BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780275|ref|YP_003064688.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62] (159 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done >gi|148559187|ref|YP_001258633.1| SsrA-binding protein [Brucella ovis ATCC 25840] gi|166222365|sp|A5VPI6|SSRP_BRUO2 RecName: Full=SsrA-binding protein gi|148370444|gb|ABQ60423.1| SsrA-binding protein [Brucella ovis ATCC 25840] Length = 158 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 95/155 (61%), Positives = 131/155 (84%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEF 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY Q NRFNH PRR RKLL+S+ E+ RL+ +V R+GMT+VP+K+YFN +G A Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRWEMSRLFNSVSREGMTVVPLKLYFNDRGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW+R+K R+LR+ Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157 >gi|85708971|ref|ZP_01040037.1| SsrA-binding protein [Erythrobacter sp. NAP1] gi|85690505|gb|EAQ30508.1| SsrA-binding protein [Erythrobacter sp. NAP1] Length = 184 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 86/159 (54%), Positives = 116/159 (72%), Gaps = 1/159 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + +K V++NR+AR++Y I FEAG+ L GTEVK+LR + I++SYA Sbjct: 25 MARPKPKTFDKQKTVAENRRARFDYAIEEKFEAGLALQGTEVKALRAGEATIAESYAEVR 84 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E+WL NS IPEY NR NH PRR RKLLL+ REI++L+ AV R GMTLVP+ IYFNA Sbjct: 85 DGEVWLINSNIPEYSHGNRLNHEPRRPRKLLLNGREINKLFGAVERKGMTLVPLSIYFNA 144 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AK++LALA+GK+ +DKR + K+RDW R K RI+R+ Sbjct: 145 QGRAKVELALAKGKQAHDKRASIKERDWKRDKARIMRDR 183 >gi|17987583|ref|NP_540217.1| SsrA-binding protein [Brucella melitensis bv. 1 str. 16M] gi|23501534|ref|NP_697661.1| SsrA-binding protein [Brucella suis 1330] gi|62289607|ref|YP_221400.1| SsrA-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82699535|ref|YP_414109.1| SsrA-binding protein [Brucella melitensis biovar Abortus 2308] gi|161618618|ref|YP_001592505.1| SsrA-binding protein [Brucella canis ATCC 23365] gi|163842919|ref|YP_001627323.1| SsrA-binding protein [Brucella suis ATCC 23445] gi|189023861|ref|YP_001934629.1| SmpB protein [Brucella abortus S19] gi|225627149|ref|ZP_03785187.1| SsrA-binding protein [Brucella ceti str. Cudo] gi|225852168|ref|YP_002732401.1| SsrA-binding protein [Brucella melitensis ATCC 23457] gi|237815102|ref|ZP_04594100.1| SsrA-binding protein [Brucella abortus str. 2308 A] gi|254688924|ref|ZP_05152178.1| SsrA-binding protein [Brucella abortus bv. 6 str. 870] gi|254697058|ref|ZP_05158886.1| SsrA-binding protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701436|ref|ZP_05163264.1| SsrA-binding protein [Brucella suis bv. 5 str. 513] gi|254703981|ref|ZP_05165809.1| SsrA-binding protein [Brucella suis bv. 3 str. 686] gi|254707643|ref|ZP_05169471.1| SsrA-binding protein [Brucella pinnipedialis M163/99/10] gi|254709775|ref|ZP_05171586.1| SsrA-binding protein [Brucella pinnipedialis B2/94] gi|254713777|ref|ZP_05175588.1| SsrA-binding protein [Brucella ceti M644/93/1] gi|254718790|ref|ZP_05180601.1| SsrA-binding protein [Brucella sp. 83/13] gi|254729955|ref|ZP_05188533.1| SsrA-binding protein [Brucella abortus bv. 4 str. 292] gi|256031265|ref|ZP_05444879.1| SsrA-binding protein [Brucella pinnipedialis M292/94/1] gi|256044345|ref|ZP_05447249.1| SsrA-binding protein [Brucella melitensis bv. 1 str. Rev.1] gi|256113188|ref|ZP_05454056.1| SsrA-binding protein [Brucella melitensis bv. 3 str. Ether] gi|256159375|ref|ZP_05457157.1| SsrA-binding protein [Brucella ceti M490/95/1] gi|256254673|ref|ZP_05460209.1| SsrA-binding protein [Brucella ceti B1/94] gi|256257172|ref|ZP_05462708.1| SsrA-binding protein [Brucella abortus bv. 9 str. C68] gi|256264320|ref|ZP_05466852.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|256369085|ref|YP_003106593.1| SsrA-binding protein [Brucella microti CCM 4915] gi|260168401|ref|ZP_05755212.1| SsrA-binding protein [Brucella sp. F5/99] gi|260545636|ref|ZP_05821377.1| small protein B [Brucella abortus NCTC 8038] gi|260563697|ref|ZP_05834183.1| small protein B [Brucella melitensis bv. 1 str. 16M] gi|260566771|ref|ZP_05837241.1| small protein B [Brucella suis bv. 4 str. 40] gi|260754410|ref|ZP_05866758.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260757629|ref|ZP_05869977.1| small protein B [Brucella abortus bv. 4 str. 292] gi|260761456|ref|ZP_05873799.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260883438|ref|ZP_05895052.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|261221849|ref|ZP_05936130.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261315137|ref|ZP_05954334.1| small protein B [Brucella pinnipedialis M163/99/10] gi|261317307|ref|ZP_05956504.1| small protein B [Brucella pinnipedialis B2/94] gi|261321518|ref|ZP_05960715.1| small protein B [Brucella ceti M644/93/1] gi|261751975|ref|ZP_05995684.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261754633|ref|ZP_05998342.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|261757862|ref|ZP_06001571.1| SsrA-binding protein [Brucella sp. F5/99] gi|265983770|ref|ZP_06096505.1| small protein B [Brucella sp. 83/13] gi|265988346|ref|ZP_06100903.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|265990759|ref|ZP_06103316.1| small protein B [Brucella melitensis bv. 1 str. Rev.1] gi|265994595|ref|ZP_06107152.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|265997813|ref|ZP_06110370.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|294852012|ref|ZP_06792685.1| SsrA-binding protein [Brucella sp. NVSL 07-0026] gi|297248019|ref|ZP_06931737.1| SsrA-binding protein [Brucella abortus bv. 5 str. B3196] gi|306837509|ref|ZP_07470384.1| SsrA-binding protein [Brucella sp. NF 2653] gi|306842088|ref|ZP_07474760.1| SsrA-binding protein [Brucella sp. BO2] gi|306845248|ref|ZP_07477824.1| SsrA-binding protein [Brucella sp. BO1] gi|54039639|sp|P66859|SSRP_BRUSU RecName: Full=SsrA-binding protein gi|54042226|sp|P66858|SSRP_BRUME RecName: Full=SsrA-binding protein gi|75497092|sp|Q57E95|SSRP_BRUAB RecName: Full=SsrA-binding protein gi|123754519|sp|Q2YMY0|SSRP_BRUA2 RecName: Full=SsrA-binding protein gi|189046819|sp|A9MA22|SSRP_BRUC2 RecName: Full=SsrA-binding protein gi|189046820|sp|B0CKX3|SSRP_BRUSI RecName: Full=SsrA-binding protein gi|238691496|sp|B2SAC5|SSRP_BRUA1 RecName: Full=SsrA-binding protein gi|254778347|sp|C0RHY9|SSRP_BRUMB RecName: Full=SsrA-binding protein gi|17983289|gb|AAL52481.1| small protein b [Brucella melitensis bv. 1 str. 16M] gi|23347444|gb|AAN29576.1| SsrA-binding protein [Brucella suis 1330] gi|62195739|gb|AAX74039.1| SmpB, SsrA-binding protein [Brucella abortus bv. 1 str. 9-941] gi|82615636|emb|CAJ10623.1| SmpB protein [Brucella melitensis biovar Abortus 2308] gi|161335429|gb|ABX61734.1| SsrA-binding protein [Brucella canis ATCC 23365] gi|163673642|gb|ABY37753.1| SsrA-binding protein [Brucella suis ATCC 23445] gi|189019433|gb|ACD72155.1| SmpB protein [Brucella abortus S19] gi|225617984|gb|EEH15028.1| SsrA-binding protein [Brucella ceti str. Cudo] gi|225640533|gb|ACO00447.1| SsrA-binding protein [Brucella melitensis ATCC 23457] gi|237789939|gb|EEP64149.1| SsrA-binding protein [Brucella abortus str. 2308 A] gi|255999245|gb|ACU47644.1| SsrA-binding protein [Brucella microti CCM 4915] gi|260097043|gb|EEW80918.1| small protein B [Brucella abortus NCTC 8038] gi|260153713|gb|EEW88805.1| small protein B [Brucella melitensis bv. 1 str. 16M] gi|260156289|gb|EEW91369.1| small protein B [Brucella suis bv. 4 str. 40] gi|260667947|gb|EEX54887.1| small protein B [Brucella abortus bv. 4 str. 292] gi|260671888|gb|EEX58709.1| conserved hypothetical protein [Brucella abortus bv. 2 str. 86/8/59] gi|260674518|gb|EEX61339.1| conserved hypothetical protein [Brucella abortus bv. 6 str. 870] gi|260872966|gb|EEX80035.1| conserved hypothetical protein [Brucella abortus bv. 9 str. C68] gi|260920433|gb|EEX87086.1| conserved hypothetical protein [Brucella ceti B1/94] gi|261294208|gb|EEX97704.1| small protein B [Brucella ceti M644/93/1] gi|261296530|gb|EEY00027.1| small protein B [Brucella pinnipedialis B2/94] gi|261304163|gb|EEY07660.1| small protein B [Brucella pinnipedialis M163/99/10] gi|261737846|gb|EEY25842.1| SsrA-binding protein [Brucella sp. F5/99] gi|261741728|gb|EEY29654.1| conserved hypothetical protein [Brucella suis bv. 5 str. 513] gi|261744386|gb|EEY32312.1| conserved hypothetical protein [Brucella suis bv. 3 str. 686] gi|262552281|gb|EEZ08271.1| conserved hypothetical protein [Brucella ceti M490/95/1] gi|262765708|gb|EEZ11497.1| conserved hypothetical protein [Brucella melitensis bv. 3 str. Ether] gi|263001543|gb|EEZ14118.1| small protein B [Brucella melitensis bv. 1 str. Rev.1] gi|263094594|gb|EEZ18392.1| conserved hypothetical protein [Brucella melitensis bv. 2 str. 63/9] gi|264660543|gb|EEZ30804.1| conserved hypothetical protein [Brucella pinnipedialis M292/94/1] gi|264662362|gb|EEZ32623.1| small protein B [Brucella sp. 83/13] gi|294820601|gb|EFG37600.1| SsrA-binding protein [Brucella sp. NVSL 07-0026] gi|297175188|gb|EFH34535.1| SsrA-binding protein [Brucella abortus bv. 5 str. B3196] gi|306274407|gb|EFM56214.1| SsrA-binding protein [Brucella sp. BO1] gi|306287838|gb|EFM59261.1| SsrA-binding protein [Brucella sp. BO2] gi|306407401|gb|EFM63605.1| SsrA-binding protein [Brucella sp. NF 2653] gi|326408669|gb|ADZ65734.1| SmpB protein [Brucella melitensis M28] gi|326538394|gb|ADZ86609.1| SsrA-binding protein [Brucella melitensis M5-90] Length = 158 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 96/155 (61%), Positives = 132/155 (85%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEF 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G A Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW+R+K R+LR+ Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157 >gi|254693406|ref|ZP_05155234.1| SsrA-binding protein [Brucella abortus bv. 3 str. Tulya] gi|261213656|ref|ZP_05927937.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] gi|260915263|gb|EEX82124.1| conserved hypothetical protein [Brucella abortus bv. 3 str. Tulya] Length = 158 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 96/155 (61%), Positives = 131/155 (84%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA FE+ E Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYARFEDGEF 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G A Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW+R+K R+LR+ Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157 >gi|239831483|ref|ZP_04679812.1| SsrA-binding protein [Ochrobactrum intermedium LMG 3301] gi|239823750|gb|EEQ95318.1| SsrA-binding protein [Ochrobactrum intermedium LMG 3301] Length = 158 Score = 197 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 98/155 (63%), Positives = 132/155 (85%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FEN E Sbjct: 3 KPKNSPVRKIIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQSNIAESYASFENGEF 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY Q NRFNH PRR RKLL+SKRE+ RL+ +V R+GMT+VP+K+YFN +G A Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLISKREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW+R+K R+LR+ Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157 >gi|209548593|ref|YP_002280510.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226706529|sp|B5ZW65|SSRP_RHILW RecName: Full=SsrA-binding protein gi|209534349|gb|ACI54284.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 159 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 103/158 (65%), Positives = 131/158 (82%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KVV++NRKAR+NY I+ ++EAG+VL GTEVKSLR K NI++SYA+ E Sbjct: 1 MAPKGSQRVVNKVVAENRKARFNYEIIDTYEAGLVLMGTEVKSLREGKANIAESYASDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R+GMTL+P+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNREGMTLIPLKIYFNDR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+++ Sbjct: 121 GRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 158 >gi|86357020|ref|YP_468912.1| SsrA-binding protein [Rhizobium etli CFN 42] gi|190891065|ref|YP_001977607.1| ssrA-binding (tmRNA-binding) protein [Rhizobium etli CIAT 652] gi|218514125|ref|ZP_03510965.1| SsrA-binding protein [Rhizobium etli 8C-3] gi|123512471|sp|Q2KAF1|SSRP_RHIEC RecName: Full=SsrA-binding protein gi|238692511|sp|B3PUN0|SSRP_RHIE6 RecName: Full=SsrA-binding protein gi|86281122|gb|ABC90185.1| ssrA-binding (tmRNA-binding) protein [Rhizobium etli CFN 42] gi|190696344|gb|ACE90429.1| ssrA-binding (tmRNA-binding) protein [Rhizobium etli CIAT 652] gi|327191316|gb|EGE58349.1| SsrA-binding protein [Rhizobium etli CNPAF512] Length = 159 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 104/158 (65%), Positives = 132/158 (83%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KVV++NRKAR+NY I+ ++EAG+VL GTEVKSLR K NI++SYA+ E+ Sbjct: 1 MAPKGSQRVVNKVVAENRKARFNYEIIDTYEAGLVLKGTEVKSLREGKANIAESYASDED 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R+GMTLVP+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNREGMTLVPLKIYFNDR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+++ Sbjct: 121 GRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 158 >gi|256060776|ref|ZP_05450938.1| SsrA-binding protein [Brucella neotomae 5K33] gi|261324766|ref|ZP_05963963.1| conserved hypothetical protein [Brucella neotomae 5K33] gi|261300746|gb|EEY04243.1| conserved hypothetical protein [Brucella neotomae 5K33] Length = 158 Score = 196 bits (500), Expect = 5e-49, Method: Composition-based stats. Identities = 95/155 (61%), Positives = 132/155 (85%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++S+A+FE+ E Sbjct: 3 KPKNSPARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESHASFEDGEF 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G A Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW+R+K R+LR+ Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLLRDR 157 >gi|241203881|ref|YP_002974977.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857771|gb|ACS55438.1| SsrA-binding protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 159 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 103/158 (65%), Positives = 130/158 (82%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K+V++NRKAR+NY I+ ++EAGIVL GTEVKSLR K NI++SYA+ E Sbjct: 1 MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGIVLMGTEVKSLREGKANIAESYASDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +A+ R+GMTL+P+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAINREGMTLIPLKIYFNDR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+ H Sbjct: 121 GRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKAH 158 >gi|61216610|sp|Q7X2N6|SSRP_SPHEL RecName: Full=SsrA-binding protein gi|32188217|gb|AAP46182.1| small protein B [Sphingomonas elodea] Length = 160 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 83/147 (56%), Positives = 119/147 (80%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K V++NR+AR++Y I +++EAG+VLTGTEVKSLR + +I+++YA +++ +WL N+ IP Sbjct: 13 KTVAENRRARFDYFIEQTYEAGLVLTGTEVKSLRFGEGSIAEAYAEVKDEXVWLVNANIP 72 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 E+ NRFNH +R RKLLL +REI++L+ AV R+GMTLVP+ +YFN KG AK++LALA+ Sbjct: 73 EFSHGNRFNHEAKRPRKLLLHEREINKLHGAVAREGMTLVPLSVYFNGKGRAKVELALAK 132 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRET K+RDW R++ RILR+ Sbjct: 133 GKKTHDKRETIKERDWKREQSRILRDR 159 >gi|153009967|ref|YP_001371182.1| SsrA-binding protein [Ochrobactrum anthropi ATCC 49188] gi|166223233|sp|A6X299|SSRP_OCHA4 RecName: Full=SsrA-binding protein gi|151561855|gb|ABS15353.1| SsrA-binding protein [Ochrobactrum anthropi ATCC 49188] Length = 158 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 98/155 (63%), Positives = 132/155 (85%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FEN E Sbjct: 3 KPKNSPVRKIIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQSNIAESYASFENGEF 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY Q NRFNH PRR RKLL+SKRE+ RL+ +V RDGMT+VP+K+YFN +G A Sbjct: 63 WLINSYIPEYTQGNRFNHEPRRLRKLLISKREMSRLFNSVSRDGMTVVPLKLYFNDRGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW+R+K R++R+ Sbjct: 123 KLELALARGKKTHDKRETEKKRDWNREKARLMRDK 157 >gi|159184582|ref|NP_354048.2| SsrA-binding protein [Agrobacterium tumefaciens str. C58] gi|22096160|sp|Q8UGL2|SSRP_AGRT5 RecName: Full=SsrA-binding protein gi|159139885|gb|AAK86833.2| SSRA-binding protein [Agrobacterium tumefaciens str. C58] Length = 160 Score = 196 bits (499), Expect = 9e-49, Method: Composition-based stats. Identities = 104/159 (65%), Positives = 133/159 (83%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K+V++NRKAR+NY I+ ++EAG+VLTGTEVKSLR K NI++SYA+ E Sbjct: 1 MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DEIWL NS++PEYLQANRFNH PRR RKLLL+KREI+RL A + RDGMTLVP+K+YFN K Sbjct: 61 DEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAGINRDGMTLVPLKVYFNEK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK++LALA+GKK +DKRETEK+RDW+RQK R+L+ ++ Sbjct: 121 GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNS 159 >gi|254717166|ref|ZP_05178977.1| SsrA-binding protein [Brucella ceti M13/05/1] Length = 151 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 95/150 (63%), Positives = 129/150 (86%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P +K++++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E WL NS Sbjct: 1 PARKMIAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEFWLINS 60 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 YIPEY Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G AK++LA Sbjct: 61 YIPEYTQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRAKLELA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK +DKRETEKKRDW+R+K R+LR+ Sbjct: 121 LARGKKTHDKRETEKKRDWNREKARLLRDR 150 >gi|325292405|ref|YP_004278269.1| SsrA-binding protein [Agrobacterium sp. H13-3] gi|325060258|gb|ADY63949.1| SsrA-binding protein [Agrobacterium sp. H13-3] Length = 160 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 103/159 (64%), Positives = 133/159 (83%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K+V++NRKAR+NY I+ ++EAG+VLTGTEVK+LR K NI++SYA+ E Sbjct: 1 MAPKGSQRVVNKIVAENRKARFNYEIIDTYEAGLVLTGTEVKALREGKANIAESYASDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DEIWL NS++PEYLQANRFNH PRR RKLLL+KREI+RL A + R+GMTLVP+K+YFN K Sbjct: 61 DEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRAGINREGMTLVPLKVYFNEK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK++LALA+GKK +DKRETEK+RDW+RQK R+L+ +N Sbjct: 121 GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLKGNN 159 >gi|254780275|ref|YP_003064688.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62] gi|254039952|gb|ACT56748.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 159 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 159/159 (100%), Positives = 159/159 (100%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN Sbjct: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK Sbjct: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN Sbjct: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 >gi|118587948|ref|ZP_01545358.1| SsrA-binding protein [Stappia aggregata IAM 12614] gi|118439570|gb|EAV46201.1| SsrA-binding protein [Stappia aggregata IAM 12614] Length = 159 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 96/159 (60%), Positives = 124/159 (77%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + G+P + ++SDNRKAR+NY I + EAGI L GTEVKSLR K NI++SYA Sbjct: 1 MAPRKGGDPGRTIISDNRKARFNYEIEDTLEAGIELKGTEVKSLRNGKANIAESYAAEHQ 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIW+ N YIPEYLQANRFNH PRR RKLLL KREI +L AV+++G T+VP+K+YFN + Sbjct: 61 GEIWIYNVYIPEYLQANRFNHEPRRPRKLLLHKREIGKLAGAVQKEGKTIVPLKLYFNEQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK++LALA+GKK +DKRETEKKRDW R+K R+++ + Sbjct: 121 GRAKLELALARGKKLHDKRETEKKRDWQREKSRLMKNFS 159 >gi|328543508|ref|YP_004303617.1| SsrA-binding protein [Polymorphum gilvum SL003B-26A1] gi|326413252|gb|ADZ70315.1| SsrA-binding protein [Polymorphum gilvum SL003B-26A1] Length = 159 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 99/157 (63%), Positives = 123/157 (78%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ G + VV+DNRKAR+NY I FEAGI L GTEVKSLR K NI DSYA N Sbjct: 1 MAAKNGGPAGRSVVADNRKARFNYEIEEVFEAGIELKGTEVKSLRTGKANIQDSYAAEHN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYIPEYLQANRFNH PRR R+LLL KR+I +L +AV+++G T+VP+K+YFN + Sbjct: 61 GELWLYNSYIPEYLQANRFNHEPRRPRRLLLHKRQIGKLASAVQKEGKTIVPLKLYFNEQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK++LALA+GKK +DKRETEK RDW R+K R+L+ Sbjct: 121 GRAKLELALARGKKLHDKRETEKARDWQREKSRLLKN 157 >gi|15964813|ref|NP_385166.1| SsrA-binding protein [Sinorhizobium meliloti 1021] gi|307309701|ref|ZP_07589353.1| SsrA-binding protein [Sinorhizobium meliloti BL225C] gi|307320699|ref|ZP_07600111.1| SsrA-binding protein [Sinorhizobium meliloti AK83] gi|22096167|sp|Q92R54|SSRP_RHIME RecName: Full=SsrA-binding protein gi|15073992|emb|CAC45639.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021] gi|306893626|gb|EFN24400.1| SsrA-binding protein [Sinorhizobium meliloti AK83] gi|306899913|gb|EFN30536.1| SsrA-binding protein [Sinorhizobium meliloti BL225C] Length = 159 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 102/158 (64%), Positives = 129/158 (81%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KKVV++NRKAR+NY IV ++EAG+VLTGTEVKSLR K NI++SYAT E Sbjct: 1 MAPKGSERTVKKVVAENRKARFNYEIVDTYEAGLVLTGTEVKSLREGKANIAESYATDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH RR RKLLLSKRE++RL AV R+GM+L+P++IYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHETRRRRKLLLSKREVNRLQGAVNREGMSLIPLRIYFNER 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LAL +GKK +DKRET K+RDW+RQK+R+L+E Sbjct: 121 GRVKLELALGKGKKLHDKRETSKERDWNRQKNRLLKER 158 >gi|227821395|ref|YP_002825365.1| SsrA-binding protein [Sinorhizobium fredii NGR234] gi|254778375|sp|C3M8R6|SSRP_RHISN RecName: Full=SsrA-binding protein gi|227340394|gb|ACP24612.1| putative SsrA-binding protein [Sinorhizobium fredii NGR234] Length = 159 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 104/158 (65%), Positives = 130/158 (82%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +KVV++NRKAR+NY IV ++EAG+VLTGTEVKSLR K NIS+SYAT E Sbjct: 1 MAQKGSERTIRKVVAENRKARFNYEIVDTYEAGLVLTGTEVKSLREGKANISESYATDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH RR RKLLLSKRE++RL AV R+GM+L+P+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHETRRRRKLLLSKREVNRLQGAVNREGMSLIPLKIYFNDR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LAL +GKK +DKRET K+RDW+RQK+R+L+E Sbjct: 121 GRAKLELALGKGKKLHDKRETSKERDWNRQKNRLLKER 158 >gi|222085383|ref|YP_002543913.1| ssrA-binding (tmRNA-binding) protein [Agrobacterium radiobacter K84] gi|254772989|sp|B9JC66|SSRP_AGRRK RecName: Full=SsrA-binding protein gi|221722831|gb|ACM25987.1| ssrA-binding (tmRNA-binding) protein [Agrobacterium radiobacter K84] Length = 159 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 101/158 (63%), Positives = 130/158 (82%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KK+V++NRKAR+NY I+ ++EAGIVL GTEVKSLR K NI++SYA+ E+ Sbjct: 1 MAPKGSQRVVKKIVAENRKARFNYEIIDTYEAGIVLMGTEVKSLREGKANIAESYASDED 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLLS REI RL + + R+GMTL+P+KIYFN Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIGRLRSGINREGMTLIPLKIYFNDN 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK +DKR++EK+RDW+RQK RIL+++ Sbjct: 121 GRAKLELALAKGKKLHDKRQSEKERDWNRQKGRILKDN 158 >gi|254228628|ref|ZP_04922052.1| SsrA-binding protein, putative [Vibrio sp. Ex25] gi|151938807|gb|EDN57641.1| SsrA-binding protein, putative [Vibrio sp. Ex25] Length = 330 Score = 194 bits (493), Expect = 3e-48, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY Sbjct: 170 MAKKKTKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANISESYVFMR 229 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L+ V R+GMTL + +Y++ Sbjct: 230 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRVNREGMTLTALSLYWS 289 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 290 -RSWVKLKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 326 >gi|83589144|ref|YP_429153.1| SsrA-binding protein [Moorella thermoacetica ATCC 39073] gi|123525142|sp|Q2RLS9|SSRP_MOOTA RecName: Full=SsrA-binding protein gi|83572058|gb|ABC18610.1| SsrA-binding protein [Moorella thermoacetica ATCC 39073] Length = 155 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 84/147 (57%), Positives = 107/147 (72%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+DNR+AR++Y I ++EAGI LTGTEVKSLR + NI DSYA EN E+ L + +I Sbjct: 6 KVVTDNRRARHDYFIEETYEAGIALTGTEVKSLRNGRANIKDSYARVENGELILHDMHIS 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH PRR R+LL+ + EI RLY VR G+TL+P+K+YFN +GLAK++LAL + Sbjct: 66 PYEQGNRFNHEPRRPRRLLMHRYEIQRLYGKVREKGLTLIPLKVYFNERGLAKVELALVK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK+ YDKRE RD R+ R LRE Sbjct: 126 GKRLYDKREDIAARDAQREIARALRER 152 >gi|49475296|ref|YP_033337.1| SsrA-binding protein [Bartonella henselae str. Houston-1] gi|61216509|sp|Q6G467|SSRP_BARHE RecName: Full=SsrA-binding protein gi|49238102|emb|CAF27309.1| SSRA-binding protein [Bartonella henselae str. Houston-1] Length = 158 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 97/155 (62%), Positives = 127/155 (81%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P +K+++DNRKAR+NY I+ + EAG+VL G EVKSLR + NI++SYA+FEN E+ Sbjct: 3 KKKNAPVRKIIADNRKARFNYEILDNLEAGLVLQGAEVKSLRSNHANIAESYASFENGEL 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY QANRFNH PRR RKLL+SKRE+ R + A R+GMTLVP+K+YFN +G A Sbjct: 63 WLVNSYIPEYTQANRFNHEPRRLRKLLISKREMARFFNATSREGMTLVPLKLYFNERGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRETEKKRDW R+K R+L+ + Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWGREKARLLKRY 157 >gi|297562651|ref|YP_003681625.1| SsrA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847099|gb|ADH69119.1| SsrA-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 154 Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 70/150 (46%), Positives = 100/150 (66%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K+++ NR+AR++YHI ++EAG+VLTGTEVKSLR + ++ D +A + E+WL N Sbjct: 5 TGRKLIAQNRRARHDYHIDETYEAGLVLTGTEVKSLRQGRASLVDGFAHINDGEVWLENV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY Q NH RR+RKLLL + +I RL R G TLVP+ +YF+ G AK+++A Sbjct: 65 HIPEYSQGTWTNHAARRSRKLLLHREQISRLIGKTREPGFTLVPLSLYFSD-GRAKVEIA 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK+ YDKR +R+ R R LR Sbjct: 124 LARGKREYDKRHDIAEREAKRDMERALRRR 153 >gi|254504807|ref|ZP_05116958.1| SsrA-binding protein [Labrenzia alexandrii DFL-11] gi|222440878|gb|EEE47557.1| SsrA-binding protein [Labrenzia alexandrii DFL-11] Length = 159 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 97/157 (61%), Positives = 121/157 (77%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K G+P + ++SDNRKAR+NY I + EAGI L GTEVKSLR K NI +SYA Sbjct: 1 MAPKKGGHPGRTIISDNRKARFNYEIEDTLEAGIELKGTEVKSLRTGKANIGESYAAEHK 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIW+ N YIPEYLQ NRFNH PRR RKLLL KREI +L AV++DG T+VP+K+YFN + Sbjct: 61 GEIWIYNVYIPEYLQGNRFNHEPRRPRKLLLHKREIGKLAGAVQKDGKTIVPLKLYFNEQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK++LALA+GKK +DKRETEKKRDW R+K R+++ Sbjct: 121 GRAKLELALARGKKLHDKRETEKKRDWQREKSRLMKN 157 >gi|322420490|ref|YP_004199713.1| SsrA-binding protein [Geobacter sp. M18] gi|320126877|gb|ADW14437.1| SsrA-binding protein [Geobacter sp. M18] Length = 267 Score = 193 bits (492), Expect = 6e-48, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I +EAG+VL GTEVKSLR K N++DS+A +N E +L N + Sbjct: 112 GEKLICNNKKAFHDYFIEERYEAGMVLQGTEVKSLRSGKANLNDSFAMVKNGEAFLHNFH 171 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLLL K+EI +L++ +R G TL+P+++YF G K +L L Sbjct: 172 INPYDFGNRENHDPDRMRKLLLHKKEIVKLFSKIREQGYTLIPLRVYFKE-GKVKAELGL 230 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKKNYDKRE K++D R ++E N Sbjct: 231 AKGKKNYDKREVMKQKDMQRDVVVAMKERN 260 >gi|218658904|ref|ZP_03514834.1| SsrA-binding protein [Rhizobium etli IE4771] Length = 156 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 103/155 (66%), Positives = 130/155 (83%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K KVV++NRKAR+NY I+ ++EAG+VLTGTEVKSLR K NI++SYA+ E EI Sbjct: 1 KGSQRVVNKVVAENRKARFNYEIIDTYEAGLVLTGTEVKSLREGKANIAESYASDEGGEI 60 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R+GMTL+P+KIYFN +G A Sbjct: 61 WLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNREGMTLIPLKIYFNDRGRA 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRE+EK+RDW+RQK R+L+++ Sbjct: 121 KMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 155 >gi|110678280|ref|YP_681287.1| SsrA-binding protein [Roseobacter denitrificans OCh 114] gi|109454396|gb|ABG30601.1| SsrA-binding protein, putative [Roseobacter denitrificans OCh 114] Length = 220 Score = 193 bits (491), Expect = 6e-48, Method: Composition-based stats. Identities = 80/154 (51%), Positives = 112/154 (72%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 66 SKSDPNYKVVAENRRARFDYAIESDVECGIILEGSEVKSLREGGANIAESYAAVEDGELW 125 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSYI Y QA F H RR RKLL+S++++ + A +R GMTLVP+ +YFN +G+AK Sbjct: 126 LVNSYIAPYKQAKTFQHEERRRRKLLISRKQLSDFWNATQRKGMTLVPLVLYFNHRGMAK 185 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R++++H Sbjct: 186 IKIGVAKGKKLHDKRETAAKRDWSRQKSRLMKDH 219 >gi|326387213|ref|ZP_08208823.1| SsrA-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208394|gb|EGD59201.1| SsrA-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 160 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 86/148 (58%), Positives = 115/148 (77%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+V++NR+AR++Y+I +EAGIVLTGTEVKSLR + +I++SYA +N E+WL NS + Sbjct: 12 KKIVAENRRARFDYYIEDVYEAGIVLTGTEVKSLRFGEGSIAESYAEVKNGEVWLINSNV 71 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PE+ NRFNH P+R RKLLL +REI R + AV R GMTLVP+ +YFN +G AK++LALA Sbjct: 72 PEFSHGNRFNHEPKRPRKLLLKEREIDRFHGAVERKGMTLVPLSVYFNGRGRAKVELALA 131 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK DKR + K+RDW R K RI+R+H Sbjct: 132 RGKNAADKRASIKERDWKRDKARIMRDH 159 >gi|222148073|ref|YP_002549030.1| SsrA-binding protein [Agrobacterium vitis S4] gi|254772990|sp|B9JUM9|SSRP_AGRVS RecName: Full=SsrA-binding protein gi|221735061|gb|ACM36024.1| SSRA-binding protein [Agrobacterium vitis S4] Length = 158 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 102/156 (65%), Positives = 131/156 (83%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K+V++NRKAR+NY I+ ++EAGI+LTGTEVKSLR K NI++SYA+ E Sbjct: 1 MAPRGSQRTVNKIVAENRKARFNYEIIDTYEAGIMLTGTEVKSLREGKANIAESYASDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +EIWL NS++PEYLQANRFNH PRR RKLLL+KREI+RL A+ R+GMTLVP+KIYFN K Sbjct: 61 EEIWLINSHLPEYLQANRFNHEPRRRRKLLLNKREINRLRVAINREGMTLVPLKIYFNEK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 G AK++LALA+GKK +DKRETEK+RDW+RQK R+L+ Sbjct: 121 GRAKLELALAKGKKLHDKRETEKERDWNRQKSRLLK 156 >gi|332185064|ref|ZP_08386813.1| ssrA-binding protein [Sphingomonas sp. S17] gi|332014788|gb|EGI56844.1| ssrA-binding protein [Sphingomonas sp. S17] Length = 159 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 86/158 (54%), Positives = 122/158 (77%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + KK+V++NR+AR++Y I ++EAGI LTGTEVKSLR + +I++SYA Sbjct: 1 MRPKPQTFDKKKIVAENRRARFDYAIETTYEAGIALTGTEVKSLRFGEGSIAESYAEVRG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E+WL NS +PE+ NRFNH +R RKLLL +REI++L+ AV R+GMTLVP+ IYFN++ Sbjct: 61 EEVWLVNSNVPEFSHGNRFNHEAKRPRKLLLHEREINKLHGAVAREGMTLVPLMIYFNSR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK +DKR++ K+RDW R++ RILR+ Sbjct: 121 GRAKVELALAKGKKAHDKRDSIKERDWKREQGRILRDR 158 >gi|261218983|ref|ZP_05933264.1| small protein B [Brucella ceti M13/05/1] gi|260924072|gb|EEX90640.1| small protein B [Brucella ceti M13/05/1] Length = 147 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 93/145 (64%), Positives = 125/145 (86%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKAR+N+ I+ + EAG+VLTGTEVKSLR ++ NI++SYA+FE+ E WL NSYIPEY Sbjct: 2 IAENRKARFNFEILDTLEAGLVLTGTEVKSLRANQANIAESYASFEDGEFWLINSYIPEY 61 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 Q NRFNH PRR RKLL+S+RE+ RL+ +V R+GMT+VP+K+YFN +G AK++LALA+GK Sbjct: 62 TQGNRFNHEPRRLRKLLVSRREMSRLFNSVSREGMTVVPLKLYFNDRGRAKLELALARGK 121 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 K +DKRETEKKRDW+R+K R+LR+ Sbjct: 122 KTHDKRETEKKRDWNREKARLLRDR 146 >gi|13476429|ref|NP_107999.1| SsrA-binding protein [Mesorhizobium loti MAFF303099] gi|22096172|sp|Q985B9|SSRP_RHILO RecName: Full=SsrA-binding protein gi|14027190|dbj|BAB54144.1| SSRA-binding protein [Mesorhizobium loti MAFF303099] Length = 159 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 97/158 (61%), Positives = 126/158 (79%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +P K V++NRKAR++Y ++ + EAG+VLTGTEVKSLR + NI DSYA+ E Sbjct: 1 MNQVRKADPNNKTVAENRKARFSYEVLDTIEAGLVLTGTEVKSLRQGQANIQDSYASVEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLL+KRE+ +L +V R+GMTLVP+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLNKREMAKLSQSVDREGMTLVPLKIYFNDQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ LA+ +GKK +DKRETEK+RDW R+K R+L+E Sbjct: 121 GRAKLLLAVGRGKKLHDKRETEKQRDWSREKGRLLKER 158 >gi|149912743|ref|ZP_01901277.1| SsrA-binding protein [Roseobacter sp. AzwK-3b] gi|149813149|gb|EDM72975.1| SsrA-binding protein [Roseobacter sp. AzwK-3b] Length = 158 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 84/159 (52%), Positives = 118/159 (74%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + NP KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYAT +N Sbjct: 1 MA-KPKDNPNYKVVAENRRARFDYAIEDDLECGIILEGSEVKSLRQGGANIAESYATVDN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N+Y+ Y QA F H RR RKLL+S++E+ RL+ +R GMTLVP+ +YFN + Sbjct: 60 GELWLINAYVAPYEQAKTFQHEERRRRKLLVSRKELARLWNETQRKGMTLVPLVLYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G+AK+ + +A+GKK +DKRET+ KRDW RQK R+L+E+N Sbjct: 120 GMAKLKIGIAKGKKTHDKRETQAKRDWQRQKQRLLKENN 158 >gi|72162875|ref|YP_290532.1| SsrA-binding protein [Thermobifida fusca YX] gi|123628874|sp|Q47M13|SSRP_THEFY RecName: Full=SsrA-binding protein gi|71916607|gb|AAZ56509.1| SsrA-binding protein [Thermobifida fusca YX] Length = 160 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPK--KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + + + K ++ NR+AR++YHI ++EAG+VLTGTEVKSLR + ++ D +A Sbjct: 1 MARKKKQDKGQGPKTIAQNRRARHDYHIEDTYEAGLVLTGTEVKSLRAGRASLVDGFAQI 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 +N E+WL N +IPEY NH PRR RKLLL + EI +L A R G TLVP+ +YF Sbjct: 61 KNGEVWLHNVHIPEYTMGTWTNHAPRRPRKLLLHREEIAKLDAKTREAGRTLVPLSLYFR 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+GK+ YDKR +R+ R+ R LR Sbjct: 121 -NGRAKVEIALARGKREYDKRHDIAEREAKREMERALRRR 159 >gi|163760603|ref|ZP_02167684.1| SsrA-binding protein [Hoeflea phototrophica DFL-43] gi|162282218|gb|EDQ32508.1| SsrA-binding protein [Hoeflea phototrophica DFL-43] Length = 160 Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats. Identities = 104/159 (65%), Positives = 127/159 (79%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPK-KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K++ KVV++NRKAR+NY IV +FE G+VLTGTEVKSLR K NI++SYA E Sbjct: 1 MAPKNQDKSQHGKVVAENRKARFNYEIVDTFETGLVLTGTEVKSLREGKANIAESYANEE 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL NSY+PEYLQANRFNH RR RK+LL REI RL AV+RDGMTLVP+KIYFN Sbjct: 61 GGEMWLINSYVPEYLQANRFNHETRRRRKILLKAREIARLGQAVQRDGMTLVPLKIYFND 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG AK+ LALA+GKK +DKRET+K+RDW+RQK R+LR+ Sbjct: 121 KGRAKLQLALAKGKKLHDKRETQKERDWNRQKSRLLRDR 159 >gi|149184394|ref|ZP_01862712.1| SsrA-binding protein [Erythrobacter sp. SD-21] gi|148831714|gb|EDL50147.1| SsrA-binding protein [Erythrobacter sp. SD-21] Length = 160 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 84/159 (52%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K +K V+DNR+ R++YH+ +FEAG+ L GTEVK+LR + +I +SYA Sbjct: 1 MARPKPATFDKQKTVADNRRVRFDYHVEETFEAGLALQGTEVKALRAGEASIKESYAEVR 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + ++WL N+ IPEY NR NH PRR RKLLL REI +L+ AV R GMTLVP+ IYFN+ Sbjct: 61 DGQVWLINANIPEYSHGNRLNHEPRRPRKLLLHSREIEKLFGAVERKGMTLVPLSIYFNS 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GK+ +DKR+T K RDW R K R++RE Sbjct: 121 TGRAKVELALAKGKQAHDKRQTIKDRDWKRDKARLMREK 159 >gi|319404009|emb|CBI77597.1| SsrA-binding protein [Bartonella rochalimae ATCC BAA-1498] gi|319407021|emb|CBI80658.1| SsrA-binding protein [Bartonella sp. 1-1C] Length = 159 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 94/158 (59%), Positives = 126/158 (79%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +KV++DNRKAR+N+ I+ + E GIVL GTEVKSLR + NIS+SYA+FE Sbjct: 1 MNNKKKTASIRKVIADNRKARFNFEILDTLEVGIVLQGTEVKSLRSNHANISESYASFEK 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NS+IPEY QANRFNH RR RKLLLSKRE+ R + A+ R+GMT+ P+K+YFN + Sbjct: 61 GELWLINSHIPEYTQANRFNHDARRLRKLLLSKREMARFFNAISREGMTITPLKLYFNER 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++ALA+GKK +DKRETEKKRDW+R+K R+ R++ Sbjct: 121 GRVKLEIALARGKKLHDKRETEKKRDWEREKARLFRKY 158 >gi|16125447|ref|NP_420011.1| SsrA-binding protein [Caulobacter crescentus CB15] gi|221234191|ref|YP_002516627.1| SsrA-binding protein [Caulobacter crescentus NA1000] gi|22096176|sp|Q9A8Z9|SSRP_CAUCR RecName: Full=SsrA-binding protein gi|254778350|sp|B8H482|SSRP_CAUCN RecName: Full=SsrA-binding protein gi|13422521|gb|AAK23179.1| small protein B [Caulobacter crescentus CB15] gi|220963363|gb|ACL94719.1| SsrA-binding protein [Caulobacter crescentus NA1000] Length = 152 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 83/146 (56%), Positives = 115/146 (78%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K +++NR+AR++Y I +FEAGI+LTGTEVKSLR + NI++SYA+ E EI L N+ I Sbjct: 2 SKPIAENRRARFDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADI 61 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 P Y ANRFNH PRR+RKLLL +R+I +L AV+R+G TLVP+K+Y+N KGLAK+++ LA Sbjct: 62 PPYGHANRFNHEPRRHRKLLLHRRQIDKLIGAVQREGRTLVPIKLYWNDKGLAKLEVGLA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156 +GKK +DKR+T +RDW R K R+++ Sbjct: 122 KGKKLHDKRDTAAERDWQRDKARLMK 147 >gi|53803227|ref|YP_115024.1| SsrA-binding protein [Methylococcus capsulatus str. Bath] gi|61216454|sp|Q604C6|SSRP_METCA RecName: Full=SsrA-binding protein gi|53756988|gb|AAU91279.1| SsrA-binding protein [Methylococcus capsulatus str. Bath] Length = 157 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + P ++ NR+A + Y I EAG+VL G EVKSLR K + +S+ +N Sbjct: 1 MSSK-KSAPGSANIAQNRQATHEYFIEERLEAGLVLEGWEVKSLRAGKAQLKESFVMLKN 59 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++ + P R+RKLLL E+ RL V R G TLVP+ +Y+ Sbjct: 60 GEAWLFGAHFSPLPSASTHVQPDPTRSRKLLLHAEELSRLIGQVERKGYTLVPLSLYWKQ 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+++ LA+GKK +DKR EK+RDW+R+K R++R Sbjct: 120 -GRAKLEIGLARGKKQHDKRAAEKERDWEREKQRVMRR 156 >gi|294013271|ref|YP_003546731.1| SsrA-binding protein [Sphingobium japonicum UT26S] gi|307295014|ref|ZP_07574856.1| SsrA-binding protein [Sphingobium chlorophenolicum L-1] gi|292676601|dbj|BAI98119.1| SsrA-binding protein [Sphingobium japonicum UT26S] gi|306879488|gb|EFN10706.1| SsrA-binding protein [Sphingobium chlorophenolicum L-1] Length = 160 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 85/148 (57%), Positives = 115/148 (77%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+V++NR+AR+ Y + FEAGI L GTEVKSLR + NI++SYA + +++WL NS I Sbjct: 12 KKIVAENRRARFEYFLEDVFEAGIALQGTEVKSLRFGEGNIAESYAEVKGEQVWLVNSNI 71 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PE+ NRFNH P+R RKLLL +REI R++ AV R GMTLVP+ IYFN++G AK++LALA Sbjct: 72 PEFSHGNRFNHEPKRPRKLLLHQREIARMHGAVERKGMTLVPLSIYFNSRGKAKVELALA 131 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR+T K+RDW R + RI++ H Sbjct: 132 KGKKTHDKRDTIKERDWKRDQQRIMKAH 159 >gi|312115359|ref|YP_004012955.1| SsrA-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311220488|gb|ADP71856.1| SsrA-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 158 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 93/148 (62%), Positives = 121/148 (81%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +KVV++NRKAR++Y I +FE GI L G+EVKSLR K NI++SYAT + EI+L N+YI Sbjct: 10 RKVVAENRKARFSYFIDDTFEVGIALGGSEVKSLRQGKANIAESYATAQGSEIFLINAYI 69 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PEYLQANR NH RR RKLLL KRE+++L A+ R+GMTLVP++IYFN +G AK++LALA Sbjct: 70 PEYLQANRLNHETRRPRKLLLHKREVNKLMGAIHREGMTLVPLRIYFNDRGRAKLELALA 129 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRETEK RDW+RQK R++R+ Sbjct: 130 RGKKLHDKRETEKNRDWERQKGRLMRDR 157 >gi|163867984|ref|YP_001609188.1| SsrA-binding protein [Bartonella tribocorum CIP 105476] gi|240850189|ref|YP_002971582.1| SsrA-binding protein [Bartonella grahamii as4aup] gi|189046818|sp|A9IRK6|SSRP_BART1 RecName: Full=SsrA-binding protein gi|161017635|emb|CAK01193.1| SsrA-binding protein [Bartonella tribocorum CIP 105476] gi|240267312|gb|ACS50900.1| SsrA-binding protein [Bartonella grahamii as4aup] Length = 158 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 96/155 (61%), Positives = 126/155 (81%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P +K+++DNRKAR+N+ I+ + EAG+VL G EVKSLR + NI++SYA+FEN E+ Sbjct: 3 KKKNAPVRKIIADNRKARFNFEILNNLEAGLVLQGAEVKSLRSNHANIAESYASFENGEL 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY QANRFNH PRR RKLLLSKRE+ R + A R+GMTLVP+K+YFN +G Sbjct: 63 WLVNSYIPEYTQANRFNHEPRRLRKLLLSKREMARFFNATSREGMTLVPLKLYFNERGRV 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRETEKKRDW R+K R+L+ + Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWGREKARLLKRY 157 >gi|260462336|ref|ZP_05810544.1| SsrA-binding protein [Mesorhizobium opportunistum WSM2075] gi|259031830|gb|EEW33098.1| SsrA-binding protein [Mesorhizobium opportunistum WSM2075] Length = 159 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 96/158 (60%), Positives = 125/158 (79%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +P K V++NRKAR++Y ++ + E G+VLTGTEVKSLR + NI DSYA+ E Sbjct: 1 MNQVRKADPNNKTVAENRKARFSYEVLDTIETGLVLTGTEVKSLRQGQANIQDSYASVEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLL+KRE+ +L +V R+GMTLVP+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLNKREMAKLAQSVDREGMTLVPLKIYFNDQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ LA+ +GKK +DKRETEK+RDW R+K R+L+E Sbjct: 121 GRAKLLLAVGRGKKLHDKRETEKQRDWSREKGRLLKER 158 >gi|148553440|ref|YP_001261022.1| SsrA-binding protein [Sphingomonas wittichii RW1] gi|166223458|sp|A5V3L8|SSRP_SPHWW RecName: Full=SsrA-binding protein gi|148498630|gb|ABQ66884.1| SsrA-binding protein [Sphingomonas wittichii RW1] Length = 160 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 84/148 (56%), Positives = 118/148 (79%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKVV++NR+AR++Y + + FEAGI LTGTEVKSLR + +I++SYA ++D++WL NS + Sbjct: 12 KKVVAENRRARFDYFLEQFFEAGIALTGTEVKSLRFGEGSIAESYAEVKDDQVWLVNSNV 71 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PE+ NRFNH P+R RKLLL REI ++ V R+GMTL+P+ IYFN +G AK++LALA Sbjct: 72 PEFSHGNRFNHEPKRPRKLLLHAREIDKMRNGVSREGMTLIPLSIYFNGRGRAKVELALA 131 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR+TEK+RDW R++ R+LR+ Sbjct: 132 KGKKLHDKRDTEKERDWKREQQRLLRDR 159 >gi|323701506|ref|ZP_08113179.1| SsrA-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533515|gb|EGB23381.1| SsrA-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 162 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 83/159 (52%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPP-KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS K + K +++NR+AR+ YHI+ ++EAGI LTGTEVKSLR K N+ DSYA + Sbjct: 1 MSAKPAASTKVLKTITENRRARHEYHILETYEAGIALTGTEVKSLRAGKANLQDSYARVD 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E+ L N +I Y Q NRFNH P+R R+LL+ K+EI RL+ VR G+ LVP+K+YFN Sbjct: 61 NGEMMLYNMHISPYEQGNRFNHDPKRTRRLLMHKQEIMRLFGKVREKGLALVPLKVYFNP 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G K++LALAQGKK+YDKR+ RD R+ R +RE Sbjct: 121 RGRVKVELALAQGKKSYDKRQDIAARDAKREMDRAIRER 159 >gi|116251269|ref|YP_767107.1| SsrA-binding protein [Rhizobium leguminosarum bv. viciae 3841] gi|187629779|sp|Q1MJ62|SSRP_RHIL3 RecName: Full=SsrA-binding protein gi|115255917|emb|CAK06998.1| putative RNA binding protein [Rhizobium leguminosarum bv. viciae 3841] Length = 151 Score = 190 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 102/147 (69%), Positives = 127/147 (86%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV++NRKAR+NY I+ ++EAGIVL GTEVKSLR K NI++SYA+ E EIWL NSY+P Sbjct: 4 KVVAENRKARFNYEIIDTYEAGIVLMGTEVKSLREGKANIAESYASDEGGEIWLINSYLP 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EYLQANRFNH PRR RKLLLS REIHRL +A+ R+GMTL+P+KIYFN +G AK++LALA+ Sbjct: 64 EYLQANRFNHEPRRRRKLLLSGREIHRLRSAINREGMTLIPLKIYFNDRGRAKMELALAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRE+EK+RDW+RQK R+L+ H Sbjct: 124 GKKLHDKRESEKERDWNRQKSRLLKAH 150 >gi|150395898|ref|YP_001326365.1| SsrA-binding protein [Sinorhizobium medicae WSM419] gi|166223457|sp|A6U7A0|SSRP_SINMW RecName: Full=SsrA-binding protein gi|150027413|gb|ABR59530.1| SsrA-binding protein [Sinorhizobium medicae WSM419] Length = 159 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 102/158 (64%), Positives = 130/158 (82%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KKVV++NRKAR+NY IV ++EAG+VLTGTEVKSLR K NI++SYAT E Sbjct: 1 MAPKGSERTVKKVVAENRKARFNYEIVDTYEAGLVLTGTEVKSLREGKANIAESYATDEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH RR RKLLLS+RE++RL AV R+GM+L+P++IYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHETRRRRKLLLSRREVNRLQGAVNREGMSLIPLRIYFNER 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LAL +GKK +DKRET K+RDW+RQK+R+L+E Sbjct: 121 GRAKLELALGKGKKLHDKRETSKERDWNRQKNRLLKER 158 >gi|254511379|ref|ZP_05123446.1| SsrA-binding protein [Rhodobacteraceae bacterium KLH11] gi|221535090|gb|EEE38078.1| SsrA-binding protein [Rhodobacteraceae bacterium KLH11] Length = 160 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 83/160 (51%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + +P KV+++NR+AR++Y I E GIVL G+EVKSLRV NI++SYA+ + Sbjct: 1 MAKQKQKTDPNYKVIAENRRARFDYAIEEDIECGIVLEGSEVKSLRVGGSNIAESYASVD 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN Sbjct: 61 DGELWLVNSYIAPYEQAKVFKHEERRRRKLLVSRKELSNLWNATQRKGMTLVPLVLYFNH 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KG AK+ + +A+GKK +DKRET+ KRDW RQK R++++H+ Sbjct: 121 KGRAKLKIGIAKGKKLHDKRETQAKRDWSRQKQRLMKDHS 160 >gi|319784515|ref|YP_004143991.1| SsrA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170403|gb|ADV13941.1| SsrA-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 159 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 97/158 (61%), Positives = 126/158 (79%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +P K VS+NRKAR++Y ++ + EAG+VLTGTEVKSLR + NI DSYA+ E Sbjct: 1 MNQVRKADPNNKTVSENRKARFSYEVLDTVEAGLVLTGTEVKSLRQGQANIQDSYASVEG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NSY+PEYLQANRFNH PRR RKLLL+KRE+ +L +V R+GMTLVP+KIYFN + Sbjct: 61 GEIWLINSYLPEYLQANRFNHEPRRRRKLLLNKREMAKLSQSVDREGMTLVPLKIYFNDQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ LA+ +GKK +DKRE+EK+RDW R+K R+L+E Sbjct: 121 GRAKLLLAVGRGKKLHDKRESEKQRDWSREKGRLLKER 158 >gi|87199465|ref|YP_496722.1| SsrA-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|123489750|sp|Q2G8D5|SSRP_NOVAD RecName: Full=SsrA-binding protein gi|87135146|gb|ABD25888.1| SsrA-binding protein [Novosphingobium aromaticivorans DSM 12444] Length = 160 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 85/148 (57%), Positives = 114/148 (77%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKVV++NR+AR+ Y I ++EAGI LTGTEVKSLR + +I++SYA +N E+WL NS + Sbjct: 12 KKVVAENRRARFEYFIEETYEAGICLTGTEVKSLRFGEGSIAESYAEVKNGEVWLVNSNV 71 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PE+ NRFNH P+R RKLLL +R+I + AV R GMTLVP+ IYFN++G AK++LALA Sbjct: 72 PEFSHGNRFNHVPKRPRKLLLKERQIAKFTGAVERKGMTLVPLSIYFNSRGRAKVELALA 131 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK DKR T K+RDW R+K RI+++H Sbjct: 132 KGKNAADKRTTIKERDWKREKARIMKDH 159 >gi|163737157|ref|ZP_02144575.1| SsrA-binding protein [Phaeobacter gallaeciensis BS107] gi|163740430|ref|ZP_02147824.1| SsrA-binding protein [Phaeobacter gallaeciensis 2.10] gi|161386288|gb|EDQ10663.1| SsrA-binding protein [Phaeobacter gallaeciensis 2.10] gi|161389761|gb|EDQ14112.1| SsrA-binding protein [Phaeobacter gallaeciensis BS107] Length = 158 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 87/159 (54%), Positives = 120/159 (75%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P KV+++NR+AR++Y I E GI+L G+EVKSLRV NI++SYAT ++ Sbjct: 1 MA-KQKSDPNYKVIAENRRARFDYAIEDDLECGILLEGSEVKSLRVGGTNIAESYATVDD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN + Sbjct: 60 GELWLVNSYIAPYEQAKMFRHEERRRRKLLVSRKELSNLWNATQRKGMTLVPLVMYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 GLAKI + +A+GKKN+DKRETE KRDW RQK R+L++H+ Sbjct: 120 GLAKIKIGIAKGKKNHDKRETEAKRDWSRQKQRLLKDHS 158 >gi|83942204|ref|ZP_00954666.1| SsrA-binding protein [Sulfitobacter sp. EE-36] gi|83848024|gb|EAP85899.1| SsrA-binding protein [Sulfitobacter sp. EE-36] Length = 182 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 82/154 (53%), Positives = 112/154 (72%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 28 SKSDPNYKVIAENRRARFDYAIDDDVECGIILEGSEVKSLRNGGANIAESYAAVEDGELW 87 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSY+ Y QA F H RR RKLL+SK+E+ L+ +R GMTLVPM +YFN +G+AK Sbjct: 88 LVNSYVAPYTQAKTFTHEERRRRKLLVSKKELSNLWNETQRKGMTLVPMVMYFNHRGMAK 147 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R+L++H Sbjct: 148 IKIGIAKGKKLHDKRETAAKRDWSRQKQRLLKDH 181 >gi|254475532|ref|ZP_05088918.1| SsrA-binding protein [Ruegeria sp. R11] gi|214029775|gb|EEB70610.1| SsrA-binding protein [Ruegeria sp. R11] Length = 158 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYAT ++ Sbjct: 1 MA-KQKTDPNYKVIAENRRARFDYAIEDDLECGILLEGSEVKSLRAGGSNIAESYATVDD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN + Sbjct: 60 GELWLVNSYIAPYEQAKMFKHEERRRRKLLVSRKELSNLWNATQRKGMTLVPLVLYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GLAK+ + +A+GKKN+DKRE+E KRDW RQK R+L++H Sbjct: 120 GLAKLKIGIAKGKKNHDKRESEAKRDWSRQKQRLLKDH 157 >gi|103487215|ref|YP_616776.1| SsrA-binding protein [Sphingopyxis alaskensis RB2256] gi|122984973|sp|Q1GSC9|SSRP_SPHAL RecName: Full=SsrA-binding protein gi|98977292|gb|ABF53443.1| SsrA-binding protein [Sphingopyxis alaskensis RB2256] Length = 161 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 85/148 (57%), Positives = 115/148 (77%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKVV++NR+AR++Y I + FEAGI L GTEVKSLR + I++SYA E+WL N+ I Sbjct: 13 KKVVAENRRARFDYAIEQVFEAGIALQGTEVKSLRFGEGTIAESYAEVNGGEVWLINANI 72 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PE+ NRFNH P+R RKLLL+ REI++L+A V R GMTLVP+ +YFN++G AK++LALA Sbjct: 73 PEFSHGNRFNHEPKRPRKLLLNWREINKLHAGVARQGMTLVPLSVYFNSRGRAKVELALA 132 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K+RDW R K R+L++ Sbjct: 133 KGKKAHDKRESIKERDWKRDKQRLLKDR 160 >gi|90424130|ref|YP_532500.1| SsrA-binding protein [Rhodopseudomonas palustris BisB18] gi|122476202|sp|Q214K5|SSRP_RHOPB RecName: Full=SsrA-binding protein gi|90106144|gb|ABD88181.1| SsrA-binding protein [Rhodopseudomonas palustris BisB18] Length = 157 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 91/156 (58%), Positives = 120/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P KV+++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA ++ E Sbjct: 1 MAEKNERPIKVIAENRKARFNYAIEDTLEAGIALTGTEVKSIRNGKSTIAESYADPKDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R GMTLVP+K+YFN +G Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLVPLKMYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ LALA+GK+ +DKR+TEKKRDW R+K RI+R Sbjct: 121 VKLQLALAKGKQLHDKRDTEKKRDWSREKGRIMRAR 156 >gi|90420853|ref|ZP_01228758.1| SmpB, ssrA-binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90334828|gb|EAS48600.1| SmpB, ssrA-binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 157 Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats. Identities = 89/157 (56%), Positives = 124/157 (78%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + V ++NRKAR+NY I+ + EAG+VLTGTEVKSLR + +I++SYA+ E Sbjct: 1 MAKKKKS-AGSNVAAENRKARFNYEILDTLEAGLVLTGTEVKSLREGRASIAESYASEEG 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NS +PEYLQANRFNH P+R RK+L+ + ++ RL +A+++DGMTLVP++IYFN + Sbjct: 60 GELWLINSNLPEYLQANRFNHVPKRRRKILVHRTQLSRLASAIQKDGMTLVPLRIYFNDR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G+AK+ LALA+GK DKR+T K+RDW+RQK RIL+E Sbjct: 120 GVAKLQLALARGKNAPDKRQTMKERDWNRQKQRILKE 156 >gi|260432112|ref|ZP_05786083.1| SsrA-binding protein [Silicibacter lacuscaerulensis ITI-1157] gi|260415940|gb|EEX09199.1| SsrA-binding protein [Silicibacter lacuscaerulensis ITI-1157] Length = 160 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 85/160 (53%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + +P KV+++NR+AR++Y I E GIVL G+EVKSLR NI++SYA E Sbjct: 1 MAKQKQKTDPNYKVIAENRRARFDYAIEEDIECGIVLEGSEVKSLRAGGANIAESYAAVE 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E+WL NSYI Y QA F H RR RKLL+S++E+ L+AA +R GMTLVP+ +YFN Sbjct: 61 DGELWLINSYIAPYEQAKAFKHEERRRRKLLVSRKELSNLWAATQRKGMTLVPLVLYFNH 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KG AK+ + +A+GKK +DKRET+ KRDW RQK R+L++H+ Sbjct: 121 KGRAKLKIGIAKGKKIHDKRETQAKRDWSRQKQRLLKDHS 160 >gi|220921479|ref|YP_002496780.1| SsrA-binding protein [Methylobacterium nodulans ORS 2060] gi|254778369|sp|B8INF1|SSRP_METNO RecName: Full=SsrA-binding protein gi|219946085|gb|ACL56477.1| SsrA-binding protein [Methylobacterium nodulans ORS 2060] Length = 157 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 117/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++V+DNRKAR+NY I + EAGI LTGTEVKSLR K I ++YA DE Sbjct: 1 MARKPDPGRRIVADNRKARFNYEITDTVEAGIALTGTEVKSLRGGKATIGEAYAGPSGDE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N+YIPEYL+ANRFNH +R R+LLL +R+I++ A +R+G T++P+KIYFN +G Sbjct: 61 FFLFNAYIPEYLEANRFNHETKRPRRLLLHRRQINKFLGATQREGYTVIPLKIYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++L L +GKK +DKRET K+RDW R + R+LR+ Sbjct: 121 AKVELGLGRGKKLHDKRETAKERDWQRDRARLLRDK 156 >gi|121601796|ref|YP_988781.1| SsrA-binding protein [Bartonella bacilliformis KC583] gi|166222361|sp|A1US28|SSRP_BARBK RecName: Full=SsrA-binding protein gi|120613973|gb|ABM44574.1| SsrA-binding protein [Bartonella bacilliformis KC583] Length = 158 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 94/155 (60%), Positives = 127/155 (81%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +K++++NRKAR+N+ ++ EAGIVL GTEVKSLR + NI++SYA+FEN+E+ Sbjct: 3 KKKNVLIRKIIAENRKARFNFELLEHLEAGIVLNGTEVKSLRSNHANIAESYASFENEEL 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL N++IPEY QANRFNH PRR RKLL+SKREI R + AV R+GMT+VP+K+YFN +G Sbjct: 63 WLVNAHIPEYTQANRFNHEPRRLRKLLVSKREIGRFFNAVSREGMTIVPLKLYFNERGCV 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRETEKKRDW R+K R+LR + Sbjct: 123 KLEIALARGKKIHDKRETEKKRDWGREKARLLRRY 157 >gi|114705493|ref|ZP_01438396.1| SsrA-binding protein [Fulvimarina pelagi HTCC2506] gi|114538339|gb|EAU41460.1| SsrA-binding protein [Fulvimarina pelagi HTCC2506] Length = 157 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 89/157 (56%), Positives = 123/157 (78%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + V ++NRKAR+NY I+ + EAG+ LTGTEVKSLR K +I+++YAT E Sbjct: 1 MAKKKKS-SGSNVAAENRKARFNYAIIDTLEAGLQLTGTEVKSLRGGKASIAEAYATEEE 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NS +PEYLQANRFNH P+R RKLL+ + +++RL AV+RDGMTLVP+KIYFN + Sbjct: 60 GELWLINSNLPEYLQANRFNHNPKRRRKLLVHRAQLNRLAGAVQRDGMTLVPLKIYFNER 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK++LALA+GK DKR+T K+R+W+RQK R++++ Sbjct: 120 GTAKLELALAKGKNAPDKRQTIKEREWNRQKQRLMKD 156 >gi|254469842|ref|ZP_05083247.1| SsrA-binding protein [Pseudovibrio sp. JE062] gi|211961677|gb|EEA96872.1| SsrA-binding protein [Pseudovibrio sp. JE062] Length = 158 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 93/157 (59%), Positives = 122/157 (77%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K G P +KVV+DNRKAR+NY I FEAGI L GTEVKSLR K NI++SYA Sbjct: 1 MAAKKGGVPGRKVVADNRKARFNYEIEDVFEAGIELKGTEVKSLRQGKSNIAESYAAEYQ 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ + N YIPEY Q NRFNH PRR RKLL+ +RE+++L+AAV+++G T+VP+KIYFN Sbjct: 61 GEMMVYNIYIPEYTQGNRFNHEPRRPRKLLMHRRELNKLFAAVQKEGKTIVPLKIYFNED 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+++ALA+GKK +DKR+TEK RDW+R+K R+L+ Sbjct: 121 GRAKMEVALARGKKAHDKRQTEKTRDWNREKQRLLKN 157 >gi|315122834|ref|YP_004063323.1| SsrA-binding protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496236|gb|ADR52835.1| SsrA-binding protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 159 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 138/158 (87%), Positives = 148/158 (93%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS KSR + KV+S+NRKARYNYHI+RS+EAGIVLTGTEVKSLRVSKVNIS+SYAT EN Sbjct: 1 MSSKSRSDLSLKVISENRKARYNYHILRSYEAGIVLTGTEVKSLRVSKVNISESYATVEN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DEIWLTN+YIPEYLQANRFNH PRRNRKLLLSK+EI RL+AAVRRDGMTLVPMKIYFNAK Sbjct: 61 DEIWLTNTYIPEYLQANRFNHSPRRNRKLLLSKKEIRRLHAAVRRDGMTLVPMKIYFNAK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GLAKIDLALAQGKKNYDKRETEKKRDWDRQK RI+RE Sbjct: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKSRIMRER 158 >gi|254418033|ref|ZP_05031757.1| SsrA-binding protein [Brevundimonas sp. BAL3] gi|196184210|gb|EDX79186.1| SsrA-binding protein [Brevundimonas sp. BAL3] Length = 157 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 79/156 (50%), Positives = 112/156 (71%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KV+++NR+AR++Y + + EAGI L GTE+K+LR + NI++SYA E E Sbjct: 1 MAPQPQSKSKVIAENRRARFDYFLEDNIEAGIQLLGTEIKALRDGRANIAESYAAVEGRE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I L N+ IP Y QANRFNH PRR RKLLL +++I RL AV+RDG T++P+K+Y N G Sbjct: 61 IVLINADIPPYKQANRFNHEPRRPRKLLLHRKQIDRLIGAVQRDGQTIIPLKLYLNDAGK 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+++ALA+GKK +DKRE +RDW R K R++R+ Sbjct: 121 AKLEIALAKGKKLHDKREASAERDWQRDKARLMRDK 156 >gi|158422868|ref|YP_001524160.1| SsrA-binding protein [Azorhizobium caulinodans ORS 571] gi|187611470|sp|A8I0D5|SSRP_AZOC5 RecName: Full=SsrA-binding protein gi|158329757|dbj|BAF87242.1| SsrA-binding protein [Azorhizobium caulinodans ORS 571] Length = 160 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 93/158 (58%), Positives = 124/158 (78%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + P+KVV+DNR+AR++Y I FEAGI L GTEVK+LR K I +SYA +N Sbjct: 2 MAEKKKKELPRKVVADNRRARFDYDIGEVFEAGIALKGTEVKALRTGKATIHESYAGGKN 61 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSY+PEYL+ANRFNH PRR RKLL+ KR+IH+L AV R+GMT+VP+KIYFN + Sbjct: 62 GELWLFNSYVPEYLEANRFNHEPRRPRKLLMHKRQIHKLTVAVEREGMTVVPLKIYFNEQ 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+G+K +DKRE K+RDW+R K R++R+ Sbjct: 122 GRAKVEVALAKGRKAHDKREAVKERDWNRDKARLMRDR 159 >gi|315499956|ref|YP_004088759.1| ssra-binding protein [Asticcacaulis excentricus CB 48] gi|315417968|gb|ADU14608.1| SsrA-binding protein [Asticcacaulis excentricus CB 48] Length = 158 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 89/157 (56%), Positives = 120/157 (76%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN-D 61 + + KV++DNR+AR++Y + + EAGIVLTGTEVKSLR + NI++SY + EN D Sbjct: 1 MAEKEQSNYKVIADNRRARFDYFLENNTEAGIVLTGTEVKSLRQGRANIAESYVSIENGD 60 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E+ L N+ IP Y ANRFNH PRR+RKLL+ +REI R AV+R+GMT+VP K+YFN KG Sbjct: 61 ELVLINADIPHYGFANRFNHEPRRHRKLLMHRREIARFMIAVQREGMTIVPTKLYFNDKG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRETE KRDW R+K R+L++H Sbjct: 121 RVKVEIALAKGKKLHDKRETEAKRDWGREKARLLKDH 157 >gi|163745363|ref|ZP_02152723.1| SsrA-binding protein [Oceanibulbus indolifex HEL-45] gi|161382181|gb|EDQ06590.1| SsrA-binding protein [Oceanibulbus indolifex HEL-45] Length = 162 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 80/154 (51%), Positives = 113/154 (73%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 8 SKSDPNYKVIAENRRARFDYAIEEDIECGIILEGSEVKSLREGGANIAESYAAVEDGELW 67 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSY+ Y QA F H RR RKLL+S++++ L+ A +R GMTLVP+ +YFN +G+AK Sbjct: 68 LVNSYVAPYRQAKTFQHEERRRRKLLISRKQLADLWNATQRKGMTLVPLVMYFNHRGMAK 127 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R+L++H Sbjct: 128 IKIGVAKGKKLHDKRETAAKRDWSRQKQRLLKDH 161 >gi|209964807|ref|YP_002297722.1| SsrA-binding protein SsrA [Rhodospirillum centenum SW] gi|209958273|gb|ACI98909.1| SsrA-binding protein SsrA [Rhodospirillum centenum SW] Length = 158 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 80/157 (50%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P ++ + NR+AR++Y I + EAGIVL GTEVKSLR + +I++SYA +N E Sbjct: 1 MARADSAPGRIAAQNRRARFDYFIEDTLEAGIVLAGTEVKSLRSGRASINESYAGEQNGE 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L N+YIPEY F H RR RKLL+ R++ RL+A+++R+GMTLVP+ IYFN +G Sbjct: 61 LFLFNAYIPEYQLAGQFFQHEVRRPRKLLVRSRQLGRLFASIQREGMTLVPLSIYFNDRG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LAK++L +A+GKK DKRETEK RDW R K R++R Sbjct: 121 LAKVELGIAKGKKKGDKRETEKARDWQRDKARLMRAK 157 >gi|319405449|emb|CBI79068.1| SsrA-binding protein [Bartonella sp. AR 15-3] Length = 159 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 95/158 (60%), Positives = 122/158 (77%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +KV++DNRKA +N+ I+ + E GIVL GTEVKSLR S NIS+SYA FE Sbjct: 1 MNNKKKTASIRKVIADNRKAHFNFEILDTLEVGIVLQGTEVKSLRSSHANISESYAGFEK 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NS+IPEY QANRFNH RR RKLLLSKRE+ R + A R+GMT++P+K+YFN + Sbjct: 61 GELWLINSHIPEYTQANRFNHEARRLRKLLLSKREMARFFNAASREGMTIIPLKLYFNEQ 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++AL +GKK +DKRETEKKRDW R+K R+LR H Sbjct: 121 GRVKLEIALTRGKKLHDKRETEKKRDWGREKARLLRRH 158 >gi|260893341|ref|YP_003239438.1| SsrA-binding protein [Ammonifex degensii KC4] gi|260865482|gb|ACX52588.1| SsrA-binding protein [Ammonifex degensii KC4] Length = 150 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 76/149 (51%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P KV+ +NR+AR+ YHI+ ++EAGIVL GTEVKSLR + ++ DS+A EN E+WL N + Sbjct: 2 PVKVICENRRARHEYHIMETYEAGIVLQGTEVKSLRAGRASLQDSFARVENGEVWLYNMH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q NR+NH P+R RKLLL KREI L+ R G+TL+P++ YF G AK++LAL Sbjct: 62 ISPYEQGNRYNHDPKRPRKLLLHKREIMYLWGRTREKGLTLIPLRCYFKD-GRAKVELAL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK YD+R +R R+ R L+ Sbjct: 121 AKGKKLYDRRADLAERAARREMERALKRR 149 >gi|94496510|ref|ZP_01303086.1| SsrA-binding protein [Sphingomonas sp. SKA58] gi|94423870|gb|EAT08895.1| SsrA-binding protein [Sphingomonas sp. SKA58] Length = 169 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 82/149 (55%), Positives = 114/149 (76%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+V++NR+A++ Y + FEAGI L GTEVKSLR + NI++SYA + +++WL NS I Sbjct: 21 KKIVAENRRAKFEYFLEDVFEAGIALQGTEVKSLRFGEGNIAESYAEVKGNQVWLVNSNI 80 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PE+ NRFNH +R RKLLL +REI R++ AV R GMTLVP+ +YFN++G K++LALA Sbjct: 81 PEFSHGNRFNHESKRPRKLLLHEREIARMHGAVERKGMTLVPLALYFNSRGKVKVELALA 140 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKRET K+RDW R + RI++ H+ Sbjct: 141 KGKKTHDKRETIKERDWKRDQQRIMKAHS 169 >gi|167647047|ref|YP_001684710.1| SsrA-binding protein [Caulobacter sp. K31] gi|189046821|sp|B0T1M3|SSRP_CAUSK RecName: Full=SsrA-binding protein gi|167349477|gb|ABZ72212.1| SsrA-binding protein [Caulobacter sp. K31] Length = 152 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 83/145 (57%), Positives = 114/145 (78%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K +++NR+ARY+Y I + EAG++LTGTEVKSLRV + NI++SYA+ E I L N+ IP Sbjct: 3 KPIAENRRARYDYFIEETMEAGLMLTGTEVKSLRVGRANIAESYASVEGRTIKLINADIP 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y ANRFNH PRR+R LLL +++I +L AV+RDG TL+P+K+Y+N KGLAK+++ LA+ Sbjct: 63 PYGHANRFNHEPRRHRTLLLHRKQIDKLIGAVQRDGRTLIPLKLYWNEKGLAKLEIGLAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKKN+DKRETE RDW R K R+++ Sbjct: 123 GKKNHDKRETEAARDWQRDKARLMK 147 >gi|295690059|ref|YP_003593752.1| SsrA-binding protein [Caulobacter segnis ATCC 21756] gi|295431962|gb|ADG11134.1| SsrA-binding protein [Caulobacter segnis ATCC 21756] Length = 152 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 84/145 (57%), Positives = 115/145 (79%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K +++NR+ARY+Y I +FEAGI+LTGTEVKSLR + NI++SYA+ E EI L N+ IP Sbjct: 3 KPIAENRRARYDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADIP 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y ANRFNH PRR+RKLLL +++I +L AV+R+G TL+P+K+Y+N KGLAK+++ LA+ Sbjct: 63 PYGHANRFNHEPRRHRKLLLHRKQIDKLIGAVQREGRTLIPIKLYWNEKGLAKLEVGLAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKRETE RDW R K R+++ Sbjct: 123 GKKLHDKRETEANRDWQRDKARLMK 147 >gi|259418084|ref|ZP_05742003.1| SsrA-binding protein [Silicibacter sp. TrichCH4B] gi|259346990|gb|EEW58804.1| SsrA-binding protein [Silicibacter sp. TrichCH4B] Length = 167 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + +P KV+++NR+AR++Y I + E GIVL G+EVKSLR NI++SYA E Sbjct: 10 MA-QQKTDPNYKVIAENRRARFDYAIEQDLECGIVLEGSEVKSLRAGGSNIAESYAAVEE 68 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN + Sbjct: 69 GELWLVNSYIAPYEQAKVFKHDERRRRKLLVSRKEMANLWNATQRKGMTLVPLVLYFNHR 128 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AKI + +A+GKKN+DKRE + KRDW RQK R+L++H Sbjct: 129 GMAKIKIGIAKGKKNHDKREAQAKRDWSRQKQRLLKDH 166 >gi|304392078|ref|ZP_07374020.1| SsrA-binding protein [Ahrensia sp. R2A130] gi|303296307|gb|EFL90665.1| SsrA-binding protein [Ahrensia sp. R2A130] Length = 158 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 101/158 (63%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K+V++NRKARYNY I +FEAG++L GTEVKSLR K NI++SYA FE+ Sbjct: 1 MAKKKAEGVG-KIVAENRKARYNYAIEDNFEAGLMLHGTEVKSLRTGKANIAESYANFED 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N YIPEYLQANRFNH PRR RKLL+SKREI RL A+ RDGMTLVP+K+YFN + Sbjct: 60 GEMWLINGYIPEYLQANRFNHEPRRRRKLLMSKREISRLSQAIARDGMTLVPLKLYFNDR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AK+++ L +GKKN+DKR+TEKKRDW+R+K R+LR+ Sbjct: 120 GMAKLEIGLGKGKKNHDKRDTEKKRDWNREKGRLLRDR 157 >gi|85374376|ref|YP_458438.1| SsrA-binding protein [Erythrobacter litoralis HTCC2594] gi|122544238|sp|Q2N9K0|SSRP_ERYLH RecName: Full=SsrA-binding protein gi|84787459|gb|ABC63641.1| small protein B [Erythrobacter litoralis HTCC2594] Length = 160 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K +K V++NR+AR++Y + FEAGI L GTEVK+LR + +I++SYA Sbjct: 1 MARPKPETFDKQKTVAENRRARFDYAVEDKFEAGIALQGTEVKALRAGEASIAESYAEVR 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E WL N+ IPEY NR NH PRR RKLLL REI RL AV R GMTLVP+ IYFN+ Sbjct: 61 DGEAWLINANIPEYSHGNRLNHQPRRPRKLLLHNREIERLLGAVERKGMTLVPLSIYFNS 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AK++LALA+G++ DKRE K RDW R K RI+R+ Sbjct: 121 RGRAKVELALAKGRQAQDKREYIKDRDWKRDKARIMRDK 159 >gi|159036575|ref|YP_001535828.1| SsrA-binding protein [Salinispora arenicola CNS-205] gi|189046842|sp|A8M3R4|SSRP_SALAI RecName: Full=SsrA-binding protein gi|157915410|gb|ABV96837.1| SsrA-binding protein [Salinispora arenicola CNS-205] Length = 159 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KVV+ NRKAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A N E++L Sbjct: 5 KGRKVVASNRKARHDYSILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERNGELYLHGM 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY+Q NH PRR RKLLL++ EI RL R G+TLVP+++YF+ G AK+++ Sbjct: 65 HIPEYVQGTWTNHEPRRTRKLLLNRTEIDRLIGKTRESGLTLVPLQVYFSD-GWAKVEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +A+GKK YDKR+ KRD R+ R + Sbjct: 124 VAKGKKAYDKRQDLAKRDAQREMARAAGRRS 154 >gi|254487765|ref|ZP_05100970.1| SsrA-binding protein [Roseobacter sp. GAI101] gi|214044634|gb|EEB85272.1| SsrA-binding protein [Roseobacter sp. GAI101] Length = 184 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 80/154 (51%), Positives = 112/154 (72%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 30 SKSDPNYKVIAENRRARFDYAIDDDVECGIILEGSEVKSLRNGGANIAESYAAVEDGELW 89 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSY+ Y QA F H RR RKLL+SK+++ L+ +R GMTLVP+ +YFN +G+AK Sbjct: 90 LVNSYVAPYSQAKTFTHEERRRRKLLVSKKQLSNLWNETQRKGMTLVPLVMYFNHRGMAK 149 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R+L++H Sbjct: 150 IKIGIAKGKKLHDKRETAAKRDWSRQKQRLLKDH 183 >gi|209884965|ref|YP_002288822.1| SsrA-binding protein [Oligotropha carboxidovorans OM5] gi|226706528|sp|B6JGA6|SSRP_OLICO RecName: Full=SsrA-binding protein gi|209873161|gb|ACI92957.1| SsrA-binding protein [Oligotropha carboxidovorans OM5] Length = 157 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 97/156 (62%), Positives = 123/156 (78%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P KVV++NRKAR+NY I +FEAG++LTGTEVKS R K IS+SYA +N E Sbjct: 1 MTEKKARPIKVVAENRKARFNYSIEDTFEAGVMLTGTEVKSARNGKSTISESYADSKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH PRR RKLLL KR+I++L A+ R+GMTL+P+K+YFN +G Sbjct: 61 IWLVNANIPEYLQANRFNHEPRRPRKLLLHKRQINKLIGAIEREGMTLIPLKMYFNEQGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW R+K R+LR Sbjct: 121 LKLELALAKGKKLHDKRETEKKRDWSREKSRLLRAR 156 >gi|134300816|ref|YP_001114312.1| SsrA-binding protein [Desulfotomaculum reducens MI-1] gi|187611495|sp|A4J8T4|SSRP_DESRM RecName: Full=SsrA-binding protein gi|134053516|gb|ABO51487.1| SsrA-binding protein [Desulfotomaculum reducens MI-1] Length = 161 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 108/158 (68%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ K ++DNR+AR+ YH++ ++EAGI L+GTEVKSLR K N+ D++A EN Sbjct: 1 MAAKATSEKGFKTITDNRRARHEYHVIETYEAGIALSGTEVKSLRAGKANLQDAFARVEN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ L N +I Y Q NRFNH P+R R+LL+ K+EI RLY VR G+ L+P+K+YFN + Sbjct: 61 GEMMLYNLHISPYEQGNRFNHEPKRTRRLLMHKQEILRLYGKVREKGLALIPLKVYFNPR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ LALAQGKK+YDKR RD R R +RE Sbjct: 121 GKVKVQLALAQGKKSYDKRHDIAARDAKRDMDRAMRER 158 >gi|170739035|ref|YP_001767690.1| SsrA-binding protein [Methylobacterium sp. 4-46] gi|238688048|sp|B0U7H1|SSRP_METS4 RecName: Full=SsrA-binding protein gi|168193309|gb|ACA15256.1| SsrA-binding protein [Methylobacterium sp. 4-46] Length = 157 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 117/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P ++VV+DNRKAR++Y I + EAGI LTGTEVKSLR K I ++YA DE Sbjct: 1 MAPKADPARRVVADNRKARFHYEITDTVEAGIALTGTEVKSLRGGKATIGEAYAGPSGDE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N+YIPEYL+ANRFNH +R R+LLL +R+I++ A +R+G T++P+KIYFN +G Sbjct: 61 FFLFNAYIPEYLEANRFNHETKRPRRLLLHRRQINKFLGATQREGYTVIPLKIYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++L L +GKK +DKRET K+RDW R K R++R+ Sbjct: 121 AKVELGLGRGKKLHDKRETAKERDWQRDKARLMRDK 156 >gi|307946578|ref|ZP_07661913.1| SsrA-binding protein [Roseibium sp. TrichSKD4] gi|307770242|gb|EFO29468.1| SsrA-binding protein [Roseibium sp. TrichSKD4] Length = 160 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 98/158 (62%), Positives = 118/158 (74%), Gaps = 1/158 (0%) Query: 1 MS-LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K++ P VVSDNRKAR+N+ I EAGI L GTEVKSLR K NI +SYA Sbjct: 1 MAPKKNKNAPNISVVSDNRKARFNFEIEDVLEAGIELKGTEVKSLRTGKANIGESYAAEY 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EIW+ N YIPEY Q NRFNH PRR RKLLL KREI +L AV++DG T+VP+KIYFN Sbjct: 61 QGEIWIYNVYIPEYTQGNRFNHEPRRPRKLLLHKREIGKLAGAVQKDGKTIVPLKIYFND 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KG AK++LALA+GKK +DKRETEKKRDW R+K R+++ Sbjct: 121 KGRAKLELALARGKKLHDKRETEKKRDWQREKSRLMKN 158 >gi|49474058|ref|YP_032100.1| SsrA-binding protein [Bartonella quintana str. Toulouse] gi|61216508|sp|Q6G090|SSRP_BARQU RecName: Full=SsrA-binding protein gi|49239562|emb|CAF25919.1| SSRA-binding protein [Bartonella quintana str. Toulouse] Length = 158 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 95/155 (61%), Positives = 125/155 (80%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K R P +K+++DNRKAR+N+ I+ + E G+VL G EVKSLR + NI++SYA+FEN E+ Sbjct: 3 KKRNAPVRKIIADNRKARFNFEILDNLEVGLVLQGAEVKSLRSNHANIAESYASFENGEL 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL NSYIPEY QANRFNH PRR RKLL+SKRE+ R + A R+GMTLVP+K+YFN +G A Sbjct: 63 WLVNSYIPEYTQANRFNHEPRRLRKLLISKREMARFFNATSREGMTLVPLKLYFNERGRA 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRETEKKRDW +K R+L+ + Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWRCEKARLLKRY 157 >gi|145593540|ref|YP_001157837.1| SsrA-binding protein [Salinispora tropica CNB-440] gi|189046843|sp|A4X3K9|SSRP_SALTO RecName: Full=SsrA-binding protein gi|145302877|gb|ABP53459.1| SsrA-binding protein [Salinispora tropica CNB-440] Length = 159 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 103/146 (70%), Gaps = 1/146 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KVV+ NRKAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A N E++L Sbjct: 5 KGRKVVASNRKARHDYSILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERNGELYLHGM 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY+Q NH PRR RKLLL++ EI RL R G+T+VP+++YF+ G AK+++ Sbjct: 65 HIPEYVQGTWTNHEPRRTRKLLLNRIEIDRLIGKTRESGLTIVPLQVYFSD-GWAKVEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRI 154 +A+GKK+YDKR+ KRD R+ R Sbjct: 124 VAKGKKSYDKRQDLAKRDAQREIARA 149 >gi|218290977|ref|ZP_03495025.1| SsrA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|258510747|ref|YP_003184181.1| SsrA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218239059|gb|EED06263.1| SsrA-binding protein [Alicyclobacillus acidocaldarius LAA1] gi|257477473|gb|ACV57792.1| SsrA-binding protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 157 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 107/152 (70%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + ++++ NRKA ++Y I ++EAG+VLTGTE+KS+R V++ D+YA ++ E+++ Sbjct: 3 RSQGIRLIAQNRKAYHDYFIEETYEAGLVLTGTEIKSIRKGSVSLRDAYARVDDGEVYIY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y Q NRFNH P R RK LL K+EI+ LY AVR+ G+TLVP KIY G AK++ Sbjct: 63 NMHIAPYEQGNRFNHDPLRPRKCLLHKKEINHLYGAVRQRGVTLVPTKIYIKD-GWAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA+GKK YDKRE K+RD +R+ R LR Sbjct: 122 LALAKGKKLYDKREAAKERDANREIQRALRAR 153 >gi|120402913|ref|YP_952742.1| SsrA-binding protein [Mycobacterium vanbaalenii PYR-1] gi|189046834|sp|A1T6D6|SSRP_MYCVP RecName: Full=SsrA-binding protein gi|119955731|gb|ABM12736.1| SsrA-binding protein [Mycobacterium vanbaalenii PYR-1] Length = 165 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 106/160 (66%), Gaps = 3/160 (1%) Query: 1 MSLKSR--GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + + +VV+ NRKAR+NY I+ ++EAGI L GTEVKSLR + +++D++AT Sbjct: 1 MAKKPKAVKDSNNQVVATNRKARHNYSILDTYEAGIALMGTEVKSLREGQASLADAFATV 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 ++ EIWL N +IPEY NH PRRNRKLL+ +REI L +R +TLVP+ +YF Sbjct: 61 DDGEIWLRNLHIPEYHHGTWTNHAPRRNRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFT 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GK+ +DKR+ +RD R+ R L Sbjct: 121 G-GKVKVELALARGKQAHDKRQDMARRDAQREVTRELGRR 159 >gi|255264131|ref|ZP_05343473.1| SsrA-binding protein [Thalassiobium sp. R2A62] gi|255106466|gb|EET49140.1| SsrA-binding protein [Thalassiobium sp. R2A62] Length = 158 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P KV+++NR+AR++Y I E GIVL G+EVKSLR + NI+DSYA E+ Sbjct: 1 MAKKPNTDPNYKVIAENRRARFDYAIEDDIECGIVLMGSEVKSLRTGQSNIADSYAAVED 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++LTN+YI Y F H RR RKLL+SKRE+ RL+ A +R+GMTLVP+ +YFN K Sbjct: 61 GELFLTNAYIAPYT-RAMFGHEERRKRKLLVSKREVARLWNATQREGMTLVPLVMYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 GL K+ + A+GKKN+DKRET KRDW RQK R+L+ Sbjct: 120 GLVKVKIGTAKGKKNHDKRETSAKRDWGRQKQRLLKH 156 >gi|126740824|ref|ZP_01756509.1| SsrA-binding protein [Roseobacter sp. SK209-2-6] gi|126718120|gb|EBA14837.1| SsrA-binding protein [Roseobacter sp. SK209-2-6] Length = 158 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 83/159 (52%), Positives = 115/159 (72%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P KV+++NR+AR++Y I E G+VL G+EVK+LR NI++SYA E+ Sbjct: 1 MA-KQKSDPNYKVIAENRRARFDYAIEDDVECGVVLEGSEVKALRNGGGNIAESYAAVED 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSY+P Y QA F H RR RKLL S+REI ++ A +R GMTLVP+ +YFN K Sbjct: 60 GELWLVNSYVPPYEQAKMFKHIERRRRKLLASRREIANMWNATQRKGMTLVPIVMYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ + +A+GKKN+DKR TE KRDW RQK R+L++H+ Sbjct: 120 GRIKLKIGIAKGKKNHDKRATEAKRDWSRQKQRLLKDHS 158 >gi|304321936|ref|YP_003855579.1| SsrA-binding protein [Parvularcula bermudensis HTCC2503] gi|303300838|gb|ADM10437.1| SsrA-binding protein [Parvularcula bermudensis HTCC2503] Length = 163 Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 85/162 (52%), Positives = 119/162 (73%), Gaps = 4/162 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE- 59 M+ + + +P K +++NR+AR++YH+ S EAGIVLTGTEVK+LR K NI++SY + E Sbjct: 1 MAPRGKSDPHNKTIAENRRARFDYHVHESVEAGIVLTGTEVKALREGKANIAESYCSPEA 60 Query: 60 ---NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 EIWL N+ I +Y NR NH +R RKLLLS+REI L AV R G T++P+++Y Sbjct: 61 GPNGTEIWLINATILDYSAGNRENHDQKRPRKLLLSRREIGTLTGAVERKGFTIMPLRLY 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 FN +G+AK+ +ALA+GKK +DKR+T+K RDW RQK R+LRE+ Sbjct: 121 FNNRGIAKLAIALAEGKKLHDKRDTQKARDWSRQKQRLLREN 162 >gi|62181258|ref|YP_217675.