gb|ABW74061.1| smpB [Mycobacterium seoulense]
Length = 103
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 ILEEFEAGVALQGTEVKSLRQGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + LVPM +YF+ G K++LAL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVELAL 103
>gi|151515479|gb|ABS12442.1| SmpB [Mycobacterium bovis]
gi|151515481|gb|ABS12443.1| SmpB [Mycobacterium bovis]
gi|151515483|gb|ABS12444.1| SmpB [Mycobacterium tuberculosis]
gi|151515485|gb|ABS12445.1| SmpB [Mycobacterium africanum]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N++IPEY + NH PRR
Sbjct: 1 IIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GKVKVEFAL 103
>gi|71892321|ref|YP_278055.1| SsrA-binding protein [Candidatus Blochmannia pennsylvanicus str.
BPEN]
gi|71796427|gb|AAZ41178.1| small protein B; putative tmRNA-binding protein [Candidatus
Blochmannia pennsylvanicus str. BPEN]
Length = 154
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 2/146 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS-YI 70
K ++ N+ A + Y I + E+GI L G EVKS R + V I++SY +F N E ++ NS +
Sbjct: 7 KKITQNKHAYHEYFIEKKIESGISLLGWEVKSARSNMVTINNSYVSFYNKEAYICNSIFQ 66
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
Q H R RKLLL K E+ L V + G T + + +Y+ K+++ LA
Sbjct: 67 SNVTQFYNETHNSVRVRKLLLKKNELLFLMEKVNQKGYTAIILDLYWK-NSWIKVNIGLA 125
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156
+GKK YDKR W ++K RIL+
Sbjct: 126 KGKKKYDKRNIIHMHKWKKEKIRILK 151
>gi|151515497|gb|ABS12451.1| SmpB [Mycobacterium gastri]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 IIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNYALVPLSLYFTD-GKVKVEFAL 103
>gi|254755537|ref|ZP_05207570.1| SsrA-binding protein [Bacillus anthracis str. Vollum]
Length = 102
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 67/100 (67%)
Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67
KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N
Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDG 107
+I Y Q NRFNH P R RKLLL K+EI +L A + G
Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLAGASKETG 102
>gi|151515501|gb|ABS12453.1| SmpB [Mycobacterium kansasii]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 IIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTD-GKVKVEFAL 103
>gi|151515335|gb|ABS12370.1| SmpB [Mycobacterium palustre]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
IV FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IVEVFEAGVALQGTEVKSLREGHASLVDAFATVDDGEVWLRNLHIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +++I RL +R + LVPM +YF+ G K++ AL
Sbjct: 61 TRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVEFAL 103
>gi|151515305|gb|ABS12355.1| SmpB [Mycobacterium montefiorense]
Length = 103
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
IV FEAG+ L GTEVKSLR+ + +++D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IVELFEAGVALVGTEVKSLRLGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L +R + LVP+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRAQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103
>gi|151515325|gb|ABS12365.1| SmpB [Mycobacterium nebraskense]
Length = 103
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 ILEEFEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + LVPM +YF+ G K++LAL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVELAL 103
>gi|151515505|gb|ABS12455.1| SmpB [Mycobacterium kansasii]
Length = 103
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 IIEAFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTD-GKVKVEFAL 103
>gi|151515499|gb|ABS12452.1| SmpB [Mycobacterium kansasii]
gi|151515503|gb|ABS12454.1| SmpB [Mycobacterium kansasii]
gi|151515507|gb|ABS12456.1| SmpB [Mycobacterium kansasii]
gi|151515509|gb|ABS12457.1| SmpB [Mycobacterium kansasii]
Length = 103
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 IIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTE-GKVKVEFAL 103
>gi|151515475|gb|ABS12440.1| SmpB [Mycobacterium intermedium]
Length = 103
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
IV+ FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR
Sbjct: 1 IVQVFEAGVALQGTEVKSLRAGHASLVDAFATVDDGEVWLRNLHIPEYRHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
RKLLL +REI L +R LVP+ +YF G K++ AL
Sbjct: 61 TRKLLLHRREIDGLIGKLREGNYALVPLSLYFTE-GKVKVEFAL 103
>gi|151515337|gb|ABS12371.1| SmpB [Mycobacterium interjectum]
Length = 103
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I +EAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 IEELYEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + LVPM +YF+ G K++ AL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVEFAL 103
>gi|151515493|gb|ABS12449.1| SmpB [Mycobacterium asiaticum]
Length = 103
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR
Sbjct: 1 ILEVFEAGVALQGTEVKSLREGHASLVDAFATVDDGEIWLRNVHIPEYRHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +R+I L +R LVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRRQIDTLIGKIREGNYALVPLSMYF-YDGKVKVEFAL 103
>gi|151515339|gb|ABS12372.1| SmpB [Mycobacterium abscessus]
gi|151515341|gb|ABS12373.1| SmpB [Mycobacterium bolletii]
gi|158562261|gb|ABW74058.1| smpB [Mycobacterium massiliense]
Length = 103
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E+WL +IP+Y NH P R
Sbjct: 1 IIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGEVWLRGVHIPQYDHGTWTNHAPLR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I L R +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLD-GKVKVEFAL 103
>gi|151515327|gb|ABS12366.1| SmpB [Mycobacterium parascrofulaceum]
Length = 103
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 ILEEFEAGVALQGTEVKSLRAGHASLTDAFATVDDGEVWLRNLYIPEYRHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + LVPM +YF+ G K++ AL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVEFAL 103
>gi|151515343|gb|ABS12374.1| SmpB [Mycobacterium chelonae]
Length = 103
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E+WL +IP+Y NH P R
Sbjct: 1 ILDVYEAGVQLVGTEVKTLREGKASLVDAFATIDDGEVWLRALHIPQYDHGTWTNHAPLR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I +L VR +TLVP+ +YF G K++LAL
Sbjct: 61 NRKLLLHRAQIDQLVGKVRDGNLTLVPLSLYFLD-GKVKVELAL 103
>gi|151515309|gb|ABS12357.1| SmpB [Mycobacterium avium subsp. paratuberculosis]
gi|151515311|gb|ABS12358.1| SmpB [Mycobacterium avium subsp. avium]
gi|151515313|gb|ABS12359.1| SmpB [Mycobacterium avium subsp. silvaticum]
Length = 103
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 48/104 (46%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAG+ L GTEVKSLR + +++D++AT ++ E+WL N YIPEY + NH PRR
Sbjct: 1 IIETYEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIPEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + L+P+ +YF+ G K++ AL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE-GKVKVEFAL 103
>gi|151515361|gb|ABS12383.1| SmpB [Mycobacterium moriokaense]
Length = 99
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +FEAG+ L GTEVKSLR + ++ D++AT ++ E+WL N +IPEY NH PRR
Sbjct: 1 ILETFEAGVQLVGTEVKSLRDGQASLVDAFATVDDGEVWLRNLHIPEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125
NRKLLL +++I L +R +TLVP+ +YF+ G K+
Sbjct: 61 NRKLLLHRKQIDNLIGRIRDGNLTLVPLSLYFS-NGKVKV 99
>gi|151515345|gb|ABS12375.1| SmpB [Mycobacterium immunogenum]
Length = 103
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E+WL +IP+Y NH P R
Sbjct: 1 IIDVYEAGVQLVGTEVKTLREGKASLVDAFATIDDGEVWLRALHIPQYDHGTWTNHAPLR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL + +I +L VR +TLVP+ +YF G K++ AL
Sbjct: 61 NRKLLLHRAQIDQLVGKVRDGNLTLVPLSLYFLD-GKVKVEFAL 103
>gi|289804841|ref|ZP_06535470.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. AG3]
Length = 108
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++
Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75
Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLS 92
E WL + + + P R RKLLL+
Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLN 108
>gi|328465056|gb|EGF36333.1| SsrA-binding protein [Lactobacillus rhamnosus MTCC 5462]
Length = 116
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K + P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N
Sbjct: 1 MAKKHQQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDG 107
+E WL N +I Y + N FN P RNRKLLL K+EI +L R G
Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQG 106
>gi|148378001|ref|YP_001256877.1| SsrA-binding protein [Mycoplasma agalactiae PG2]
gi|238686693|sp|A5IZI0|SSRP_MYCAP RecName: Full=SsrA-binding protein
gi|148292047|emb|CAL59439.1| SsrA binding protein [Mycoplasma agalactiae PG2]
Length = 147
Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV+S+NRK Y Y I+ EAGI L G EVKS R VN+++SY F+ E++L N+
Sbjct: 2 KVISENRKGLYGYKIIEKHEAGISLLGWEVKSARAQTVNLTNSYIFFKKGELFLCNANFA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR-DGMTLVPMKIYFNAKGLAKIDLALA 130
+Y+ R+RKLL+ K+EI RL + R T+ P KIYFN K K+++AL
Sbjct: 62 KYMLLKVEED---RDRKLLMHKKEIIRLKNKLDRLSSTTIKPTKIYFNNKSKIKVEIALV 118
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
QG DKRE KKRD ++ ++ +
Sbjct: 119 QGMNRADKREDLKKRDNEKYMQKVKSNY 146
>gi|151515435|gb|ABS12420.1| SmpB [Mycobacterium houstonense]
Length = 103
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 1/102 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR
Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
NRKLLL +++I L +R +TLVP+ +YF+ G K+ L
Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSMYFSG-GKVKVSL 101
>gi|295698526|ref|YP_003603181.1| SsrA-binding protein [Candidatus Riesia pediculicola USDA]
gi|291157248|gb|ADD79693.1| SsrA-binding protein [Candidatus Riesia pediculicola USDA]
Length = 162
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 6/159 (3%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
+ + + + N+K+ Y Y I + EAGIVL G E KS+R KV+I+ SY ++ E +
Sbjct: 2 KKNDIKIQKIVLNKKSSYEYTIEKKIEAGIVLYGWETKSIRKKKVDITRSYVEIKDKEAY 61
Query: 65 LTNSYIPEYLQANRFN-----HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119
++ I + +R+RKLLL K EI+ L + + R G T V + +Y+
Sbjct: 62 ISEMNISSEKSFSVNKDLNHLEKNKRSRKLLLKKNEIYFLSSLINRKGYTAVAISLYWK- 120
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ KI++ + +GKK YDKR K+ +W +K R L+
Sbjct: 121 NNICKIEIGIGKGKKQYDKRIKIKENEWKIRKMRTLKNK 159
>gi|218133574|ref|ZP_03462378.1| hypothetical protein BACPEC_01441 [Bacteroides pectinophilus ATCC
43243]
gi|217990949|gb|EEC56955.1| hypothetical protein BACPEC_01441 [Bacteroides pectinophilus ATCC
43243]
Length = 115
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 46 VSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR 105
+ K +I ++Y EN ++++ N I Y + N FN P R ++LLL K EI++L A +
Sbjct: 1 MGKCSIKEAYVRIENGQVYVCNMNITPYEKGNIFNKDPLRPKRLLLHKSEINKLAAQTAQ 60
Query: 106 DGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
G T+VP+++Y N L K+++ LA+GKK YDKR+ K+D R+ + + N
Sbjct: 61 QGYTVVPLQVYLNGS-LIKMEIGLARGKKLYDKRQDIAKKDQRREAEKEFKVRN 113
>gi|161833788|ref|YP_001597984.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri GWSS]
gi|293977899|ref|YP_003543329.1| SsrA-binding protein [Candidatus Sulcia muelleri DMIN]
gi|152206278|gb|ABS30588.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri GWSS]
gi|292667830|gb|ADE35465.1| SsrA-binding protein [Candidatus Sulcia muelleri DMIN]
Length = 146
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 92/143 (64%), Gaps = 4/143 (2%)
Query: 11 KKVVSDNRKARYNYHIVRSFE--AGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68
KK+ +NR+A ++Y ++ ++ AGI L G+EVKS++ + V++++SY + I++ +
Sbjct: 3 KKLNINNRRAYFDYELINKYKFIAGIELLGSEVKSIKNNNVSLNNSYCKLIKNNIYVFDM 62
Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128
YI YL FN P+R +KLLL ++EI+ +Y + + ++P I+ N +G K+
Sbjct: 63 YISNYLLGINFN--PKRVKKLLLKRKEINFIYNKINELKLNIIPTNIFLNERGYIKLIFF 120
Query: 129 LAQGKKNYDKRETEKKRDWDRQK 151
LA+ KKNYDKR++ K + ++R+K
Sbjct: 121 LAKSKKNYDKRQSIKNKYFEREK 143
>gi|291320741|ref|YP_003516006.1| ssrA binding protein [Mycoplasma agalactiae]
gi|290753077|emb|CBH41053.1| SsrA binding protein [Mycoplasma agalactiae]