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615620|ref|YP_001589585.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195873630|ref|ZP_02698054.2| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197301208|ref|ZP_02664518.2| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|198245783|ref|YP_002216696.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204929524|ref|ZP_03220598.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|62128891|gb|AAX66594.1| small protein B; putative tmRNA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364984|gb|ABX68752.1| hypothetical protein SPAB_03403 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|195633702|gb|EDX52116.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197287862|gb|EDY27250.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197940299|gb|ACH77632.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204321243|gb|EDZ06443.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|312913710|dbj|BAJ37684.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087165|emb|CBY96932.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614465|gb|EFY11396.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621470|gb|EFY18323.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624331|gb|EFY21164.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629370|gb|EFY26148.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633610|gb|EFY30352.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638347|gb|EFY35045.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639785|gb|EFY36468.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647354|gb|EFY43850.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322656030|gb|EFY52330.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661424|gb|EFY57649.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662624|gb|EFY58832.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322666997|gb|EFY63172.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671366|gb|EFY67489.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677627|gb|EFY73690.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681547|gb|EFY77577.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683947|gb|EFY79957.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715744|gb|EFZ07315.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323131031|gb|ADX18461.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323195516|gb|EFZ80694.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197889|gb|EFZ83012.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203067|gb|EFZ88099.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205308|gb|EFZ90283.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210542|gb|EFZ95426.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218177|gb|EGA02889.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223777|gb|EGA08082.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230940|gb|EGA15058.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234708|gb|EGA18794.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238747|gb|EGA22797.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241447|gb|EGA25478.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246856|gb|EGA30823.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253255|gb|EGA37085.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257051|gb|EGA40760.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260476|gb|EGA44087.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264467|gb|EGA47973.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269602|gb|EGA53055.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326628830|gb|EGE35173.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 175 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 134 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 135 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 172 >gi|51891478|ref|YP_074169.1| SsrA-binding protein [Symbiobacterium thermophilum IAM 14863] gi|61216483|sp|Q67SL8|SSRP_SYMTH RecName: Full=SsrA-binding protein gi|51855167|dbj|BAD39325.1| tmRNA-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 158 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 78/154 (50%), Positives = 107/154 (69%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 +R + V++NRKAR++Y + ++EAGIVL G+EVKS R +VN+ D+YA ++ EI+ Sbjct: 2 ARAKAEIQPVAENRKARHDYFVEETYEAGIVLVGSEVKSCRAGRVNLRDAYAQIKDGEIF 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I + QANRFNH P R RKLL+ K EIHRLY VR G TLVP+++YFN KG K Sbjct: 62 LLNCHISPFEQANRFNHEPLRPRKLLMHKSEIHRLYGKVREKGFTLVPLRLYFNQKGKVK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++LALA+GK+ YDKR+ R+ R+ R LR Sbjct: 122 VELALAKGKRAYDKRDDIAAREAKREMARALRGR 155 >gi|282897989|ref|ZP_06305984.1| SmpB protein [Raphidiopsis brookii D9] gi|282900663|ref|ZP_06308605.1| SmpB protein [Cylindrospermopsis raciborskii CS-505] gi|281194463|gb|EFA69418.1| SmpB protein [Cylindrospermopsis raciborskii CS-505] gi|281197133|gb|EFA72034.1| SmpB protein [Raphidiopsis brookii D9] Length = 155 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 98/153 (64%), Gaps = 2/153 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 N K++SDNR+ARY Y I+ ++EAGI LTGTEVKS+R KVN+ D YA + E WL Sbjct: 4 KNEGYKIISDNRQARYLYEILETYEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEAWLI 63 Query: 67 NSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N++I Y FNH PRR RKLLL EI +L V + G+TL+P+K+YF +G KI Sbjct: 64 NAHISPYTASGQYFNHEPRRTRKLLLHGLEIRKLIGKVEQQGLTLIPLKMYFK-RGWVKI 122 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +GKK +DKRE K+R R R ++ + Sbjct: 123 SIGLCRGKKVHDKREDLKRRQDQRDIQRAMKNY 155 >gi|317123037|ref|YP_004103040.1| SsrA-binding protein [Thermaerobacter marianensis DSM 12885] gi|315593017|gb|ADU52313.1| SsrA-binding protein [Thermaerobacter marianensis DSM 12885] Length = 155 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 76/149 (51%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 ++V+DNRKAR++Y + +FEAG+VLTGTE+KS+R +VN+ DS+A E E+WL + Sbjct: 7 GVRLVADNRKARHDYFVDETFEAGLVLTGTEIKSIRAGRVNLRDSHARVERGEVWLYGMH 66 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NRFNH P R RKLLL +REI L VR G TLVP+K+Y G AK++LAL Sbjct: 67 IAPYEHGNRFNHEPDRPRKLLLHRREIDYLAGRVRERGYTLVPLKLYLKG-GWAKVELAL 125 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK+YDKR T +R+ R+ + LR Sbjct: 126 ARGKKSYDKRATIAQREAQRRMAQALRAR 154 >gi|77464463|ref|YP_353967.1| SsrA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|126463303|ref|YP_001044417.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221640354|ref|YP_002526616.1| SsrA-binding protein [Rhodobacter sphaeroides KD131] gi|123591060|sp|Q3IZG8|SSRP_RHOS4 RecName: Full=SsrA-binding protein gi|187629780|sp|A3PMS9|SSRP_RHOS1 RecName: Full=SsrA-binding protein gi|254778376|sp|B9KMM4|SSRP_RHOSK RecName: Full=SsrA-binding protein gi|77388881|gb|ABA80066.1| SsrA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|126104967|gb|ABN77645.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17029] gi|221161135|gb|ACM02115.1| SsrA-binding protein [Rhodobacter sphaeroides KD131] Length = 157 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 77/157 (49%), Positives = 113/157 (71%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +P K++++NR+AR++Y I EAGI+L G+EVKSLR NI +SYA+ E E Sbjct: 1 MAKHSDPNSKLIAENRRARFDYFIEEEIEAGIMLLGSEVKSLRQGGSNIGESYASVEEGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N YI YLQA + H RR RKLL+S+RE+ RL+ A R+GMT+VP+++YFN +G+ Sbjct: 61 LWLINGYIAPYLQAKTWGHEERRKRKLLVSRRELARLWTATAREGMTIVPIRMYFNDRGI 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK DKRET KRDW R+K R+L++++ Sbjct: 121 VKLKIGIAKGKKLSDKRETSAKRDWSREKQRLLKQNS 157 >gi|283477505|emb|CAY73421.1| SsrA-binding protein (Small protein B) [Erwinia pyrifoliae DSM 12163] Length = 173 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 14 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 73 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + P + ++ P R+RKLLL +RE+ L+ RDG T+V + +Y+ Sbjct: 74 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLFGKANRDGYTIVALSMYWK- 132 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR+ K R+W K RI++ N Sbjct: 133 NAWAKLKIGVAKGKKEHDKRDDIKDREWKLDKARIMKHAN 172 >gi|161502216|ref|YP_001569328.1| SsrA-binding protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863563|gb|ABX20186.1| hypothetical protein SARI_00240 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 175 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 134 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 135 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKH 172 >gi|83953259|ref|ZP_00961981.1| SsrA-binding protein [Sulfitobacter sp. NAS-14.1] gi|83842227|gb|EAP81395.1| SsrA-binding protein [Sulfitobacter sp. NAS-14.1] Length = 162 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 82/154 (53%), Positives = 112/154 (72%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KV+++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 8 SKSDPNYKVIAENRRARFDYAIDDDVECGIILEGSEVKSLRNGGANIAESYAAVEDGELW 67 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSY+ Y QA F H RR RKLL+SK+E+ L+ +R GMTLVPM +YFN +G+AK Sbjct: 68 LVNSYVAPYTQAKTFTHEERRRRKLLVSKKELSNLWNETQRKGMTLVPMVMYFNHRGMAK 127 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R+L++H Sbjct: 128 IKIGIAKGKKLHDKRETAAKRDWSRQKQRLLKDH 161 >gi|292489114|ref|YP_003532001.1| ssrA-binding protein (small protein B) [Erwinia amylovora CFBP1430] gi|291554548|emb|CBA22142.1| SsrA-binding protein (Small protein B) [Erwinia amylovora CFBP1430] gi|312173271|emb|CBX81526.1| SsrA-binding protein (Small protein B) [Erwinia amylovora ATCC BAA-2158] Length = 173 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 14 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 73 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + P + ++ P R+RKLLL +RE+ L RDG T+V + +Y+ Sbjct: 74 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLIGKANRDGYTIVALSMYWK- 132 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + LA+GKK +DKR+ K R+W K RI++ N Sbjct: 133 NAWAKLKIGLAKGKKEHDKRDDIKDREWKLDKARIMKHAN 172 >gi|197105352|ref|YP_002130729.1| small protein B (tmRNA-binding protein) [Phenylobacterium zucineum HLK1] gi|196478772|gb|ACG78300.1| small protein B (tmRNA-binding protein) [Phenylobacterium zucineum HLK1] Length = 152 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 82/148 (55%), Positives = 114/148 (77%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K +++NR+AR++Y + ++FEAGI LTG+EVKSLR + NI++SYA E DEI L N+ IP Sbjct: 4 KTIAENRRARFDYFLEQTFEAGIALTGSEVKSLRNGRANIAESYAAVEGDEIVLINADIP 63 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y QA FNH PRR RKLLL ++EI RL AV+R+G T+VP ++Y++ KGLAK++++LA Sbjct: 64 PYAQAGPFFNHEPRRPRKLLLKRKEIDRLIGAVQREGRTIVPTRLYWSDKGLAKLEISLA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRET +RDW R K R+LR+ Sbjct: 124 KGKKTHDKRETAAERDWQRDKARLLRDK 151 >gi|330465937|ref|YP_004403680.1| ssra-binding protein [Verrucosispora maris AB-18-032] gi|328808908|gb|AEB43080.1| ssra-binding protein [Verrucosispora maris AB-18-032] Length = 159 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KVV+ N+KAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A + E++L Sbjct: 5 KGRKVVASNKKARHDYAILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERDGELYLHGM 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY Q NH PRR RKLLL + EI RL R G+TLVP+++YF+ G AK+++ Sbjct: 65 HIPEYTQGTWTNHEPRRTRKLLLKRLEIDRLIGKTRESGLTLVPLQVYFSD-GWAKVEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR+ KRD DR+ R + Sbjct: 124 LAKGKKAYDKRQDLAKRDADREIQRAVGRR 153 >gi|27380181|ref|NP_771710.1| SsrA-binding protein [Bradyrhizobium japonicum USDA 110] gi|30173390|sp|Q9RH74|SSRP_BRAJA RecName: Full=SsrA-binding protein gi|27353335|dbj|BAC50335.1| tmRNA-binding protein [Bradyrhizobium japonicum USDA 110] Length = 157 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 93/156 (59%), Positives = 121/156 (77%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P KV+++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E Sbjct: 1 MADKNERPIKVMAENRKARFNYAIEDTIEAGIALTGTEVKSIRNGKSTIAESYADSKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQ NRFNH P+R RKLLL +R+I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINATIPEYLQGNRFNHEPKRPRKLLLHRRQINKLIGAVDREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LA+A+GKK +DKRETEKKRDW R+K R+LR Sbjct: 121 AKLQLAVAKGKKLHDKRETEKKRDWSREKGRLLRAR 156 >gi|299135111|ref|ZP_07028302.1| SsrA-binding protein [Afipia sp. 1NLS2] gi|298590088|gb|EFI50292.1| SsrA-binding protein [Afipia sp. 1NLS2] Length = 157 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 94/156 (60%), Positives = 121/156 (77%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P KVV++NRKAR+NY I + EAG++LTGTEVKS R K I++SYA + E Sbjct: 1 MAEKKERPIKVVAENRKARFNYSIEDTIEAGVMLTGTEVKSARNGKSTIAESYADSKGGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH PRR RKLLL KR+I++L A+ R+GMTL+P+K+YFN +G Sbjct: 61 IWLVNANIPEYLQANRFNHEPRRPRKLLLHKRQINKLIGAIEREGMTLIPLKMYFNEQGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKRETEKKRDW R+K R+LR Sbjct: 121 LKLELALAKGKKLHDKRETEKKRDWSREKSRLLRAR 156 >gi|296444873|ref|ZP_06886835.1| SsrA-binding protein [Methylosinus trichosporium OB3b] gi|296257541|gb|EFH04606.1| SsrA-binding protein [Methylosinus trichosporium OB3b] Length = 158 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 90/157 (57%), Positives = 116/157 (73%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FEND 61 + + P KVVSDNR+AR++Y I SFEAG+ LTGTEVKSLR K I++SYA + Sbjct: 1 MAEKQTPNFKVVSDNRRARFDYEIGESFEAGLALTGTEVKSLRTGKATIAESYAHVDRHG 60 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL N+ IPEYL NRFNH P+R RKLLL +RE+ +L V R+GMT+VP+K+YFN +G Sbjct: 61 EAWLVNATIPEYLSGNRFNHEPKRLRKLLLKQRELAKLAQGVEREGMTIVPLKLYFNERG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ +AL +GKK +DKRE EKKRDW R+K R+LR+ Sbjct: 121 RAKLQIALGRGKKLHDKREVEKKRDWGREKSRLLRDR 157 >gi|310815003|ref|YP_003962967.1| SsrA-binding protein [Ketogulonicigenium vulgare Y25] gi|308753738|gb|ADO41667.1| SsrA-binding protein [Ketogulonicigenium vulgare Y25] Length = 157 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 81/156 (51%), Positives = 114/156 (73%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + N +V+++NR+AR++Y I E GIVLTG+EVKSLR K NI++SYA+ EN E Sbjct: 1 MAKDKNTNYQVLAENRRARFDYQIEEDLECGIVLTGSEVKSLRTGKANIAESYASVENGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N YI Y A + H RR+RKLL+ ++E+ RL+ A +R+GMT+VP+ +YFN G Sbjct: 61 LWLINGYIAPYEPARTWGHEERRHRKLLVKRKELARLWNATQREGMTIVPLVLYFNDVGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KI +A+A+GKK +DKRE+E KRDWDRQK R+L++H Sbjct: 121 IKIKIAIAKGKKLHDKRESEAKRDWDRQKQRLLKDH 156 >gi|110633296|ref|YP_673504.1| SsrA-binding protein [Mesorhizobium sp. BNC1] gi|122966134|sp|Q11JT6|SSRP_MESSB RecName: Full=SsrA-binding protein gi|110284280|gb|ABG62339.1| SsrA-binding protein [Chelativorans sp. BNC1] Length = 155 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 91/158 (57%), Positives = 119/158 (75%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ N V+DNRKAR++Y ++ + EAG+VL+GTEVKSLR NI +SYA E Sbjct: 1 MAK----NTNITTVADNRKARFSYEVIDTLEAGLVLSGTEVKSLREGHANIQESYAAVEG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL NS+IPEY NRFNH PRR RKLLLSK+E+ RL AV R+GMT+VP+K+YFN + Sbjct: 57 GEIWLINSHIPEYFAGNRFNHEPRRRRKLLLSKKEMARLAQAVEREGMTMVPLKLYFNER 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AK+ LA+A+GKK +DKRET K+RDW R++ R+L+E Sbjct: 117 GIAKLLLAIARGKKLHDKRETLKQRDWSREQARLLKER 154 >gi|302035401|ref|YP_003795723.1| ssrA-binding protein [Candidatus Nitrospira defluvii] gi|300603465|emb|CBK39795.1| SsrA-binding protein [Candidatus Nitrospira defluvii] Length = 159 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 107/158 (67%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KVV+ NRKA ++Y I FEAG++L GTEVKSLR +VN+ DSYA+ ++ Sbjct: 1 MTKTHDTEDQYKVVATNRKAYHDYFIEEKFEAGVILRGTEVKSLREGRVNLQDSYASVDD 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L + +I Y N NH P R RKLLL ++EI++L + G+TLVP++IYF+ + Sbjct: 61 GEVYLQHCHISPYSHGNLMNHDPLRKRKLLLHRKEINKLIGKTQLKGLTLVPLRIYFSKR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK YD+RE+ K R+ R+ R +++ Sbjct: 121 GHAKVELALAKGKKQYDRRESIKAREAGREVERAIKQR 158 >gi|296394148|ref|YP_003659032.1| SsrA-binding protein [Segniliparus rotundus DSM 44985] gi|296181295|gb|ADG98201.1| SsrA-binding protein [Segniliparus rotundus DSM 44985] Length = 162 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 1/155 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + +P + +++ NRKAR++Y I+ +EAG+VL GTEVKSLR N+SD+YAT + Sbjct: 1 MKSVKKNDPNEALIARNRKARHDYSILDVYEAGVVLQGTEVKSLREGHANLSDAYATVDG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE+WL +IPEY + NH P R RKLLL +REI L R TLVP+ +YF A Sbjct: 61 DEVWLRGVHIPEYRNGSWTNHTPTRTRKLLLHRREIENLVGKTREGNTTLVPLSMYFKA- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G K+++ALA+GK+ +DKR+ KRD DR+ R + Sbjct: 120 GKVKVEIALARGKQLHDKRQDLAKRDADREVVRAI 154 >gi|316934153|ref|YP_004109135.1| SsrA-binding protein [Rhodopseudomonas palustris DX-1] gi|315601867|gb|ADU44402.1| SsrA-binding protein [Rhodopseudomonas palustris DX-1] Length = 157 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 93/156 (59%), Positives = 120/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIDDTIEAGIALTGTEVKSIRNGKTTIAESYADARGSE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLIGAVEREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LALA+GKK +DKRETEKKRDW+R+K R+LR Sbjct: 121 AKLQLALAKGKKLHDKRETEKKRDWNREKGRLLRAR 156 >gi|188582629|ref|YP_001926074.1| SsrA-binding protein [Methylobacterium populi BJ001] gi|238692897|sp|B1ZJQ3|SSRP_METPB RecName: Full=SsrA-binding protein gi|179346127|gb|ACB81539.1| SsrA-binding protein [Methylobacterium populi BJ001] Length = 157 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 82/156 (52%), Positives = 116/156 (74%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P ++VV+DNR AR++Y I +FEAGI LTGTEVKSLR K I +SYA ++ Sbjct: 1 MAPKTEPGRRVVADNRSARFHYAIEDTFEAGIALTGTEVKSLRGGKATIGESYAGPSGND 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 + L N+YIPEYL+ANRFNH +R R+LLL +R+I++L A +R G T++P+KIYFN KG Sbjct: 61 LMLFNAYIPEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVIPLKIYFNDKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++L L +GK+ +DKRE+ K+RDW R K R++R+ Sbjct: 121 AKVELGLGKGKQLHDKRESVKQRDWQRDKARLMRDK 156 >gi|296282669|ref|ZP_06860667.1| SsrA-binding protein [Citromicrobium bathyomarinum JL354] Length = 160 Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats. Identities = 83/159 (52%), Positives = 109/159 (68%), Gaps = 1/159 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K +K V++NR+AR++Y + FEAGI L GTEVKSLR + I++SYA Sbjct: 1 MARPKPPTFDKRKTVAENRRARFDYAVEEKFEAGIALQGTEVKSLRSGEATIAESYAEVR 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E WL N+ IPEY NR NH P+R RKLLL +REI +L AV R GMTLVP+ +YFN Sbjct: 61 DGEAWLINANIPEYTHGNRLNHEPKRPRKLLLHEREIEKLLGAVERKGMTLVPLSMYFNG 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AK++LALA+G++ DKR+ K RDW R K RILR+ Sbjct: 121 QGRAKVELALAKGRQTKDKRDYIKDRDWQRDKARILRDR 159 >gi|83951182|ref|ZP_00959915.1| SsrA-binding protein [Roseovarius nubinhibens ISM] gi|83839081|gb|EAP78377.1| SsrA-binding protein [Roseovarius nubinhibens ISM] Length = 168 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 86/159 (54%), Positives = 118/159 (74%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + NP KV+++NR+ARY+Y I E GI+L G+EVKSLR + NI++SYA ++ Sbjct: 11 MA-KPKDNPNYKVIAENRRARYDYAIEEDVECGIILEGSEVKSLRENSANIAESYAAVDD 69 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H +R RKLL+SKRE+ RL+ +R GMTLVP+ +YFN + Sbjct: 70 GELWLINSYIAPYEQAKTFGHEEKRRRKLLVSKRELARLWNDTQRKGMTLVPLVLYFNHR 129 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 GLAK+ + +A+GKKN DKR TE KRDW+RQK R+L++H+ Sbjct: 130 GLAKLKIGIAKGKKNVDKRATEAKRDWNRQKQRLLKDHS 168 >gi|319898684|ref|YP_004158777.1| SsrA-binding protein [Bartonella clarridgeiae 73] gi|319402648|emb|CBI76194.1| SsrA-binding protein [Bartonella clarridgeiae 73] Length = 158 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 95/155 (61%), Positives = 123/155 (79%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + +KV++DNRKAR+N+ I+ + E GI+L GTEVKSLR + NIS+SYA FE E+ Sbjct: 3 KKKTASIRKVIADNRKARFNFEILDTLEVGIILQGTEVKSLRSNHANISESYANFEKGEL 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL N+YIPEY QANRFNH RR RKLLLSKRE+ R + AV R+GMT+ P+K+YFN +G Sbjct: 63 WLINAYIPEYTQANRFNHEARRLRKLLLSKREMARFFNAVSREGMTITPLKLYFNERGRV 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRETEKKRDW R+K R+LR+H Sbjct: 123 KLEIALARGKKLHDKRETEKKRDWGREKARLLRKH 157 >gi|254523522|ref|ZP_05135577.1| small protein B [Stenotrophomonas sp. SKA14] gi|219721113|gb|EED39638.1| small protein B [Stenotrophomonas sp. SKA14] Length = 279 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K++ K ++ N++AR+ YHI FEAG+ L G EVKS+R + NI D+Y Sbjct: 113 MSKNSGKDKAKSATANKTIALNKRARHEYHIEDRFEAGLALQGWEVKSIRAGRGNIVDAY 172 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A ++ EI+L + I +Q + RR RKLLL + EI +L V RDG T+VP Sbjct: 173 AYVKDGEIFLIGAQITPLIQASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTA 232 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y++ K K+++ALA+GK+ +DKR+ K RDW +K R++R N Sbjct: 233 MYWS-KNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVMRRGN 276 >gi|119383384|ref|YP_914440.1| SsrA-binding protein [Paracoccus denitrificans PD1222] gi|187629764|sp|A1AZQ0|SSRP_PARDP RecName: Full=SsrA-binding protein gi|119373151|gb|ABL68744.1| SsrA-binding protein [Paracoccus denitrificans PD1222] Length = 156 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 80/155 (51%), Positives = 116/155 (74%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ +P K++++NR+AR++Y I E GIVLTG+EVKSLR + NI++SYA+ EN E Sbjct: 1 MATKSDPNYKIIAENRRARFDYFIESDLEVGIVLTGSEVKSLRTGQSNIAESYASVENGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N+YI Y QA F H RR RKLL+S++E+ RL+ A+ R+GMTLVP+ +YFN +G Sbjct: 61 LWLINAYIAAYKQAGVFGHEERRRRKLLVSRKELARLWQAIGREGMTLVPLVMYFNDRGK 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK DKRET KRDW+RQK R+L++ Sbjct: 121 VKLKIGVAKGKKVADKRETAAKRDWNRQKQRLLKQ 155 >gi|294637633|ref|ZP_06715912.1| SsrA-binding protein [Edwardsiella tarda ATCC 23685] gi|291089188|gb|EFE21749.1| SsrA-binding protein [Edwardsiella tarda ATCC 23685] Length = 160 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +N Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+ Sbjct: 61 GEAFLFGATFSPLNVASSHVVCDPTRTRKLLLKERELASLFGSANRDGYTIVPLSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR+ K R+W + K RI++ N Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKDREWKQDKARIMKHAN 159 >gi|319408274|emb|CBI81927.1| SsrA-binding protein [Bartonella schoenbuchensis R1] Length = 158 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 92/154 (59%), Positives = 125/154 (81%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + + +++ NRKAR+N+ I+ + EAG+VL GTEVKSLR + NIS+SYA+FEN E+W Sbjct: 4 KKNALARTIIAHNRKARFNFEILDNLEAGLVLHGTEVKSLRSNNANISESYASFENGELW 63 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N+YIPEY QANRFNH PRR RKLLLSKRE+ R + AV R+GMT+VP+++YFN KG K Sbjct: 64 LINAYIPEYTQANRFNHEPRRLRKLLLSKREMARFFNAVSREGMTIVPLQLYFNEKGCVK 123 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++A+A+GKK +DKRETEKKRDW R+K R+L+++ Sbjct: 124 LEIAIARGKKLHDKRETEKKRDWGREKARLLKKY 157 >gi|117928935|ref|YP_873486.1| SsrA-binding protein [Acidothermus cellulolyticus 11B] gi|166222352|sp|A0LVP0|SSRP_ACIC1 RecName: Full=SsrA-binding protein gi|117649398|gb|ABK53500.1| SsrA-binding protein [Acidothermus cellulolyticus 11B] Length = 159 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 74/150 (49%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K+++ N+KAR++YHI ++EAGIVLTGTEVKSLR + ++ D +A ++ E+WL N Sbjct: 5 SGRKLIASNKKARHDYHIEDTYEAGIVLTGTEVKSLRAGRASLVDGFALIKDGEVWLQNV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY + + NH PRR RKLLL KREI RL R G+TLVP+ +YF G AK++LA Sbjct: 65 HIPEYAEGSWTNHEPRRPRKLLLHKREILRLLGKTRETGLTLVPLSLYFRD-GKAKVELA 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK+ YDKR+ +R R+ R L Sbjct: 124 LARGKRAYDKRQALAERHAQREIARALGRR 153 >gi|317507099|ref|ZP_07964860.1| SsrA-binding protein [Segniliparus rugosus ATCC BAA-974] gi|316254593|gb|EFV13902.1| SsrA-binding protein [Segniliparus rugosus ATCC BAA-974] Length = 159 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + +P + +++ NRKAR++Y I+ +EAG+VL GTEVKSLR N+ D+YAT + DE+W Sbjct: 2 KKNDPNEALIARNRKARHDYSILDVYEAGVVLQGTEVKSLREGHANLLDAYATVDGDEVW 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L +IPEY + NH P R RKLLL +REI L R TLVP+ +YF A G K Sbjct: 62 LRGVHIPEYRNGSWTNHTPTRTRKLLLHRREIEDLVGKTREGNTTLVPLSMYFKA-GRVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ALA+GK+ +DKR+ KRD DR+ R + Sbjct: 121 VEIALARGKQLHDKRQDLAKRDADREVIRAMGRR 154 >gi|163732583|ref|ZP_02140028.1| SsrA-binding protein [Roseobacter litoralis Och 149] gi|161393943|gb|EDQ18267.1| SsrA-binding protein [Roseobacter litoralis Och 149] Length = 162 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 112/154 (72%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 8 SKSDPNYKVVAENRRARFDYAIESDVECGIILEGSEVKSLREGGANIAESYAAVEDGELW 67 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSY+ Y QA F H RR RKLL+S++++ + A +R GMTLVP+ +YFN +G+AK Sbjct: 68 LVNSYVAPYKQAKTFQHEERRRRKLLISRKQMADFWNATQRKGMTLVPLVLYFNHRGMAK 127 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R++++H Sbjct: 128 IKIGVAKGKKLHDKRETAAKRDWSRQKSRLMKDH 161 >gi|302524560|ref|ZP_07276902.1| SsrA-binding protein [Streptomyces sp. AA4] gi|302433455|gb|EFL05271.1| SsrA-binding protein [Streptomyces sp. AA4] Length = 160 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KV++ NRKAR++Y I+ ++EAG+VL GTEVKSLR K ++ D++AT ++ E+WL Sbjct: 3 KERGQKVIASNRKARHDYSILDTYEAGMVLQGTEVKSLRAGKASLVDAFATVDDGEVWLR 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY Q NH PRR RKLLL +REI RL + G++LVP+ +YF G K++ Sbjct: 63 NVHIPEYTQGTWTNHMPRRTRKLLLHRREIERLIGKTKESGLSLVPLSMYFKD-GKVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +ALA+GKK YDKR+T KRD + R + Sbjct: 122 IALAKGKKAYDKRQTLAKRDAQKDISRAM 150 >gi|113475974|ref|YP_722035.1| SsrA-binding protein [Trichodesmium erythraeum IMS101] gi|123160802|sp|Q112L2|SSRP_TRIEI RecName: Full=SsrA-binding protein gi|110167022|gb|ABG51562.1| SsrA-binding protein [Trichodesmium erythraeum IMS101] Length = 156 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +K++SDNR+AR+NYHI+ ++EAG+ L GTEVKS+R KVN+ D YA N+E Sbjct: 1 MAKKSGEGQKIISDNRQARFNYHIIETYEAGVALQGTEVKSIREGKVNLRDGYALIRNNE 60 Query: 63 IWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 WL N +I Y +A FNH PRR+R+LLL K+EI +L V + G+TLVP+++YF +G Sbjct: 61 AWLLNVHISPYQKAGDFFNHEPRRSRRLLLHKQEIRKLIGKVEQQGLTLVPLRMYFK-RG 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+D+ALAQGKK YDKRET K+RD R R ++++ Sbjct: 120 WVKVDIALAQGKKLYDKRETIKRRDDKRAMQRAIKQY 156 >gi|187631667|sp|Q16BP2|SSRP_ROSDO RecName: Full=SsrA-binding protein Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 80/154 (51%), Positives = 112/154 (72%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P KVV++NR+AR++Y I E GI+L G+EVKSLR NI++SYA E+ E+W Sbjct: 8 SKSDPNYKVVAENRRARFDYAIESDVECGIILEGSEVKSLREGGANIAESYAAVEDGELW 67 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L NSYI Y QA F H RR RKLL+S++++ + A +R GMTLVP+ +YFN +G+AK Sbjct: 68 LVNSYIAPYKQAKTFQHEERRRRKLLISRKQLSDFWNATQRKGMTLVPLVLYFNHRGMAK 127 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 I + +A+GKK +DKRET KRDW RQK R++++H Sbjct: 128 IKIGVAKGKKLHDKRETAAKRDWSRQKSRLMKDH 161 >gi|254465880|ref|ZP_05079291.1| SsrA-binding protein [Rhodobacterales bacterium Y4I] gi|206686788|gb|EDZ47270.1| SsrA-binding protein [Rhodobacterales bacterium Y4I] Length = 160 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + +P KV+++NR+AR++Y I E GI+L G+EVK+LR + NI+DSYA E Sbjct: 1 MAKKKQTSDPNYKVIAENRRARFDYAIEDDIECGIMLEGSEVKALRGNGTNIADSYAAVE 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E+WL NSYIP Y QA F H RR RKLL+S++E+ L+ +R GMTLVP+ IYFN Sbjct: 61 NGELWLVNSYIPPYEQAKVFKHEERRRRKLLVSRKELADLWNLTQRKGMTLVPLVIYFNH 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KG AKI L +A+GKK +DKRET+ KRDW RQK R+L++ Sbjct: 121 KGRAKIKLGIAKGKKLHDKRETQAKRDWGRQKQRLLKD 158 >gi|110225280|dbj|BAE97631.1| SsrA binding protein [Agromyces sp. KY5R] Length = 173 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 107/153 (69%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K+++ N+KAR+ Y+I+ ++EAG+VLTG+EVKSLR+ + ++ D Y E E WL Sbjct: 18 KETGEKLIASNKKARHEYNILDTYEAGLVLTGSEVKSLRMGRASLVDGYVFIERGEAWLD 77 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +YIPEYL + NH PRR RKLLL +++I +LY R GMT+VP+++YF G AK++ Sbjct: 78 AAYIPEYLNGSWTNHAPRRKRKLLLHRQQIDKLYQKTREGGMTIVPLRLYFLD-GRAKVE 136 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +ALA+GKK YDKR+T ++R R+ R +R N Sbjct: 137 IALAKGKKEYDKRQTLRERQDKREAERAMRSKN 169 >gi|145225025|ref|YP_001135703.1| SsrA-binding protein [Mycobacterium gilvum PYR-GCK] gi|315445394|ref|YP_004078273.1| SsrA-binding protein [Mycobacterium sp. Spyr1] gi|189046833|sp|A4TDF4|SSRP_MYCGI RecName: Full=SsrA-binding protein gi|145217511|gb|ABP46915.1| SsrA-binding protein [Mycobacterium gilvum PYR-GCK] gi|315263697|gb|ADU00439.1| SsrA-binding protein [Mycobacterium sp. Spyr1] Length = 165 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 105/160 (65%), Gaps = 3/160 (1%) Query: 1 MSLKSR--GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + + VV+ NRKAR+NY I+ ++EAG+ L GTEVKSLR +++D++AT Sbjct: 1 MAKKPKSVKDTNNMVVASNRKARHNYSILETYEAGVALVGTEVKSLRDGTASLADAFATV 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 ++ EIWL N +IPEY + NH PRRNRKLL+ +REI L +R +TLVP+ +YF Sbjct: 61 DDGEIWLRNLHIPEYHHGSWTNHAPRRNRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFT 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GK+ +DKR+ +RD R+ R L Sbjct: 121 G-GKVKVELALARGKQAHDKRQDMARRDAQREVTRELGRR 159 >gi|269140086|ref|YP_003296787.1| small protein B, tmRNA-binding protein [Edwardsiella tarda EIB202] gi|267985747|gb|ACY85576.1| small protein B, tmRNA-binding protein [Edwardsiella tarda EIB202] Length = 160 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +N Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+ Sbjct: 61 GEAFLFGATFTPLSVASSHVVCDPTRTRKLLLKERELATLFGSANRDGYTIVPLSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + +A+GKK +DKR+ K R+W + K RI++ Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKAREWQQDKARIMKN 157 >gi|186680977|ref|YP_001864173.1| SsrA-binding protein [Nostoc punctiforme PCC 73102] gi|238689429|sp|B2J722|SSRP_NOSP7 RecName: Full=SsrA-binding protein gi|186463429|gb|ACC79230.1| SsrA-binding protein [Nostoc punctiforme PCC 73102] Length = 155 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 99/153 (64%), Gaps = 2/153 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 N KV++DNR+ARY Y I+ ++EAGI LTGTEVKS+R KVN+ D YA N E WL Sbjct: 4 KNEGYKVIADNRQARYLYEILETYEAGIELTGTEVKSIRAGKVNLQDGYALLRNGEAWLI 63 Query: 67 NSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y FNH PRR RKLLL ++E+ +L V + G+TL+P+K+Y +G K+ Sbjct: 64 NIHISPYNASGQYFNHEPRRTRKLLLHRQELRKLIGKVEQQGLTLIPLKMYLK-RGWVKV 122 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +AL +GKK +DKRE K+R R R ++ + Sbjct: 123 SIALGKGKKLHDKREDLKRRQDQRDIQRAMKSY 155 >gi|86749722|ref|YP_486218.1| SsrA-binding protein [Rhodopseudomonas palustris HaA2] gi|123408092|sp|Q2IWV3|SSRP_RHOP2 RecName: Full=SsrA-binding protein gi|86572750|gb|ABD07307.1| SsrA-binding protein [Rhodopseudomonas palustris HaA2] Length = 157 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 93/156 (59%), Positives = 118/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIEDTVEAGISLTGTEVKSVRGGKATIAESYADSRGGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L A+ R GMTLVP+K+YFN KG Sbjct: 61 IWLINATIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAIERQGMTLVPLKLYFNEKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LALA+GK+ +DKRETEKKRDW R+K R+LR Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRAR 156 >gi|295696719|ref|YP_003589957.1| SsrA-binding protein [Bacillus tusciae DSM 2912] gi|295412321|gb|ADG06813.1| SsrA-binding protein [Bacillus tusciae DSM 2912] Length = 152 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 77/149 (51%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +KVV+ NRKA +++ I +FEAGIVLTGTE+K++R + N+ DSYA EN EI+L N + Sbjct: 3 GEKVVAQNRKAYHDFFIEDTFEAGIVLTGTEIKAIRQGRANLKDSYARVENGEIFLHNMH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q NRFNH PRR RKLLL K EI RL+ R G L+P+++Y GL K+++ L Sbjct: 63 ISPYEQGNRFNHDPRRTRKLLLHKSEILRLHGQSRERGYALIPLRLYLR-HGLCKVEIGL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK YDKR+ KRD R+ R RE Sbjct: 122 AKGKKLYDKRQDMAKRDAAREIERAFRER 150 >gi|302865527|ref|YP_003834164.