Length = 147
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
KV+S+NRK Y Y I+ EAGI L G EVKS R VN+++SY F+ E++L N+
Sbjct: 2 KVISENRKGLYGYKIIEKHEAGISLLGWEVKSARAQTVNLTNSYIFFKKGELFLCNANFA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR-DGMTLVPMKIYFNAKGLAKIDLALA 130
+Y+ R+RKLL+ K+EI RL + R T+ P KIYFN K K+++AL
Sbjct: 62 KYMLLKVEED---RDRKLLMHKKEIIRLKNKLDRLSSATIKPTKIYFNNKSKIKVEIALV 118
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
QG DKRE KK+D ++ ++ +
Sbjct: 119 QGMNKADKREDLKKKDNEKYIQKVKSNY 146
>gi|151515315|gb|ABS12360.1| SmpB [Mycobacterium chimaera]
gi|151515317|gb|ABS12361.1| SmpB [Mycobacterium intracellulare]
gi|151515319|gb|ABS12362.1| SmpB [Mycobacterium triplex]
Length = 103
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ SFEAG+ L GTEVKSLR + +++D++AT ++ E+WL N YI EY + NH PRR
Sbjct: 1 IIESFEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIAEYQHGSWTNHDPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
NRKLLL +++I RL +R + L+P+ +YF+ G K++LAL
Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE-GKVKVELAL 103
>gi|151515489|gb|ABS12447.1| SmpB [Mycobacterium microti]
Length = 100
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85
I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N++IPEY + NH PRR
Sbjct: 1 IIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRR 60
Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
NRKLLL +R+I L +R LVP+ +YF G K++
Sbjct: 61 NRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GKVKVE 100
>gi|162450841|ref|YP_001613208.1| SmpB-like protein [Sorangium cellulosum 'So ce 56']
gi|161161423|emb|CAN92728.1| SmpB-like protein [Sorangium cellulosum 'So ce 56']
Length = 139
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSK 93
+VL G+EVK LR ++DS+ EN E +L IP F H +R RKLLL +
Sbjct: 1 MVLLGSEVKMLRDGAAELTDSWCAIENGEAFLKGVNIPVMP-GAAFGHEAKRPRKLLLHE 59
Query: 94 REIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153
EI + +V R+GMT++ ++YF G K ++ALA+GKK DKRE+ K++D R+
Sbjct: 60 SEIEAIRKSVEREGMTVIATRLYFK-NGRVKAEIALAKGKKTVDKRESLKEKDATREARA 118
Query: 154 IL 155
+
Sbjct: 119 AM 120
>gi|145640651|ref|ZP_01796234.1| SsrA-binding protein [Haemophilus influenzae R3021]
gi|145274577|gb|EDK14440.1| SsrA-binding protein [Haemophilus influenzae 22.4-21]
Length = 119
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%)
Query: 44 LRVSKVNISDSYATFENDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAA 102
+R K NISDSY F+N E +L + I + P R RKLLL+KRE+ L+
Sbjct: 1 MRAGKANISDSYVIFKNGEAFLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGK 60
Query: 103 VRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
RDG T+V + +Y+ + AK+ + LA+GKK DKR+ K+R+W K RI++
Sbjct: 61 ANRDGFTIVALSLYWKS-AWAKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 114
>gi|116515095|ref|YP_802724.1| SsrA-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
gi|116256949|gb|ABJ90631.1| tmRNA-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)]
Length = 156
Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 22 YNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNH 81
YN++I + F +GI L G EVKS+R V ISD + +N+E++LTN + +
Sbjct: 17 YNFYIKKKFISGIELQGWEVKSIRAGHVQISDGHVIIKNNEVYLTNVQFQPLIYTSDLKF 76
Query: 82 Y-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRE 140
R RKLLL K+EI L + G T+VP+K+++ K KI +AL +GK DKR+
Sbjct: 77 CLSNRVRKLLLKKKEIFFLKMYSIKKGYTIVPIKLFW-IKSWCKIKIALVKGKSKMDKRQ 135
Query: 141 TEKKRDWDRQKHRILRE 157
++ W ++ I +
Sbjct: 136 DKRNNSWKIERDTIFKR 152
>gi|32490861|ref|NP_871115.1| SsrA-binding protein [Wigglesworthia glossinidia endosymbiont of
Glossina brevipalpis]
gi|25166067|dbj|BAC24258.1| smpB [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 160
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
K ++S N++A+YN +I + EAG+ L G EVKSLR + ++IS SY T ++
Sbjct: 2 KKKNTEKNFLIISRNKRAKYNTYIKKEMEAGLSLKGWEVKSLRSNNISISTSYVTLKSSS 61
Query: 63 IWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121
+LT + + F + RN +LLL K EI+ L+ V+ G ++V + +Y+
Sbjct: 62 AYLTGAVFQSNTNNNMNFIYEKERNIQLLLHKHEINSLFGYVKIKGYSIVVISLYWKYH- 120
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + +A+GKK DKR KKR+W+ +K R+ +++
Sbjct: 121 KAKLKIGIAKGKKKIDKRLEIKKREWEIKKSRLFKKN 157
>gi|239631235|ref|ZP_04674266.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239525700|gb|EEQ64701.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 95
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N
Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59
Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREI 96
+E WL N +I Y + N FN P RNRKLLL KREI
Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKREI 95
>gi|313678889|ref|YP_004056629.1| SsrA-binding protein [Mycoplasma bovis PG45]
gi|312950824|gb|ADR25419.1| SsrA-binding protein [Mycoplasma bovis PG45]
Length = 148
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K++S+NRK Y Y I+ E GI L G EVKS R +N+++SY F+ E++L N+
Sbjct: 2 KIISENRKGLYGYKIIEKHEVGISLLGWEVKSARAQTINLTNSYVFFKKGELFLCNANFA 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR-DGMTLVPMKIYFNAKGLAKIDLALA 130
+Y R+RKLL+ KREI RL + R T+ P+KIYFN K KI++AL
Sbjct: 62 KY---MLLKVDEDRDRKLLMHKREIIRLKNKLDRLSSTTIKPVKIYFNNKSKIKIEIALV 118
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
Q DKRE KK+D ++ +I ++
Sbjct: 119 QSMNKADKREELKKKDNEKYIQKIKSQY 146
>gi|307128673|ref|YP_003880703.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri CARI]
gi|306483135|gb|ADM90005.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri CARI]
Length = 147
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 12 KVVSDNRKARYNYHIVRSFE--AGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
+ N+KA + Y ++ ++ AGIVL G+EVKS++ +KV+I++SY N+ I++ + Y
Sbjct: 2 NLNIKNKKAFFYYELLNKYKFIAGIVLLGSEVKSIKKNKVSINNSYCKLINNNIYVYDMY 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I Y + F+ + L K+EI+++ + ++P KI N +G K+ L
Sbjct: 62 ISNYDFGSNFDSKRIKKIL--LKKKEIYKIKNKINEFKFNIIPTKIILNNRGYIKLIFFL 119
Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157
A+ K YDKR++ K+++ +R+K +++
Sbjct: 120 AKSKTKYDKRQSIKRKEIEREKKKLINN 147
>gi|269114965|ref|YP_003302728.1| SsrA-binding protein [Mycoplasma hominis]
gi|268322590|emb|CAX37325.1| SsrA-binding protein [Mycoplasma hominis ATCC 23114]
Length = 143
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYI 70
K++ N+ + NY I ++E GI L G EVKSLR + +S+ + N+ E+W+ N I
Sbjct: 3 KLIISNKFIKSNYEIDSTYECGISLLGWEVKSLRAKNAKLDNSFCSISNNLELWINNLNI 62
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+Y+Q +R+RKLL+ K EI +L + +VP IY++ K+++ALA
Sbjct: 63 AQYMQVK---GDLKRSRKLLMHKSEILKLKNKQEKFSFVIVPASIYWS-NNHIKVEIALA 118
Query: 131 QGKKNYDKRETEKKRDWDRQKH 152
+ K YDKR E++ + +Q
Sbjct: 119 KALKKYDKRAKERENEIKKQIK 140
>gi|193216544|ref|YP_001999786.1| SsrA-binding protein [Mycoplasma arthritidis 158L3-1]
gi|193001867|gb|ACF07082.1| SsrA-binding protein [Mycoplasma arthritidis 158L3-1]
Length = 143
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWLTNSYIP 71
++ N+ + Y I ++E GI L G E KSLR + S+ ++DE+WL N+YI
Sbjct: 3 LIVKNKFPKLEYEIHSTYECGISLLGWEAKSLRAKNAKLESSFCSISQSDELWLNNAYIA 62
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y P R+RKLL+ + EI +L + +R + +P+ Y+ K+++ALA+
Sbjct: 63 QY---MLVKGDPLRSRKLLMHRHEIKKLRSLQQRLNLIFIPLSFYWRGN-KIKVEIALAK 118
Query: 132 GKKNYDKRETEKKRDWDRQKHRIL 155
+DKRE KK + + +L
Sbjct: 119 HLNKHDKREKIKKDEAKKFIKAVL 142
>gi|71894492|ref|YP_278600.1| SsrA-binding protein [Mycoplasma synoviae 53]
gi|123644077|sp|Q4A5T2|SSRP_MYCS5 RecName: Full=SsrA-binding protein
gi|71851280|gb|AAZ43889.1| SsrA-binding protein [Mycoplasma synoviae 53]
Length = 143
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/126 (41%), Positives = 81/126 (64%), Gaps = 4/126 (3%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+ A+ NY I+++FEAGI L G EVKS R S V + ++Y + DE++L SY
Sbjct: 2 KIIATNKNAKRNYEILKTFEAGIKLEGWEVKSARASSVELKNAYCSIYKDEVFLKESYFK 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+Y+ +NRKLLL K+EI ++ + + ++L+P KIYFN+ L K++LAL +
Sbjct: 62 KYMLLKVEE---TKNRKLLLHKKEILKIKQEL-QKNLSLIPTKIYFNSNSLIKVELALGR 117
Query: 132 GKKNYD 137
G K YD
Sbjct: 118 GLKKYD 123
>gi|319760668|ref|YP_004124606.1| ssrA-binding protein [Candidatus Blochmannia vafer str. BVAF]
gi|318039382|gb|ADV33932.1| ssrA-binding protein [Candidatus Blochmannia vafer str. BVAF]
Length = 153
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
K + N+ + Y I + E+G+VL G EVK++R +V I +SY +F+N E ++ NS+
Sbjct: 6 SKQIIQNKGVYHKYFIEKKIESGLVLLGWEVKAIRSKQVVIDNSYISFQNQEAFIYNSFF 65
Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130
+ N + R RKLLL K+E+ L ++R T+V + +++ K + LA
Sbjct: 66 KKINTNNNPIYDTNRIRKLLLKKQELLFLKEKIKRYKYTIVIINLFWK-NSWIKATIGLA 124
Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158
+GK+N+DKR +W +K +++
Sbjct: 125 KGKRNFDKRNIVHSNEWKSKKQNLVKYR 152
>gi|301116127|ref|XP_002905792.1| hypothetical protein PITG_04079 [Phytophthora infestans T30-4]
gi|262109092|gb|EEY67144.1| hypothetical protein PITG_04079 [Phytophthora infestans T30-4]
Length = 180
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 9/153 (5%)
Query: 10 PKKVVSDN----RKARYNY-HIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64
P KV+ N RKA NY + R + GIVL +EVKSLR ++S ++ F E++
Sbjct: 31 PIKVLCRNQKFVRKAAGNYYEVEREWNLGIVLQPSEVKSLRNRNADLSTAFGAFYKHELF 90
Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124
L + IP + Q P R RKLL ++ E+ +L R L+PM+I G K
Sbjct: 91 LHDLNIPVWRQGLIGRPEPTRVRKLLANRSELKKLQEFANRPNAQLIPMRIEVGNTGWIK 150
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+ +A + D R +RD +R+ R LR+
Sbjct: 151 VIMAACFKRGQIDNR----RRDDEREIKRQLRD 179
>gi|156185998|gb|ABU55317.1| SsrA-binding protein [Callosobruchus chinensis]
gi|156186000|gb|ABU55318.1| SsrA-binding protein [Callosobruchus chinensis]
Length = 103
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 54/103 (52%), Positives = 72/103 (69%)
Query: 35 VLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKR 94
L +EV+SLR KVNISD+Y +N EIWL +I EY A+R NH P+R RKLLL K+
Sbjct: 1 ALLSSEVQSLRERKVNISDAYVIKKNSEIWLHYMHIAEYKAADRKNHKPKRERKLLLHKK 60
Query: 95 EIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYD 137
EI+ L ++ G+T+VP+ IYFN KG AK ++A+ +GKK YD
Sbjct: 61 EINELIGQIKTAGITVVPLSIYFNDKGFAKTEIAIVKGKKLYD 103
>gi|330875247|gb|EGH09396.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race
4]
Length = 79
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQANRFN 80
E WL +I A+
Sbjct: 59 GEAWLMGCHITPLKTASTHV 78
>gi|167957050|ref|ZP_02544124.1| SsrA-binding protein [candidate division TM7 single-cell isolate
TM7c]
gi|169837267|ref|ZP_02870455.1| SsrA-binding protein [candidate division TM7 single-cell isolate
TM7a]
Length = 160
Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 8/161 (4%)
Query: 1 MSLKSRGNPPKKVVSD--NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58
M+ KS+ + K ++ N++A+++YH+ AG+VL G EV++ R V + ++AT
Sbjct: 1 MAKKSKQDK-KPIIPQIVNKRAKFDYHLEEEIVAGMVLNGREVRAARDGHVQLKGAFATI 59
Query: 59 ENDEIWLTNSYIPEYLQAN---RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115
E+WL N+ L +KLL+S+++++ L ++ G T+VP+K+
Sbjct: 60 RGGELWLNNASFSIKLNERGKANQKTVDTEPKKLLVSRKQLNNLIEQ-KQQGFTIVPIKM 118
Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
K K+ ++L +GKK DKRET K+RD +R RIL+
Sbjct: 119 LTGGK-FIKLVISLGKGKKKLDKRETIKRRDIERDAKRILK 158
>gi|1100884|gb|AAA82715.1| hypothetical SmpB [Vibrio cholerae]
Length = 81
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY +
Sbjct: 1 MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60
Query: 60 NDEIWLTNSYIPEYLQANR 78
+ E +++ I QA+
Sbjct: 61 DGEAFISGMTIIPLQQAST 79
>gi|330883909|gb|EGH18058.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race
4]
Length = 90
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++
Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58
Query: 61 DEIWLTNSYIPEYLQANRFN 80
E WL +I A+
Sbjct: 59 GEAWLMGCHITPLKTASTHV 78
>gi|255023119|ref|ZP_05295105.1| SsrA-binding protein [Listeria monocytogenes FSL J1-208]
Length = 97
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 1/96 (1%)
Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122
++L N +I Y Q NR+NH P R RKLLL K++I RL + G ++VP+K+Y G
Sbjct: 1 MFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKD-GY 59
Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
AK+ + +A+GKK YDKR+ K+++ R R +E
Sbjct: 60 AKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKER 95
>gi|284125884|ref|ZP_06386996.1| SsrA-binding protein [Candidatus Poribacteria sp. WGA-A3]
gi|283829178|gb|EFC33604.1| SsrA-binding protein [Candidatus Poribacteria sp. WGA-A3]
Length = 87
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 59/83 (71%)
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
N NH P R R LLL K+EI L V++ G+TLVP+++YFN +G+ K++L LA+GKK+Y
Sbjct: 2 NIMNHEPLRPRGLLLHKKEIRTLTGKVQQKGLTLVPLRMYFNQRGVVKVELGLARGKKHY 61
Query: 137 DKRETEKKRDWDRQKHRILREHN 159
D+RET K+R+ R+ R ++ +
Sbjct: 62 DRRETVKQREAGREMERAMKRAS 84
>gi|153839494|ref|ZP_01992161.1| SmpB protein [Vibrio parahaemolyticus AQ3810]
gi|149746973|gb|EDM57961.1| SmpB protein [Vibrio parahaemolyticus AQ3810]
Length = 80
Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59
M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY
Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMR 60
Query: 60 NDEIWLTNSYIPEYLQANR 78
+ E +++ I Q
Sbjct: 61 DGEAFVSGMTITPLNQHRH 79
>gi|153812428|ref|ZP_01965096.1| hypothetical protein RUMOBE_02827 [Ruminococcus obeum ATCC 29174]
gi|149831590|gb|EDM86677.1| hypothetical protein RUMOBE_02827 [Ruminococcus obeum ATCC 29174]
Length = 92
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 1/92 (1%)
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I Y + N FN P R RKLLL + EI+++ +++ G+TLVP+K+YF L K+++
Sbjct: 1 MHISPYEKGNIFNKDPMRVRKLLLHRYEINKIEGSLQEKGLTLVPLKVYFKDS-LVKLEI 59
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+A+GKK YDKR+ K+D R+ R + N
Sbjct: 60 GVARGKKLYDKRQDIAKKDQRREAEREFKVKN 91
>gi|289609484|emb|CBI60439.1| unnamed protein product [Sordaria macrospora]
Length = 82
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
KK V++NR+AR++Y I +EAGI LTGTEVKSLR + +I++SYA + ++WL NS +
Sbjct: 12 KKTVAENRRARFDYEIDTVYEAGIALTGTEVKSLRFGEGSITESYADVRDGQVWLINSNV 71
Query: 71 P 71
P
Sbjct: 72 P 72
>gi|323941363|gb|EGB37547.1| SsrA-binding protein [Escherichia coli E482]
Length = 88
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
P R RKLLL++RE+ LY V R+G T+V + +Y+ K+ + +A+GKK +
Sbjct: 6 THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAKGKKQH 64
Query: 137 DKRETEKKRDWDRQKHRILRE 157
DKR K+R+W K RI++
Sbjct: 65 DKRSDIKEREWQVDKARIMKN 85
>gi|323221558|gb|EGA05971.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Montevideo str. MB102109-0047]
Length = 88
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
P R RKLLL++RE+ LY + R+G T+V + +Y+ K+ + +A+GKK +
Sbjct: 6 THVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQH 64
Query: 137 DKRETEKKRDWDRQKHRILRE 157
DKR K+R+W K RI++
Sbjct: 65 DKRSDLKEREWQLDKARIMKN 85
>gi|254672339|emb|CBA05517.1| SsrA-binding protein [Neisseria meningitidis alpha275]
Length = 146
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
R RKLLL++ EI++L R G T+VP+ ++F+ +G K+++ LA+GKK +
Sbjct: 65 THIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKGKKQH 123
Query: 137 DKRETEKKRDWDRQKHRILRE 157
DKR++ K+ DW R+K R+++
Sbjct: 124 DKRQSMKEADWKREKQRLIKH 144
>gi|167586876|ref|ZP_02379264.1| SsrA-binding protein [Burkholderia ubonensis Bu]
Length = 76
Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73
+ DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I
Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVIVKNAEIFLIGTHISPL 62
Query: 74 LQANRFNHYP 83
+A+
Sbjct: 63 PEASTHIKPD 72
>gi|325276138|ref|ZP_08141946.1| SsrA-binding protein [Pseudomonas sp. TJI-51]
gi|324098729|gb|EGB96767.1| SsrA-binding protein [Pseudomonas sp. TJI-51]
Length = 96
Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 68 SYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126
S+IP + P R RKLLL+KRE+ RL AAV + G T V + +Y++ L K +
Sbjct: 2 SHIPPLTTASTHVIADPMRTRKLLLNKRELERLEAAVAQKGYTCVALSLYWSKH-LIKCE 60
Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+AL +GKK +DKR+T ++RD +R+ R +R
Sbjct: 61 IALGKGKKEFDKRDTVRERDSNRELQRAVRNK 92
>gi|207108375|ref|ZP_03242537.1| SsrA-binding protein [Helicobacter pylori HPKX_438_CA4C1]
Length = 103
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I
Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61
Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLV 111
+ RR RKLLL K+++ + ++ +++V
Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIV 102
>gi|219128057|ref|XP_002184239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217404470|gb|EEC44417.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 102
Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 19 KARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE--IWLTNSYIPEYLQA 76
+A NY IV + EAGI L GTEVKS+R K+N+ DSY DE L N ++ +
Sbjct: 1 RAYRNYEIVDAIEAGISLVGTEVKSIRNGKLNLRDSYIRPTKDEWSGILYNVHVHIGKHS 60
Query: 77 N---RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115
F H R R LL K E +L + GMT VP+K
Sbjct: 61 QAGAFFQHEETRPRALLAHKAEARKLLQQPEQQGMTSVPLKA 102
>gi|256370743|ref|YP_003108568.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri SMDSEM]
gi|256009535|gb|ACU52895.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri SMDSEM]
Length = 150
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 3/140 (2%)
Query: 12 KVVSDNRKARYNYHIV--RSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69
K++ +N+KA ++Y+++ F AGI L G EVK ++ KV+I +SY N+ I++ + Y
Sbjct: 2 KLIINNKKAGFDYNLLKKEKFLAGIELLGIEVKLIKQKKVSIKNSYCKLINNNIYIFDMY 61
Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129
I P+R RKLLL K+EI+++ ++ + ++P +I N + KI L
Sbjct: 62 ISN-SNIYNTKFSPKRRRKLLLKKKEINQIKKQIKNLNLNIIPTEIVLNNRNFIKIKFFL 120
Query: 130 AQGKKNYDKRETEKKRDWDR 149
A+ KK Y+KR K + ++
Sbjct: 121 AKSKKKYEKRNLRKIKSLEK 140