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315502075|ref|YP_004080962.1| ssra-binding protein [Micromonospora sp. L5] gi|302568386|gb|ADL44588.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315408694|gb|ADU06811.1| SsrA-binding protein [Micromonospora sp. L5] Length = 159 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 105/150 (70%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KVV+ N+KAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A + EI+L Sbjct: 5 KGRKVVASNKKARHDYAILDTYEAGMALTGTEVKSLRAGRASLVDAFAQERDGEIYLHAM 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY Q NH PRR RKLLL++ EI RL ++ G+TLVP+++YF+ G AK+++ Sbjct: 65 HIPEYAQGTWTNHEPRRTRKLLLNRLEIDRLLGKLKESGLTLVPLQVYFSD-GWAKVEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK+YDKR+ KRD DR+ R + Sbjct: 124 LARGKKSYDKRQDLAKRDADREIARAVGRR 153 >gi|237729535|ref|ZP_04560016.1| SsrA-binding protein [Citrobacter sp. 30_2] gi|226908141|gb|EEH94059.1| SsrA-binding protein [Citrobacter sp. 30_2] Length = 173 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 14 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 73 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + + P R RKLLL++RE+ LY + RDG T+V + +Y+ Sbjct: 74 GEAFLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRMNRDGYTVVALSLYWK- 132 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 133 NAWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKN 170 >gi|167767905|ref|ZP_02439958.1| hypothetical protein CLOSS21_02446 [Clostridium sp. SS2/1] gi|167710234|gb|EDS20813.1| hypothetical protein CLOSS21_02446 [Clostridium sp. SS2/1] Length = 161 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + K++++N+KAR++Y + SFEAGIVL GTEVKSLR +I +S+ +N Sbjct: 2 MIMSKAKTDGIKLIANNKKARHDYFVEDSFEAGIVLHGTEVKSLRQGHCSIKESFVDIDN 61 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLLL K EI ++ + + G TL+P+K+YF+ Sbjct: 62 GEVFIHQMHISPYEKGNIFNKDPLRTRKLLLHKSEISKMIGQINQKGYTLIPLKVYFSGS 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+ + L +GKK YDKR+ KRD R+ R + N Sbjct: 122 -LVKVQIGLCKGKKLYDKRQDISKRDQLREAQRDFKVRN 159 >gi|84500548|ref|ZP_00998797.1| SsrA-binding protein [Oceanicola batsensis HTCC2597] gi|84391501|gb|EAQ03833.1| SsrA-binding protein [Oceanicola batsensis HTCC2597] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + NP KV+++NR+ARY+Y I E GIVL G+EVKSLR N+++SYAT ++ Sbjct: 1 MA-NEKTNPNYKVIAENRRARYDYAIEEDLECGIVLEGSEVKSLREGGSNVAESYATVDD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H RR RKLL+S++E+ RL+ A R GMTLVP+ +YFN + Sbjct: 60 GELWLVNSYIAPYDQAKTFGHEERRRRKLLVSRKELARLWQATARKGMTLVPLVLYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G+AK+ + +A+GKK DKR+T KRDW+RQK R+L++ Sbjct: 120 GIAKLKIGIAKGKKTVDKRDTSAKRDWNRQKQRLLKQ 156 >gi|99082322|ref|YP_614476.1| SsrA-binding protein [Ruegeria sp. TM1040] gi|122397597|sp|Q1GDQ2|SSRP_SILST RecName: Full=SsrA-binding protein gi|99038602|gb|ABF65214.1| SsrA-binding protein [Ruegeria sp. TM1040] Length = 158 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 83/158 (52%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P KV+++NR+AR++Y I + E GI+L G+EVKSLR NI++SYA E Sbjct: 1 MA-KQKTDPNYKVIAENRRARFDYAIEQDLECGIMLEGSEVKSLRAGGSNIAESYAAVEE 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN + Sbjct: 60 GELWLVNSYIAPYEQAKVFKHEERRRRKLLVSRKEMADLWNATQRKGMTLVPLVLYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AKI + +A+GKKN+DKRE + KRDW RQK R+L++H Sbjct: 120 GMAKIKIGIAKGKKNHDKREAQAKRDWSRQKQRLLKDH 157 >gi|238920940|ref|YP_002934455.1| SsrA-binding protein [Edwardsiella ictaluri 93-146] gi|259511421|sp|C5BAL3|SSRP_EDWI9 RecName: Full=SsrA-binding protein gi|238870509|gb|ACR70220.1| SsrA-binding protein, putative [Edwardsiella ictaluri 93-146] Length = 160 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR++Y I FEAG+ L G EVKSLR K NIS+SY +N Sbjct: 1 MTKKKAYKPGSATIAMNKRARHDYFIEEEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+ Sbjct: 61 GEAFLFGATFTPLNVASSHVVCDPTRTRKLLLKERELASLFGSANRDGYTIVPLSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR+ K R+W + K RI++ N Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKTREWKQDKARIMKNAN 159 >gi|284029704|ref|YP_003379635.1| SsrA-binding protein [Kribbella flavida DSM 17836] gi|283808997|gb|ADB30836.1| SsrA-binding protein [Kribbella flavida DSM 17836] Length = 156 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K ++ NRKAR++YHI EAG+VLTGTEVKSLR+ + ++ D++A+ +E+WL Sbjct: 3 KQTGQKPIAQNRKARHDYHIDDVVEAGLVLTGTEVKSLRLGRASLVDAFASVRGNELWLQ 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY NH PRR RKLLL + E+ +L A+ + G+TLVP+ +YF G AK++ Sbjct: 63 NMHIPEYTHGTWTNHEPRRTRKLLLHRDEMQKLIKAIEQQGVTLVPLSLYFKD-GYAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA A+GKK+YDKR +R R+ R L E Sbjct: 122 LATARGKKDYDKRHALAERQASREAQRALSER 153 >gi|238793792|ref|ZP_04637413.1| hypothetical protein yinte0001_6940 [Yersinia intermedia ATCC 29909] gi|238726856|gb|EEQ18389.1| hypothetical protein yinte0001_6940 [Yersinia intermedia ATCC 29909] Length = 164 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLLGKVNRDGFTVVALSVYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQLDKARIMKHAN 163 >gi|91977113|ref|YP_569772.1| SsrA-binding protein [Rhodopseudomonas palustris BisB5] gi|123735399|sp|Q136W8|SSRP_RHOPS RecName: Full=SsrA-binding protein gi|91683569|gb|ABE39871.1| SsrA-binding protein [Rhodopseudomonas palustris BisB5] Length = 157 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 93/156 (59%), Positives = 118/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E Sbjct: 1 MADKNERAIKVVAENRKARFNYAIEDTIEAGISLTGTEVKSVRSGKSTIAESYADSRGGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R GMTL+P+K+YFN KG Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLIPLKLYFNEKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LALA+GK+ +DKRETEKKRDW R+K R+LR Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSREKGRLLRAR 156 >gi|148654370|ref|YP_001274575.1| SsrA-binding protein [Roseiflexus sp. RS-1] gi|166223447|sp|A5UPS2|SSRP_ROSS1 RecName: Full=SsrA-binding protein gi|148566480|gb|ABQ88625.1| SsrA-binding protein [Roseiflexus sp. RS-1] Length = 158 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 +RGN ++VV+DNRKAR++Y I ++EAGI LTG+E+KS+R +VN+ Y + E W Sbjct: 2 ARGNDIERVVADNRKARHDYFIEETYEAGIALTGSEIKSIRAGQVNLRGGYVRIVDGEAW 61 Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L + +I Y Q+ FNH P R RKLLL +REI R+ V R G TLVP+++Y + A Sbjct: 62 LYDVHIAPYEQSGAYFNHEPTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGR-RA 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ LA+GKK YDKR+ +R+ R R L+E Sbjct: 121 KVEIGLARGKKLYDKRDDIARREARRDIERALKER 155 >gi|331695048|ref|YP_004331287.1| SsrA-binding protein [Pseudonocardia dioxanivorans CB1190] gi|326949737|gb|AEA23434.1| SsrA-binding protein [Pseudonocardia dioxanivorans CB1190] Length = 161 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 106/153 (69%), Gaps = 4/153 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +KV++ NR+AR++Y I+ ++EAG+ L GTEVKSLR+ + +++D++AT ++ E Sbjct: 1 MKEK---GRKVIAQNRRARHDYSILDTYEAGVALLGTEVKSLRLGRASLADAFATIDDGE 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL +IPEY + NH PRR RKLLL + EI RL R G+TLVP+ +YFN G Sbjct: 58 VWLRGLHIPEYTHGSWTNHEPRRTRKLLLHRAEIERLVGKTREGGLTLVPLSLYFNE-GK 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K ++ALA+GKK+YDKR+ KRD +R+ R Sbjct: 117 VKCEVALAKGKKSYDKRQDLAKRDAEREVRREF 149 >gi|39935754|ref|NP_948030.1| SsrA-binding protein [Rhodopseudomonas palustris CGA009] gi|192291341|ref|YP_001991946.1| SsrA-binding protein [Rhodopseudomonas palustris TIE-1] gi|61216537|sp|Q6N6C9|SSRP_RHOPA RecName: Full=SsrA-binding protein gi|229559893|sp|B3QJG5|SSRP_RHOPT RecName: Full=SsrA-binding protein gi|39649607|emb|CAE28129.1| small protein B [Rhodopseudomonas palustris CGA009] gi|192285090|gb|ACF01471.1| SsrA-binding protein [Rhodopseudomonas palustris TIE-1] Length = 157 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 92/156 (58%), Positives = 118/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KVV++NRKAR+NY I + E GI LTGTEVKS+R K I++SYA E Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIDDTIEVGIALTGTEVKSIRNGKTTIAESYADARGSE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLIGAVEREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LALA+GKK +DKRETEKKRDW R+K R+LR Sbjct: 121 AKLQLALAKGKKLHDKRETEKKRDWSREKGRLLRSR 156 >gi|320182467|gb|EFW57361.1| tmRNA-binding protein SmpB [Shigella boydii ATCC 9905] Length = 160 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTIVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|300741816|ref|ZP_07071837.1| SsrA-binding protein [Rothia dentocariosa M567] gi|300381001|gb|EFJ77563.1| SsrA-binding protein [Rothia dentocariosa M567] Length = 164 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 5/163 (3%) Query: 1 MSLKSR----GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56 M+ K + +P +++ N+KAR+NY+IV ++EAG+VL GTEVKSLR +I+D + Sbjct: 1 MAQKKKKGAKTDPNNSIIAQNKKARHNYNIVDTYEAGVVLLGTEVKSLRDGGASITDGFC 60 Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 ++ E+WL +I EY NH RR+RKLLL + EI+RL ++ G T+VP+K+Y Sbjct: 61 HVKDHELWLEGIHIAEYGYGTWTNHSARRSRKLLLHRSEINRLEQKLKETGYTVVPLKLY 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 F+ G K+++ALA GK+ YDKR+ ++R + + R +R N Sbjct: 121 FSG-GRVKVEIALATGKREYDKRQALRERQDNLEAARAMRYRN 162 >gi|226227387|ref|YP_002761493.1| SsrA-binding protein [Gemmatimonas aurantiaca T-27] gi|226090578|dbj|BAH39023.1| SsrA-binding protein [Gemmatimonas aurantiaca T-27] Length = 156 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++++ N++AR++Y I+ ++EAGIVLTGTEVK+LR + N++D++ ++ Sbjct: 1 MATKD-TDEQNELIARNKRARHDYEILETWEAGIVLTGTEVKALRDGRANLTDAFGIVKD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y Q N FNH P R RKLLL +REI RL AV R G+TLVP+ +YF Sbjct: 60 SEVFLLNLHIGAYGQGNMFNHEPTRTRKLLLHRREIRRLIGAVERQGLTLVPLDLYFKD- 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K +ALA+GK+ +D+RE K+RD DR+ R LR Sbjct: 119 GRVKTRIALARGKQLHDRREDIKRRDADREIARALRHR 156 >gi|152967722|ref|YP_001363506.1| SsrA-binding protein [Kineococcus radiotolerans SRS30216] gi|189046831|sp|A6WEK3|SSRP_KINRD RecName: Full=SsrA-binding protein gi|151362239|gb|ABS05242.1| SsrA-binding protein [Kineococcus radiotolerans SRS30216] Length = 156 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KV++ NRKAR++Y I +EAG+ L GTEVK+LR+ + ++ D +A + E+WL Sbjct: 5 TGRKVIASNRKARHDYFIDDVYEAGVSLMGTEVKALRMGRASLVDGFAHIDRGEMWLEGV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY+Q NH PRR RKLLL + EI R VR G+T+VP+ +YF G K+++ Sbjct: 65 HIPEYVQGTWTNHTPRRKRKLLLHREEIDRWAGKVRESGLTIVPLALYFLD-GRVKVEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKKNYDKR ++R R+ R + E Sbjct: 124 LARGKKNYDKRHALRERQDRREADRAMSER 153 >gi|313903091|ref|ZP_07836485.1| SsrA-binding protein [Thermaerobacter subterraneus DSM 13965] gi|313466593|gb|EFR62113.1| SsrA-binding protein [Thermaerobacter subterraneus DSM 13965] Length = 155 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 ++V++NRKAR++Y + +FEAG+VLTGTE+KS+R +VN+ DS+A E E+WL Sbjct: 6 DGVRLVAENRKARHDYFVDETFEAGLVLTGTEIKSIRAGRVNLRDSHARVERGEVWLYGV 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y NRFNH P R RKLLL +REI L VR G TLVP+K+Y G AK++LA Sbjct: 66 HIAPYEHGNRFNHEPDRPRKLLLHRREIDYLAGRVRERGYTLVPLKLYLKG-GWAKVELA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK+YDKR T +R+ R+ + LR Sbjct: 125 LARGKKSYDKRATIAQREAQRRIAQALRAR 154 >gi|291299380|ref|YP_003510658.1| SsrA-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290568600|gb|ADD41565.1| SsrA-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 159 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 70/152 (46%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K+++ NRKAR++Y I+ ++EAGIVLTGTEVKSLR + +++D+YA N E+ + Sbjct: 3 KEKGHKLITSNRKARHDYTILDTYEAGIVLTGTEVKSLRNGRASLADAYADLHNGELRIH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I EY + NH PRR RKLLL + EI +L + G+TLVP+ +YF G AK++ Sbjct: 63 GIHIAEYDNGSWTNHPPRRIRKLLLHRAEIDKLVGKLTESGLTLVPLSLYFRD-GWAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + LA+GKK+YDKR+ KRD DR+ R L Sbjct: 122 IGLARGKKSYDKRQDLAKRDSDREIERALHRR 153 >gi|146312741|ref|YP_001177815.1| SsrA-binding protein [Enterobacter sp. 638] gi|145319617|gb|ABP61764.1| SsrA-binding protein [Enterobacter sp. 638] Length = 168 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 9 MTKKKVHKPGSATIALNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVILID 68 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ + P R RKLLL++RE+ L+ + R+G T+V + +Y+ Sbjct: 69 GEAFLFGANFTPLAVASSHYVCDPIRTRKLLLNQRELESLFGRINREGYTVVALSLYWK- 127 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K R+W K RI++ Sbjct: 128 NAWCKVKIGVAKGKKQHDKRSDLKDREWQVDKARIMKH 165 >gi|110225269|dbj|BAE97620.1| SsrA-binding protein [Agromyces sp. KY5R] Length = 159 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 110/159 (69%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K +K+++ N+KAR+ YHI+ ++EAG+VLTG+EVKSLR+ + ++ D Y E Sbjct: 1 MSPKE---TGEKLIASNKKARHEYHILDTYEAGLVLTGSEVKSLRMGRASLVDGYVFIER 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +YIPEYL + NH PRR RKLLL +++I +LY R GMT+VP+++YF Sbjct: 58 GEAWLDAAYIPEYLNGSWTNHAPRRKRKLLLHRQQIDKLYQKTREGGMTIVPLRLYFLD- 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+++ALA+GKK YDKR+T ++R R+ R +R N Sbjct: 117 GRAKVEIALAKGKKEYDKRQTMRERQDKREAERAMRTRN 155 >gi|16761540|ref|NP_457157.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766003|ref|NP_461618.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143011|ref|NP_806353.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414653|ref|YP_151728.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|167553509|ref|ZP_02347258.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992470|ref|ZP_02573568.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168234213|ref|ZP_02659271.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244713|ref|ZP_02669645.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168262137|ref|ZP_02684110.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168823033|ref|ZP_02835033.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446602|ref|YP_002041949.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194447849|ref|YP_002046691.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470044|ref|ZP_03076028.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194734381|ref|YP_002115697.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248802|ref|YP_002147623.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263461|ref|ZP_03163535.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197363580|ref|YP_002143217.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200387705|ref|ZP_03214317.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353724|ref|YP_002227525.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858035|ref|YP_002244686.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213027768|ref|ZP_03342215.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052721|ref|ZP_03345599.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416794|ref|ZP_03349938.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213424852|ref|ZP_03357602.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650040|ref|ZP_03380093.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224584539|ref|YP_002638337.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909530|ref|ZP_04653367.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|61247728|sp|P0A2G1|SSRP_SALTY RecName: Full=SsrA-binding protein gi|61247729|sp|P0A2G2|SSRP_SALTI RecName: Full=SsrA-binding protein gi|67461315|sp|Q5PFG2|SSRP_SALPA RecName: Full=SsrA-binding protein gi|187631661|sp|Q57L18|SSRP_SALCH RecName: Full=SsrA-binding protein gi|187631662|sp|A9MZ63|SSRP_SALPB RecName: Full=SsrA-binding protein gi|226706530|sp|B5F2A0|SSRP_SALA4 RecName: Full=SsrA-binding protein gi|226706531|sp|B5QUH5|SSRP_SALEP RecName: Full=SsrA-binding protein gi|226706532|sp|B5RD96|SSRP_SALG2 RecName: Full=SsrA-binding protein gi|226706533|sp|B4TS67|SSRP_SALSV RecName: Full=SsrA-binding protein gi|238689951|sp|B5BEA6|SSRP_SALPK RecName: Full=SsrA-binding protein gi|238690625|sp|B4TE63|SSRP_SALHS RecName: Full=SsrA-binding protein gi|238693593|sp|B4T2C5|SSRP_SALNS RecName: Full=SsrA-binding protein gi|254778377|sp|C0PW29|SSRP_SALPC RecName: Full=SsrA-binding protein gi|25317478|pir||AC0835 SsrA (tmRNA)-binding protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421235|gb|AAL21577.1| small protein B [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503841|emb|CAD05866.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29138644|gb|AAO70213.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128910|gb|AAV78416.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194405265|gb|ACF65487.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406153|gb|ACF66372.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194456408|gb|EDX45247.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194709883|gb|ACF89104.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197095057|emb|CAR60603.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212505|gb|ACH49902.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241716|gb|EDY24336.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199604803|gb|EDZ03348.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273505|emb|CAR38482.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205322056|gb|EDZ09895.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329322|gb|EDZ16086.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205331835|gb|EDZ18599.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336461|gb|EDZ23225.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340643|gb|EDZ27407.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349260|gb|EDZ35891.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709838|emb|CAR34190.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469066|gb|ACN46896.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247878|emb|CBG25708.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994832|gb|ACY89717.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159247|emb|CBW18762.1| SsrA (tmRNA)-binding protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|321223479|gb|EFX48544.1| tmRNA-binding protein SmpB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|326624453|gb|EGE30798.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 160 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157 >gi|220934138|ref|YP_002513037.1| SsrA-binding protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995448|gb|ACL72050.1| SsrA-binding protein [Thioalkalivibrio sp. HL-EbGR7] Length = 157 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS +++ ++ N+KAR+ Y I FEAG+ L G EVKSLR +V +++SY ++ Sbjct: 1 MSKQAKQ-AGTSTIALNKKARHEYFIEERFEAGLALEGWEVKSLRDGRVQLNESYVLIKD 59 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++I + + P R+RKLLL K E+++L V R G TL P+ +Y+ Sbjct: 60 GEAWLFGAHISPLPTASTHIHPDPMRSRKLLLHKEELNKLIGQVERKGYTLTPLALYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +G AK+++ LA+GKK +DKR T K RDW R+K R L++ Sbjct: 119 RGRAKLEIGLAKGKKEHDKRATIKDRDWQREKERALKK 156 >gi|251790878|ref|YP_003005599.1| SsrA-binding protein [Dickeya zeae Ech1591] gi|247539499|gb|ACT08120.1| SsrA-binding protein [Dickeya zeae Ech1591] Length = 160 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEIEAGLALQGWEVKSLRAGKANISDSYVLMRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATFTPLHGASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKRE K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKEHDKREDIKEREWKLDKARIMKN 157 >gi|119511610|ref|ZP_01630717.1| SsrA-binding protein [Nodularia spumigena CCY9414] gi|119463771|gb|EAW44701.1| SsrA-binding protein [Nodularia spumigena CCY9414] Length = 155 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 105/159 (66%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS KS+ KV+SDNR+ARY Y I+ +FEAG+ LTGTEVKS+R +VN+ D YA N Sbjct: 1 MSEKSQS---YKVISDNRQARYLYEILETFEAGVELTGTEVKSIRAGRVNLQDGYALIRN 57 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL N +I Y FNH PRR RKLLL ++EI +L V ++G+TLVP+K+Y Sbjct: 58 GEAWLINVHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQEGLTLVPLKMYLK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G K+ +AL +GKK +DKRE+ K+R R R ++ + Sbjct: 117 RGWVKVSIALGKGKKLHDKRESLKRRQDQRDMQRAMKNY 155 >gi|120556277|ref|YP_960628.1| SsrA-binding protein [Marinobacter aquaeolei VT8] gi|187611485|sp|A1U622|SSRP_MARAV RecName: Full=SsrA-binding protein gi|120326126|gb|ABM20441.1| SsrA-binding protein [Marinobacter aquaeolei VT8] Length = 160 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K P ++ N+KA++ YHI FEAG+ L G EVKSLR K + D+Y ++ Sbjct: 1 MSKKKANAPTSNTIALNKKAKHEYHIEERFEAGLALLGWEVKSLRAGKAQLVDAYVLLKD 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL +EI ++ V + G T +P+ +Y+ Sbjct: 61 GEAWLLGSHITPLNTASTHVIADPTRTRKLLLHAKEIAKIVGQVNQAGYTCIPLALYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K K ++AL +GKK +DKR TEK+RDW+RQK RI+RE N Sbjct: 120 KNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRIMREAN 159 >gi|298291609|ref|YP_003693548.1| SsrA-binding protein [Starkeya novella DSM 506] gi|296928120|gb|ADH88929.1| SsrA-binding protein [Starkeya novella DSM 506] Length = 157 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 87/156 (55%), Positives = 119/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KKVV+DNR+AR++Y I FEAGI L+GTEVKSLR K +++SY + + E Sbjct: 1 MAEKKTQAKKVVADNRRARFDYEIGEVFEAGIALSGTEVKSLRGGKATVAESYVSAKTGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 L NS+IPEYLQANRFNH PRR RKLL+ KREI +L+ AV R+GMT+VP++IYFN +G Sbjct: 61 AILYNSFIPEYLQANRFNHEPRRPRKLLMHKREIAKLWQAVEREGMTVVPLRIYFNEQGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++LA+A+G+K +DKRE K++DW R K R++R+ Sbjct: 121 AKVELAIARGRKAHDKREALKEKDWARDKQRLMRDR 156 >gi|313109750|ref|ZP_07795690.1| SmpB protein [Pseudomonas aeruginosa 39016] gi|310882192|gb|EFQ40786.1| SmpB protein [Pseudomonas aeruginosa 39016] Length = 253 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KA ++Y I + FEAG+ L G EVKSLR K + DSY ++ Sbjct: 95 MAKQKKHPSG--TIAQNKKALHDYFIEQRFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 152 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL KRE+ +L+ AV++ G V + +Y+ Sbjct: 153 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLHKRELGKLFGAVQQKGYACVALSMYWKK 212 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K ++ALA+GKK++DKR TEK+RD DR+ R +R Sbjct: 213 H-LVKCEIALAKGKKDFDKRHTEKERDSDREIQRAMRH 249 >gi|187631660|sp|A9MGS5|SSRP_SALAR RecName: Full=SsrA-binding protein Length = 160 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKH 157 >gi|311111707|ref|YP_003982929.1| SsrA-binding protein [Rothia dentocariosa ATCC 17931] gi|310943201|gb|ADP39495.1| SsrA-binding protein [Rothia dentocariosa ATCC 17931] Length = 164 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 105/163 (64%), Gaps = 5/163 (3%) Query: 1 MSLKSR----GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56 M+ K + +P +++ N+KAR+NY+IV ++EAG+VL GTEVKSLR +I+D + Sbjct: 1 MAQKKKKGSKTDPNNSIIAQNKKARHNYNIVDTYEAGMVLLGTEVKSLRDGGASITDGFC 60 Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 ++ E+WL +I EY NH RR+RKLLL + EI+RL ++ G T+VP+K+Y Sbjct: 61 HVKDHELWLEGIHIAEYGYGTWTNHSARRSRKLLLHRSEINRLEQKLKETGYTVVPLKLY 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 F+ G K+++ALA GK+ YDKR+ ++R + + R +R N Sbjct: 121 FSG-GRVKVEIALATGKREYDKRQALRERQDNLEAARAMRYRN 162 >gi|163852607|ref|YP_001640650.1| SsrA-binding protein [Methylobacterium extorquens PA1] gi|218531448|ref|YP_002422264.1| SsrA-binding protein [Methylobacterium chloromethanicum CM4] gi|240139941|ref|YP_002964418.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium extorquens AM1] gi|254562364|ref|YP_003069459.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium extorquens DM4] gi|226706527|sp|A9VYY7|SSRP_METEP RecName: Full=SsrA-binding protein gi|254778368|sp|B7KVC8|SSRP_METC4 RecName: Full=SsrA-binding protein gi|163664212|gb|ABY31579.1| SsrA-binding protein [Methylobacterium extorquens PA1] gi|218523751|gb|ACK84336.1| SsrA-binding protein [Methylobacterium chloromethanicum CM4] gi|240009915|gb|ACS41141.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium extorquens AM1] gi|254269642|emb|CAX25614.1| trans-translation protein, binds tmRNA and tRNA [Methylobacterium extorquens DM4] Length = 157 Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 83/156 (53%), Positives = 117/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P ++VV+DNR ARY+Y I + EAGI LTGTEVKSLR K I +SYA ++ Sbjct: 1 MAPKPDPGRRVVADNRSARYHYAIEDTLEAGIALTGTEVKSLRGGKATIGESYAGPSGND 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 + L N+YIPEYL+ANRFNH +R R+LLL +R+I++L A +R G T++P+KIYFN KG Sbjct: 61 LMLFNAYIPEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVIPLKIYFNDKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++L L +GK+ +DKRE+ K+RDWDR K R++R+ Sbjct: 121 AKVELGLGKGKQLHDKRESVKQRDWDRDKARLMRDK 156 >gi|75908542|ref|YP_322838.1| SsrA-binding protein [Anabaena variabilis ATCC 29413] gi|123609519|sp|Q3MAP3|SSRP_ANAVT RecName: Full=SsrA-binding protein gi|75702267|gb|ABA21943.1| SsrA-binding protein [Anabaena variabilis ATCC 29413] Length = 155 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS KS KV++DNR+ARY Y I+ +FEAGI LTGTEVKS+R KVN+ D YA + Sbjct: 1 MSDKSES---YKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRD 57 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EIWL N++I Y FNH PRR RKLLL ++EI +L V + G+TLVP+K+Y Sbjct: 58 GEIWLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G K+ +AL +GKK +DKRE+ K+R R R ++ + Sbjct: 117 RGWVKVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY 155 >gi|309791415|ref|ZP_07685922.1| SsrA-binding protein [Oscillochloris trichoides DG6] gi|308226548|gb|EFO80269.1| SsrA-binding protein [Oscillochloris trichoides DG6] Length = 158 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 78/160 (48%), Positives = 112/160 (70%), Gaps = 5/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + VV+DNRKAR++Y I ++EAGIVLTG+E+KS+R ++N+ S+A N Sbjct: 1 MSSK---DTGPGVVADNRKARHDYLIEETYEAGIVLTGSEIKSVRAGRINLRGSFARIFN 57 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DEI+L +S+I Y Q+ FNH P R RKLLL +REI RL +R+ G+T+VP+K+YF Sbjct: 58 DEIFLYDSHISPYEQSGTYFNHVPTRPRKLLLHRREISRLDGLIRQKGLTIVPLKVYFKG 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + AK++L +A+GKKNYDKRE KRD +R R+++ + Sbjct: 118 R-RAKVELGVARGKKNYDKREDIAKRDAERDIERVMKSRD 156 >gi|226328164|ref|ZP_03803682.1| hypothetical protein PROPEN_02055 [Proteus penneri ATCC 35198] gi|225203868|gb|EEG86222.1| hypothetical protein PROPEN_02055 [Proteus penneri ATCC 35198] Length = 160 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKSHKPGSATIALNKRARHEYFIEDEIEAGLALQGWEVKSLRAGKANISDSYVVMRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + + P R RKLLL +RE+ LY + RDG T+V + +Y+ Sbjct: 61 GEAYLFGATVTPLNVASTHVVCDPTRTRKLLLKQRELDNLYGQINRDGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + +A+GKK++DKRET K R+W K RI++ N Sbjct: 120 NAWCKIKIGVAKGKKDHDKRETIKDREWKLDKARIMKNAN 159 >gi|237809008|ref|YP_002893448.1| SsrA-binding protein [Tolumonas auensis DSM 9187] gi|259511432|sp|C4L8Z2|SSRP_TOLAT RecName: Full=SsrA-binding protein gi|237501269|gb|ACQ93862.1| SsrA-binding protein [Tolumonas auensis DSM 9187] Length = 160 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS ++ N+KAR++Y I +EAG+ L G EVKSLR K +I DSY +N Sbjct: 1 MSKNKTKKGGDSTIALNKKARHDYFIEDKYEAGLALQGWEVKSLRAGKAHIGDSYVLLQN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL K E+ RL V R TL+P+ +Y++ Sbjct: 61 GEAFLFGATITPLNVASTHVVCDPTRIRKLLLKKSELERLIGLVERQSYTLIPLSMYWS- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + K+++ LA+GKK +DKRE K+R+W R K R+++ Sbjct: 120 RAWVKVEIGLAKGKKEHDKREDLKEREWQRDKERMMKNK 158 >gi|110642780|ref|YP_670510.1| SsrA-binding protein [Escherichia coli 536] gi|123343725|sp|Q0TEM0|SSRP_ECOL5 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|110344372|gb|ABG70609.1| SsrA-binding protein [Escherichia coli 536] Length = 160 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|157148132|ref|YP_001455451.1| hypothetical protein CKO_03942 [Citrobacter koseri ATCC BAA-895] gi|166222378|sp|A8ANF2|SSRP_CITK8 RecName: Full=SsrA-binding protein gi|157085337|gb|ABV15015.1| hypothetical protein CKO_03942 [Citrobacter koseri ATCC BAA-895] Length = 160 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157 >gi|304311932|ref|YP_003811530.1| SsrA-binding protein [gamma proteobacterium HdN1] gi|301797665|emb|CBL45886.1| SsrA-binding protein [gamma proteobacterium HdN1] Length = 157 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS +G+ ++ NRKAR+ +HI +FEAG++L G EVKSLR KV+ ++SY ++ Sbjct: 1 MSKAKKGDS-DNSIAQNRKARHEFHIEDTFEAGLMLEGWEVKSLRAGKVSFNESYVLMKD 59 Query: 61 DEIWLTNSYIPE-YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L +I + P R RKLLL RE+ +++ A+ + G T VP+ +Y+ Sbjct: 60 GEAFLWGMHISPLLSASTHVTPNPTRTRKLLLHARELGKIHGAITKKGYTCVPLSLYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK +ALA GK+ +DKR+ EK RDW+R+K R++R+ Sbjct: 119 NGRAKCLIALATGKQTHDKRQAEKSRDWNREKQRLVRK 156 >gi|149203291|ref|ZP_01880261.1| SsrA-binding protein [Roseovarius sp. TM1035] gi|149143124|gb|EDM31163.1| SsrA-binding protein [Roseovarius sp. TM1035] Length = 158 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 121/158 (76%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K++ NP KV+++NR+ARY+Y I E GI+L G+EVKSLRV+ NI++SYA EN Sbjct: 1 MA-KAKENPNYKVIAENRRARYDYAIEDDLECGIILGGSEVKSLRVNSANIAESYAMVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H +R RKLL+SK+E+ RL++ +R GMTLVP+ +YFN + Sbjct: 60 GELWLVNSYIAPYEQAKTFGHDEKRRRKLLVSKKELSRLWSETQRKGMTLVPLVLYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AK+ + +A+GKKN+DKRETE KRDW RQK R+L++H Sbjct: 120 GMAKLKIGIAKGKKNHDKRETEAKRDWARQKQRLLKDH 157 >gi|85715066|ref|ZP_01046050.1| SsrA-binding protein [Nitrobacter sp. Nb-311A] gi|85697981|gb|EAQ35854.1| SsrA-binding protein [Nitrobacter sp. Nb-311A] Length = 157 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 94/156 (60%), Positives = 122/156 (78%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +G KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E Sbjct: 1 MAGKGERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSIRNGKTTIAESYADSKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL NS IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINSNIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVDREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR Sbjct: 121 AKLLLAIAKGKKLHDKRESEKKRDWGREKGRLLRAR 156 >gi|17232562|ref|NP_489110.1| SsrA-binding protein [Nostoc sp. PCC 7120] gi|22096164|sp|Q8YM70|SSRP_ANASP RecName: Full=SsrA-binding protein gi|17134208|dbj|BAB76769.1| tmRNA-binding protein [Nostoc sp. PCC 7120] Length = 155 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 78/159 (49%), Positives = 105/159 (66%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS KS KV++DNR+ARY Y I+ +FEAGI LTGTEVKS+R KVN+ D YA + Sbjct: 1 MSDKSES---YKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRD 57 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EIWL N++I Y FNH PRR RKLLL ++EI +L V + G+TLVP+K+Y Sbjct: 58 GEIWLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G K+ +AL +GKK +DKRE+ K+R R R ++ + Sbjct: 117 RGWVKVSIALGKGKKLHDKRESLKRRQDQRDMQRAMKNY 155 >gi|15832736|ref|NP_311509.1| SsrA-binding protein [Escherichia coli O157:H7 str. Sakai] gi|16130539|ref|NP_417110.1| trans-translation protein [Escherichia coli str. K-12 substr. MG1655] gi|24113957|ref|NP_708467.1| SsrA-binding protein [Shigella flexneri 2a str. 301] gi|26248984|ref|NP_755024.1| SsrA-binding protein [Escherichia coli CFT073] gi|30064018|ref|NP_838189.1| SsrA-binding protein [Shigella flexneri 2a str. 2457T] gi|74313176|ref|YP_311595.1| SsrA-binding protein [Shigella sonnei Ss046] gi|82545163|ref|YP_409110.1| SsrA-binding protein [Shigella boydii Sb227] gi|82777978|ref|YP_404327.1| SsrA-binding protein [Shigella dysenteriae Sd197] gi|89109420|ref|AP_003200.1| trans-translation protein [Escherichia coli str. K-12 substr. W3110] gi|91211955|ref|YP_541941.1| SsrA-binding protein [Escherichia coli UTI89] gi|110806714|ref|YP_690234.1| SsrA-binding protein [Shigella flexneri 5 str. 8401] gi|117624840|ref|YP_853753.1| SsrA-binding protein [Escherichia coli APEC O1] gi|157155286|ref|YP_001463939.1| SsrA-binding protein [Escherichia coli E24377A] gi|157162095|ref|YP_001459413.1| SsrA-binding protein [Escherichia coli HS] gi|168752580|ref|ZP_02777602.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168755362|ref|ZP_02780369.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168762412|ref|ZP_02787419.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168768707|ref|ZP_02793714.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168774854|ref|ZP_02799861.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168778596|ref|ZP_02803603.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168789522|ref|ZP_02814529.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC869] gi|168800499|ref|ZP_02825506.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC508] gi|170019104|ref|YP_001724058.1| SsrA-binding protein [Escherichia coli ATCC 8739] gi|170082222|ref|YP_001731542.1| trans-translation protein [Escherichia coli str. K-12 substr. DH10B] gi|170679596|ref|YP_001744803.1| SsrA-binding protein [Escherichia coli SMS-3-5] gi|170765851|ref|ZP_02900662.1| SsrA-binding protein [Escherichia albertii TW07627] gi|187732010|ref|YP_001881410.1| SsrA-binding protein [Shigella boydii CDC 3083-94] gi|191167080|ref|ZP_03028901.1| SsrA-binding protein [Escherichia coli B7A] gi|191171403|ref|ZP_03032952.1| SsrA-binding protein [Escherichia coli F11] gi|193065979|ref|ZP_03047038.1| SsrA-binding protein [Escherichia coli E22] gi|194427889|ref|ZP_03060435.1| SsrA-binding protein [Escherichia coli B171] gi|194433009|ref|ZP_03065292.1| SsrA-binding protein [Shigella dysenteriae 1012] gi|194439464|ref|ZP_03071540.1| SsrA-binding protein [Escherichia coli 101-1] gi|195939671|ref|ZP_03085053.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4024] gi|208806356|ref|ZP_03248693.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208811865|ref|ZP_03253194.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208818883|ref|ZP_03259203.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209399817|ref|YP_002272089.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209920094|ref|YP_002294178.1| SsrA-binding protein [Escherichia coli SE11] gi|215487969|ref|YP_002330400.1| SsrA-binding protein [Escherichia coli O127:H6 str. E2348/69] gi|217327278|ref|ZP_03443361.1| SsrA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218547862|ref|YP_002381653.1| SsrA-binding protein [Escherichia fergusonii ATCC 35469] gi|218555199|ref|YP_002388112.1| SsrA-binding protein [Escherichia coli IAI1] gi|218559539|ref|YP_002392452.1| SsrA-binding protein [Escherichia coli S88] gi|218690737|ref|YP_002398949.1| SsrA-binding protein [Escherichia coli ED1a] gi|218696243|ref|YP_002403910.1| SsrA-binding protein [Escherichia coli 55989] gi|218701131|ref|YP_002408760.1| SsrA-binding protein [Escherichia coli IAI39] gi|218706120|ref|YP_002413639.1| SsrA-binding protein [Escherichia coli UMN026] gi|237706792|ref|ZP_04537273.1| trans-translation protein [Escherichia sp. 3_2_53FAA] gi|238901779|ref|YP_002927575.1| trans-translation protein [Escherichia coli BW2952] gi|253772487|ref|YP_003035318.1| SsrA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037695|ref|ZP_04871753.1| trans-translation protein [Escherichia sp. 1_1_43] gi|254162589|ref|YP_003045697.1| SsrA-binding protein [Escherichia coli B str. REL606] gi|254794565|ref|YP_003079402.1| SsrA-binding protein [Escherichia coli O157:H7 str. TW14359] gi|256019562|ref|ZP_05433427.1| SsrA-binding protein [Shigella sp. D9] gi|256024854|ref|ZP_05438719.1| SsrA-binding protein [Escherichia sp. 4_1_40B] gi|260845301|ref|YP_003223079.1| trans-translation protein SmpB [Escherichia coli O103:H2 str. 12009] gi|260856708|ref|YP_003230599.1| trans-translation protein SmpB [Escherichia coli O26:H11 str. 11368] gi|260869300|ref|YP_003235702.1| trans-translation protein SmpB [Escherichia coli O111:H- str. 11128] gi|261227502|ref|ZP_05941783.1| trans-translation protein [Escherichia coli O157:H7 str. FRIK2000] gi|261255696|ref|ZP_05948229.1| trans-translation protein SmpB [Escherichia coli O157:H7 str. FRIK966] gi|291283891|ref|YP_003500709.1| SsrA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|293406126|ref|ZP_06650052.1| SsrA-binding protein [Escherichia coli FVEC1412] gi|293412009|ref|ZP_06654732.1| SsrA-binding protein [Escherichia coli B354] gi|293415890|ref|ZP_06658530.1| SsrA-binding protein [Escherichia coli B185] gi|293448971|ref|ZP_06663392.1| SsrA-binding protein [Escherichia coli B088] gi|297516511|ref|ZP_06934897.1| SsrA-binding protein [Escherichia coli OP50] gi|298381860|ref|ZP_06991457.1| SsrA-binding protein [Escherichia coli FVEC1302] gi|300819940|ref|ZP_07100122.1| SsrA-binding protein [Escherichia coli MS 107-1] gi|300825178|ref|ZP_07105268.1| SsrA-binding protein [Escherichia coli MS 119-7] gi|300900193|ref|ZP_07118382.1| SsrA-binding protein [Escherichia coli MS 198-1] gi|300905059|ref|ZP_07122869.1| SsrA-binding protein [Escherichia coli MS 84-1] gi|300921166|ref|ZP_07137543.1| SsrA-binding protein [Escherichia coli MS 115-1] gi|300925614|ref|ZP_07141483.1| SsrA-binding protein [Escherichia coli MS 182-1] gi|300930654|ref|ZP_07146041.1| SsrA-binding protein [Escherichia coli MS 187-1] gi|300940958|ref|ZP_07155482.1| SsrA-binding protein [Escherichia coli MS 21-1] gi|300949016|ref|ZP_07163068.1| SsrA-binding protein [Escherichia coli MS 116-1] gi|300957405|ref|ZP_07169619.1| SsrA-binding protein [Escherichia coli MS 175-1] gi|300986799|ref|ZP_07177790.1| SsrA-binding protein [Escherichia coli MS 45-1] gi|300990710|ref|ZP_07179295.1| SsrA-binding protein [Escherichia coli MS 200-1] gi|301026403|ref|ZP_07189847.1| SsrA-binding protein [Escherichia coli MS 69-1] gi|301026771|ref|ZP_07190176.1| SsrA-binding protein [Escherichia coli MS 196-1] gi|301050491|ref|ZP_07197369.1| SsrA-binding protein [Escherichia coli MS 185-1] gi|301305735|ref|ZP_07211822.1| SsrA-binding protein [Escherichia coli MS 124-1] gi|301326741|ref|ZP_07220055.1| SsrA-binding protein [Escherichia coli MS 78-1] gi|301644063|ref|ZP_07244078.1| SsrA-binding protein [Escherichia coli MS 146-1] gi|306812463|ref|ZP_07446661.1| SsrA-binding protein [Escherichia coli NC101] gi|307139340|ref|ZP_07498696.1| SsrA-binding protein [Escherichia coli H736] gi|307315069|ref|ZP_07594653.1| SsrA-binding protein [Escherichia coli W] gi|309784636|ref|ZP_07679271.1| ssrA-binding protein [Shigella dysenteriae 1617] gi|309794131|ref|ZP_07688555.1| SsrA-binding protein [Escherichia coli MS 145-7] gi|312965551|ref|ZP_07779782.1| ssrA-binding protein [Escherichia coli 2362-75] gi|312973137|ref|ZP_07787310.1| ssrA-binding protein [Escherichia coli 1827-70] gi|331643336|ref|ZP_08344467.1| SsrA-binding protein [Escherichia coli H736] gi|331648362|ref|ZP_08349450.1| SsrA-binding protein [Escherichia coli M605] gi|331654076|ref|ZP_08355076.1| SsrA-binding protein [Escherichia coli M718] gi|331658767|ref|ZP_08359709.1| SsrA-binding protein [Escherichia coli TA206] gi|331664185|ref|ZP_08365094.1| SsrA-binding protein [Escherichia coli TA143] gi|331669370|ref|ZP_08370216.1| SsrA-binding protein [Escherichia coli TA271] gi|331674057|ref|ZP_08374819.1| SsrA-binding protein [Escherichia coli TA280] gi|331678610|ref|ZP_08379284.1| SsrA-binding protein [Escherichia coli H591] gi|331684275|ref|ZP_08384867.1| SsrA-binding protein [Escherichia coli H299] gi|67472569|sp|P0A832|SSRP_ECOLI RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|67472570|sp|P0A833|SSRP_ECOL6 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|67472571|sp|P0A834|SSRP_ECO57 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|67472572|sp|P0A835|SSRP_SHIFL RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|122422823|sp|Q1R8A4|SSRP_ECOUT RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|123047956|sp|Q0T186|SSRP_SHIF8 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|123558873|sp|Q31XC6|SSRP_SHIBS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|123561868|sp|Q32CW9|SSRP_SHIDS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|123616429|sp|Q3YYQ2|SSRP_SHISS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|166223216|sp|A1AEE9|SSRP_ECOK1 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|166979668|sp|A7ZQ60|SSRP_ECO24 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|166979669|sp|A8A3C6|SSRP_ECOHS RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|189046826|sp|B1IVL4|SSRP_ECOLC RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226706522|sp|B5Z237|SSRP_ECO5E RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226706523|sp|B6I641|SSRP_ECOSE RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226734251|sp|B7MIV7|SSRP_ECO45 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226734252|sp|B7NSB8|SSRP_ECO7I RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226734253|sp|B7M989|SSRP_ECO8A RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226734254|sp|B7N6K5|SSRP_ECOLU RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226734255|sp|B1LPC7|SSRP_ECOSM RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|226734256|sp|B7LUV4|SSRP_ESCF3 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|229559865|sp|B1XBU0|SSRP_ECODH RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|238691733|sp|B2TYP2|SSRP_SHIB3 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|254778359|sp|B7UH68|SSRP_ECO27 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|254778360|sp|B7LDK8|SSRP_ECO55 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|254778361|sp|B7MYQ8|SSRP_ECO81 RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|259511420|sp|C4ZYN7|SSRP_ECOBW RecName: Full=SsrA-binding protein; AltName: Full=Small protein B gi|26109390|gb|AAN81592.1|AE016764_274 SsrA-binding protein [Escherichia coli CFT073] gi|216668|dbj|BAA02062.1| small protein [Escherichia coli K-12] gi|1033116|gb|AAA79790.1| smpB [Escherichia coli str. K-12 substr. MG1655] gi|1788973|gb|AAC75669.1| trans-translation protein [Escherichia coli str. K-12 substr. MG1655] gi|13362953|dbj|BAB36905.1| small protein B [Escherichia coli O157:H7 str. Sakai] gi|24053066|gb|AAN44174.1| ssrA(tmRNA)-binding protein [Shigella flexneri 2a str. 301] gi|30042274|gb|AAP17999.1| ssrA(tmRNA)-binding protein [Shigella flexneri 2a str. 2457T] gi|51773739|emb|CAH23264.1| small protein B [Enterobacteria phage CP-1639] gi|73856653|gb|AAZ89360.1| small protein B [Shigella sonnei Ss046] gi|81242126|gb|ABB62836.1| small protein B [Shigella dysenteriae Sd197] gi|81246574|gb|ABB67282.1| small protein B [Shigella boydii Sb227] gi|85675484|dbj|BAA16505.2| trans-translation protein [Escherichia coli str. K12 substr. W3110] gi|91073529|gb|ABE08410.1| SsrA-binding protein [Escherichia coli UTI89] gi|110616262|gb|ABF04929.1| small protein B [Shigella flexneri 5 str. 8401] gi|115513964|gb|ABJ02039.1| trans-translation protein [Escherichia coli APEC O1] gi|157067775|gb|ABV07030.1| SsrA-binding protein [Escherichia coli HS] gi|157077316|gb|ABV17024.1| SsrA-binding protein [Escherichia coli E24377A] gi|169754032|gb|ACA76731.1| SsrA-binding protein [Escherichia coli ATCC 8739] gi|169890057|gb|ACB03764.1| trans-translation protein [Escherichia coli str. K-12 substr. DH10B] gi|170124997|gb|EDS93928.1| SsrA-binding protein [Escherichia albertii TW07627] gi|170517314|gb|ACB15492.1| SsrA-binding protein [Escherichia coli SMS-3-5] gi|187429002|gb|ACD08276.1| SsrA-binding protein [Shigella boydii CDC 3083-94] gi|187769589|gb|EDU33433.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188013615|gb|EDU51737.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4113] gi|189003291|gb|EDU72277.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189357274|gb|EDU75693.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189362100|gb|EDU80519.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189367235|gb|EDU85651.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189370864|gb|EDU89280.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC869] gi|189377200|gb|EDU95616.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC508] gi|190902862|gb|EDV62590.1| SsrA-binding protein [Escherichia coli B7A] gi|190908337|gb|EDV67927.1| SsrA-binding protein [Escherichia coli F11] gi|192926393|gb|EDV81028.1| SsrA-binding protein [Escherichia coli E22] gi|194414122|gb|EDX30398.1| SsrA-binding protein [Escherichia coli B171] gi|194418736|gb|EDX34822.1| SsrA-binding protein [Shigella dysenteriae 1012] gi|194421640|gb|EDX37651.1| SsrA-binding protein [Escherichia coli 101-1] gi|208726157|gb|EDZ75758.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208733142|gb|EDZ81829.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208739006|gb|EDZ86688.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209161217|gb|ACI38650.1| SsrA-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209762448|gb|ACI79536.1| small protein B [Escherichia coli] gi|209762450|gb|ACI79537.1| small protein B [Escherichia coli] gi|209762452|gb|ACI79538.1| small protein B [Escherichia coli] gi|209762454|gb|ACI79539.1| small protein B [Escherichia coli] gi|209762456|gb|ACI79540.1| small protein B [Escherichia coli] gi|209913353|dbj|BAG78427.1| small protein B [Escherichia coli SE11] gi|215266041|emb|CAS10456.1| trans-translation protein [Escherichia coli O127:H6 str. E2348/69] gi|217319645|gb|EEC28070.1| SsrA-binding protein [Escherichia coli O157:H7 str. TW14588] gi|218352975|emb|CAU98775.1| trans-translation protein [Escherichia coli 55989] gi|218355403|emb|CAQ88012.1| trans-translation protein [Escherichia fergusonii ATCC 35469] gi|218361967|emb|CAQ99568.1| trans-translation protein [Escherichia coli IAI1] gi|218366308|emb|CAR04059.1| trans-translation protein [Escherichia coli S88] gi|218371117|emb|CAR18945.1| trans-translation protein [Escherichia coli IAI39] gi|218428301|emb|CAR09225.2| trans-translation protein [Escherichia coli ED1a] gi|218433217|emb|CAR14115.1| trans-translation protein [Escherichia coli UMN026] gi|222034321|emb|CAP77062.1| SsrA-binding protein [Escherichia coli LF82] gi|226839319|gb|EEH71340.1| trans-translation protein [Escherichia sp. 1_1_43] gi|226899832|gb|EEH86091.1| trans-translation protein [Escherichia sp. 3_2_53FAA] gi|238863695|gb|ACR65693.1| trans-translation protein [Escherichia coli BW2952] gi|242378214|emb|CAQ32989.1| small protein B [Escherichia coli BL21(DE3)] gi|253323531|gb|ACT28133.1| SsrA-binding protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974490|gb|ACT40161.1| SsrA-binding protein [Escherichia coli B str. REL606] gi|253978657|gb|ACT44327.1| SsrA-binding protein [Escherichia coli BL21(DE3)] gi|254593965|gb|ACT73326.1| trans-translation protein [Escherichia coli O157:H7 str. TW14359] gi|257755357|dbj|BAI26859.1| trans-translation protein SmpB [Escherichia coli O26:H11 str. 11368] gi|257760448|dbj|BAI31945.1| trans-translation protein SmpB [Escherichia coli O103:H2 str. 12009] gi|257765656|dbj|BAI37151.1| trans-translation protein SmpB [Escherichia coli O111:H- str. 11128] gi|260448307|gb|ACX38729.1| SsrA-binding protein [Escherichia coli DH1] gi|281179665|dbj|BAI55995.1| small protein B [Escherichia coli SE15] gi|281602029|gb|ADA75013.1| SsrA-binding protein [Shigella flexneri 2002017] gi|284922565|emb|CBG35652.1| SsrA-binding protein [Escherichia coli 042] gi|290763764|gb|ADD57725.1| SsrA-binding protein [Escherichia coli O55:H7 str. CB9615] gi|291322061|gb|EFE61490.1| SsrA-binding protein [Escherichia coli B088] gi|291426132|gb|EFE99164.1| SsrA-binding protein [Escherichia coli FVEC1412] gi|291432079|gb|EFF05061.1| SsrA-binding protein [Escherichia coli B185] gi|291468780|gb|EFF11271.1| SsrA-binding protein [Escherichia coli B354] gi|294492336|gb|ADE91092.1| SsrA-binding protein [Escherichia coli IHE3034] gi|298277000|gb|EFI18516.1| SsrA-binding protein [Escherichia coli FVEC1302] gi|299879598|gb|EFI87809.1| SsrA-binding protein [Escherichia coli MS 196-1] gi|300297799|gb|EFJ54184.1| SsrA-binding protein [Escherichia coli MS 185-1] gi|300305678|gb|EFJ60198.1| SsrA-binding protein [Escherichia coli MS 200-1] gi|300315840|gb|EFJ65624.1| SsrA-binding protein [Escherichia coli MS 175-1] gi|300356308|gb|EFJ72178.1| SsrA-binding protein [Escherichia coli MS 198-1] gi|300395550|gb|EFJ79088.1| SsrA-binding protein [Escherichia coli MS 69-1] gi|300403046|gb|EFJ86584.1| SsrA-binding protein [Escherichia coli MS 84-1] gi|300407900|gb|EFJ91438.1| SsrA-binding protein [Escherichia coli MS 45-1] gi|300411883|gb|EFJ95193.1| SsrA-binding protein [Escherichia coli MS 115-1] gi|300418285|gb|EFK01596.1| SsrA-binding protein [Escherichia coli MS 182-1] gi|300451514|gb|EFK15134.1| SsrA-binding protein [Escherichia coli MS 116-1] gi|300454282|gb|EFK17775.1| SsrA-binding protein [Escherichia coli MS 21-1] gi|300461474|gb|EFK24967.1| SsrA-binding protein [Escherichia coli MS 187-1] gi|300522340|gb|EFK43409.1| SsrA-binding protein [Escherichia coli MS 119-7] gi|300527481|gb|EFK48543.1| SsrA-binding protein [Escherichia coli MS 107-1] gi|300838989|gb|EFK66749.1| SsrA-binding protein [Escherichia coli MS 124-1] gi|300846601|gb|EFK74361.1| SsrA-binding protein [Escherichia coli MS 78-1] gi|301077582|gb|EFK92388.1| SsrA-binding protein [Escherichia coli MS 146-1] gi|305854501|gb|EFM54939.1| SsrA-binding protein [Escherichia coli NC101] gi|306905498|gb|EFN36032.1| SsrA-binding protein [Escherichia coli W] gi|307625831|gb|ADN70135.1| SsrA-binding protein [Escherichia coli UM146] gi|308122036|gb|EFO59298.1| SsrA-binding protein [Escherichia coli MS 145-7] gi|308927533|gb|EFP73005.1| ssrA-binding protein [Shigella dysenteriae 1617] gi|309702999|emb|CBJ02330.1| SsrA-binding protein [Escherichia coli ETEC H10407] gi|310333079|gb|EFQ00293.1| ssrA-binding protein [Escherichia coli 1827-70] gi|312289799|gb|EFR17688.1| ssrA-binding protein [Escherichia coli 2362-75] gi|312947191|gb|ADR28018.1| SsrA-binding protein [Escherichia coli O83:H1 str. NRG 857C] gi|313648298|gb|EFS12742.1| ssrA-binding protein [Shigella flexneri 2a str. 2457T] gi|315061933|gb|ADT76260.1| trans-translation protein [Escherichia coli W] gi|315137237|dbj|BAJ44396.1| SsrA-binding protein [Escherichia coli DH1] gi|315252784|gb|EFU32752.1| SsrA-binding protein [Escherichia coli MS 85-1] gi|315284839|gb|EFU44284.1| SsrA-binding protein [Escherichia coli MS 110-3] gi|315290978|gb|EFU50343.1| SsrA-binding protein [Escherichia coli MS 153-1] gi|315298661|gb|EFU57915.1| SsrA-binding protein [Escherichia coli MS 16-3] gi|315615319|gb|EFU95954.1| ssrA-binding protein [Escherichia coli 3431] gi|320177036|gb|EFW52057.1| tmRNA-binding protein SmpB [Shigella dysenteriae CDC 74-1112] gi|320183101|gb|EFW57963.1| tmRNA-binding protein SmpB [Shigella flexneri CDC 796-83] gi|320188953|gb|EFW63612.1| tmRNA-binding protein SmpB [Escherichia coli O157:H7 str. EC1212] gi|320194782|gb|EFW69411.1| tmRNA-binding protein SmpB [Escherichia coli WV_060327] gi|320198392|gb|EFW72994.1| tmRNA-binding protein SmpB [Escherichia coli EC4100B] gi|320640802|gb|EFX10300.1| SsrA-binding protein [Escherichia coli O157:H7 str. G5101] gi|320646147|gb|EFX15092.1| SsrA-binding protein [Escherichia coli O157:H- str. 493-89] gi|320651444|gb|EFX19845.1| SsrA-binding protein [Escherichia coli O157:H- str. H 2687] gi|320657048|gb|EFX24871.1| SsrA-binding protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662712|gb|EFX30056.1| SsrA-binding protein [Escherichia coli O55:H7 str. USDA 5905] gi|320667529|gb|EFX34453.1| SsrA-binding protein [Escherichia coli O157:H7 str. LSU-61] gi|323156274|gb|EFZ42433.1| ssrA-binding protein [Escherichia coli EPECa14] gi|323167744|gb|EFZ53439.1| ssrA-binding protein [Shigella sonnei 53G] gi|323173063|gb|EFZ58694.1| ssrA-binding protein [Escherichia coli LT-68] gi|323177254|gb|EFZ62842.1| ssrA-binding protein [Escherichia coli 1180] gi|323184504|gb|EFZ69878.1| ssrA-binding protein [Escherichia coli 1357] gi|323188389|gb|EFZ73678.1| ssrA-binding protein [Escherichia coli RN587/1] gi|323377487|gb|ADX49755.1| SsrA-binding protein [Escherichia coli KO11] gi|323935666|gb|EGB31983.1| SsrA-binding protein [Escherichia coli E1520] gi|323946253|gb|EGB42286.1| SsrA-binding protein [Escherichia coli H120] gi|323951182|gb|EGB47058.1| SsrA-binding protein [Escherichia coli H252] gi|323957013|gb|EGB52739.1| SsrA-binding protein [Escherichia coli H263] gi|323960522|gb|EGB56151.1| SsrA-binding protein [Escherichia coli H489] gi|323971437|gb|EGB66673.1| SsrA-binding protein [Escherichia coli TA007] gi|323978471|gb|EGB73554.1| SsrA-binding protein [Escherichia coli TW10509] gi|324005805|gb|EGB75024.1| SsrA-binding protein [Escherichia coli MS 57-2] gi|324012420|gb|EGB81639.1| SsrA-binding protein [Escherichia coli MS 60-1] gi|324016606|gb|EGB85825.1| SsrA-binding protein [Escherichia coli MS 117-3] gi|324111255|gb|EGC05237.1| SsrA-binding protein [Escherichia fergusonii B253] gi|324120077|gb|EGC13953.1| SsrA-binding protein [Escherichia coli E1167] gi|325496313|gb|EGC94172.1| SsrA-binding protein [Escherichia fergusonii ECD227] gi|326344370|gb|EGD68128.1| tmRNA-binding protein SmpB [Escherichia coli O157:H7 str. 1125] gi|326347739|gb|EGD71456.1| tmRNA-binding protein SmpB [Escherichia coli O157:H7 str. 1044] gi|330912381|gb|EGH40891.1| tmRNA-binding protein SmpB [Escherichia coli AA86] gi|331036807|gb|EGI09031.1| SsrA-binding protein [Escherichia coli H736] gi|331042109|gb|EGI14251.1| SsrA-binding protein [Escherichia coli M605] gi|331047458|gb|EGI19535.1| SsrA-binding protein [Escherichia coli M718] gi|331053349|gb|EGI25378.1| SsrA-binding protein [Escherichia coli TA206] gi|331058642|gb|EGI30620.1| SsrA-binding protein [Escherichia coli TA143] gi|331063038|gb|EGI34951.1| SsrA-binding protein [Escherichia coli TA271] gi|331068796|gb|EGI40189.1| SsrA-binding protein [Escherichia coli TA280] gi|331073440|gb|EGI44761.1| SsrA-binding protein [Escherichia coli H591] gi|331077890|gb|EGI49096.1| SsrA-binding protein [Escherichia coli H299] gi|332089207|gb|EGI94314.1| ssrA-binding protein [Shigella dysenteriae 155-74] gi|332103037|gb|EGJ06383.1| trans-translation protein [Shigella sp. D9] Length = 160 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|75676118|ref|YP_318539.1| SsrA-binding protein [Nitrobacter winogradskyi Nb-255] gi|123613241|sp|Q3SRA4|SSRP_NITWN RecName: Full=SsrA-binding protein gi|74420988|gb|ABA05187.1| SsrA-binding protein [Nitrobacter winogradskyi Nb-255] Length = 157 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 94/156 (60%), Positives = 122/156 (78%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +G KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E Sbjct: 1 MADKGERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSIRNGKTTIAESYADSKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL NS IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINSNIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVDREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR Sbjct: 121 AKLLLAIAKGKKLHDKRESEKKRDWGREKGRLLRAR 156 >gi|311278422|ref|YP_003940653.1| SsrA-binding protein [Enterobacter cloacae SCF1] gi|308747617|gb|ADO47369.1| SsrA-binding protein [Enterobacter cloacae SCF1] Length = 160 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGANFTPLAVASSHYVCDPTRTRKLLLNQRELDTLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKN 157 >gi|119490551|ref|ZP_01622993.1| SsrA-binding protein [Lyngbya sp. PCC 8106] gi|119453879|gb|EAW35035.1| SsrA-binding protein [Lyngbya sp. PCC 8106] Length = 155 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 107/156 (68%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +K+++DNRKARY Y ++ +++AGI L GTEVKS+R +VN+ D YA N E Sbjct: 1 MSKNDSGGRKIITDNRKARYLYELLETYQAGIELQGTEVKSIRAGRVNMQDGYALVRNRE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N +I Y + FNH PRR RKLLL ++EI++L V + G+TLVP K+YF GL Sbjct: 61 AWLINVHISPYETSAYFNHEPRRTRKLLLHRKEINKLIGLVEQKGLTLVPTKMYFK-NGL 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++A+ +GKK +DKR+T KKRD RQ R ++++ Sbjct: 120 VKVEIAVGRGKKLHDKRDTMKKRDDQRQMERAMKQY 155 >gi|86739514|ref|YP_479914.1| SsrA-binding protein [Frankia sp. CcI3] gi|123737756|sp|Q2JEV7|SSRP_FRASC RecName: Full=SsrA-binding protein gi|86566376|gb|ABD10185.1| SsrA-binding protein [Frankia sp. CcI3] Length = 159 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 100/150 (66%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +++++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL N Sbjct: 5 TGRRLIAQNKRARHDYDILDTYEAGLVLRGTEVKALRAGRASLVDGFAQISDGEIWLHNV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY + NH PRR RK+LL + EI +L + G+TLVP+ +Y+ G AKI++A Sbjct: 65 HIPEYTEGTWTNHAPRRKRKMLLHRAEIEKLVGKTQEGGLTLVPLSLYWKD-GRAKIEIA 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+G+K+YDKR +RD R+ R + Sbjct: 124 LARGRKSYDKRHAIAERDAAREIGRAMGRR 153 >gi|217977032|ref|YP_002361179.1| SsrA-binding protein [Methylocella silvestris BL2] gi|254778370|sp|B8ESC7|SSRP_METSB RecName: Full=SsrA-binding protein gi|217502408|gb|ACK49817.1| SsrA-binding protein [Methylocella silvestris BL2] Length = 158 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 91/157 (57%), Positives = 120/157 (76%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND- 61 + + KV ++NR+ARYNY I +FEAG++LTGTEVK+LR K I++SYA+ E Sbjct: 1 MAPKKESLYKVAAENRRARYNYEIGETFEAGLMLTGTEVKALRTGKATIAESYASVERSG 60 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E++L N+ IPEYLQANRFNH P+R RKLLL EI +L R+GMT+VP+KIYFN +G Sbjct: 61 ELFLINATIPEYLQANRFNHEPKRPRKLLLHASEIVKLAQGTEREGMTIVPLKIYFNDRG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AKI++ALA+GK+ +DKRETEKKRDWDR+K R++RE Sbjct: 121 RAKIEIALARGKQLHDKRETEKKRDWDREKGRLMREK 157 >gi|114570132|ref|YP_756812.1| SsrA-binding protein [Maricaulis maris MCS10] gi|122315949|sp|Q0APB3|SSRP_MARMM RecName: Full=SsrA-binding protein gi|114340594|gb|ABI65874.1| SsrA-binding protein [Maricaulis maris MCS10] Length = 156 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 110/158 (69%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS P V+ NR+AR++Y I +FEAG++L G+EVKSLR + NI++SY + E Sbjct: 1 MSKPKSETAP---VAVNRRARFDYEIEETFEAGLMLMGSEVKSLREGRANIAESYVSAER 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 + +WL N+ IP Y ANRFNH P+R+RKLLL +EI RL A + G T+V +++YFN + Sbjct: 58 EGLWLINADIPPYGPANRFNHEPKRHRKLLLKAKEIARLTGASTQQGRTIVALRLYFNGR 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GLAK+ + LA GKK DKR+T K R+W++QK R+++ + Sbjct: 118 GLAKLQIGLATGKKTVDKRQTIKDREWNKQKSRLMKNY 155 >gi|86137154|ref|ZP_01055732.1| SsrA-binding protein [Roseobacter sp. MED193] gi|85826478|gb|EAQ46675.1| SsrA-binding protein [Roseobacter sp. MED193] Length = 158 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 77/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +++ +P KV+++NR+AR++Y I E GI+L G+EVK+LR NI++SYA E+ Sbjct: 1 MA-QTKSDPNYKVIAENRRARFDYAIEDDVECGIMLEGSEVKALREGGTNIAESYAAVED 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSY+P Y QA F H RR RKLL+S++++ ++ A +R GMTLVP+ +YFN K Sbjct: 60 GELWLVNSYVPPYSQAKMFKHEERRRRKLLVSRKQLSDMWNATQRKGMTLVPIVMYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GKK +DKRE KRDW RQK R++++H Sbjct: 120 GRAKLKIGIAKGKKAHDKREAAAKRDWSRQKSRLMKDH 157 >gi|283786239|ref|YP_003366104.1| SsrA small binding protein B [Citrobacter rodentium ICC168] gi|282949693|emb|CBG89312.1| SsrA small binding protein B [Citrobacter rodentium ICC168] Length = 160 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157 >gi|323159140|gb|EFZ45133.1| ssrA-binding protein [Escherichia coli E128010] Length = 160 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY N Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRN 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|227888186|ref|ZP_04005991.1| SsrA-binding protein [Escherichia coli 83972] gi|227834826|gb|EEJ45292.1| SsrA-binding protein [Escherichia coli 83972] gi|307554632|gb|ADN47407.1| SsrA-binding protein [Escherichia coli ABU 83972] Length = 160 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKERIMKN 157 >gi|78485753|ref|YP_391678.1| SsrA-binding protein [Thiomicrospira crunogena XCL-2] gi|123555339|sp|Q31FR9|SSRP_THICR RecName: Full=SsrA-binding protein gi|78364039|gb|ABB42004.1| SsrA-binding protein [Thiomicrospira crunogena XCL-2] Length = 158 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 104/159 (65%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + N P ++ N+KAR++Y I +FEAG+ L G EVKSLR KV I++SY +N Sbjct: 1 MAKKKKQNNP-NSIAQNKKARFDYFIEETFEAGLALEGWEVKSLRQGKVQINESYILLKN 59 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E WL + P + NH P R RKLL+ +REI RL V + G T+VP+ ++++ Sbjct: 60 NEAWLFGALITPLITASTHSNHDPLRLRKLLMHRREIDRLMGLVDQKGFTVVPLGLHWS- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG KI + LA+GKK +DKR T+K+RDW+R K RI++ H Sbjct: 119 KGKVKISIGLAKGKKLHDKRATQKERDWNRDKQRIMKYH 157 >gi|302383622|ref|YP_003819445.1| SsrA-binding protein [Brevundimonas subvibrioides ATCC 15264] gi|302194250|gb|ADL01822.1| SsrA-binding protein [Brevundimonas subvibrioides ATCC 15264] Length = 168 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 79/147 (53%), Positives = 112/147 (76%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV+++NR+AR++Y + + EAGI+L GTE+K+LR+ + NI++SYA E EI L N+ IP Sbjct: 21 KVIAENRRARFDYFLEDNIEAGIMLLGTEIKALRMGRANIAESYAAVEGREIVLINADIP 80 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y+QANRFNH PRR RKLLL +++I RL AV++DG T++P+K+Y N G AK+++ALA+ Sbjct: 81 PYVQANRFNHEPRRPRKLLLHRKQIDRLIGAVQKDGQTIIPLKLYLNDDGKAKLEIALAK 140 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRE RDW R K R+LR+ Sbjct: 141 GKKLHDKREASADRDWARDKARLLRDR 167 >gi|254389758|ref|ZP_05004982.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294812906|ref|ZP_06771549.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|326441318|ref|ZP_08216052.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|197703469|gb|EDY49281.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064] gi|294325505|gb|EFG07148.1| SsrA-binding protein [Streptomyces clavuligerus ATCC 27064] Length = 172 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 + +K+V+ N+KAR++YHI+ ++E G+VLTGTEVKSLR + ++ D + + Sbjct: 8 AKSKAKEQGRKLVAQNKKARHDYHIIDTYECGMVLTGTEVKSLRQGRASLVDGFIQIDGH 67 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL N +IPEY Q NH RR RKLLL + EI +L A ++ G T+VP+ +YF G Sbjct: 68 EAWLHNVHIPEYSQGTWTNHAARRKRKLLLHRAEIDKLEAKLQDAGHTIVPLSLYFT-NG 126 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 AK+++ALA+GKK YDKR+T ++R R+ R + Sbjct: 127 RAKVEIALAKGKKEYDKRQTLRERQDRREADRAM 160 >gi|154247755|ref|YP_001418713.1| SsrA-binding protein [Xanthobacter autotrophicus Py2] gi|238686735|sp|A7IM13|SSRP_XANP2 RecName: Full=SsrA-binding protein gi|154161840|gb|ABS69056.1| SsrA-binding protein [Xanthobacter autotrophicus Py2] Length = 158 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 91/158 (57%), Positives = 121/158 (76%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + P+K+ +DNR+AR+++ I +FEAG++LTGTEVKSLR K I +SYA + Sbjct: 1 MSSK-KTEAPRKIAADNRRARFDFEIGETFEAGVMLTGTEVKSLRTGKATIGESYAAQKA 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N+YIPEYL+ANRFNH RR RKLLL KR+I +L AV R+GMT+V +KIYFN + Sbjct: 60 GEMWLYNAYIPEYLEANRFNHETRRPRKLLLHKRQIAKLGHAVEREGMTVVALKIYFNDQ 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++LALA+GKK +DKRE K+RDW R K R++R+ Sbjct: 120 GRAKVELALAKGKKAHDKREASKERDWARDKARLMRDR 157 >gi|92117783|ref|YP_577512.1| SsrA-binding protein [Nitrobacter hamburgensis X14] gi|122417657|sp|Q1QL45|SSRP_NITHX RecName: Full=SsrA-binding protein gi|91800677|gb|ABE63052.1| SsrA-binding protein [Nitrobacter hamburgensis X14] Length = 157 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 92/156 (58%), Positives = 121/156 (77%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E Sbjct: 1 MAEKNERAIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSVRNGKTTIAESYADSKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLLGAVDREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRAR 156 >gi|156932838|ref|YP_001436754.1| hypothetical protein ESA_00635 [Cronobacter sakazakii ATCC BAA-894] gi|166223217|sp|A7MHX6|SSRP_ENTS8 RecName: Full=SsrA-binding protein gi|156531092|gb|ABU75918.1| hypothetical protein ESA_00635 [Cronobacter sakazakii ATCC BAA-894] Length = 160 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P R RKLLL++RE+ LY + RDG T+V + +Y+ Sbjct: 61 GEAYLFGANFQPLNVASTHVVCDPTRTRKLLLNQRELDNLYGRINRDGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157 >gi|148256041|ref|YP_001240626.1| SsrA-binding protein [Bradyrhizobium sp. BTAi1] gi|166222363|sp|A5EKM6|SSRP_BRASB RecName: Full=SsrA-binding protein gi|146408214|gb|ABQ36720.1| SsrA-binding protein [Bradyrhizobium sp. BTAi1] Length = 157 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 90/156 (57%), Positives = 119/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P V ++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA + E Sbjct: 1 MADKKEPKITVAAENRKARFNYAIEDTIEAGIALTGTEVKSIRSGKSTIAESYADSRDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVEREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRAR 156 >gi|146341386|ref|YP_001206434.1| SsrA-binding protein [Bradyrhizobium sp. ORS278] gi|166222364|sp|A4YWD7|SSRP_BRASO RecName: Full=SsrA-binding protein gi|146194192|emb|CAL78213.1| trans-translation protein, binds tmRNA and tRNA (SsrA-binding protein) [Bradyrhizobium sp. ORS278] Length = 157 Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats. Identities = 90/156 (57%), Positives = 120/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ P V ++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA + E Sbjct: 1 MANKNEPKITVAAENRKARFNYAIEDTIEAGIALTGTEVKSVRGGKSTIAESYADSRDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R+GMTL+P+K+YFN +G Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVEREGMTLIPLKLYFNERGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LA+A+GKK +DKRE+EKKRDW R+K R+LR Sbjct: 121 AKLLLAVAKGKKLHDKRESEKKRDWGREKGRLLRAR 156 >gi|169630554|ref|YP_001704203.1| SsrA-binding protein [Mycobacterium abscessus ATCC 19977] gi|238688782|sp|B1MEU3|SSRP_MYCA9 RecName: Full=SsrA-binding protein gi|169242521|emb|CAM63549.1| SsrA-binding protein [Mycobacterium abscessus] Length = 159 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +KV++ NRKAR+NY I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E Sbjct: 1 MSKKPADGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL +IP+Y NH P RNRKLLL + +I L R +TLVP+ +YF G Sbjct: 61 VWLRGVHIPQYDHGTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLD-GK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK+ +DKR+ KRD R+ R L Sbjct: 120 VKVELALARGKQAHDKRQDIAKRDASREITRELGRR 155 >gi|296268780|ref|YP_003651412.1| SsrA-binding protein [Thermobispora bispora DSM 43833] gi|296091567|gb|ADG87519.1| SsrA-binding protein [Thermobispora bispora DSM 43833] Length = 160 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 104/149 (69%), Gaps = 1/149 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K+++ NR+A+++Y I ++EAGIVLTGTEVKSLR + N+++ YAT ++ E+WL N Sbjct: 5 TGRKLIAQNRRAKHDYFIEDTYEAGIVLTGTEVKSLRAGRANLTEGYATVKDGEVWLINV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH PRR RKLLL ++EI +L A ++ G+TLVP+ +YF G AK+++ Sbjct: 65 HIPEYSHGTWTNHAPRRTRKLLLHRKEIAKLEAVLKERGLTLVPLSLYFKD-GKAKVEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+GKK+YDKR+ ++ R+ R + Sbjct: 124 VARGKKSYDKRQALLEKQAKREMARAMSN 152 >gi|332162713|ref|YP_004299290.1| SsrA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666943|gb|ADZ43587.1| SsrA-binding protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330859465|emb|CBX69809.1| ssrA-binding protein [Yersinia enterocolitica W22703] Length = 164 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWKLDKARIMKHAN 163 >gi|123441340|ref|YP_001005327.1| SsrA-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166223474|sp|A1JKI0|SSRP_YERE8 RecName: Full=SsrA-binding protein gi|122088301|emb|CAL11092.1| SsrA-binding protein (small protein B) [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606822|emb|CBY28320.1| tmrna-binding protein SmpB [Yersinia enterocolitica subsp. palearctica Y11] Length = 160 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 61 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 120 NAWVKVKIGVAKGKKDHDKRDDIKDREWKLDKARIMKHAN 159 >gi|15616114|ref|NP_244419.1| SsrA-binding protein [Bacillus halodurans C-125] gi|10176176|dbj|BAB07271.1| small protein B [Bacillus halodurans C-125] Length = 157 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 103/157 (65%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + G KV++ N+KAR++Y I +FEAG+VL GTE+KS+R + N+ DS+A N E Sbjct: 1 MNVMGETEGKVIAQNKKARHDYFIEETFEAGMVLQGTEIKSIRAGRANLKDSFARVSNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N +I EY Q NR+NH P R RKLLL K++I L ++ G T+VP+KIY G Sbjct: 61 VYLHNCHISEYEQGNRYNHEPTRARKLLLHKKQIDTLIGQTQQKGYTIVPLKIYIK-NGF 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK + L +GKK +DKRET ++RD R+ R L+E N Sbjct: 120 AKCLIGLGKGKKTFDKRETLRRRDAKREVERALKEKN 156 >gi|242240626|ref|YP_002988807.1| SsrA-binding protein [Dickeya dadantii Ech703] gi|242132683|gb|ACS86985.1| SsrA-binding protein [Dickeya dadantii Ech703] Length = 160 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAYKPGSATIALNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVMLRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P ++ ++ P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATFTPLHVASSHVICDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR+ K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKEHDKRDDIKEREWKLDKARIMKN 157 >gi|148543631|ref|YP_001271001.1| SsrA-binding protein [Lactobacillus reuteri DSM 20016] gi|184153045|ref|YP_001841386.1| SsrA-binding protein [Lactobacillus reuteri JCM 1112] gi|194468189|ref|ZP_03074175.1| SsrA-binding protein [Lactobacillus reuteri 100-23] gi|227363398|ref|ZP_03847524.1| SsrA-binding protein [Lactobacillus reuteri MM2-3] gi|227545084|ref|ZP_03975133.1| SsrA-binding protein [Lactobacillus reuteri CF48-3A] gi|300909246|ref|ZP_07126707.1| SsrA-binding protein [Lactobacillus reuteri SD2112] gi|325681994|ref|ZP_08161512.1| SsrA-binding protein [Lactobacillus reuteri MM4-1A] gi|187611483|sp|A5VIJ0|SSRP_LACRD RecName: Full=SsrA-binding protein gi|229559867|sp|B2G624|SSRP_LACRJ RecName: Full=SsrA-binding protein gi|148530665|gb|ABQ82664.1| SsrA-binding protein [Lactobacillus reuteri DSM 20016] gi|183224389|dbj|BAG24906.1| SsrA-binding protein [Lactobacillus reuteri JCM 1112] gi|194453042|gb|EDX41940.1| SsrA-binding protein [Lactobacillus reuteri 100-23] gi|227071587|gb|EEI09884.1| SsrA-binding protein [Lactobacillus reuteri MM2-3] gi|227184933|gb|EEI65004.1| SsrA-binding protein [Lactobacillus reuteri CF48-3A] gi|300893111|gb|EFK86470.1| SsrA-binding protein [Lactobacillus reuteri SD2112] gi|324978638|gb|EGC15587.1| SsrA-binding protein [Lactobacillus reuteri MM4-1A] Length = 157 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS +++ N+KAR++Y + + EAG+VLTGTE+KS+R +VN+ D +A N Sbjct: 1 MAKKSHQENNDNLIAQNKKARHDYFVTDTVEAGLVLTGTEIKSVRAHRVNLKDGFAQVRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N +I EY FN P RNRKLLL K+EI++L A++ G+TL+P+K+Y Sbjct: 61 GEAWLMNVHISEYDNGTYFNQDPLRNRKLLLHKKEINKLVGALQDKGVTLIPLKMYIK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L LA+GK YDKRE K+R+ +R+ R+++ + Sbjct: 120 GYAKVLLGLAKGKHQYDKREAIKRREQNREIERVMKHY 157 >gi|261342050|ref|ZP_05969908.1| SsrA-binding protein [Enterobacter cancerogenus ATCC 35316] gi|288315706|gb|EFC54644.1| SsrA-binding protein [Enterobacter cancerogenus ATCC 35316] Length = 160 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ + P R RKLLL+KRE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAFLFGANFTPLTVASSHYVCDPTRTRKLLLNKRELESLYGRINREGFTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRTDLKEREWQLDKARIMKN 157 >gi|268593272|ref|ZP_06127493.1| SsrA-binding protein [Providencia rettgeri DSM 1131] gi|291311168|gb|EFE51621.1| SsrA-binding protein [Providencia rettgeri DSM 1131] Length = 160 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY + Sbjct: 1 MTKKKPYKPGSATIAMNKRARHEYSIEEEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ P R+RKLLL++RE+ LY V R+G T++ + +Y+ Sbjct: 61 GEAYLFGANFTPLTVASSHVVCDPTRSRKLLLNQRELDTLYGKVNREGYTVIALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR K+R+W K RI++ N Sbjct: 120 NAWCKVKIGVARGKKSHDKRSDIKEREWQLDKARIMKHSN 159 >gi|257063631|ref|YP_003143303.1| SsrA-binding protein [Slackia heliotrinireducens DSM 20476] gi|256791284|gb|ACV21954.1| SsrA-binding protein [Slackia heliotrinireducens DSM 20476] Length = 155 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 98/149 (65%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK ++ NR+A ++Y IV +FEAGIVLTGTEV+SLR + ++D YA + E+WL +I Sbjct: 5 KKQIAKNRRALHDYEIVETFEAGIVLTGTEVRSLRENNCQLTDCYALVRHGEVWLHGLHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + FN P R RKLLL +R+I L + + G+ LVP+ IYF+ GL K++LA+A Sbjct: 65 APYSNGSYFNVDPDRKRKLLLHRRQIRYLDSKAKEKGLALVPLNIYFSPNGLVKVELAVA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKR + +RD R+ R L+ N Sbjct: 125 RGKKLHDKRASMAERDTKREIERALKSRN 153 >gi|312870273|ref|ZP_07730401.1| SsrA-binding protein [Lactobacillus oris PB013-T2-3] gi|311094157|gb|EFQ52473.1| SsrA-binding protein [Lactobacillus oris PB013-T2-3] Length = 157 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 108/158 (68%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS+ +++ N+KAR++Y + ++EAG+VLTGTE+KS+R +VN+ D +A +N Sbjct: 1 MAKKSQQKNNDNLIAQNKKARHDYFVTDTYEAGLVLTGTEIKSVRAHRVNLKDGFAQIKN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N +I EY N FN P RNRKLLL K+E+HRL ++ G+TL+P+K+Y Sbjct: 61 GEAWLMNVHISEYDNGNIFNQDPLRNRKLLLHKKELHRLTGVLQDKGVTLIPLKMYIK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L +A+GK YDKRE K+R+ +R+ R+++ + Sbjct: 120 GYAKVLLGVAKGKHQYDKREAIKRREQNREIERVMKHY 157 >gi|256823232|ref|YP_003147195.1| SsrA-binding protein [Kangiella koreensis DSM 16069] gi|256796771|gb|ACV27427.1| SsrA-binding protein [Kangiella koreensis DSM 16069] Length = 157 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 99/159 (62%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +G P ++ N++AR++Y I ++EAG+VL G EVKS+R KVN+++SY ++ Sbjct: 1 MAKK-KGKPSGNTIALNKRARHDYFIEDTYEAGLVLQGWEVKSIRAGKVNLAESYVLLKD 59 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L +I + P R RKLLL RE+ +L+ V + G T+V + +Y+ Sbjct: 60 GEAFLFGCHITPLISASTHVVADPTRTRKLLLHDRELAQLFRGVEQQGYTVVALAMYWKQ 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ A+GKK +DKR TEK+R+W++ K RI++ H Sbjct: 120 H-RVKLEIGCAKGKKLHDKRATEKEREWNKSKERIMKRH 157 >gi|238750406|ref|ZP_04611907.1| hypothetical protein yrohd0001_21170 [Yersinia rohdei ATCC 43380] gi|238711337|gb|EEQ03554.1| hypothetical protein yrohd0001_21170 [Yersinia rohdei ATCC 43380] Length = 164 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQVDKARIMKHAN 163 >gi|169830467|ref|YP_001716449.1| SsrA-binding protein [Candidatus Desulforudis audaxviator MP104C] gi|254778356|sp|B1I1B6|SSRP_DESAP RecName: Full=SsrA-binding protein gi|169637311|gb|ACA58817.1| SsrA-binding protein [Candidatus Desulforudis audaxviator MP104C] Length = 153 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 76/147 (51%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P+K V NRKAR+ Y I+ ++EAG+VL GTEVKSLR K N+ DS+A +N E+WL N + Sbjct: 5 PEKTVCQNRKARHEYFILETYEAGLVLKGTEVKSLRAGKANLKDSFARIQNGELWLENMH 64 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + Y Q NRFNH P+R RKLL+ K EI RL+ R G+ L+P+++YF G AK++LAL Sbjct: 65 VSPYEQGNRFNHEPKRPRKLLMHKSEIMRLWGKTREKGLALIPLRVYFKD-GRAKVELAL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156 A+GKK YDKR+ KR+ +R+ R R Sbjct: 124 AKGKKLYDKRDDIAKREAEREIARAAR 150 >gi|85703801|ref|ZP_01034904.1| SsrA-binding protein [Roseovarius sp. 217] gi|85671121|gb|EAQ25979.1| SsrA-binding protein [Roseovarius sp. 217] Length = 158 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 87/158 (55%), Positives = 120/158 (75%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + NP KV+++NR+ARY++ I E GI+L G+EVKSLRV+ NI++SYA EN Sbjct: 1 MA-KDKENPNYKVIAENRRARYDFAIEDDLECGIILEGSEVKSLRVNSANIAESYAMVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H +R RKLL+SK+E+ RL++ +R GMTLVP+ +YFN + Sbjct: 60 GELWLVNSYIAPYEQAKTFGHDEKRRRKLLVSKKEMSRLWSDTQRKGMTLVPLVLYFNHR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AK+ + +A+GKKN+DKRETE KRDW RQK R+L++H Sbjct: 120 GIAKLKIGIAKGKKNHDKRETEAKRDWARQKQRLLKDH 157 >gi|212710686|ref|ZP_03318814.1| hypothetical protein PROVALCAL_01752 [Providencia alcalifaciens DSM 30120] gi|212686767|gb|EEB46295.1| hypothetical protein PROVALCAL_01752 [Providencia alcalifaciens DSM 30120] Length = 160 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY + Sbjct: 1 MTKKKPYKPGSATIAMNKRARHEYSIEEEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ P R+RKLLL++RE+ LY V R+G T++ + +Y+ Sbjct: 61 GEAYLFGANFTPLTVASSHVVCDPTRSRKLLLNQRELDTLYGRVNREGYTVIALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK +DKR K R+W K RI++ N Sbjct: 120 NAWCKVKIGVARGKKAHDKRSDIKDREWQLDKARIMKHSN 159 >gi|317498437|ref|ZP_07956732.1| SsrA-binding protein [Lachnospiraceae bacterium 5_1_63FAA] gi|291560954|emb|CBL39754.1| SsrA-binding protein [butyrate-producing bacterium SSC/2] gi|316894331|gb|EFV16518.1| SsrA-binding protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 158 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + K++++N+KAR++Y + SFEAGIVL GTEVKSLR +I +S+ +N E Sbjct: 1 MSKAKTDGIKLIANNKKARHDYFVEDSFEAGIVLHGTEVKSLRQGHCSIKESFVDIDNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +++ +I Y + N FN P R RKLLL K EI ++ + + G TL+P+K+YF+ L Sbjct: 61 VFIHQMHISPYEKGNIFNKDPLRTRKLLLHKSEISKMIGQINQKGYTLIPLKVYFSGS-L 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + L +GKK YDKR+ KRD R+ R + N Sbjct: 120 VKVQIGLCKGKKLYDKRQDISKRDQLREAQRDFKVRN 156 >gi|197285761|ref|YP_002151633.1| SsrA-binding protein [Proteus mirabilis HI4320] gi|227356275|ref|ZP_03840663.1| SsrA-binding protein (small protein B) [Proteus mirabilis ATCC 29906] gi|238693203|sp|B4F065|SSRP_PROMH RecName: Full=SsrA-binding protein gi|194683248|emb|CAR43952.1| SsrA-binding protein (small protein B) [Proteus mirabilis HI4320] gi|227163385|gb|EEI48306.1| SsrA-binding protein (small protein B) [Proteus mirabilis ATCC 29906] Length = 160 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKSHKPGSATIALNKRARHEYFIEDEIEAGLSLQGWEVKSLRAGKANISDSYVIMRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL +RE+ LY + RDG T+V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASTHVVCDPTRTRKLLLKQRELANLYGQINRDGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + +A+GKK++DKR+T K R+W K RI++ N Sbjct: 120 NAWCKIKIGVAKGKKDHDKRDTIKDREWKLDKARIMKNAN 159 >gi|260598998|ref|YP_003211569.1| SsrA-binding protein [Cronobacter turicensis z3032] gi|260218175|emb|CBA33022.1| SsrA-binding protein [Cronobacter turicensis z3032] Length = 160 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAYLFGANFQPLNVASTHVVCDPTRTRKLLLNQRELDSLYGRMNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 157 >gi|56698617|ref|YP_168994.1| SsrA-binding protein [Ruegeria pomeroyi DSS-3] gi|67461890|sp|Q5LLW5|SSRP_SILPO RecName: Full=SsrA-binding protein gi|56680354|gb|AAV97020.1| SsrA-binding protein [Ruegeria pomeroyi DSS-3] Length = 158 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P KV+++NR+AR++Y I E GI+L G+EVK+LR NI+DSYA EN Sbjct: 1 MAKKI-SDPNYKVIAENRRARFDYAIESDLECGIMLEGSEVKALRGGGSNIADSYAAVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N+YIP Y QA F H RR RKLL+S++E+ L+ A +R GMTLVP+ +YFN K Sbjct: 60 GELWLVNAYIPPYEQAKMFKHEERRRRKLLVSRKELANLWNATQRKGMTLVPLVLYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AK+ L +A+GKK +DKRETE KRDW+RQK R+L+++ Sbjct: 120 GIAKMKLGIAKGKKIHDKRETEAKRDWNRQKQRLLKDN 157 >gi|271499337|ref|YP_003332362.1| SsrA-binding protein [Dickeya dadantii Ech586] gi|270342892|gb|ACZ75657.1| SsrA-binding protein [Dickeya dadantii Ech586] Length = 160 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 93/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEIEAGLALQGWEVKSLRAGKANISDSYVLMRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P + ++ P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATFTPLHGASSHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +K+ + +A+GKK +DKR+ K+R+W K RI++ Sbjct: 120 NAWSKVKIGVAKGKKEHDKRDDIKEREWKLDKARIMKN 157 >gi|238796717|ref|ZP_04640223.1| hypothetical protein ymoll0001_29340 [Yersinia mollaretii ATCC 43969] gi|238719448|gb|EEQ11258.1| hypothetical protein ymoll0001_29340 [Yersinia mollaretii ATCC 43969] Length = 164 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQVDKARIMKHAN 163 >gi|170748309|ref|YP_001754569.1| SsrA-binding protein [Methylobacterium radiotolerans JCM 2831] gi|238688763|sp|B1LTE0|SSRP_METRJ RecName: Full=SsrA-binding protein gi|170654831|gb|ACB23886.1| SsrA-binding protein [Methylobacterium radiotolerans JCM 2831] Length = 157 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 80/156 (51%), Positives = 113/156 (72%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P +++V+DNR ARY+Y I + EAGI LTGTEVKSLR K I ++YA + Sbjct: 1 MAPKPEPSRRIVADNRAARYHYTIEDTLEAGIALTGTEVKSLRGGKATIGEAYAGPSGTD 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 + L N+YIPEYL+ANRFNH +R R+LLL +R+I++L A +R G T+VP+KIYFN KG Sbjct: 61 LMLFNAYIPEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVVPLKIYFNDKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++L L +GK+ +DKRE K+RDW R + R++R+ Sbjct: 121 AKVELGLGKGKQAHDKREAVKERDWQRDRARLMRDR 156 >gi|187611500|sp|A4WDI4|SSRP_ENT38 RecName: Full=SsrA-binding protein Length = 160 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKVHKPGSATIALNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVILID 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ + P R RKLLL++RE+ L+ + R+G T+V + +Y+ Sbjct: 61 GEAFLFGANFTPLAVASSHYVCDPIRTRKLLLNQRELESLFGRINREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDLKDREWQVDKARIMKH 157 >gi|329889561|ref|ZP_08267904.1| ssrA-binding protein [Brevundimonas diminuta ATCC 11568] gi|328844862|gb|EGF94426.1| ssrA-binding protein [Brevundimonas diminuta ATCC 11568] Length = 156 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 76/150 (50%), Positives = 110/150 (73%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P +K +++NR+AR++Y + EAGI L GTE+K+LR + NI++SY + E E+ L N+ Sbjct: 6 PKQKTIAENRRARFDYFLEDHIEAGIQLLGTEIKALRDGRANIAESYVSPEGREMVLINA 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 IP Y ANRFNH PRR+RKLLL +++I +L AV+RDG T+VP+++Y N G AK+++A Sbjct: 66 DIPPYKMANRFNHEPRRHRKLLLHRKQIDKLIGAVQRDGRTIVPVRLYLNEAGKAKLEIA 125 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK +DKRE +RDW R K R+LR+ Sbjct: 126 LAKGKKLHDKREASAERDWQRDKARLLRDK 155 >gi|307129648|ref|YP_003881664.1| trans-translation protein [Dickeya dadantii 3937] gi|306527177|gb|ADM97107.1| trans-translation protein [Dickeya dadantii 3937] Length = 160 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEIEAGLALQGWEVKSLRAGKANISDSYVLMRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P + ++ P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATFTPLHGASSHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR+ K+R+W K RI++ Sbjct: 120 NAWCKVKVGVAKGKKEHDKRDDIKEREWKLDKARIMKN 157 >gi|260576959|ref|ZP_05844940.1| SsrA-binding protein [Rhodobacter sp. SW2] gi|259020801|gb|EEW24116.1| SsrA-binding protein [Rhodobacter sp. SW2] Length = 182 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 81/156 (51%), Positives = 117/156 (75%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P K++++NR+ARY++ I EAGI+L G+EVKSLR+ NI++SYA+ E E Sbjct: 26 MAEKSDPNSKLIAENRRARYDFAIESDIEAGIMLLGSEVKSLRLGGSNIAESYASVEGGE 85 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N YI Y++A F H RR RKLL+SK+E+ RL+ A R+GMT+VP+K+YFN +G+ Sbjct: 86 LWLINGYIAPYVRAKTFGHEERRRRKLLVSKKELVRLWNATAREGMTIVPLKMYFNDRGI 145 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KI L +A+GKKN DKR TE KRDWDRQK R+++++ Sbjct: 146 VKIKLGIAKGKKNQDKRATEAKRDWDRQKARLMKQN 181 >gi|300114421|ref|YP_003760996.1| SsrA-binding protein [Nitrosococcus watsonii C-113] gi|299540358|gb|ADJ28675.1| SsrA-binding protein [Nitrosococcus watsonii C-113] Length = 160 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 S K P +++ NRKAR++Y I +EAG+VL G EVKSLR +V +++ Y + Sbjct: 4 SKKKPSGNPSNIIALNRKARHDYFIEERYEAGLVLEGWEVKSLRAGRVQLNEGYCLLKGG 63 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL ++ + + P R RKLLL +E+ +L AV R G L+P+ +Y+ + Sbjct: 64 EVWLFGVHLSPLNTVSTHIHPDPLRTRKLLLHAKELRKLIGAVERKGYALIPLTLYWK-R 122 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++ALA+GK+ YDKR TEK+++W RQK R+L+ H Sbjct: 123 GRVKLEIALAKGKQKYDKRATEKEKEWTRQKERLLKVH 160 >gi|3211758|gb|AAC23745.1| VacB homolog [Streptococcus pneumoniae] Length = 441 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|156744263|ref|YP_001434392.1| SsrA-binding protein [Roseiflexus castenholzii DSM 13941] gi|189046841|sp|A7NS28|SSRP_ROSCS RecName: Full=SsrA-binding protein gi|156235591|gb|ABU60374.1| SsrA-binding protein [Roseiflexus castenholzii DSM 13941] Length = 158 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 +RGN ++VV+DNRKAR++Y I ++EAG+VLTG+E+KS+R +VN+ Y N E W Sbjct: 2 ARGNGIERVVADNRKARHDYFIEETYEAGVVLTGSEIKSIRAGQVNLRGGYVRIVNGEAW 61 Query: 65 LTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L + +I Y Q+ FNH P R RKLLL +REI R+ V R G TLVP+++Y A Sbjct: 62 LYDVHIAPYEQSGKYFNHEPTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGS-RA 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ LA+GKK YDKRE +R+ R R L+E Sbjct: 121 KVEIGLARGKKLYDKREDIARREARRTIDRALKER 155 >gi|227113537|ref|ZP_03827193.1| SsrA-binding protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328440|ref|ZP_03832464.1| SsrA-binding protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 160 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K N+SDSY TF N Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANLSDSYVTFMN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R RKLLL+KRE+ L+ V RDG T+V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKRELDSLFGRVSRDGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +K+ + +A+GKK++DKR+ K+R+W K RI++ N Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKLDKARIMKNAN 159 >gi|238784167|ref|ZP_04628180.1| hypothetical protein yberc0001_30040 [Yersinia bercovieri ATCC 43970] gi|238714876|gb|EEQ06875.1| hypothetical protein yberc0001_30040 [Yersinia bercovieri ATCC 43970] Length = 164 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSMYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQVDKARIMKHAN 163 >gi|261345463|ref|ZP_05973107.1| SsrA-binding protein [Providencia rustigianii DSM 4541] gi|282566510|gb|EFB72045.1| SsrA-binding protein [Providencia rustigianii DSM 4541] Length = 160 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY + Sbjct: 1 MTKKKPYKPGSATIAMNKRARHEYSIEEEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ P R+RKLLL++RE+ LY V R+G T++ + +Y+ Sbjct: 61 GEAYLFGANFTPLTVASSHVVCDPTRSRKLLLNQRELDTLYGKVNREGYTVIALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK +DKR K R+W K RI++ N Sbjct: 120 NAWCKVKIGVAKGKKAHDKRSDIKDREWQLDKARIMKHSN 159 >gi|22096179|sp|Q9K721|SSRP_BACHD RecName: Full=SsrA-binding protein Length = 154 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 72/148 (48%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y I +FEAG+VL GTE+KS+R + N+ DS+A N E++L N +I Sbjct: 7 KVIAQNKKARHDYFIEETFEAGMVLQGTEIKSIRAGRANLKDSFARVSNGEVYLHNCHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY Q NR+NH P R RKLLL K++I L ++ G T+VP+KIY G AK + L + Sbjct: 67 EYEQGNRYNHEPTRARKLLLHKKQIDTLIGQTQQKGYTIVPLKIYIK-NGFAKCLIGLGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK +DKRET ++RD R+ R L+E N Sbjct: 126 GKKTFDKRETLRRRDAKREVERALKEKN 153 >gi|292900233|ref|YP_003539602.1| SsrA-binding protein [Erwinia amylovora ATCC 49946] gi|291200081|emb|CBJ47207.1| SsrA-binding protein [Erwinia amylovora ATCC 49946] Length = 160 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + P + ++ P R+RKLLL +RE+ L RDG T+V + +Y+ Sbjct: 61 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLIGKANRDGYTIVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + LA+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWAKLKIGLAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159 >gi|323144051|ref|ZP_08078695.1| SsrA-binding protein [Succinatimonas hippei YIT 12066] gi|322416164|gb|EFY06854.1| SsrA-binding protein [Succinatimonas hippei YIT 12066] Length = 159 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 99/159 (62%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + V++ NR+A ++Y I EAG+ L G EVKSLR K NIS++Y T ++ Sbjct: 1 MAGKKKHKQGDNVIAVNRRATHDYFIEDRIEAGLSLQGWEVKSLRAGKANISEAYVTIKD 60 Query: 61 DEIWLTNSYIPEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E L + I + F P R R LLL++REI++L +R G T++P+++Y+ Sbjct: 61 GEAILLGATINPLKNSCAFVVCDPTRTRVLLLNRREINKLIGQSQRQGYTIIPLRLYWKG 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+++ +A+GK+ +DKR++ K++ W R+K RI++++ Sbjct: 121 S-WAKLEIGIAKGKQEHDKRDSLKEKQWQREKERIMKKN 158 >gi|115525036|ref|YP_781947.1| SsrA-binding protein [Rhodopseudomonas palustris BisA53] gi|122295825|sp|Q07M67|SSRP_RHOP5 RecName: Full=SsrA-binding protein gi|115518983|gb|ABJ06967.1| SsrA-binding protein [Rhodopseudomonas palustris BisA53] Length = 157 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 92/156 (58%), Positives = 119/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P KVV++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA E Sbjct: 1 MAEKNERPIKVVAENRKARFNYAIEDTVEAGIALTGTEVKSVRNGKTTIAESYADSRGGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQANRFNH P+R RKLLL +++I++L AV R GMTL+P+K+YFN KG Sbjct: 61 IWLINANIPEYLQANRFNHEPKRPRKLLLHRKQINKLMGAVERQGMTLIPLKLYFNEKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ LALA+GK+ +DKRETEKKRDW ++K R++R Sbjct: 121 AKLLLALAKGKQLHDKRETEKKRDWSKEKGRLMRAK 156 >gi|78222855|ref|YP_384602.1| SsrA-binding protein [Geobacter metallireducens GS-15] gi|78194110|gb|ABB31877.1| SsrA-binding protein [Geobacter metallireducens GS-15] Length = 172 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I FEAG+VL GTEVKSLR+ K N++DS+A + EI+L N + Sbjct: 21 GEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH 80 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLL+ K EI +L+ +R G ++VP+++YF GLAK++L L Sbjct: 81 INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 139 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R+ + LRE + Sbjct: 140 AKGKKLYDKREDMKKKDQSREMAQALRERS 169 >gi|238753942|ref|ZP_04615302.1| hypothetical protein yruck0001_7170 [Yersinia ruckeri ATCC 29473] gi|238707930|gb|EEQ00288.1| hypothetical protein yruck0001_7170 [Yersinia ruckeri ATCC 29473] Length = 164 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GK+++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKRDHDKRDDIKDREWQVDKARIMKHAN 163 >gi|37527252|ref|NP_930596.1| SsrA-binding protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|39932263|sp|Q7N1U1|SSRP_PHOLL RecName: Full=SsrA-binding protein gi|36786686|emb|CAE15752.1| SsrA-binding protein (small protein B) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ NR+AR+ Y I FEAG+ L G EVKSLR K NISDSY ++ Sbjct: 1 MTKKKAHKPGSATIAMNRRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVLLKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + +L + I ++ P R+RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GDAYLFGATITPLNVASSHVVCDPMRSRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVRIGVAKGKKAHDKRSDIKEREWKLDKARIMKN 157 >gi|238759660|ref|ZP_04620820.1| hypothetical protein yaldo0001_24650 [Yersinia aldovae ATCC 35236] gi|238702088|gb|EEP94645.1| hypothetical protein yaldo0001_24650 [Yersinia aldovae ATCC 35236] Length = 164 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEAEFEAGLSLQGWEVKSLRAGKANISDSYVTFRN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L V RDG T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK++DKR+ K R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDHDKRDDIKDREWQLDKARIMKHAN 163 >gi|312880285|ref|ZP_07740085.1| SsrA-binding protein [Aminomonas paucivorans DSM 12260] gi|310783576|gb|EFQ23974.1| SsrA-binding protein [Aminomonas paucivorans DSM 12260] Length = 157 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 98/152 (64%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + V+ N+KAR++Y I+ S E G+VLTGTE+KS+R +VN+ + Y+ ++ E+WL Sbjct: 2 SENGDRTVAQNKKARFDYFILESMEVGVVLTGTEIKSVRAGQVNLKEGYSAVKDGELWLF 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + + +N P R RKLL +K +I RL V+ G+TLVP+K+Y AK++ Sbjct: 62 GVHIAPYEKGSYYNPDPVRPRKLLATKGQILRLSQKVKEKGLTLVPLKMYLKENRWAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L LA+GK+ +DKR++ +RD +R+ R LR Sbjct: 122 LGLAKGKQAHDKRDSVAERDAEREISRALRRR 153 >gi|283835671|ref|ZP_06355412.1| SsrA-binding protein [Citrobacter youngae ATCC 29220] gi|291068886|gb|EFE06995.1| SsrA-binding protein [Citrobacter youngae ATCC 29220] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + + P R RKLLL++RE+ LY + RDG T+V + +Y+ Sbjct: 61 GEAFLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRMNRDGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDVKEREWQLDKARIMKN 157 >gi|307332067|ref|ZP_07611157.1| SsrA-binding protein [Streptomyces violaceusniger Tu 4113] gi|306882290|gb|EFN13386.1| SsrA-binding protein [Streptomyces violaceusniger Tu 4113] Length = 159 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ N+KAR++YHI+ ++E G+VLTGTEVKSLR + ++ D +A + Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHILDTYECGLVLTGTEVKSLRQGRASLVDGFAQLDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N +IPEY Q NH RR RKLLL + EI +L + G TLVP+ +YF Sbjct: 57 GEAWLHNVHIPEYSQGTWTNHSARRRRKLLLHRAEIDKLIGKTQETGHTLVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T ++R R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLRERQDRRESDRAI 150 >gi|259907658|ref|YP_002648014.1| SsrA-binding protein [Erwinia pyrifoliae Ep1/96] gi|224963280|emb|CAX54765.1| Small protein B, tmRNA-binding protein [Erwinia pyrifoliae Ep1/96] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + P + ++ P R+RKLLL +RE+ L+ RDG T+V + +Y+ Sbjct: 61 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKQRELDTLFGKANRDGYTIVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159 >gi|297194075|ref|ZP_06911473.1| SsrA-binding protein [Streptomyces pristinaespiralis ATCC 25486] gi|197720910|gb|EDY64818.1| SsrA-binding protein [Streptomyces pristinaespiralis ATCC 25486] Length = 159 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 102/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ N+KAR++YHI+ ++E G+VL GTEVKSLR + +++D + + Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHILDTYECGLVLMGTEVKSLRQGRASLADGFVQIDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL N ++PEY Q NH RR RKLL+ + EI +L + + G T+VP+ +YF Sbjct: 57 NEAWLHNVHVPEYSQGTWTNHSARRKRKLLMHREEIDKLESKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRREADRAM 150 >gi|183599799|ref|ZP_02961292.1| hypothetical protein PROSTU_03308 [Providencia stuartii ATCC 25827] gi|188022064|gb|EDU60104.1| hypothetical protein PROSTU_03308 [Providencia stuartii ATCC 25827] Length = 160 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY + Sbjct: 1 MTKKKAYKPGSATIALNKRARHEYSIEDEFEAGLSLQGWEVKSLRAGKANIGDSYVLLRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R+RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGANITPLNVASSHVVCDPTRSRKLLLNQRELDTLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK +DKR K+R+W K RI++ N Sbjct: 120 NAWCKVKIGVAKGKKAHDKRSDIKEREWKLDKARIMKHSN 159 >gi|111220819|ref|YP_711613.1| SsrA-binding protein [Frankia alni ACN14a] gi|122954536|sp|Q0RR00|SSRP_FRAAA RecName: Full=SsrA-binding protein gi|111148351|emb|CAJ60023.1| SsrA-binding protein [Frankia alni ACN14a] Length = 159 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 99/152 (65%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K ++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL Sbjct: 3 KETGRKSIAQNKRARHDYDILDTYEAGLVLRGTEVKALRAGRASLVDGFAQVSDGEIWLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY + NH PRR RK+LL + EI +L + G+TLVP+ +Y+ G AKI+ Sbjct: 63 NVHIPEYTEGTWTNHAPRRKRKMLLHRAEIEKLIGQTQEGGLTLVPLALYWKD-GRAKIE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +ALA+G+K+YDKR +RD R+ R + Sbjct: 122 IALARGRKSYDKRHALAERDAAREISREMGRR 153 >gi|253988750|ref|YP_003040106.1| SsrA-binding protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637925|emb|CAR66553.1| small protein b-RNA Binding protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780200|emb|CAQ83361.1| small protein b-RNA Binding protein [Photorhabdus asymbiotica] Length = 160 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ NR+AR+ Y I FEAG+ L G EVKSLR K NISDSY ++ Sbjct: 1 MTKKKAHKPGSATIAMNRRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVLLKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + +L + I ++ P R+RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GDAYLFGATITPLNVASSHVVCDPMRSRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKAHDKRSDIKEREWKLDKARIMKN 157 >gi|317049198|ref|YP_004116846.1| SsrA-binding protein [Pantoea sp. At-9b] gi|316950815|gb|ADU70290.1| SsrA-binding protein [Pantoea sp. At-9b] Length = 160 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P V+ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATVALNKRARHEYFIEEEFEAGMSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ P RNRKLLL +RE+ LY V R+G T+V + IY+ Sbjct: 61 GEAYLFGATFQPLAVASSHVVCDPTRNRKLLLKQRELDSLYGRVNREGYTVVALSIYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR+ K+R+W K RI++ N Sbjct: 120 NAWAKLKIGVARGKKEHDKRDDIKEREWKLDKARIMKNSN 159 >gi|238063027|ref|ZP_04607736.1| SsrA-binding protein [Micromonospora sp. ATCC 39149] gi|237884838|gb|EEP73666.1| SsrA-binding protein [Micromonospora sp. ATCC 39149] Length = 159 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 71/145 (48%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +KVV+ N+KAR++Y I+ ++EAG+ LTGTEVKSLR + ++ D++A EI+L Sbjct: 6 GRKVVASNKKARHDYAILDTYEAGMSLTGTEVKSLRAGRASLIDAFAQERGGEIYLHGMN 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY Q NH PRR RKLLL + EI RL R G+TLVP+++YF+ G AK+++ L Sbjct: 66 IPEYKQGTWTNHEPRRTRKLLLKRLEIDRLIGKTRESGLTLVPLQVYFSD-GWAKVEIGL 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRI 154 A+GKK YDKR+ KRD +R+ R+ Sbjct: 125 AKGKKTYDKRQDLAKRDAEREIARV 149 >gi|269925807|ref|YP_003322430.1| SsrA-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269789467|gb|ACZ41608.1| SsrA-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 161 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 100/160 (62%), Gaps = 3/160 (1%) Query: 1 MSLKSRGN-PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS + + +K ++ NRKA ++Y I EAG+ LTG+E+KS+R KVN+ D+YA E Sbjct: 1 MSKTQQSSAEGQKTIAVNRKAFHDYAIEDKIEAGLALTGSEIKSIRQGKVNLRDAYARVE 60 Query: 60 NDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E W+ N +I Y Q+ FNH P R RKLLL ++EI L + G TLVP+++Y Sbjct: 61 NGEAWVYNMHISPYEQSGKYFNHDPLRPRKLLLHRKEIASLAGKQQIRGYTLVPLRLYLK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AKI++ALA+GK+ YDKR+ +RD R+ ++ Sbjct: 121 -NGIAKIEIALAKGKREYDKRQAIAERDAQREIQAAMKHR 159 >gi|182678836|ref|YP_001832982.1| SsrA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] gi|238691219|sp|B2IDQ9|SSRP_BEII9 RecName: Full=SsrA-binding protein gi|182634719|gb|ACB95493.1| SsrA-binding protein [Beijerinckia indica subsp. indica ATCC 9039] Length = 158 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 90/157 (57%), Positives = 123/157 (78%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND- 61 + ++ K+ ++NRKARYNY I +FEAG++LTGTEVKSLR K I++SYA+ + + Sbjct: 1 MAAKKPSAFKIAAENRKARYNYEIGETFEAGLMLTGTEVKSLRTGKATIAESYASVDREG 60 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E++L N+ IPEYL+ANRFNH P+R RKLLL REI +L V R GMT+VP+KIYFN +G Sbjct: 61 EVFLVNATIPEYLEANRFNHAPKRPRKLLLHGREIAKLSQGVERQGMTIVPLKIYFNDRG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AKI++ALA+GK+ +DKRETEKKRDW+++K R+LR+ Sbjct: 121 RAKIEIALARGKQLHDKRETEKKRDWNKEKGRLLRDK 157 >gi|253687124|ref|YP_003016314.1| SsrA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259511426|sp|C6D970|SSRP_PECCP RecName: Full=SsrA-binding protein gi|251753702|gb|ACT11778.1| SsrA-binding protein [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 160 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K N+SDSY TF N Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANLSDSYVTFMN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R RKLLL+KRE+ L+ V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKRELESLFGRVSREGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +K+ + +A+GKK++DKR+ K+R+W K RI++ N Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKLDKARIMKNAN 159 >gi|300783179|ref|YP_003763470.1| SsrA-binding protein [Amycolatopsis mediterranei U32] gi|299792693|gb|ADJ43068.1| SsrA-binding protein [Amycolatopsis mediterranei U32] Length = 160 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 73/149 (48%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KV+ NRKAR++Y I+ ++E G+VL GTEVKSLR K +++D++AT ++ E+WL Sbjct: 3 KERGQKVIVSNRKARHDYSILDTYECGLVLVGTEVKSLREGKASLADAFATVDDGEVWLR 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY Q NH PRR RKLLL +REI +L + G++LVP+ +YF G K++ Sbjct: 63 NVHIPEYTQGTWTNHMPRRTRKLLLHRREIEKLIGKTKESGLSLVPLSMYFKD-GKVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +ALAQGKK YDKR+T KRD DR + + Sbjct: 122 IALAQGKKAYDKRQTLAKRDADRDIRKAM 150 >gi|298490189|ref|YP_003720366.1| SsrA-binding protein ['Nostoc azollae' 0708] gi|298232107|gb|ADI63243.1| SsrA-binding protein ['Nostoc azollae' 0708] Length = 155 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 N KV++DNR+ARY Y I+ ++E GI LTGTEVKS+R KVN+ D Y N E WL Sbjct: 4 KNEGFKVITDNRQARYLYEILETYEVGIQLTGTEVKSIRAGKVNLKDGYGLIRNGEAWLI 63 Query: 67 NSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N++I Y + FNH PRR RKLLL ++EI +L V + G+TLVP+K+Y G K+ Sbjct: 64 NAHISPYTSSGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLQG-GWVKL 122 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +GKK +DKRE K+R R R ++ + Sbjct: 123 SIGLGKGKKVHDKREDIKRRQDQRDIQRAMKSY 155 >gi|257785070|ref|YP_003180287.1| SsrA-binding protein [Atopobium parvulum DSM 20469] gi|257473577|gb|ACV51696.1| SsrA-binding protein [Atopobium parvulum DSM 20469] Length = 161 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 95/159 (59%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KK ++ NR AR+ Y I +FE G+VLTGTEVKSLR ++D++ + Sbjct: 1 MAENQVKQQGKKSIARNRSARHEYEIGETFECGLVLTGTEVKSLRERGCQLTDTFCLIRD 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E W+ ++ Y +N P R RKLLL +R+I L +R+ G+ LVP++IYF+ Sbjct: 61 GEAWIHGMHLHPYTNGGVWNVDPDRKRKLLLHRRQIDYLDGKLRQKGLALVPLEIYFDEH 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ +AL+QGKK YDKR + KRD DR+ R L+E + Sbjct: 121 NRVKLLIALSQGKKLYDKRASAAKRDSDREIQRALKERS 159 >gi|108798583|ref|YP_638780.1| SsrA-binding protein [Mycobacterium sp. MCS] gi|119867683|ref|YP_937635.1| SsrA-binding protein [Mycobacterium sp. KMS] gi|126434182|ref|YP_001069873.1| SsrA-binding protein [Mycobacterium sp. JLS] gi|122977206|sp|Q1BBL0|SSRP_MYCSS RecName: Full=SsrA-binding protein gi|187611486|sp|A3PWV5|SSRP_MYCSJ RecName: Full=SsrA-binding protein gi|187611487|sp|A1UDD7|SSRP_MYCSK RecName: Full=SsrA-binding protein gi|108769002|gb|ABG07724.1| SsrA-binding protein [Mycobacterium sp. MCS] gi|119693772|gb|ABL90845.1| SsrA-binding protein [Mycobacterium sp. KMS] gi|126233982|gb|ABN97382.1| SsrA-binding protein [Mycobacterium sp. JLS] Length = 168 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 72/152 (47%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + +VV+ NR+AR+NY I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL Sbjct: 13 KDRNNQVVASNRRARHNYAILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLR 72 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY + NH PRRNRKLLL +REI L +R +TLVP+ +YF G K++ Sbjct: 73 NLHIPEYQHGSWTNHAPRRNRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTG-GKVKVE 131 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA+GK+ +DKR+ +RD +R+ R L Sbjct: 132 LALARGKQAHDKRQDLARRDAEREVVRELGRR 163 >gi|291618464|ref|YP_003521206.1| SmpB [Pantoea ananatis LMG 20103] gi|291153494|gb|ADD78078.1| SmpB [Pantoea ananatis LMG 20103] gi|327394860|dbj|BAK12282.1| SsrA-binding protein SmpB [Pantoea ananatis AJ13355] Length = 160 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + ++ P R+RKLLL +RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAYLFGSTFQPLAVASSHVVCDPTRSRKLLLKQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK +DKR K R+W K RI++ N Sbjct: 120 NAWCKLKIGVARGKKEHDKRNDIKDREWQMDKARIMKNAN 159 >gi|50119779|ref|YP_048946.1| SsrA-binding protein [Pectobacterium atrosepticum SCRI1043] gi|61216499|sp|Q6D8Y5|SSRP_ERWCT RecName: Full=SsrA-binding protein gi|49610305|emb|CAG73749.1| SsrA-binding protein [Pectobacterium atrosepticum SCRI1043] Length = 160 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+VL G EVKSLR K N+SDSY TF N Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYSIEEEFEAGLVLQGWEVKSLRAGKANLSDSYVTFMN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R RKLLL+KRE+ L+ V RDG T+V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKREMDSLFGRVSRDGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +K+ + +A+GKK++DKR+ K+R+W K RI++ N Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKLDKARIMKNAN 159 >gi|83858187|ref|ZP_00951709.1| SsrA-binding protein [Oceanicaulis alexandrii HTCC2633] gi|83853010|gb|EAP90862.1| SsrA-binding protein [Oceanicaulis alexandrii HTCC2633] Length = 156 Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 116/156 (74%), Gaps = 3/156 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K +V+ NR+AR++Y I +FEAGI L GTEVKSLR K NI++SY + E+ Sbjct: 1 MSKKKEDAG---LVAVNRRARFDYEIEETFEAGIQLVGTEVKSLRAGKANIAESYVSPED 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L NS IP Y NRFNH PRR RKLLL K+EI+++ +V R+G T+VP+++YFN + Sbjct: 58 GEVYLINSDIPPYDHGNRFNHAPRRRRKLLLKKKEINKIAGSVAREGRTVVPLRMYFNER 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 G+AK+ +ALA+GKK DKRET+K+RDW RQK R+++ Sbjct: 118 GIAKLQIALAKGKKTVDKRETKKERDWQRQKSRLMK 153 >gi|297159940|gb|ADI09652.1| SsrA-binding protein [Streptomyces bingchenggensis BCW-1] Length = 159 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 102/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ N+KAR++YHI+ ++EAG+VLTGTEVKSLR + ++ D +A + Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHILDTYEAGLVLTGTEVKSLRQGRASLVDGFAQLDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N +IPEY Q NH RR RK+LL + EI +L + G TLVP+ +YF Sbjct: 57 GEAWLHNVHIPEYSQGTWTNHSARRKRKMLLHRAEIDKLIVKTQETGHTLVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRRESDRAI 150 >gi|295097186|emb|CBK86276.1| SsrA-binding protein [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 160 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ + P R RKLLL+KRE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAFLFGANFTPLTVASSHYVCDPTRTRKLLLNKRELESLYGRINREGFTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRTDLKAREWQLDKARIMKN 157 >gi|294629644|ref|ZP_06708204.1| SsrA-binding protein [Streptomyces sp. e14] gi|292832977|gb|EFF91326.1| SsrA-binding protein [Streptomyces sp. e14] Length = 159 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 102/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLILDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L A + G T+VP+ +YF Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRLEIDKLEAKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRREAERAM 150 >gi|296104290|ref|YP_003614436.1| SsrA-binding protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058749|gb|ADF63487.1| SsrA-binding protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 160 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ + P R RKLLL+KRE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAFLFGANFTPLTVASSHYVCDPTRTRKLLLNKRELESLYGRINREGFTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKVGVAKGKKQHDKRTDLKEREWQLDKARIMKN 157 >gi|144899920|emb|CAM76784.1| SmpB protein [Magnetospirillum gryphiswaldense MSR-1] Length = 153 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 79/150 (52%), Positives = 110/150 (73%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P+++ + NRKAR+ Y IV + EAGI+L GTE+KSLR K NIS+++A DE+ L N+Y Sbjct: 4 PERIAAQNRKARHEYTIVDTIEAGIMLVGTEIKSLRAGKGNISEAFAGPNGDELILYNAY 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY F H RR RKLLL +RE+ +L A+ +DGMTLVP+ I+FN +G+AK+ L L Sbjct: 64 IPEYQAKMPFPHETRRPRKLLLHRRELRKLVGAIAKDGMTLVPLDIHFNNRGIAKVQLGL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+G+K +DKRE K+RDW+R+K R+LR + Sbjct: 124 AKGRKAHDKREAIKQRDWNREKARVLRNRD 153 >gi|152971469|ref|YP_001336578.1| SsrA-binding protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206575767|ref|YP_002237042.1| SsrA-binding protein [Klebsiella pneumoniae 342] gi|238896065|ref|YP_002920801.1| SsrA-binding protein [Klebsiella pneumoniae NTUH-K2044] gi|262043866|ref|ZP_06016955.1| SsrA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934005|ref|YP_003438064.1| SsrA-binding protein [Klebsiella variicola At-22] gi|290510935|ref|ZP_06550304.1| SsrA-binding protein [Klebsiella sp. 1_1_55] gi|330013062|ref|ZP_08307566.1| SsrA-binding protein [Klebsiella sp. MS 92-3] gi|166223223|sp|A6TCM7|SSRP_KLEP7 RecName: Full=SsrA-binding protein gi|226706526|sp|B5XVJ3|SSRP_KLEP3 RecName: Full=SsrA-binding protein gi|150956318|gb|ABR78348.1| SsrA-binding protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206564825|gb|ACI06601.1| SsrA-binding protein [Klebsiella pneumoniae 342] gi|238548383|dbj|BAH64734.1| SsrA tmRNA-binding protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038800|gb|EEW39982.1| SsrA-binding protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888734|gb|ADC57052.1| SsrA-binding protein [Klebsiella variicola At-22] gi|289775928|gb|EFD83927.1| SsrA-binding protein [Klebsiella sp. 1_1_55] gi|328533610|gb|EGF60325.1| SsrA-binding protein [Klebsiella sp. MS 92-3] Length = 160 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I +EAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEDEYEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 61 GEAFLFGANFTPMAVASTHYVCDPTRTRKLLLNQRELDTLYGRINREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRTDLKDREWALDKARIMKH 157 >gi|310764837|gb|ADP09787.1| SsrA-binding protein (Small protein B) [Erwinia sp. Ejp617] Length = 160 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + P + ++ P R+RKLLL +RE+ L+ RDG T+V + +Y+ Sbjct: 61 GEAFLFGSTFQPLSVASSHIACDPTRSRKLLLKQRELDTLFGKANRDGYTIVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159 >gi|329297608|ref|ZP_08254944.1| SmpB [Plautia stali symbiont] Length = 160 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGMALQGWEVKSLRAGKANISDSYILLSD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + ++ P RNRKLLL++RE+ L+ V R+G T+V + +Y+ Sbjct: 61 GEAYLFGSTFQPLAVASSHVVCDPTRNRKLLLNQRELDSLFGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR K R+W K RI++ + Sbjct: 120 NAWAKLKIGVARGKKEHDKRADIKDREWKMDKARIMKNAS 159 >gi|300023759|ref|YP_003756370.1| SsrA-binding protein [Hyphomicrobium denitrificans ATCC 51888] gi|299525580|gb|ADJ24049.1| SsrA-binding protein [Hyphomicrobium denitrificans ATCC 51888] Length = 157 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 80/156 (51%), Positives = 112/156 (71%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ + +V++NRKAR+ Y I S+EAGI L G+EVKSLR + NI++SYA+ E+ Sbjct: 1 MAAKRDDGSTLVAENRKARHEYFITDSWEAGIELLGSEVKSLRRGQSNIAESYASVEDQG 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL NSYI EY A+ F H PRR R+LL+ +EIH++ AV R GMTLVP+++YFN KG Sbjct: 61 VWLINSYIAEYPGASLFPHEPRRKRRLLMHAKEIHKIAIAVERKGMTLVPLELYFNEKGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + LAQGK DKR+ KRDW+RQK R++R+ Sbjct: 121 AKVKVGLAQGKNQSDKRQDAAKRDWNRQKARLMRDR 156 >gi|317490999|ref|ZP_07949435.1| SsrA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920546|gb|EFV41869.1| SsrA-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 173 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 90/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I EAG+ L G EVKS+R K NI+DSY TF + Sbjct: 14 MTKKKAHKPGSATIAMNKRARHEYFIEEEIEAGLALQGWEVKSMRAGKANITDSYVTFRD 73 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL KRE+ L V RDG T+V + +Y+ Sbjct: 74 GEAYLFGATIQPLNVASTHVVCDPTRTRKLLLKKRELETLIGKVSRDGFTVVALSLYWK- 132 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +K+ + LA+GKK +DKR+ K R+W K RI++ N Sbjct: 133 NAWSKVKIGLAKGKKEHDKRDDIKDREWKLDKARIMKNSN 172 >gi|323963928|gb|EGB59421.1| SsrA-binding protein [Escherichia coli M863] gi|327252325|gb|EGE63997.1| ssrA-binding protein [Escherichia coli STEC_7v] Length = 160 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P + N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIELNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|154253303|ref|YP_001414127.1| SsrA-binding protein [Parvibaculum lavamentivorans DS-1] gi|187629765|sp|A7HX37|SSRP_PARL1 RecName: Full=SsrA-binding protein gi|154157253|gb|ABS64470.1| SsrA-binding protein [Parvibaculum lavamentivorans DS-1] Length = 165 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FEND 61 K + +K+++DNRKAR+NY I +FEAGI L G+EVKSLR + +++++YA Sbjct: 8 AKKKAGDGRKIIADNRKARFNYSIGETFEAGIELKGSEVKSLRTGQGSLNEAYAQVTRTG 67 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E+ L N+YIP YLQAN+FNH RR RKLLL KREI +L AAV+R GMT+VP+++YF KG Sbjct: 68 EVMLVNAYIPIYLQANQFNHETRRPRKLLLHKREIEKLAAAVQRQGMTVVPLRMYFTDKG 127 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ LAQGKK DKRET K+R W+R K R++RE Sbjct: 128 RVKVEIGLAQGKKLADKRETLKERSWERDKARLMREK 164 >gi|284051220|ref|ZP_06381430.1| SsrA-binding protein [Arthrospira platensis str. Paraca] gi|291566597|dbj|BAI88869.1| SsrA-binding protein [Arthrospira platensis NIES-39] Length = 155 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ + K+++DNRKARY Y I+ ++EAGI L GTEVKS+R + N+ D YA + E+W Sbjct: 2 SKDSNGYKILTDNRKARYLYEILDTYEAGIELKGTEVKSIRAGRSNLQDGYALVRDGEVW 61 Query: 65 LTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I Y N FNH PRR RKLLL ++EI++L V + G+TLVP+++Y +G Sbjct: 62 LINVHISPYENTSNFFNHDPRRTRKLLLHRQEINKLIGQVEQKGLTLVPLRMYLK-RGRV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ + LA+GKK +DKRET ++RD R R L++ Sbjct: 121 KVMIGLARGKKLHDKRETIRRRDDARSMQRALKQF 155 >gi|188494999|ref|ZP_03002269.1| SsrA-binding protein [Escherichia coli 53638] gi|188490198|gb|EDU65301.1| SsrA-binding protein [Escherichia coli 53638] Length = 160 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKLGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|304559913|gb|ADM42577.1| tmRNA-binding protein SmpB [Edwardsiella tarda FL6-60] Length = 161 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY +N Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYILLQN 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + P + ++ P R RKLLL +RE+ L+ + RDG T+VP+ +Y+ Sbjct: 61 GEAFLFGATFTPLSVASSHVVCDPTRTRKLLLKERELATLFGSANRDGYTIVPLSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRET-EKKRDWDRQKHRILRE 157 AK+ + +A+GKK +DKR+ K R+W + K RI++ Sbjct: 120 NAWAKLKIGVAKGKKEHDKRDDIIKAREWQQDKARIMKN 158 >gi|254438863|ref|ZP_05052357.1| SsrA-binding protein [Octadecabacter antarcticus 307] gi|198254309|gb|EDY78623.1| SsrA-binding protein [Octadecabacter antarcticus 307] Length = 179 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K NP KV+++NR+ARY++ I E GI+L G+EVKSLRV + NI+DSYAT Sbjct: 22 MAKKPDQNPNYKVIAENRRARYDFAIESDVECGIILAGSEVKSLRVGQSNIADSYATVAE 81 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H R RKLL+SKRE+ R+ A+ R+GMTLVP+ +YFN K Sbjct: 82 GELWLINSYIAPYQQAM-FPHEDRARRKLLVSKRELVRMGNAISREGMTLVPLVMYFNHK 140 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ +A+A+GK+ DKR TE RDW RQK R+LR Sbjct: 141 GRVKVKIAIAKGKQKQDKRATEAARDWGRQKARLLRH 177 >gi|85059782|ref|YP_455484.1| SsrA-binding protein [Sodalis glossinidius str. 'morsitans'] gi|123519047|sp|Q2NRZ6|SSRP_SODGM RecName: Full=SsrA-binding protein gi|84780302|dbj|BAE75079.1| small protein B [Sodalis glossinidius str. 'morsitans'] Length = 160 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I + FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 1 MTKKKEHKPGSATIAQNKRARHEYFIEQEFEAGLSLQGWEVKSLRAGKANIGDSYVLLKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + ++ P R RKLLL+KRE+ L+ V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATFQPLTVASSHVVCDPMRTRKLLLNKRELDSLFGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK YDKR K+R+W K RI++ + Sbjct: 120 NAWVKVKIGVAKGKKEYDKRTDIKEREWQLDKSRIMKHAS 159 >gi|254427993|ref|ZP_05041700.1| SsrA-binding protein [Alcanivorax sp. DG881] gi|196194162|gb|EDX89121.1| SsrA-binding protein [Alcanivorax sp. DG881] Length = 159 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M + N P ++ NRKAR+ YH+ FEAG+VL G EVKSLR K N++++Y + Sbjct: 1 MGKANKKANAPSATIAQNRKARHEYHLEEHFEAGLVLEGWEVKSLRAGKGNLTEAYVLLK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L + + N P R RKLLL +RE+ R++ V++DG T VP+ +Y+ Sbjct: 61 NGEAFLFGARFEPLNTASTHVNPDPTRTRKLLLHRRELGRVFGGVQKDGFTCVPVSLYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG AK D+ALA+GK+ +DKR TEK+RDW+RQK RILR+ Sbjct: 121 -KGFAKCDIALAKGKQKFDKRATEKERDWNRQKQRILRQR 159 >gi|262277155|ref|ZP_06054948.1| SsrA-binding protein [alpha proteobacterium HIMB114] gi|262224258|gb|EEY74717.1| SsrA-binding protein [alpha proteobacterium HIMB114] Length = 156 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 81/155 (52%), Positives = 117/155 (75%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ N +V+ NRKA +NY + EAGI L G+EVKSLR K +I+D+YA EI+ Sbjct: 2 SKKNASSNIVAQNRKASFNYFFEDTLEAGIELLGSEVKSLRAGKGSIADAYALDSEGEIY 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N+YIPEY Q++ NH PRR RKLLL+K+EI+++ + RDG T+VP KIYFN+KG+AK Sbjct: 62 LHNTYIPEYKQSSYNNHDPRRLRKLLLNKKEINKIIGKINRDGFTVVPTKIYFNSKGIAK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++A+A+GKK +DKR+T+K+RDW+R+K R+ R+ + Sbjct: 122 VNIAIAKGKKLHDKRQTKKQRDWNREKSRVFRKSS 156 >gi|271962996|ref|YP_003337192.1| SmpB protein [Streptosporangium roseum DSM 43021] gi|270506171|gb|ACZ84449.1| SmpB protein [Streptosporangium roseum DSM 43021] Length = 155 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KV++ N++A ++YHI ++EAG+VL GTEVKSLR+ + ++ D YA ++ E WL N Sbjct: 5 TGRKVIAQNKRAWHDYHIEDTYEAGLVLQGTEVKSLRLGRASLLDGYAVIKDGEAWLINV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH RR RKLLL ++EI +L + + G+TL+P+ IYF G AKI++ Sbjct: 65 HIPEYTMGTWTNHAARRTRKLLLHRKEIDKLVSKTKEGGLTLIPLAIYFKD-GKAKIEIG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK++DKR+T + R+ R LR N Sbjct: 124 LAKGKKDWDKRQTLAENQAKREMARSLRYRN 154 >gi|6136301|gb|AAF04322.1| SmpB [Bradyrhizobium japonicum] Length = 158 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 87/146 (59%), Positives = 114/146 (78%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P KV+++NRKAR+NY I + EAGI LTGTEVKS+R K I++SYA +N E Sbjct: 1 MADKNERPIKVMAENRKARFNYAIEDTIEAGIALTGTEVKSIRNGKSTIAESYADSKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL N+ IPEYLQ NRFNH P+R RKLLL +R+I++L V R+GMTL+P+K+YFN +G Sbjct: 61 IWLINATIPEYLQGNRFNHEPKRPRKLLLHRRQINKLIGPVDREGMTLIPLKLYFNGRGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWD 148 AK+ LA+A+GKK +DKRETEKKRDW+ Sbjct: 121 AKLQLAVAKGKKLHDKRETEKKRDWE 146 >gi|311695981|gb|ADP98854.1| SsrA-binding protein [marine bacterium HP15] Length = 159 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + P ++ N+KA++ YHI FEAG+ L G EVKSLR K + D+Y ++ Sbjct: 1 MSKK-KPGTPSNTIALNKKAKHEYHIEERFEAGLSLLGWEVKSLRAGKAQLVDAYVLLKD 59 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL +EI ++ V + G T +P+ +Y+ Sbjct: 60 GEAWLLGSHITPLIAASTHVIADPTRTRKLLLHAKEIAKIVGKVNQAGYTCIPLALYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K ++AL +GKK +DKR TEK+RDW+RQK RILRE N Sbjct: 119 NNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRILRETN 158 >gi|297570216|ref|YP_003691560.1| SsrA-binding protein [Desulfurivibrio alkaliphilus AHT2] gi|296926131|gb|ADH86941.1| SsrA-binding protein [Desulfurivibrio alkaliphilus AHT2] Length = 155 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 101/153 (66%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + +P KVV N+KA ++YHI + EAG+VL G E+KSLR K N+ D YA +N+E++ Sbjct: 2 KKKDPGGKVVCTNKKAYHDYHIEQVLEAGMVLNGPEIKSLRAGKANLKDGYAQVKNNELF 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y A+ P R RKLLL +REI++L ++ G TLVP+KIY N +G AK Sbjct: 62 LYNVHISPYPYASMTPPDPLRVRKLLLHRREINKLIGKLKEQGYTLVPLKIYLNPQGRAK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + L LA+GKK YDKR K+++ DR+ R++R Sbjct: 122 LALGLAKGKKLYDKRAALKQKETDRELQRVMRR 154 >gi|15803140|ref|NP_289172.1| SsrA-binding protein [Escherichia coli O157:H7 EDL933] gi|25317468|pir||F85908 small protein B [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12517044|gb|AAG57730.1|AE005491_10 small protein B [Escherichia coli O157:H7 str. EDL933] Length = 160 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKXGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|259502762|ref|ZP_05745664.1| SsrA-binding protein [Lactobacillus antri DSM 16041] gi|259169265|gb|EEW53760.1| SsrA-binding protein [Lactobacillus antri DSM 16041] Length = 157 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M KS +++ N+KAR++Y + + EAG+VLTGTE+KS+R +VN+ D +A +N Sbjct: 1 MVKKSPQKSNDNLIAQNKKARHDYFVTDTVEAGLVLTGTEIKSVRAHRVNLKDGFAQIKN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N +I EY N FN P RNRKLLL K+E+HRL ++ G+TL+P+K+Y Sbjct: 61 GEAWLMNVHISEYDNGNIFNQDPLRNRKLLLHKKELHRLTGVLQDKGVTLIPLKMYIK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L +A+GK YDKRE K+R+ +R+ R+++ + Sbjct: 120 GYAKVLLGVAKGKHQYDKREAIKRREQNREIERVMKHY 157 >gi|148653802|ref|YP_001280895.1| SsrA-binding protein [Psychrobacter sp. PRwf-1] gi|172048566|sp|A5WH04|SSRP_PSYWF RecName: Full=SsrA-binding protein gi|148572886|gb|ABQ94945.1| SsrA-binding protein [Psychrobacter sp. PRwf-1] Length = 158 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P ++ N+KAR+ Y I ++EAG+VL G EVK++R K++I+++Y F +E Sbjct: 1 MAKKTKKPSNQIAANKKARHEYFIEETYEAGLVLQGWEVKAIRAGKMSITEAYVVFRGNE 60 Query: 63 IWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L ++I P + + R RKLLL+++EI L+ AV + G VP+++Y+ Sbjct: 61 AFLFGAHIQPLLSSSTHVDPDSIRTRKLLLNRKEIDTLFGAVNQKGYACVPLEVYWKDS- 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K + LA+GKK +DKR+T K RDW+R K R ++H Sbjct: 120 LVKCKIGLAKGKKLHDKRKTLKDRDWERDKERGFKQH 156 >gi|193071280|ref|ZP_03052200.1| SsrA-binding protein [Escherichia coli E110019] gi|192955433|gb|EDV85916.1| SsrA-binding protein [Escherichia coli E110019] Length = 160 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAEKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 >gi|227529577|ref|ZP_03959626.1| SsrA-binding protein [Lactobacillus vaginalis ATCC 49540] gi|227350536|gb|EEJ40827.1| SsrA-binding protein [Lactobacillus vaginalis ATCC 49540] Length = 155 Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 105/156 (67%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +++ N+KAR++Y + ++EAG+VLTGTE+KS+R +VN+ D +A N E Sbjct: 1 MAKKHENNDNLIAQNKKARHDYFVTDTYEAGLVLTGTEIKSVRAHRVNLKDGFAQIRNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N +I EY FN P RNRKLLL K+EIH+L A++ G+TL+P+K+Y G Sbjct: 61 AWLMNVHISEYDNGTFFNQDPLRNRKLLLHKKEIHKLTGALQDKGVTLIPLKMYIK-HGY 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ L LA+GK YDKRE+ K+R+ +R+ R+++ + Sbjct: 120 AKVLLGLAKGKHEYDKRESIKRREANREMERVMKHY 155 >gi|269955838|ref|YP_003325627.1| SsrA-binding protein [Xylanimonas cellulosilytica DSM 15894] gi|269304519|gb|ACZ30069.1| SsrA-binding protein [Xylanimonas cellulosilytica DSM 15894] Length = 177 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 70/150 (46%), Positives = 100/150 (66%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P + VV++N+KAR++Y I EAGIVL+GTEVK+LR+ + ++ D + + E WL Sbjct: 25 PVRTVVANNKKARHDYVIEDVLEAGIVLSGTEVKALRMGRASLVDGFVLIDRGEAWLEGV 84 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY Q NH PRR RKLLL K EI RL V+ G T+VP+ +YF G AK+++A Sbjct: 85 HIPEYFQGTWNNHAPRRKRKLLLHKDEIVRLSHKVQEKGHTIVPLSLYFLD-GRAKVEIA 143 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR+T +++ R+ R +R+ Sbjct: 144 LARGKKEYDKRQTLREQQDKREAQRAMRQR 173 >gi|260429421|ref|ZP_05783398.1| SsrA-binding protein [Citreicella sp. SE45] gi|260420044|gb|EEX13297.1| SsrA-binding protein [Citreicella sp. SE45] Length = 156 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 82/157 (52%), Positives = 116/157 (73%), Gaps = 2/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + +P KV+++NR+AR++Y I E GIVL+G+EVKSLR + NI++SYA EN Sbjct: 1 MA-QPKTDPNYKVIAENRRARFDYAIEDDLECGIVLSGSEVKSLRENTSNIAESYAAVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y F H RR RKLL+SK+E+ RL+ +R GMT+VP+ +YFN K Sbjct: 60 SELWLVNSYIAPYE-RAMFGHEERRRRKLLVSKKELARLWNETQRKGMTIVPLVLYFNHK 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G+ K+ + +A+GKKN+DKRETE KRDW+RQK R+L++ Sbjct: 119 GVVKLKVGIAKGKKNHDKRETEAKRDWNRQKQRLLKQ 155 >gi|308187825|ref|YP_003931956.1| SsrA-binding protein (Small protein B) [Pantoea vagans C9-1] gi|308058335|gb|ADO10507.1| SsrA-binding protein (Small protein B) [Pantoea vagans C9-1] Length = 160 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P V+ N++AR+ Y I +EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATVAMNKRARHEYFIEEEYEAGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + ++ P R+RKLLL +RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGSTFQPLAVASSHVVCDPTRSRKLLLKQRELDSLYGRVNREGYTIVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR+ K R+W K RI++ Sbjct: 120 NAWCKLKIGVARGKKEHDKRDDIKDREWQLDKARIMKN 157 >gi|291439317|ref|ZP_06578707.1| SsrA-binding protein [Streptomyces ghanaensis ATCC 14672] gi|291342212|gb|EFE69168.1| SsrA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 163 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 100/155 (64%), Gaps = 1/155 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MGRTMAKEKGRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLTD 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF Sbjct: 61 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 120 GRAKVEIALAKGKKEYDKRQTLREKQDRREAERAM 154 >gi|110833166|ref|YP_692025.1| SsrA-binding protein [Alcanivorax borkumensis SK2] gi|110646277|emb|CAL15753.1| ssrA-binding protein [Alcanivorax borkumensis SK2] Length = 166 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M + P ++ NRKAR+ YH+ FEAG+VL G EVKSLR K N++++Y + Sbjct: 8 MGKANKKAKAPSATIAQNRKARHEYHLEEHFEAGLVLEGWEVKSLRAGKGNLTEAYVLLK 67 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L + + N P R RKLLL +RE+ R++ V++DG T VP+ +Y+ Sbjct: 68 NGEAFLFGARFEPLNTASTHVNPDPTRTRKLLLHRRELGRVFGGVQKDGFTCVPVSLYWK 127 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG AK D+ALA+GK+ +DKR TEK+RDW+RQK R+LR+ Sbjct: 128 -KGFAKCDIALAKGKQKFDKRATEKERDWNRQKQRVLRQR 166 >gi|294678896|ref|YP_003579511.1| ssrA-binding protein [Rhodobacter capsulatus SB 1003] gi|294477716|gb|ADE87104.1| ssrA-binding protein [Rhodobacter capsulatus SB 1003] Length = 157 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 84/156 (53%), Positives = 119/156 (76%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P K++++NR+ARY+Y I EAGI+L G+EVK+LR + NI++SYA+ EN E Sbjct: 1 MAQKSDPNSKLIAENRQARYHYAIESDLEAGIMLLGSEVKALRTGQSNIAESYASIENGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL NSYI Y QA+ F H RR+RKLL+SK+E+ RL+ AV R+GMTLVP+ +YFN +G Sbjct: 61 LWLINSYIAAYQQASVFGHEERRHRKLLVSKKELARLWTAVGREGMTLVPLALYFNDRGK 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK DKRETE KRDW+RQK R+L+++ Sbjct: 121 VKLKLGVAKGKKLADKRETEAKRDWNRQKQRLLKQN 156 >gi|227549376|ref|ZP_03979425.1| SsrA-binding protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078561|gb|EEI16524.1| SsrA-binding protein [Corynebacterium lipophiloflavum DSM 44291] Length = 163 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P VV+ NRKAR++Y I+ ++E GIVL GTE+KSLR K ++ +++AT +N Sbjct: 1 MAKKKKKSPSGNVVATNRKARHDYTILDTWETGIVLVGTEIKSLRDGKASLVEAFATIDN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N +IPEY + NH PRR RKLL+ + EI L VR TLVP+ IY Sbjct: 61 GEVWLRNLHIPEYSMGSWTNHSPRRTRKLLMHRSEIDSLEGKVRDGNRTLVPLSIYLKE- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK++L LAQGK++YDKR+ KKR DR+ R L + Sbjct: 120 GKAKVELGLAQGKQDYDKRQAIKKRTEDREIARDLGKK 157 >gi|50954996|ref|YP_062284.1| SsrA-binding protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|61216491|sp|Q6AEL7|SSRP_LEIXX RecName: Full=SsrA-binding protein gi|50951478|gb|AAT89179.1| small protein B [Leifsonia xyli subsp. xyli str. CTCB07] Length = 158 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 104/158 (65%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +KVV+ NR+AR++Y I ++EAG+VLTGTEVKSLR+ + ++ D YA + Sbjct: 1 MAK----ERGQKVVATNRRARHDYTIEDTYEAGLVLTGTEVKSLRLGRASLVDGYAFVDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +IPEY NH PRR RKLLL K +I ++ + V++ G T+VP++IYFN Sbjct: 57 GEAWLDAVHIPEYADGTWNNHAPRRKRKLLLHKAQILKIESKVKQGGYTIVPLQIYFND- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ +A+GK+ YDKR+ ++R +R+ R + Sbjct: 116 GRAKVEIGVAKGKREYDKRQALRERQDNREAQRAMASR 153 >gi|262203330|ref|YP_003274538.1| SsrA-binding protein [Gordonia bronchialis DSM 43247] gi|262086677|gb|ACY22645.1| SsrA-binding protein [Gordonia bronchialis DSM 43247] Length = 157 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 97/152 (63%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + ++ NRKAR++Y I+ +FEAGI L GTEVKSLR K ++ D++AT ++ E+WL Sbjct: 3 KEKGRTAIATNRKARHDYAILDTFEAGIALVGTEVKSLRAGKASLVDAFATIDDGEVWLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY + NH RR RKLL+ +REI L +R +TLVP+ +YFN G K++ Sbjct: 63 ALHIPEYGNGSWTNHTVRRKRKLLMHRREIDTLIGKIRDGNLTLVPLSMYFND-GRVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA+GK+ +DKR+ +R R+ R L Sbjct: 122 LALARGKQAHDKRQDIARRTAQREVERELGRR 153 >gi|89897581|ref|YP_521068.1| SsrA-binding protein [Desulfitobacterium hafniense Y51] gi|219670708|ref|YP_002461143.1| SsrA-binding protein [Desulfitobacterium hafniense DCB-2] gi|122480579|sp|Q24MW8|SSRP_DESHY RecName: Full=SsrA-binding protein gi|254778357|sp|B8FXV6|SSRP_DESHD RecName: Full=SsrA-binding protein gi|89337029|dbj|BAE86624.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219540968|gb|ACL22707.1| SsrA-binding protein [Desulfitobacterium hafniense DCB-2] Length = 156 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 76/150 (50%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + KV+SDNRKA ++Y + EAG++LTGTE+KS+R +VN+ DSYA EN E+WL Sbjct: 3 SEGIKVISDNRKAYHDYFVEEKLEAGVILTGTEIKSIRNGRVNLKDSYARIENGEVWLYQ 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL++ EI +L V++ G+TL+P KIY +GLAKI+L Sbjct: 63 LHISPYEQGNRFNHDPLRKRKLLLNRSEIIKLVGKVQQQGLTLIPTKIYLK-RGLAKIEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + +GKKNYDKR+ +RD R+ R R+ Sbjct: 122 GVCRGKKNYDKRQDIAERDAKREIERHFRD 151 >gi|312199806|ref|YP_004019867.1| SsrA-binding protein [Frankia sp. EuI1c] gi|311231142|gb|ADP83997.1| SsrA-binding protein [Frankia sp. EuI1c] Length = 159 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 103/155 (66%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K ++ NR+AR+ Y I+ ++EAG+VLTGTEVKSLR+ + ++ D +A EN Sbjct: 1 MAK----ETGRKNIAQNRRARHEYDILDTYEAGVVLTGTEVKSLRMGRASLVDGFAQIEN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL +IPEY + NH PRR RKLLL + EI +L + G+TLVP+ +Y+ Sbjct: 57 GEVWLHAVHIPEYTEGTWTNHAPRRKRKLLLHRDEIEKLVGKTKEGGLTLVPLALYWKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AKI++ALA+G+K+YDKR ++D R+ RI+ Sbjct: 116 GRAKIEIALARGRKSYDKRHALAEKDAKREMSRIM 150 >gi|296140710|ref|YP_003647953.1| SsrA-binding protein [Tsukamurella paurometabola DSM 20162] gi|296028844|gb|ADG79614.1| SsrA-binding protein [Tsukamurella paurometabola DSM 20162] Length = 159 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 104/158 (65%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + V++ NRKAR+NY I+ +FEAG+VL GTEVK+LR K ++ D+YAT ++ Sbjct: 1 MAKEK----GRSVIASNRKARHNYAILDTFEAGVVLVGTEVKALREGKASLVDAYATIDD 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL +IPEY + NH PRR RKLL+ +REI L VR TLVP+ +YF+ Sbjct: 57 GEVWLRGLHIPEYGNGSWTNHTPRRTRKLLMHRREIDSLTGKVREGNQTLVPLSMYFSD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GK++YDKR+ +R +R+ R L Sbjct: 116 GRVKVELALAKGKQDYDKRQDIARRTAERELVRELGRR 153 >gi|134097704|ref|YP_001103365.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|291006336|ref|ZP_06564309.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338] gi|166223449|sp|A4F8R5|SSRP_SACEN RecName: Full=SsrA-binding protein gi|133910327|emb|CAM00440.1| SsrA-binding protein [Saccharopolyspora erythraea NRRL 2338] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 106/155 (68%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ NR+AR+++ ++ ++E GIVLTGTEVKSLR K ++ D +AT + Sbjct: 1 MAK----EQGRKLIAQNRRARHDWSVLDTYETGIVLTGTEVKSLRQGKASLVDGFATVDR 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N +IPEY + NH PRR+RKLLL K EI RL ++ G++L+P+ +YF+ Sbjct: 57 GEVWLRNVHIPEYTEGTWTNHEPRRSRKLLLHKGEIIRLIGKIQESGLSLIPLSLYFSD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK++LALA+GKK +DKR+ K+D R+ R + Sbjct: 116 GKAKVELALAKGKKAHDKRQDLAKKDAQREIERAM 150 >gi|289522389|ref|ZP_06439243.1| SsrA-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504225|gb|EFD25389.1| SsrA-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 152 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 95/146 (65%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+V+ NR+AR++Y I+ ++EAG+VLTGTE+KS+R +VN+ D YA E E WL N +I Sbjct: 3 KKIVAQNRRARHDYFILETYEAGLVLTGTEIKSIRAGRVNLKDGYAKIEKGECWLYNVHI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + +NH P R RKLLL EI RL ++ G+TL+P+ IY AK++LALA Sbjct: 63 SPYEKGTYYNHDPLRPRKLLLHNDEIKRLIGKTQQQGLTLIPLSIYLKNGKWAKVELALA 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156 QGKK YDKR +RD Q R + Sbjct: 123 QGKKVYDKRHAIAERDARLQMERARK 148 >gi|323704176|ref|ZP_08115755.1| SsrA-binding protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536242|gb|EGB26014.1| SsrA-binding protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 155 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 73/151 (48%), Positives = 104/151 (68%), Gaps = 1/151 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + KV++ N+KA ++Y I +EAGIVL GTEVKS+R+ KVN+ DS+A EN+E++L Sbjct: 2 SSENIKVLAQNKKASHDYFIDEVYEAGIVLFGTEVKSVRMGKVNLKDSFALIENNEVFLY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + N FN P R RKLLL++REI++L V + G TLVP+++Y GL K++ Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRREINKLTGYVTQKGYTLVPLRVYLK-HGLVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+A+GKK YDKRE +RD R+ R +E Sbjct: 121 LAVARGKKLYDKREDMARRDAKREIERHFKE 151 >gi|83644078|ref|YP_432513.1| SsrA-binding protein [Hahella chejuensis KCTC 2396] gi|123534495|sp|Q2SMN6|SSRP_HAHCH RecName: Full=SsrA-binding protein gi|83632121|gb|ABC28088.1| SsrA-binding protein [Hahella chejuensis KCTC 2396] Length = 160 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 102/159 (64%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS N ++ N+KAR++YHIV FEAG+ LTG EVKSLR K + DSY ++ Sbjct: 1 MSQAKNKNTGS-TIALNKKARFDYHIVEKFEAGLALTGWEVKSLRAGKCQLVDSYVLLKD 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++I + + P R RKLLL +RE+++L AV + G T VP+ +Y+ Sbjct: 60 SEAWLLGAHITPLKEASTHVIADPTRTRKLLLHRRELNKLIGAVSQTGHTCVPLALYWKG 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K ++AL +GKK++DKRETEK+RDW+RQK R++R+H Sbjct: 120 N-KVKCEIALVKGKKDFDKRETEKERDWNRQKQRVIRDH 157 >gi|300724097|ref|YP_003713414.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus nematophila ATCC 19061] gi|297630631|emb|CBJ91296.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus nematophila ATCC 19061] Length = 160 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY ++ Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISESYVLLKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + +L + I ++ P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GDAFLFGATITPLNVASSHVVCDPTRLRKLLLNQRELDSLYGRVNREGYTIVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +KI + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWSKIKIGVAKGKKAHDKRSDIKEREWKLDKARIMKN 157 >gi|118473405|ref|YP_886451.1| SsrA-binding protein [Mycobacterium smegmatis str. MC2 155] gi|166223228|sp|A0QU63|SSRP_MYCS2 RecName: Full=SsrA-binding protein gi|118174692|gb|ABK75588.1| SsrA-binding protein [Mycobacterium smegmatis str. MC2 155] Length = 161 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS KVV+ NRKAR+NY I+ ++EAGIVL GTEVKSLR + +++D++AT ++ Sbjct: 1 MTKKSAS-SNNKVVATNRKARHNYTILDTYEAGIVLMGTEVKSLREGQASLADAFATVDD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIWL N +I EY NH PRRNRKLLL +++I L +R +TLVP+ IYF Sbjct: 60 GEIWLRNVHIAEYHHGTWTNHAPRRNRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD- 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GK+ +DKR+ +RD R+ R L Sbjct: 119 GKVKVELALARGKQAHDKRQDLARRDAQREVIRELGRR 156 >gi|309810750|ref|ZP_07704557.1| SsrA-binding protein [Dermacoccus sp. Ellin185] gi|308435287|gb|EFP59112.1| SsrA-binding protein [Dermacoccus sp. Ellin185] Length = 158 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KV+++N+KAR++YHI + EAG+ L GTEVKSLR+ + ++ D Y + E+WL Sbjct: 3 KEHGTKVIANNKKARHDYHIEETLEAGLSLMGTEVKSLRMGRASLVDGYVLERDGEMWLE 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEYLQ NH RR RKLLL K EI +L + G T+VP+ +YF G AK++ Sbjct: 63 NVHIPEYLQGTWTNHSARRRRKLLLHKAEILKLANKAQSKGYTIVPLSLYFKD-GRAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +ALA+GK+ +DKR+T ++R + + R + Sbjct: 122 IALARGKQLHDKRQTLRERQDNLEAQREM 150 >gi|116333317|ref|YP_794844.1| SsrA-binding protein [Lactobacillus brevis ATCC 367] gi|122269995|sp|Q03SK9|SSRP_LACBA RecName: Full=SsrA-binding protein gi|116098664|gb|ABJ63813.1| SsrA-binding protein [Lactobacillus brevis ATCC 367] Length = 157 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 78/158 (49%), Positives = 110/158 (69%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P V++ NRKAR++Y ++ + EAGI LTGTE+KS+R +VN+ D +A N Sbjct: 1 MAKKKSKKTPDNVLAQNRKARHDYTVLETVEAGIALTGTEIKSVRERRVNLQDGFAQIRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL N +I EY+Q NRFNH P RNRKLLL K+EI RL A G+TLVP+++Y Sbjct: 61 NEAWLMNVHISEYVQGNRFNHDPLRNRKLLLHKKEIRRLGQATMDKGVTLVPLRMYLK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +AQGK+ +DKRET K+R+ DRQ R+++ + Sbjct: 120 GFAKVLIGVAQGKREFDKRETIKRREQDRQIARVMKHY 157 >gi|188533118|ref|YP_001906915.1| Small protein B, tmRNA-binding protein [Erwinia tasmaniensis Et1/99] gi|238689731|sp|B2VEC0|SSRP_ERWT9 RecName: Full=SsrA-binding protein gi|188028160|emb|CAO96018.1| Small protein B, tmRNA-binding protein [Erwinia tasmaniensis Et1/99] Length = 160 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FE G+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKSHKPGSATIAMNKRARHEYFIEEEFETGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + P + ++ P R+RKLLL KRE+ L RDG T+V + +Y+ Sbjct: 61 GEAFLFGSTFQPLSVASSHIVCDPTRSRKLLLKKRELDTLIGKANRDGYTIVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + LA+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWAKLKIGLAKGKKEHDKRDDIKDREWKLDKARIMKHAN 159 >gi|167628767|ref|YP_001679266.1| ssra-binding protein [Heliobacterium modesticaldum Ice1] gi|167591507|gb|ABZ83255.1| ssra-binding protein [Heliobacterium modesticaldum Ice1] Length = 155 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 70/150 (46%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KV+ +NR+AR++YHI ++EAG+ L GTE+KSLR K N+ D++A EN E+ L N Sbjct: 3 DGHKVLCENRRARHDYHIDETYEAGMALKGTEIKSLRQGKGNLKDAFARVENGEVLLYNM 62 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I + Q + FNH P R RKLLL + EI +L AA + G+TLVP+++Y +G AK++LA Sbjct: 63 HISPFEQGHSFNHEPTRTRKLLLHRNEIRKLSAATYQKGLTLVPLRVYLK-RGYAKLELA 121 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKK YDKR+ +RD +R+ R +R+ Sbjct: 122 IARGKKLYDKRDAIARRDAEREMARAMRQR 151 >gi|239930941|ref|ZP_04687894.1| SsrA-binding protein [Streptomyces ghanaensis ATCC 14672] Length = 159 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 102/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLTD 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRREAERAM 150 >gi|126730891|ref|ZP_01746700.1| SsrA-binding protein [Sagittula stellata E-37] gi|126708607|gb|EBA07664.1| SsrA-binding protein [Sagittula stellata E-37] Length = 157 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 86/157 (54%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P KV+++NR+ARY+Y I E GI+LTG+EVKSLR + NI++SYA E+ Sbjct: 1 MAKKPDQSPNYKVIAENRRARYDYAIEDDLECGIMLTGSEVKSLRENTSNIAESYAAVED 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y F H RR RKLL SKRE+ RL+ +R GMTLVP+ +YFN K Sbjct: 61 GELWLVNSYIAPYE-RAMFGHEERRRRKLLASKRELARLWNDTQRKGMTLVPLVLYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G+AKI + +A+GKK DKRETE KRDW RQK R+L++ Sbjct: 120 GIAKIKIGIAKGKKTVDKRETEAKRDWARQKQRLLKQ 156 >gi|293394809|ref|ZP_06639099.1| SsrA-binding protein [Serratia odorifera DSM 4582] gi|291422560|gb|EFE95799.1| SsrA-binding protein [Serratia odorifera DSM 4582] Length = 160 Score = 178 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF + Sbjct: 1 MTKKKAYKPGSATIAQNKRARFEYFIEDEFEAGLSLQGWEVKSLRAGKANISDSYITFRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R+RKLLL+KRE+ L V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPTRSRKLLLNKRELDSLLGRVNREGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWVKLKIGVAKGKKEHDKRDNIKDREWQTAKARIMKHAN 159 >gi|239981926|ref|ZP_04704450.1| SsrA-binding protein [Streptomyces albus J1074] gi|291453780|ref|ZP_06593170.1| SsrA-binding protein [Streptomyces albus J1074] gi|291356729|gb|EFE83631.1| SsrA-binding protein [Streptomyces albus J1074] Length = 159 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 102/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AKI++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKIEIALAKGKKEYDKRQTLREKQDRREAERAM 150 >gi|163793034|ref|ZP_02187010.1| SsrA-binding protein [alpha proteobacterium BAL199] gi|159181680|gb|EDP66192.1| SsrA-binding protein [alpha proteobacterium BAL199] Length = 156 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 78/148 (52%), Positives = 109/148 (73%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 ++ V+ NR+AR++Y I + EAG++LTG+EVKSLR + +I ++YA E + L N++I Sbjct: 8 RREVARNRRARFDYMIEETVEAGLMLTGSEVKSLREGRASIGEAYAGEERGALALINAHI 67 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PEY A FNH PRR R+LL+ +RE RL +RRDG TLVP+ +YFN +G+AK+++ LA Sbjct: 68 PEYKPAAPFNHEPRRIRRLLVHRRERDRLLGMIRRDGYTLVPVSLYFNDRGIAKLEIGLA 127 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK DKRE KKRDW+RQK RI+RE Sbjct: 128 RGKKMADKREDSKKRDWERQKARIMREK 155 >gi|325291290|ref|YP_004267471.1| SsrA-binding protein [Syntrophobotulus glycolicus DSM 8271] gi|324966691|gb|ADY57470.1| SsrA-binding protein [Syntrophobotulus glycolicus DSM 8271] Length = 156 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 83/150 (55%), Positives = 112/150 (74%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KV+++NRKAR++Y I ++EAG++LTGTE+KS+R +VN+ DSYA +N E+WL N++ Sbjct: 4 GIKVIAENRKARHDYFIEETYEAGVILTGTEIKSIRGGRVNLKDSYAEIKNREVWLLNTH 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y + NRFNH P R RKLLL+KREI +L A V++ GMTLVP+KIY + GLAKI+L L Sbjct: 64 ISPYEKGNRFNHDPLRKRKLLLNKREIIKLSAKVQQQGMTLVPIKIYLS-HGLAKIELGL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKKNYDKR+ +D R+ R LRE N Sbjct: 123 CKGKKNYDKRDDMADKDAKREIERTLRERN 152 >gi|209573994|gb|ACI62935.1| SsrA tmRNA-binding protein SmpB [Acidithiobacillus thiooxidans] Length = 153 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 60/145 (41%), Positives = 95/145 (65%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NR+A+++Y I FEAGIVL G EVKS+R ++N+ DSY ++ E+WL ++I Sbjct: 4 TIALNREAKHDYFIEERFEAGIVLEGWEVKSMRAGRLNLKDSYVIVKDAELWLLGAHISP 63 Query: 73 -YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + N P R RKLL+ + +I+R+ +V R G T+VP+ +Y+ G AK ++AL + Sbjct: 64 LLTASTHINPDPTRTRKLLMHREQINRMIGSVERKGFTIVPLAMYWKQ-GRAKAEIALVK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GK+ +DKR T K+R+W R K RI++ Sbjct: 123 GKQEHDKRATIKEREWQRDKARIMK 147 >gi|157371925|ref|YP_001479914.1| SsrA-binding protein [Serratia proteamaculans 568] gi|166979671|sp|A8GI46|SSRP_SERP5 RecName: Full=SsrA-binding protein gi|157323689|gb|ABV42786.1| SsrA-binding protein [Serratia proteamaculans 568] Length = 160 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF + Sbjct: 1 MTKKKAHKPGSATIAQNKRARFEYAIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ P R RKLLL KRE+ L V RDG T+V + +Y+ Sbjct: 61 GEAYLFGATVSPLNVASSHVVCDPTRTRKLLLKKRELDSLLGRVNRDGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI + +A+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWAKIKIGVAKGKKEHDKRDDIKDREWQTAKSRIMKHAN 159 >gi|302521480|ref|ZP_07273822.1| SsrA-binding protein [Streptomyces sp. SPB78] gi|318056795|ref|ZP_07975518.1| SsrA-binding protein [Streptomyces sp. SA3_actG] gi|318077968|ref|ZP_07985300.1| SsrA-binding protein [Streptomyces sp. SA3_actF] gi|302430375|gb|EFL02191.1| SsrA-binding protein [Streptomyces sp. SPB78] Length = 160 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYTIIDTYEAGMVLTGTEVKSLRQGRASLVDGFVQIDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL EI +L + + G T++P+ +YF Sbjct: 57 GEAWLHNVHVPEYSQGTWTNHSARRRRKLLLHAEEIAKLDSKSQETGHTIIPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK ++ALA+GK+ YDKR+T +++ R+ HR + Sbjct: 116 GRAKCEIALAKGKREYDKRQTLREKQDTREAHRAM 150 >gi|121534531|ref|ZP_01666353.1| SsrA-binding protein [Thermosinus carboxydivorans Nor1] gi|121306783|gb|EAX47703.1| SsrA-binding protein [Thermosinus carboxydivorans Nor1] Length = 156 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 85/152 (55%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K+V++NRKAR++YHI ++EAGIVLTGTEVKSLR K N+ DSYA EN E+ L Sbjct: 3 KGSKIKIVAENRKARHDYHIHETYEAGIVLTGTEVKSLRAGKANLKDSYARIENAEVMLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y Q NRFNH P R RKLLL + EI++L + G TLVP+KIYF +G AK++ Sbjct: 63 NMHISPYEQGNRFNHEPLRTRKLLLHRYEINKLIGKTKEKGYTLVPLKIYFT-RGKAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA GKK YDKRE +RD R+ R LRE Sbjct: 122 LALASGKKLYDKREDMAERDARREMDRALREK 153 >gi|22126955|ref|NP_670378.1| SsrA-binding protein [Yersinia pestis KIM 10] gi|45440889|ref|NP_992428.1| SsrA-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108806576|ref|YP_650492.1| SsrA-binding protein [Yersinia pestis Antiqua] gi|108813057|ref|YP_648824.1| SsrA-binding protein [Yersinia pestis