>gi|325276140|ref|ZP_08141947.1| SsrA-binding protein [Pseudomonas sp. TJI-51]
gi|324098716|gb|EGB96755.1| SsrA-binding protein [Pseudomonas sp. TJI-51]
Length = 58
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K ++ DSY ++
Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLVDSYVLLKD 58
>gi|238762776|ref|ZP_04623745.1| hypothetical protein ykris0001_9550 [Yersinia kristensenii ATCC
33638]
gi|238699081|gb|EEP91829.1| hypothetical protein ykris0001_9550 [Yersinia kristensenii ATCC
33638]
Length = 76
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 84 RRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEK 143
R RKLLL+KRE+ L V RDG T+V + +Y+ K+ + +A+GKK++DKR+ K
Sbjct: 1 MRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK-NAWVKVKIGVAKGKKDHDKRDDIK 59
Query: 144 KRDWDRQKHRILREHN 159
R+W K RI++ N
Sbjct: 60 DREWKLDKARIMKHAN 75
>gi|225011324|ref|ZP_03701779.1| SmpB protein [Flavobacteria bacterium MS024-3C]
gi|225004539|gb|EEG42506.1| SmpB protein [Flavobacteria bacterium MS024-3C]
Length = 93
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYI 70
K+ N++AR+ Y ++ F AGIVL GTE+KS+R+ K NI++S+ F E E+++ N +
Sbjct: 4 KINIRNKRARFEYELLDQFNAGIVLGGTEIKSIRLGKANITESFCEFNERGELFIVNMQV 63
Query: 71 PEYLQANRFNHYPRRNRKLLLSK 93
EY + +NH P+ RKLLL K
Sbjct: 64 EEYSHGSHYNHKPKALRKLLLQK 86
>gi|330875261|gb|EGH09410.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race
4]
Length = 85
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
P R RKLLL+KRE+ +L ++V++ G V + +Y+ L K ++AL +GKK Y
Sbjct: 1 THVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKEH-LIKCEIALGKGKKEY 59
Query: 137 DKRETEKKRDWDRQKHRILREH 158
DKR TE++RD DR+ R +R
Sbjct: 60 DKRHTERERDSDRELQRAVRSK 81
>gi|225012798|ref|ZP_03703232.1| SsrA-binding protein [Flavobacteria bacterium MS024-2A]
gi|225003072|gb|EEG41048.1| SsrA-binding protein [Flavobacteria bacterium MS024-2A]
Length = 94
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
+I EY RFNH P+ RKLLL+K+E+ +LY V+ G+T+VP++++ N G AK+ +
Sbjct: 1 MHIEEYAFGTRFNHRPKAQRKLLLNKKELKKLYKEVKNSGLTIVPLRLFINDDGFAKLRI 60
Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
ALA+GKK YDKRET K RD Q R+ +
Sbjct: 61 ALAKGKKLYDKRETIKDRDNKVQLDRVKKNF 91
>gi|167586875|ref|ZP_02379263.1| SsrA-binding protein [Burkholderia ubonensis Bu]
Length = 64
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 95 EIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154
EI +L V + G TLVP+ ++ G K D+ LA+GKK +DKRETEKKRDW+R+K RI
Sbjct: 1 EIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIGLAKGKKLHDKRETEKKRDWEREKARI 59
Query: 155 LR 156
+R
Sbjct: 60 MR 61
>gi|34764099|ref|ZP_00144976.1| Small protein B [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27886125|gb|EAA23424.1| Small protein B [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 84
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 40/58 (68%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70
++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ +
Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSV 59
>gi|213613352|ref|ZP_03371178.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-2068]
gi|289824498|ref|ZP_06544061.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
Length = 70
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDR 149
+L++RE+ LY + R+G T+V + +Y+ K+ + +A+GKK +DKR K+R+W
Sbjct: 1 MLNQRELDSLYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQHDKRSDLKEREWQL 59
Query: 150 QKHRILRE 157
K RI++
Sbjct: 60 DKARIMKN 67
>gi|124516507|gb|EAY58015.1| tmRNA-binding protein [Leptospirillum rubarum]
Length = 64
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 39/59 (66%)
Query: 100 YAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
VR+ G+T+VP++IY +GL K+++AL +GK DKR+ ++R+ +R+ R+ R
Sbjct: 1 MGLVRQKGLTVVPLRIYSGPRGLFKVEIALVRGKTQGDKRDAIREREANREIQRVFRSK 59
>gi|289803921|ref|ZP_06534550.1| hypothetical protein Salmonellaentericaenterica_05112 [Salmonella
enterica subsp. enterica serovar Typhi str. AG3]
Length = 64
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 96 IHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
+ LY + R+G T+V + +Y+ K+ + +A+GKK +DKR K+R+W K RI+
Sbjct: 1 LDSLYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIM 59
Query: 156 RE 157
+
Sbjct: 60 KN 61
>gi|308190312|ref|YP_003923243.1| hypothetical protein MFE_07940 [Mycoplasma fermentans JER]
gi|307625054|gb|ADN69359.1| hypothetical protein MFE_07940 [Mycoplasma fermentans JER]
Length = 110
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 53 DSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGM-TLV 111
+SY F EI+L N+ +Y R+RKLL+ K EI RL + + + G T++
Sbjct: 2 NSYCFFRKGEIFLCNAQFKQY---MLVKCDETRDRKLLMHKNEIVRLQSKLHKLGHATII 58
Query: 112 PMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155
P KIYF+ + KI++AL QG K DKRE KKRD +R + L
Sbjct: 59 PSKIYFDNRSRIKIEIALVQGMKKTDKREEIKKRDNERYIKKSL 102
>gi|325184525|emb|CCA19017.1| hypothetical protein PITG_04079 [Albugo laibachii Nc14]
Length = 183
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 10 PKKVVSDNRKARYN------YHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63
P +++ N +A N Y++ + + GI L +EVKSLR ++S+S+ATF +E+
Sbjct: 34 PTRILVRN-QAFLNKCRTKVYNVQKEWSLGIQLLPSEVKSLREHTGDLSNSFATFYKNEL 92
Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123
+L IP + P R RKLL + E+ +L + L+P + G
Sbjct: 93 FLHECNIPIWRHGLIGRPEPLRPRKLLARRSELKKLQGFTKDTRAELIPTCVQVGETGWI 152
Query: 124 KIDLALAQ 131
K+ +A +
Sbjct: 153 KVIVAECK 160
>gi|213586761|ref|ZP_03368587.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-0664]
Length = 61
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 99 LYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
+Y + R+G T+V + +Y+ K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 1 MYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 58
>gi|309805834|ref|ZP_07699869.1| SmpB protein [Lactobacillus iners LactinV 03V1-b]
gi|308167743|gb|EFO69887.1| SmpB protein [Lactobacillus iners LactinV 03V1-b]
Length = 65
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62
+K + N ++ N+KA Y+Y I +FEAGI LTGTE+KS+R ++N+ D Y
Sbjct: 1 MKKKENDA---LATNKKASYDYFIKETFEAGIALTGTEIKSVRARRINLKDGYVQTYRGS 57
Query: 63 IWLTNS 68
+
Sbjct: 58 AFFRKC 63
>gi|239631236|ref|ZP_04674267.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239525701|gb|EEQ64702.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 57
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 103 VRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
R G+TLVP+++Y G AK+ + +A+GK NYDKRET K++D +R+ R L+
Sbjct: 2 TARQGVTLVPLRMYLK-HGYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 56
>gi|289824499|ref|ZP_06544062.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar
Typhi str. E98-3139]
Length = 98
Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVN 50
P ++ N++AR+ Y I FEAG+ L G EVK K
Sbjct: 8 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKISARRKSQ 53
>gi|153839495|ref|ZP_01992162.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810]
gi|149746974|gb|EDM57962.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810]
Length = 52
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 108 MTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156
MTL + +Y++ + KI + +A+GKK +DKR K++DW R+K R+++
Sbjct: 1 MTLTALSLYWS-RSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 48
>gi|311086567|gb|ADP66648.1| SsrA-binding protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon
pisum)]
Length = 88
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136
NRF+ P R +KLLL K EI L + G T+V + +++ K K++ LA+GK
Sbjct: 4 NRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWK-KSWCKLEFGLAKGKTAQ 62
Query: 137 DKRETEKKRDWDRQKHRILRE 157
DKR KKR+W+++K +IL++
Sbjct: 63 DKRINLKKREWEQEKLKILKK 83
>gi|331005325|ref|ZP_08328712.1| hypothetical protein IMCC1989_1672 [gamma proteobacterium
IMCC1989]
gi|330420864|gb|EGG95143.1| hypothetical protein IMCC1989_1672 [gamma proteobacterium
IMCC1989]
Length = 40
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVK 42
+ + ++ N++AR++YHI FEAG+ L G EVK
Sbjct: 1 MAKKQKTSDNTIAQNKRARFDYHIEEQFEAGLSLQGWEVK 40
>gi|309805842|ref|ZP_07699877.1| SsrA-binding protein [Lactobacillus iners LactinV 03V1-b]
gi|308167751|gb|EFO69895.1| SsrA-binding protein [Lactobacillus iners LactinV 03V1-b]
Length = 59
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 105 RDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ GMT++P+K+Y G AK+ + + QGKK YDKRET K+RD DR+ +
Sbjct: 7 QQGMTIIPLKVYLK-HGYAKVLIGVGQGKKQYDKRETIKRRDQDRELKSKYKIR 59
>gi|42565345|gb|AAS20954.1| small protein B [Clover phyllody phytoplasma]
Length = 72
Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Query: 90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDR 149
LL K EI ++ ++ + ++++P+K+YFN K L K+++ALA+GKK +DKR K D
Sbjct: 1 LLQKHEIIQIKNKIKTEKLSVIPLKVYFN-KNLVKLEIALAKGKKQHDKRNALKDFDAKL 59
Query: 150 QKHRILREHN 159
+ + L+ N
Sbjct: 60 RIQKTLKNFN 69
>gi|118462231|ref|YP_883154.1| SsrA-binding protein [Mycobacterium avium 104]
gi|118163518|gb|ABK64415.1| SsrA-binding protein [Mycobacterium avium 104]
Length = 53
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 110 LVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
++P+ +YF+ G K++LALA+GKK YDKR+ +RD R+ R L
Sbjct: 1 MMPLSLYFSE-GKVKVELALARGKKAYDKRQDLAQRDAQREVVRQLGRR 48
>gi|94502302|ref|ZP_01308780.1| SsrA-binding protein [Candidatus Sulcia muelleri str. Hc
(Homalodisca coagulata)]
gi|94451141|gb|EAT14088.1| SsrA-binding protein [Candidatus Sulcia muelleri str. Hc
(Homalodisca coagulata)]
Length = 85
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 80 NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKR 139
N P+R +KLLL ++EI+ +Y + + ++P I+ N +G K+ LA+ KKNYDKR
Sbjct: 11 NFNPKRVKKLLLKRKEINFIYNKINELKLNIIPTNIFLNERGYIKLIFFLAKSKKNYDKR 70
Query: 140 ETEKKRDWDRQK 151
++ K + ++R+K
Sbjct: 71 QSIKNKYFEREK 82
>gi|68171282|ref|ZP_00544683.1| SsrA-binding protein [Ehrlichia chaffeensis str. Sapulpa]
gi|67999297|gb|EAM85945.1| SsrA-binding protein [Ehrlichia chaffeensis str. Sapulpa]
Length = 70
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/70 (47%), Positives = 52/70 (74%)
Query: 90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDR 149
+ K++I+++ ++ DG T+VP+ +YFN KG+AK+ + + +GKK +DKRET K RDW+R
Sbjct: 1 MARKKQIYKISGNIKNDGFTVVPLCLYFNDKGIAKVKVVIVKGKKLHDKRETIKTRDWNR 60
Query: 150 QKHRILREHN 159
+K RILR N
Sbjct: 61 EKSRILRGGN 70
>gi|307069558|ref|YP_003878035.1| putative SsrA-binding protein [Candidatus Zinderia insecticola
CARI]
gi|306482818|gb|ADM89689.1| putative SsrA-binding protein [Candidatus Zinderia insecticola
CARI]
Length = 150
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%)
Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72
++ N+K NY+I + EAGI+L G EVK L++ K N+ ++Y FE +EI++ N I
Sbjct: 2 IIFKNKKILLNYYIKKKIEAGIILEGIEVKLLKLKKFNVDNNYIKFEGNEIYIYNLIIEY 61
Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132
+ F +KLLL K EI ++ + G T++ + + K K +A+ +
Sbjct: 62 KKEIKNFKLKKNMKKKLLLHKEEIIKIKTKYLKKGFTII-LYKIYFKKKYIKFKIAIVKR 120
Query: 133 KKNYDK 138
KK Y K
Sbjct: 121 KKEYQK 126
>gi|322649250|gb|EFY45687.1| hypothetical protein SEEM675_21040 [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
Length = 42
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157
K+ + +A+GKK +DKR K+R+W K RI++
Sbjct: 1 KNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 39
>gi|312601244|gb|ADQ90499.1| SsrA-binding protein [Mycoplasma hyopneumoniae 168]
Length = 68
Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 91 LSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQ 150
+ K E+ ++ + ++P+ I + K+++ALA+GK DKR K+RD R+
Sbjct: 1 MHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKGKTKLDKRNLIKERDQKRE 59
Query: 151 KHRILREH 158
+ L+ +
Sbjct: 60 AAKFLKNY 67
>gi|167399733|ref|ZP_02305251.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
gi|167050441|gb|EDR61849.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str.
UG05-0454]
Length = 45
Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
+Y+ K+ + +A+GKK+ DKR+ + R+W K RI++ N
Sbjct: 1 MYWK-NAWVKVKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 44
>gi|403947|gb|AAB01006.1| (M90060); Homology to GenBank Accession numORF-X from STRATPASEA
[Mycoplasma genitalium]
Length = 63
Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 93 KREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152
+I ++ ++ ++++P K++F G K+++ LA+ KK +DKRET KK+ R+
Sbjct: 1 NMKIKQIINKKQQQSLSVIPSKVFFR-NGKIKVEIWLAKPKKKFDKRETIKKKTIRRELE 59
Query: 153 RILR 156
R
Sbjct: 60 AEYR 63
>gi|321311003|ref|YP_004193332.1| SsrA-binding protein [Mycoplasma haemofelis str. Langford 1]
gi|319802847|emb|CBY93493.1| SsrA-binding protein [Mycoplasma haemofelis str. Langford 1]
Length = 134
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71
K + +NR+ Y + +E G+VL K + +V++S S+ ++ EI+L
Sbjct: 5 KELLNNRRDERFYEVFDKYECGLVLNSLTRKQIFNYEVSLSGSHGWIKHGEIFLRGL--- 61
Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
+ N KLLL + EI ++ VR L+P +Y KI L L +
Sbjct: 62 -----------TKENIKLLLHREEIDKISRLVREKKYLLIPKNLYLKNY-KVKITLLLVK 109
Query: 132 --GKKNYDKRETEKKRDWDR 149
K + K E+ K++D R
Sbjct: 110 RVRKTSKAKLESIKRKDEKR 129
>gi|331007786|ref|ZP_08330901.1| hypothetical protein IMCC1989_2062 [gamma proteobacterium IMCC1989]
gi|330418405|gb|EGG92956.1| hypothetical protein IMCC1989_2062 [gamma proteobacterium IMCC1989]
Length = 39
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 29/37 (78%)
Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ K +A+A GKK +DKR++EK++DW RQK R+++ +
Sbjct: 1 MVKCKIAIAGGKKQHDKRQSEKEKDWSRQKQRVMQHN 37
>gi|207109778|ref|ZP_03243940.1| SsrA-binding protein [Helicobacter pylori HPKX_438_CA4C1]
Length = 42
Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158
+ AKI +AL +GKK +DKR++ K++ +++ L+ H
Sbjct: 1 RNRAKIQIALVKGKKLHDKRQSLKEKVLNKEILADLKHH 39
>gi|169836978|ref|ZP_02870166.1| hypothetical protein cdivTM_07706 [candidate division TM7
single-cell isolate TM7a]
Length = 24
Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats.
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 13 VVSDNRKARYNYHIVRSFEAG 33
V++ N+KA ++Y I EAG
Sbjct: 3 VLARNKKAFHDYFIEDKLEAG 23
>gi|169840810|ref|ZP_02873923.1| hypothetical protein cdivTM_26913 [candidate division TM7
single-cell isolate TM7a]
Length = 30
Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHR 153
+++ LA+GKK +DKRE+ K++D R +
Sbjct: 1 MEIGLAKGKKLHDKRESLKRKDIRRDISK 29
>gi|218678620|ref|ZP_03526517.1| hypothetical protein RetlC8_06944 [Rhizobium etli CIAT 894]
Length = 25
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 22/23 (95%)
Query: 136 YDKRETEKKRDWDRQKHRILREH 158
+DKRE+EK+RDW+RQK R+L+++
Sbjct: 2 HDKRESEKERDWNRQKSRLLKDN 24
>gi|116334962|ref|YP_802457.1| hypothetical protein CRP_060 [Candidatus Carsonella ruddii PV]
gi|116235243|dbj|BAF35091.1| hypothetical protein [Candidatus Carsonella ruddii PV]
Length = 116
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75
N+K Y I+++F AG++L ++ ++ + +NI+D YI +
Sbjct: 4 KNKKILTKYFIIKTFIAGMILKSNDILIIKKNILNIND---------------YIIKLSD 48
Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131
N ++ LLL+KRE + + +P+++ F L K+ +++ +
Sbjct: 49 NNINLINKKKKIILLLNKREQNIILYYNYNKNYKCIPIEL-FKLNFLFKLKISIVK 103
>gi|171694401|ref|XP_001912125.1| hypothetical protein [Podospora anserina S mat+]
gi|170947149|emb|CAP73954.1| unnamed protein product [Podospora anserina S mat+]
Length = 1284
Score = 33.6 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158
KK YDKR+ K++ +R+K + RE
Sbjct: 606 KKMYDKRQD--KKEGEREKEALKRER 629
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.314 0.158 0.519
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,090,655,906
Number of Sequences: 13984884
Number of extensions: 114413615
Number of successful extensions: 337116
Number of sequences better than 10.0: 1987
Number of HSP's better than 10.0 without gapping: 1965
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 332721
Number of HSP's gapped (non-prelim): 2180
length of query: 159
length of database: 4,792,584,752
effective HSP length: 121
effective length of query: 38
effective length of database: 3,100,413,788
effective search space: 117815723944
effective search space used: 117815723944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 76 (33.6 bits)