Nepal516] gi|145599861|ref|YP_001163937.1| SsrA-binding protein [Yersinia pestis Pestoides F] gi|162421221|ref|YP_001605898.1| SsrA-binding protein [Yersinia pestis Angola] gi|167424217|ref|ZP_02315970.1| SsrA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170025202|ref|YP_001721707.1| SsrA-binding protein [Yersinia pseudotuberculosis YPIII] gi|186894532|ref|YP_001871644.1| SsrA-binding protein [Yersinia pseudotuberculosis PB1/+] gi|21959996|gb|AAM86629.1|AE013908_12 small protein B [Yersinia pestis KIM 10] gi|45435747|gb|AAS61305.1| small protein B [Yersinia pestis biovar Microtus str. 91001] gi|108776705|gb|ABG19224.1| SsrA-binding protein [Yersinia pestis Nepal516] gi|108778489|gb|ABG12547.1| SsrA-binding protein [Yersinia pestis Antiqua] gi|145211557|gb|ABP40964.1| SsrA-binding protein [Yersinia pestis Pestoides F] gi|162354036|gb|ABX87984.1| SsrA-binding protein [Yersinia pestis Angola] gi|167057066|gb|EDR66829.1| SsrA-binding protein [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751736|gb|ACA69254.1| SsrA-binding protein [Yersinia pseudotuberculosis YPIII] gi|186697558|gb|ACC88187.1| SsrA-binding protein [Yersinia pseudotuberculosis PB1/+] gi|262361146|gb|ACY57867.1| SsrA-binding protein [Yersinia pestis D106004] Length = 164 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK+ DKR+ + R+W K RI++ N Sbjct: 124 NAWVKVKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 163 >gi|302390351|ref|YP_003826172.1| SsrA-binding protein [Thermosediminibacter oceani DSM 16646] gi|302200979|gb|ADL08549.1| SsrA-binding protein [Thermosediminibacter oceani DSM 16646] Length = 155 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 108/159 (67%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + + NRKAR++YHI+ ++EAGIVL GTEVKSLR K N+ DS+A E Sbjct: 1 MREKKSRD-----LVTNRKARHDYHIIETYEAGIVLAGTEVKSLREGKANLKDSFARVEK 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + N FN P R RKLL+ +REI RLY V+ G+TLVP+++Y N + Sbjct: 56 GELYLYNMHISPYEKGNIFNKDPLRPRKLLMHRREIDRLYGLVKEKGVTLVPLRVYLNER 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 GL K++LA+A+GK YDKRE K+RD +R+ + +E+N Sbjct: 116 GLVKVELAVAKGKTLYDKREDIKRRDAEREMEKAFKEYN 154 >gi|15827281|ref|NP_301544.1| SsrA-binding protein [Mycobacterium leprae TN] gi|221229759|ref|YP_002503175.1| SsrA-binding protein [Mycobacterium leprae Br4923] gi|3334332|sp|O32881|SSRP_MYCLE RecName: Full=SsrA-binding protein gi|254778372|sp|B8ZUV3|SSRP_MYCLB RecName: Full=SsrA-binding protein gi|2326689|emb|CAB11000.1| small protein B [Mycobacterium leprae] gi|13092830|emb|CAC30180.1| putative SsrA-binding protein [Mycobacterium leprae] gi|219932866|emb|CAR70765.1| putative SsrA-binding protein [Mycobacterium leprae Br4923] Length = 160 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + K++V+ NRKAR++Y I+ FEAG+ L GTEVKSLR +++D++AT ++ E Sbjct: 1 MARNPRGGKQIVATNRKARHDYAIIELFEAGVALLGTEVKSLREGHASLADAFATVDSGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N +IPEY + NH PRRNRKLLL +R+I L +R + LVP+ +YF G Sbjct: 61 VWLRNMHIPEYQHGSWTNHDPRRNRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFAE-GK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GKK +DKR+ +RD R+ R L Sbjct: 120 VKVELALARGKKLHDKRQDMARRDAQREVIRELGRR 155 >gi|83311643|ref|YP_421907.1| SsrA-binding protein [Magnetospirillum magneticum AMB-1] gi|123541718|sp|Q2W477|SSRP_MAGMM RecName: Full=SsrA-binding protein gi|82946484|dbj|BAE51348.1| tmRNA-binding protein [Magnetospirillum magneticum AMB-1] Length = 153 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 80/149 (53%), Positives = 107/149 (71%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P V + NR+AR+ Y IV EAGI+L GTEVKSLRV K NI++++A E++L N+Y Sbjct: 4 PGHVAAQNRRARHEYFIVSEVEAGIMLVGTEVKSLRVGKGNINEAFAGPMQGELFLFNAY 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY F H RR RKLLL KRE+ +L +A+ +DGMTLVP+ I+F +G+AKI L L Sbjct: 64 IPEYQSKMPFPHETRRPRKLLLHKREMAKLMSAITKDGMTLVPLDIHFGQRGIAKIQLGL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK +DKRE K+RDW+R K R++R+ Sbjct: 124 AKGKKLHDKREAIKERDWNRDKARLMRDK 152 >gi|33152254|ref|NP_873607.1| SsrA-binding protein [Haemophilus ducreyi 35000HP] gi|38372557|sp|Q7VM64|SSRP_HAEDU RecName: Full=SsrA-binding protein gi|33148476|gb|AAP95996.1| SsrA-binding protein, small major protein B [Haemophilus ducreyi 35000HP] Length = 160 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF + E Sbjct: 1 MAKKPKVPSNTIALNKRARHEYFIEDEIEAGLALQGWEVKSLRAGKANIGDSYVTFRHGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL++RE+ L+ V RDGMT+V + +Y+ Sbjct: 61 AFLFGATITPLNMASTHIVADPTRTRKLLLNQRELDSLFGKVNRDGMTVVALSLYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK +DKRE K R+W K RI++ Sbjct: 120 WAKVKIGLAKGKKLHDKREDIKDREWHVTKQRIMKN 155 >gi|292670374|ref|ZP_06603800.1| SsrA-binding protein [Selenomonas noxia ATCC 43541] gi|292647966|gb|EFF65938.1| SsrA-binding protein [Selenomonas noxia ATCC 43541] Length = 157 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N K+ +NRKAR++Y I ++EAG+ L GTEVKSLR + N+ DSYA +N E++L Sbjct: 3 KRNESVKIACENRKARHDYFIHETYEAGLELVGTEVKSLRAGRANLRDSYAYIKNGELFL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + ++ Y Q N+FNH P R R+LL+ K EI +L+ R GMTLVP+K+YF +G AKI Sbjct: 63 DHMHVSPYEQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLVPLKVYFK-RGRAKI 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK NYDKR+T + +D R+ + L+ Sbjct: 122 ELALASGKHNYDKRQTLRAKDAKREVEQALKAR 154 >gi|269837012|ref|YP_003319240.1| SsrA-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786275|gb|ACZ38418.1| SsrA-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 160 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 72/161 (44%), Positives = 100/161 (62%), Gaps = 4/161 (2%) Query: 1 MSLKSRG--NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ + +KVV+ NRKA ++YHI EAGI LTGTE+KS+R +VN+ D+YA Sbjct: 1 MAKVKAPAASGGEKVVTTNRKAFHDYHIEEELEAGIALTGTEIKSIRAGRVNLRDAYARI 60 Query: 59 ENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 EN E+WL +I Y A F H P R RKLL+ + E++ L V G TLVP+++ Sbjct: 61 ENGELWLIGMHISPYEHAGGYFQHDPDRPRKLLVHRHELNYLRNRVEAKGYTLVPLRLVL 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KGLAK+D+ +A+GKK+YDKR +RD R+ R LR+ Sbjct: 121 R-KGLAKVDIGVARGKKSYDKRAALAERDARREMERALRQR 160 >gi|187611501|sp|Q0VSU5|SSRP_ALCBS RecName: Full=SsrA-binding protein Length = 159 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M + P ++ NRKAR+ YH+ FEAG+VL G EVKSLR K N++++Y + Sbjct: 1 MGKANKKAKAPSATIAQNRKARHEYHLEEHFEAGLVLEGWEVKSLRAGKGNLTEAYVLLK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L + + N P R RKLLL +RE+ R++ V++DG T VP+ +Y+ Sbjct: 61 NGEAFLFGARFEPLNTASTHVNPDPTRTRKLLLHRRELGRVFGGVQKDGFTCVPVSLYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG AK D+ALA+GK+ +DKR TEK+RDW+RQK R+LR+ Sbjct: 121 -KGFAKCDIALAKGKQKFDKRATEKERDWNRQKQRVLRQR 159 >gi|167855514|ref|ZP_02478277.1| SsrA-binding protein [Haemophilus parasuis 29755] gi|167853380|gb|EDS24631.1| SsrA-binding protein [Haemophilus parasuis 29755] Length = 159 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L I + P R RKLLL+KRE+ LY V RDG T+V + +Y+ Sbjct: 61 AFLFGGTITPLNVASTHIVCDPTRTRKLLLNKRELDTLYGKVSRDGFTVVALSLYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + LA+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157 >gi|304398638|ref|ZP_07380510.1| SsrA-binding protein [Pantoea sp. aB] gi|304353849|gb|EFM18224.1| SsrA-binding protein [Pantoea sp. aB] Length = 160 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P V+ N++AR+ Y I +EAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATVAMNKRARHEYFIEEEYEAGLSLQGWEVKSLRAGKANISDSYILLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S + ++ P R+RKLLL +RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGSTFQPLAVASSHVVCDPTRSRKLLLKQRELDSLYGRVNREGYTIVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR+ K R+W K RI++ Sbjct: 120 NAWCKLKIGVARGKKEHDKRDDIKDREWKLDKARIMKN 157 >gi|292491011|ref|YP_003526450.1| SsrA-binding protein [Nitrosococcus halophilus Nc4] gi|291579606|gb|ADE14063.1| SsrA-binding protein [Nitrosococcus halophilus Nc4] Length = 160 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 S K + P ++ NRKAR++Y I +E G+ L G EVKSLR +V +S+SY + Sbjct: 4 SKKKQSGTPSNTIALNRKARHDYFIEERYEVGLALEGWEVKSLRAGRVQLSESYCLLKGG 63 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL ++I + P R RKLLL E+ +L AV R G LVP+ +Y+ + Sbjct: 64 EAWLFGAHITPLNTASTHIRPDPLRTRKLLLHSEELRKLIGAVERKGYALVPLALYWK-R 122 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++ALA+GK YDKR E++++W RQK R+L+ Sbjct: 123 GRVKLEIALAKGKHKYDKRAVEREKEWSRQKERLLKIR 160 >gi|183981547|ref|YP_001849838.1| ssRNA-binding protein SmpB [Mycobacterium marinum M] gi|183174873|gb|ACC39983.1| ssRNA-binding protein SmpB [Mycobacterium marinum M] Length = 168 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 7/164 (4%) Query: 1 MSLKSRGNP------PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDS 54 M+ +S+ KK+++ NRKAR+NY I+ FEAG+ L GTEVKSLR ++ D+ Sbjct: 1 MAAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLREGHASLVDA 60 Query: 55 YATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 +AT ++ E+WL N +IPEYL NH PRRNRKLLL +R+I L+ +R LVP+ Sbjct: 61 FATVDDGEVWLRNLHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLS 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +YF G K++LALA+GK +DKR+ +RD R+ R L Sbjct: 121 MYFLD-GKVKVELALARGKHAHDKRQDLARRDAQREVIRELGRR 163 >gi|172038180|ref|YP_001804681.1| SsrA-binding protein [Cyanothece sp. ATCC 51142] gi|171699634|gb|ACB52615.1| tmRNA-binding protein [Cyanothece sp. ATCC 51142] Length = 155 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 102/154 (66%), Gaps = 2/154 (1%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 N K+VSDNRKAR+ Y I+ ++EAGI L GTEVKS+R +VN++D YA +N E WL Sbjct: 3 NDNKAIKIVSDNRKARFLYEILETYEAGIELVGTEVKSIRAGRVNLADGYAFIKNGEAWL 62 Query: 66 TNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 TN +I Y + FNH P+R RKLLL ++EI +L + + G+TLVP+K+YF K Sbjct: 63 TNVHISPYQGSSQYFNHDPKRTRKLLLHRKEISQLIGKIEQKGLTLVPLKLYFKGS-WVK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L L +GKK +DKRET K+R R+ R ++ + Sbjct: 122 VSLGLGRGKKLHDKRETVKRRQDQREMSRAMKRY 155 >gi|148272491|ref|YP_001222052.1| SsrA-binding protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|170782438|ref|YP_001710771.1| SsrA-binding protein [Clavibacter michiganensis subsp. sepedonicus] gi|166222379|sp|A5CQK2|SSRP_CLAM3 RecName: Full=SsrA-binding protein gi|189046822|sp|B0RF94|SSRP_CLAMS RecName: Full=SsrA-binding protein gi|147830421|emb|CAN01356.1| tmRNA (SsrA)-binding protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|169157007|emb|CAQ02179.1| ssra-binding protein [Clavibacter michiganensis subsp. sepedonicus] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 71/149 (47%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +KVV+ NRKAR++Y I ++EAG+VLTGTEVKSLR + ++ D YA + E WL + Sbjct: 6 GEKVVATNRKARHDYTIESTYEAGLVLTGTEVKSLRQGRASLVDGYAFVDAGEAWLDAVH 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY Q NH RR RKLLL K +I ++++ V+ G T+VP+++YF G AK++LA+ Sbjct: 66 IPEYNQGTWNNHPVRRKRKLLLHKEQILKIHSKVKEGGYTVVPLQLYFVD-GRAKVELAI 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK YDKR+T ++R R+ R + H Sbjct: 125 AKGKKEYDKRQTLRERQDKREADRAMSSH 153 >gi|295836898|ref|ZP_06823831.1| SsrA-binding protein [Streptomyces sp. SPB74] gi|295826260|gb|EDY46068.2| SsrA-binding protein [Streptomyces sp. SPB74] Length = 160 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYTIIDTYEAGMVLTGTEVKSLRQGRASLVDGFVQIDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL EI +L A + G T++P+ +YF Sbjct: 57 GEAWLHNVHVPEYSQGTWTNHSARRRRKLLLHADEIAKLDAKSQETGHTIIPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK ++ALA+GK+ YDKR++ +++ R+ HR + Sbjct: 116 GRAKCEIALAKGKREYDKRQSLREKQDTREAHRAM 150 >gi|254412801|ref|ZP_05026574.1| SsrA-binding protein [Microcoleus chthonoplastes PCC 7420] gi|196180536|gb|EDX75527.1| SsrA-binding protein [Microcoleus chthonoplastes PCC 7420] Length = 155 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 108/159 (67%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS +S+ KVV+DNR+AR+ Y I+ ++EAGI L GTEVKS+R S+VN+ D YA N Sbjct: 1 MSDQSK---GFKVVADNRQARFRYEILETYEAGIELKGTEVKSIRESRVNLRDGYALVRN 57 Query: 61 DEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL N ++ Y ++ FNH P R RKLLL K+EI +L V + G+TLVP+K+Y Sbjct: 58 GEAWLLNVHVSPYQSSSLYFNHDPVRTRKLLLHKQEISKLVGKVEQQGLTLVPLKMYLK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GL K+ L L +GKK +DKRET K+R +R+ R+++ + Sbjct: 117 RGLVKVSLGLCKGKKLHDKRETIKRRQDEREMARVVQRY 155 >gi|145299836|ref|YP_001142677.1| SsrA-binding protein [Aeromonas salmonicida subsp. salmonicida A449] gi|187611494|sp|A4SPV7|SSRP_AERS4 RecName: Full=SsrA-binding protein gi|142852608|gb|ABO90929.1| SsrA-binding protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 162 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 3/160 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS K S+ ++ NR AR+ Y I EAG+ L G EVKSLR K NIS++Y F Sbjct: 1 MSKKNSKNKAGSSTIALNRTARHEYFIEERVEAGLSLQGWEVKSLRAGKANISEAYVIFM 60 Query: 60 NDEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 E +L S ++P ++ P R RKLLLS+ E+ +L + R G T+VP+ +Y+ Sbjct: 61 QGEAFLFGSTFLPLNAASSHVVCDPTRTRKLLLSRHELDKLESLTARQGYTIVPLALYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ L +GKK +DKRE K R+WDR+K RI++ Sbjct: 121 E-CWVKVEIGLVKGKKEHDKREDTKAREWDREKARIMKNK 159 >gi|61216473|sp|Q65SE8|SSRP_MANSM RecName: Full=SsrA-binding protein Length = 160 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F + E Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEEELEAGLSLQGWEVKSMRAGKANISDSYIIFRDGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL++RE+ L+ RDG T+V + +Y+ Sbjct: 63 YLFGATIQPLTVASTHVVCDPTRTRKLLLNQRELASLFGKANRDGYTIVALSLYWK-NAW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI + LA+GK+ +DKR K R+W QK RI++ N Sbjct: 122 AKIKIGLAKGKQQHDKRNDIKDREWKMQKERIMKNAN 158 >gi|289209216|ref|YP_003461282.1| SsrA-binding protein [Thioalkalivibrio sp. K90mix] gi|288944847|gb|ADC72546.1| SsrA-binding protein [Thioalkalivibrio sp. K90mix] Length = 159 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M + + ++ NRKAR+++ I EAG+ L G EVKS+R + +S++Y Sbjct: 1 MGKPNKKKDAGSNTIALNRKARHDFFIEDRLEAGLELQGWEVKSMRAGRAQLSEAYVLLR 60 Query: 60 NDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 E +L ++I + N P R RKLLL + EI+RL AV R G TLVPM +Y+ Sbjct: 61 KGEAFLFGAHITPLPTASTHINPDPSRTRKLLLHRSEINRLIGAVERKGYTLVPMALYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 +G AK+++ LA+GKK+YDKR +K +DW R++ RIL+ Sbjct: 121 -RGRAKLEIGLAKGKKDYDKRAAKKDKDWQRERARILK 157 >gi|83593199|ref|YP_426951.1| ssrA-binding protein [Rhodospirillum rubrum ATCC 11170] gi|123526510|sp|Q2RT81|SSRP_RHORT RecName: Full=SsrA-binding protein gi|83576113|gb|ABC22664.1| SsrA-binding protein [Rhodospirillum rubrum ATCC 11170] Length = 160 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 76/159 (47%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ V++NR+AR++Y I + EAG++L GTEVKSLR + NI+DSYA ++ Sbjct: 1 MARAGNSLISHGRVAENRRARHDYSIEETIEAGLILVGTEVKSLRTGRANIADSYAGPKS 60 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L N+YIP++ QA F H PR+ RKLL+ +RE RL +A+ +DGMTLVP+ +YFN Sbjct: 61 GELYLYNAYIPDWTQAVKAFAHEPRQPRKLLVHRREARRLISAINKDGMTLVPLYLYFND 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AK+ L LA+G+K +DKR+ K+R+W+R K R+LR+ Sbjct: 121 RGFAKVQLGLAKGRKAHDKRQAIKEREWNRDKARVLRDK 159 >gi|307155334|ref|YP_003890718.1| SsrA-binding protein [Cyanothece sp. PCC 7822] gi|306985562|gb|ADN17443.1| SsrA-binding protein [Cyanothece sp. PCC 7822] Length = 155 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S N K++SDNR+AR+ Y I+ ++EAGI LTGTEVKS+R ++N+ D YA N E W Sbjct: 2 SNQNGKTKLISDNRQARFLYEILETYEAGIELTGTEVKSIRAGRINLKDGYALIRNGEAW 61 Query: 65 LTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I Y FNH PRR RKLLL ++EI++L V + G+TLVP+K+YF Sbjct: 62 LINVHISPYEASGQYFNHDPRRTRKLLLHRKEINKLIGQVEQKGLTLVPLKMYFKDS-WI 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ + L QGKK +DKRET K+R +R+ R ++ + Sbjct: 121 KVSIGLGQGKKLHDKRETLKRRQDEREMQRAMKRY 155 >gi|56964766|ref|YP_176497.1| SsrA-binding protein [Bacillus clausii KSM-K16] gi|56911009|dbj|BAD65536.1| ssrA RNA (tmRNA)-binding protein [Bacillus clausii KSM-K16] Length = 161 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y I +FEAGIVLTGTE+KS+R K+N+ DS+A +N E +L N++I Sbjct: 13 KVVAQNKKARHDYFIEETFEAGIVLTGTEIKSIRAGKMNLKDSFARIKNGEAFLYNAHIS 72 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY Q NR+NH P R RKLLL K++I+ L ++ G ++VP+K+Y G AK+ + LA+ Sbjct: 73 EYEQGNRYNHEPTRPRKLLLHKKQINTLIGQTQQKGYSIVPLKVYIK-NGFAKVLIGLAK 131 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKNYDKRET +++D R+ R ++E Sbjct: 132 GKKNYDKRETLRRKDAKREVERAIKER 158 >gi|52425560|ref|YP_088697.1| SsrA-binding protein [Mannheimia succiniciproducens MBEL55E] gi|52307612|gb|AAU38112.1| SmpB protein [Mannheimia succiniciproducens MBEL55E] Length = 163 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F + E Sbjct: 6 KKKVKPGSNTIALNKRARHDYFIEEELEAGLSLQGWEVKSMRAGKANISDSYIIFRDGEA 65 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL++RE+ L+ RDG T+V + +Y+ Sbjct: 66 YLFGATIQPLTVASTHVVCDPTRTRKLLLNQRELASLFGKANRDGYTIVALSLYWK-NAW 124 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI + LA+GK+ +DKR K R+W QK RI++ N Sbjct: 125 AKIKIGLAKGKQQHDKRNDIKDREWKMQKERIMKNAN 161 >gi|255019962|ref|ZP_05292036.1| tmRNA-binding protein SmpB [Acidithiobacillus caldus ATCC 51756] gi|209574074|gb|ACI62975.1| SsrA tmRNA-binding protein SmpB [Acidithiobacillus caldus] gi|254970621|gb|EET28109.1| tmRNA-binding protein SmpB [Acidithiobacillus caldus ATCC 51756] Length = 153 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NR+A++ Y I FEAGI L G EVKSLR ++N+ DSY + E+WL ++I Sbjct: 4 TIALNREAKHEYFIEERFEAGIALEGWEVKSLRAGRLNLKDSYVVVKQGELWLLGAHISP 63 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + + P R RKLL+ + EI+RL A+ R G T+VP+ +Y+ A G AK+++AL + Sbjct: 64 LTTASTHIHPDPTRTRKLLMHRLEINRLIGAIERKGYTVVPLAMYWKA-GRAKVEIALVK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GK+ +DKR + K+R+W R K RIL+ Sbjct: 123 GKQAHDKRASIKEREWQRDKARILK 147 >gi|218439012|ref|YP_002377341.1| SsrA-binding protein [Cyanothece sp. PCC 7424] gi|226734250|sp|B7KF17|SSRP_CYAP7 RecName: Full=SsrA-binding protein gi|218171740|gb|ACK70473.1| SsrA-binding protein [Cyanothece sp. PCC 7424] Length = 155 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S N K+++DNR+AR+ Y I+ ++EAGI LTGTEVKS+R ++N+ D YA N E W Sbjct: 2 SNQNGKTKLITDNRQARFLYEILETYEAGIELTGTEVKSIRAGRINLKDGYALIRNGEAW 61 Query: 65 LTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I Y FNH PRR RKLLL ++EI++L V + G+TLVP+K+YF Sbjct: 62 LINVHISPYEASGQYFNHDPRRTRKLLLHRKEINKLIGQVEQKGLTLVPLKMYFKDS-WV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + LAQGKK +DKRET K+R +R R ++ Sbjct: 121 KVSIGLAQGKKLHDKRETLKRRQDERDMQRAMKR 154 >gi|159042703|ref|YP_001531497.1| SsrA-binding protein [Dinoroseobacter shibae DFL 12] gi|187611496|sp|A8LKQ3|SSRP_DINSH RecName: Full=SsrA-binding protein gi|157910463|gb|ABV91896.1| SsrA-binding protein [Dinoroseobacter shibae DFL 12] Length = 160 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 81/159 (50%), Positives = 113/159 (71%), Gaps = 1/159 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K+ KV+++NR+AR Y I E GIVL G+EVKSLR NI++SYAT + Sbjct: 1 MAKPKTPEEKNYKVIAENRRARREYAIEEDLEVGIVLEGSEVKSLREGGSNIAESYATVD 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E+WL NSYI Y QA + H RR RKLL+S+RE+ RL+ A +R GMTLVP+ +YFN Sbjct: 61 DGELWLVNSYIAPYAQAKTWKHEERRRRKLLVSRRELSRLWNATQRQGMTLVPLVMYFNH 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GL K+ + +A+GKK DKR+T+ KRDW+RQK R+L+++ Sbjct: 121 RGLVKLKIGVAKGKKLADKRQTDAKRDWNRQKQRLLKQN 159 >gi|46201890|ref|ZP_00054157.2| COG0691: tmRNA-binding protein [Magnetospirillum magnetotacticum MS-1] Length = 153 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 79/149 (53%), Positives = 107/149 (71%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P V + NR+AR+ Y IV EAGI+L GTEVKSLRV K NI++++A E++L N+Y Sbjct: 4 PGHVAAQNRRARHEYFIVSEVEAGIMLVGTEVKSLRVGKGNINEAFAGPMQGELYLFNAY 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY F H RR RKLLL KRE+ +L +A+ +DGMTLVP+ I+F +G+AK+ L L Sbjct: 64 IPEYQSKMPFPHETRRPRKLLLHKREMAKLMSAIAKDGMTLVPLDIHFAQRGIAKVQLGL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK +DKRE K+RDW+R K R++R+ Sbjct: 124 AKGKKLHDKREAIKERDWNRDKARLMRDK 152 >gi|192358965|ref|YP_001983816.1| SsrA-binding protein [Cellvibrio japonicus Ueda107] gi|226734248|sp|B3PF48|SSRP_CELJU RecName: Full=SsrA-binding protein gi|190685130|gb|ACE82808.1| SsrA-binding protein [Cellvibrio japonicus Ueda107] Length = 159 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 106/158 (67%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K++ ++ N+KA+++Y + FEAG+ LTG EVKSLR K NI+D Y F+N Sbjct: 1 MAKKNQ-KSGSNTIALNKKAKFDYELHERFEAGLALTGWEVKSLRAGKGNITDCYVIFKN 59 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E WL I P + F P RNRKLLL++REI+RL AV + G T+VP+ +Y+ A Sbjct: 60 NEAWLQACQIQPLLSASTHFVTDPFRNRKLLLNRREINRLQEAVEQKGYTVVPIALYWKA 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + K ++A+A+GK+ +DKR+TEK+RDW+R+K R+ + Sbjct: 120 H-MVKCEIAIAKGKQLHDKRQTEKERDWEREKQRLFQR 156 >gi|152978554|ref|YP_001344183.1| SsrA-binding protein [Actinobacillus succinogenes 130Z] gi|171704243|sp|A6VMQ1|SSRP_ACTSZ RecName: Full=SsrA-binding protein gi|150840277|gb|ABR74248.1| SsrA-binding protein [Actinobacillus succinogenes 130Z] Length = 160 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 91/158 (57%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F N Sbjct: 1 MAKK-KNKAGDNTIALNKRARHDYFIEEEIEAGLSLQGWEVKSMRAGKANISDSYVIFNN 59 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL++RE+ L+ RDG TLV + +Y+ Sbjct: 60 GEAFLFGATIQPLSVASTHVVCDPTRTRKLLLNERELASLFGKANRDGYTLVALSLYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK +DKRE K R+W QK RI++ Sbjct: 119 NAWAKLKIGLAKGKKQHDKREDIKDREWKVQKDRIMKN 156 >gi|184200581|ref|YP_001854788.1| SsrA-binding protein [Kocuria rhizophila DC2201] gi|183580811|dbj|BAG29282.1| SsrA-binding protein [Kocuria rhizophila DC2201] Length = 162 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 111/160 (69%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ + +++V++N+KAR++Y I+ ++EAG+ L GTEVKSLR+ + ++ D++ F+N Sbjct: 1 MAKKN-ADDGRQIVANNKKARHDYAILDTYEAGLALMGTEVKSLRMGRASLVDAFCQFDN 59 Query: 61 D-EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL +++IPEYLQ + NH RR RKLLL + E+ ++ R G T++P+ +YF Sbjct: 60 RGELWLEHAHIPEYLQGSWTNHSARRRRKLLLHRAELDKIAGKTREAGYTIIPLSLYFVD 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++A+A+GK+ YDKR+T +++ +R+ R +R N Sbjct: 120 GKRVKVEIAVARGKREYDKRQTLREKQDNREAQRAMRYRN 159 >gi|114763731|ref|ZP_01443125.1| SsrA-binding protein [Pelagibaca bermudensis HTCC2601] gi|114543732|gb|EAU46745.1| SsrA-binding protein [Roseovarius sp. HTCC2601] Length = 156 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 84/157 (53%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P KV+++NR+AR++Y I E GIVLTG+EVKSLR + NI++SYA E+ Sbjct: 1 MA-KPKTDPNYKVIAENRRARFDYAIEDDLEVGIVLTGSEVKSLRENTSNIAESYAAVED 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y F H RR RKLL+SK+E+ RL+ +R GMT+VP+ +YFN K Sbjct: 60 GELWLVNSYIAPYE-RAMFGHEERRRRKLLVSKKELARLWNETQRKGMTIVPLVLYFNHK 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G+AK+ + +A+GKKN+DKRETE KRDW+RQK R+L++ Sbjct: 119 GIAKMKVGIAKGKKNHDKRETEAKRDWNRQKQRLLKQ 155 >gi|126664864|ref|ZP_01735848.1| SsrA-binding protein [Marinobacter sp. ELB17] gi|126631190|gb|EBA01804.1| SsrA-binding protein [Marinobacter sp. ELB17] Length = 190 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 67/160 (41%), Positives = 97/160 (60%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K G ++ N+KA++ YHI FEAG+ L G EVKS+R K ++DSY + Sbjct: 32 MSKKKPGTSSS-TIALNKKAKHEYHIDDRFEAGLSLLGWEVKSMRAGKTQLTDSYVLLKG 90 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++I + P R RKLLL +EI ++ +V ++G T +P+ +Y+ Sbjct: 91 GEAWLLGTHITPLTTASTHVIADPTRTRKLLLHAKEIAKIVDSVGQEGRTCIPLALYWK- 149 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K K ++AL +GKK +DKR TEK+RDW+RQK R+LRE N Sbjct: 150 KNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRVLREAN 189 >gi|322834147|ref|YP_004214174.1| SsrA-binding protein [Rahnella sp. Y9602] gi|321169348|gb|ADW75047.1| SsrA-binding protein [Rahnella sp. Y9602] Length = 160 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKS+R K NI+DSY TF + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYIIEDEFEAGLALQGWEVKSMRAGKANITDSYVTFRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L+ V RDG T+V + +Y+ Sbjct: 61 GEAFLFGATIQPLNVASTHIVCDPTRTRKLLLNKRELETLFGKVSRDGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +K+ + LA+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWSKVKIGLAKGKKEHDKRDDIKDREWKVDKARIMKHAN 159 >gi|304316668|ref|YP_003851813.1| SsrA-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778170|gb|ADL68729.1| SsrA-binding protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 155 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 75/152 (49%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + KV++ N+KA ++Y I +EAGIVL GTEVKS+R+ KVN+ DS+A EN+E++L Sbjct: 2 TSENIKVLAQNKKASHDYFIDEVYEAGIVLFGTEVKSVRMGKVNLKDSFARIENNEVFLY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + N FN P R RKLLL++REI++L V + G TLVP+++Y GL KI+ Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRREINKLTGYVTQKGYTLVPLRVYLK-HGLVKIE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+A+GKK YDKRE KRD R+ R +E Sbjct: 121 LAVARGKKLYDKREDIAKRDAKREIERHFKEK 152 >gi|254462276|ref|ZP_05075692.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2083] gi|206678865|gb|EDZ43352.1| SsrA-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 158 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 78/157 (49%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + NP KV+++NR+ARY+Y I E GI+L G+EVKSLRV+ N+++SYA ++ Sbjct: 1 MA-KPKDNPNYKVIAENRRARYDYAIQDDIECGIILQGSEVKSLRVNSANVAESYAEVKD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y A + H RR RKLL SK+E+ +++ +R GMTLVP+ +YFN K Sbjct: 60 GELWLVNSYIAPYEAAKTWGHEERRRRKLLASKKELAGMWSDTQRKGMTLVPLVLYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ + +A+GK+N+DKR ++ KRDW RQK R+LR Sbjct: 120 GFVKLKIGIAKGKQNHDKRASDAKRDWGRQKQRLLRH 156 >gi|16331042|ref|NP_441770.1| SsrA-binding protein [Synechocystis sp. PCC 6803] gi|2498928|sp|P74355|SSRP_SYNY3 RecName: Full=SsrA-binding protein gi|1653537|dbj|BAA18450.1| small protein [Synechocystis sp. PCC 6803] Length = 154 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ KVVSDNR+AR+ Y I+ ++EAGI L GTEVKS+R KVN+ D +A + E+W Sbjct: 2 AKEKERIKVVSDNRQARFLYEILETYEAGIELQGTEVKSIRAGKVNLRDGFALLRDGEVW 61 Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I Y +++ FNH PRR R+LL+ EI +L V + G+TLVP+K+YF Sbjct: 62 LMNVHISPYDKSSLFFNHDPRRTRRLLMHNWEIRKLIGQVEQKGLTLVPLKMYFKGS-WV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ L L +GKK +DKRET K+R DR R ++ Sbjct: 121 KVALGLGKGKKLHDKRETLKRRQDDRDMARAMKR 154 >gi|240168640|ref|ZP_04747299.1| SsrA-binding protein [Mycobacterium kansasii ATCC 12478] Length = 168 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 99/157 (63%), Gaps = 1/157 (0%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 + + +K+++ NRKAR+NY I+ FEAG+ L GTEVKSLR ++ D++AT ++ Sbjct: 8 AKAAGKKIGRKIIATNRKARHNYSIIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDG 67 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 EIWL N +IPEY + NH PRRNRKLLL +R+I L +R LVP+ +YF G Sbjct: 68 EIWLRNLHIPEYQHGSWTNHEPRRNRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTE-G 126 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GK +DKR+ +RD R+ R L Sbjct: 127 KVKVEIALARGKHAHDKRQDLARRDAQREVIRELGRR 163 >gi|219870882|ref|YP_002475257.1| SsrA-binding protein [Haemophilus parasuis SH0165] gi|254778363|sp|B8F4Q7|SSRP_HAEPS RecName: Full=SsrA-binding protein gi|219691086|gb|ACL32309.1| SsrA-binding protein [Haemophilus parasuis SH0165] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 88/158 (55%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L I + P R RKLLL+KRE+ LY V RDG T+V + +Y+ Sbjct: 61 AFLFGGTITPLNVASTHIVCDPTRTRKLLLNKRELDTLYGKVSRDGFTVVALSLYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + LA+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157 >gi|290476151|ref|YP_003469051.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus bovienii SS-2004] gi|289175484|emb|CBJ82287.1| trans-translation protein, binds tmRNA and tRNA [Xenorhabdus bovienii SS-2004] Length = 160 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 92/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEEEFEAGLSLQGWEVKSLRAGKANISESYVLLRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + +L + I ++ P R+RKLLL+KRE+ LY V R+G T+V + +Y+ Sbjct: 61 GDAYLFGATITPLNVASSHIVCDPTRSRKLLLNKRELDSLYGRVNREGYTIVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWSKVKIGVAKGKKAHDKRSDIKEREWKVDKARIMKN 157 >gi|118443378|ref|YP_877500.1| SsrA-binding protein [Clostridium novyi NT] gi|166222383|sp|A0PYP8|SSRP_CLONN RecName: Full=SsrA-binding protein gi|118133834|gb|ABK60878.1| SsrA-binding protein [Clostridium novyi NT] Length = 157 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + N ++ NRKA ++Y I +FEAGI L GTEVKS+R K N+ DSYA+ N Sbjct: 1 MGKKDKKN---NTLAQNRKAYHDYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIRN 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N ++ Y Q N FN P R RKLLL K +I+ L + G TL+P+ +Y Sbjct: 58 GEVFVCNMHVSPYEQGNIFNRDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLK-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKKNYDKR+ + R R ++E Sbjct: 117 GRVKVALGVAKGKKNYDKRDAIAAKAAKRDIDRQMKER 154 >gi|51595479|ref|YP_069670.1| SsrA-binding protein [Yersinia pseudotuberculosis IP 32953] gi|149366899|ref|ZP_01888933.1| SsrA-binding protein (small protein B) [Yersinia pestis CA88-4125] gi|153948403|ref|YP_001401856.1| SsrA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|165924594|ref|ZP_02220426.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165938351|ref|ZP_02226909.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|166011588|ref|ZP_02232486.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166211539|ref|ZP_02237574.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|167419901|ref|ZP_02311654.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|218928269|ref|YP_002346144.1| SsrA-binding protein [Yersinia pestis CO92] gi|229841036|ref|ZP_04461195.1| trans-translation protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843140|ref|ZP_04463286.1| trans-translation protein [Yersinia pestis biovar Orientalis str. India 195] gi|229893978|ref|ZP_04509164.1| trans-translation protein [Yersinia pestis Pestoides A] gi|229903498|ref|ZP_04518611.1| trans-translation protein [Yersinia pestis Nepal516] gi|294503110|ref|YP_003567172.1| SsrA-binding protein [Yersinia pestis Z176003] gi|22096165|sp|Q8ZH14|SSRP_YERPE RecName: Full=SsrA-binding protein gi|61216481|sp|Q66DB4|SSRP_YERPS RecName: Full=SsrA-binding protein gi|166979672|sp|A7FKS8|SSRP_YERP3 RecName: Full=SsrA-binding protein gi|187631668|sp|Q1CAH5|SSRP_YERPA RecName: Full=SsrA-binding protein gi|187631669|sp|Q1CFK6|SSRP_YERPN RecName: Full=SsrA-binding protein gi|187631670|sp|A4TNV2|SSRP_YERPP RecName: Full=SsrA-binding protein gi|51588761|emb|CAH20375.1| SsrA-binding protein (small protein B) [Yersinia pseudotuberculosis IP 32953] gi|115346880|emb|CAL19767.1| SsrA-binding protein (small protein B) [Yersinia pestis CO92] gi|149291273|gb|EDM41348.1| SsrA-binding protein (small protein B) [Yersinia pestis CA88-4125] gi|152959898|gb|ABS47359.1| SsrA-binding protein [Yersinia pseudotuberculosis IP 31758] gi|165913729|gb|EDR32348.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. IP275] gi|165923654|gb|EDR40786.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. F1991016] gi|165989536|gb|EDR41837.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. E1979001] gi|166207310|gb|EDR51790.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. B42003004] gi|166962642|gb|EDR58663.1| SsrA-binding protein [Yersinia pestis biovar Orientalis str. MG05-1020] gi|229679268|gb|EEO75371.1| trans-translation protein [Yersinia pestis Nepal516] gi|229689487|gb|EEO81548.1| trans-translation protein [Yersinia pestis biovar Orientalis str. India 195] gi|229697402|gb|EEO87449.1| trans-translation protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703863|gb|EEO90876.1| trans-translation protein [Yersinia pestis Pestoides A] gi|262365300|gb|ACY61857.1| SsrA-binding protein [Yersinia pestis D182038] gi|294353569|gb|ADE63910.1| SsrA-binding protein [Yersinia pestis Z176003] gi|320014240|gb|ADV97811.1| trans-translation protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 160 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+ Sbjct: 61 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK+ DKR+ + R+W K RI++ N Sbjct: 120 NAWVKVKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 159 >gi|261820277|ref|YP_003258383.1| SsrA-binding protein [Pectobacterium wasabiae WPP163] gi|261604290|gb|ACX86776.1| SsrA-binding protein [Pectobacterium wasabiae WPP163] Length = 160 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K N+SDSY TF Sbjct: 1 MTKKKAYKPGSATIAQNKRARHEYSIEEEFEAGLALQGWEVKSLRAGKANLSDSYVTFMK 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R RKLLL+KRE+ L+ V RDG T+V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPIRTRKLLLNKRELDSLFGRVSRDGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +K+ + +A+GKK++DKR+ K+R+W K RI++ N Sbjct: 120 NAWSKVKIGVAKGKKDHDKRDDIKEREWKVDKARIMKNAN 159 >gi|158317534|ref|YP_001510042.1| SsrA-binding protein [Frankia sp. EAN1pec] gi|238686847|sp|A8L8M0|SSRP_FRASN RecName: Full=SsrA-binding protein gi|158112939|gb|ABW15136.1| SsrA-binding protein [Frankia sp. EAN1pec] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K+++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL Sbjct: 3 KETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY + NH PRR RKLLL + EI +L R G+T+VP+ +YF G AK++ Sbjct: 63 NVHIPEYTEGTWTNHAPRRRRKLLLHRAEIEKLIGKTREGGLTVVPLSLYFKD-GRAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +ALA+G+KNYDKR +RD R+ RI+ Sbjct: 122 IALARGRKNYDKRHALAERDAAREMSRIM 150 >gi|288923240|ref|ZP_06417380.1| SsrA-binding protein [Frankia sp. EUN1f] gi|288345414|gb|EFC79803.1| SsrA-binding protein [Frankia sp. EUN1f] Length = 158 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K+++ N++AR++Y I+ ++EAG+VL GTEVK+LR + ++ D +A + EIWL Sbjct: 3 KETGRKLIAQNKRARHDYDILDTYEAGLVLMGTEVKALRAGRASLVDGFAQIADGEIWLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY + NH PRR RKLLL + EI +L + G+TLVP+ +YF G AK++ Sbjct: 63 NVHIPEYTEGTWTNHAPRRRRKLLLHRAEIEKLIGKTQEGGLTLVPLSLYFKD-GRAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +ALA+G+K YDKR +RD R+ RI+ Sbjct: 122 VALARGRKTYDKRHALAERDAAREMSRIM 150 >gi|92115216|ref|YP_575144.1| SsrA-binding protein [Chromohalobacter salexigens DSM 3043] gi|122419116|sp|Q1QSW3|SSRP_CHRSD RecName: Full=SsrA-binding protein gi|91798306|gb|ABE60445.1| SsrA-binding protein [Chromohalobacter salexigens DSM 3043] Length = 157 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +GN ++ N+KAR+ YHI +FEAG+ L G EVKSLR K ++D+Y +N Sbjct: 1 MAKK-KGNLGSSTIAQNKKARFEYHIDETFEAGLSLAGWEVKSLRAGKAQLTDTYILIKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL ++EI ++++ + G T VP+K+Y+ Sbjct: 60 GEAWLLGSHITPLNTVSTHVVADPSRTRKLLLHRKEIAKIFSRTQDKGHTCVPLKLYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K L K +LAL +GKK +DKR TEK RDW+R+K RI+R H Sbjct: 119 KNLVKCELALVRGKKLHDKRATEKARDWNREKARIMRAH 157 >gi|323526468|ref|YP_004228621.1| SsrA-binding protein [Burkholderia sp. CCGE1001] gi|323383470|gb|ADX55561.1| SsrA-binding protein [Burkholderia sp. CCGE1001] Length = 148 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK+LR + I + Y +N E++L ++I Sbjct: 3 IIDNRKAFFDYSIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNGELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKLHDKRETEKKRDWEREKARLMR 145 >gi|170077965|ref|YP_001734603.1| SsrA-binding protein [Synechococcus sp. PCC 7002] gi|169885634|gb|ACA99347.1| SsrA-binding protein [Synechococcus sp. PCC 7002] Length = 155 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 98/153 (64%), Gaps = 2/153 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 P K++SDNRKAR+ Y I+ + EAGI L GTEVKS+R KVN+ D Y N+E WL Sbjct: 4 TKKPIKIISDNRKARFQYEILETLEAGIQLQGTEVKSVRAGKVNLGDGYVLIRNNEAWLL 63 Query: 67 NSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y FNH P+R+RKLLL ++EI RL + + G+TL+P+K+Y L K+ Sbjct: 64 NVHISPYTASGQYFNHEPKRDRKLLLHRKEIRRLIGQLEQKGLTLIPLKMYLKGS-LVKV 122 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L L +GKK +DKRET K+R R+ R L+ + Sbjct: 123 SLGLGRGKKLHDKRETIKRRQDSREMARALKRY 155 >gi|158334110|ref|YP_001515282.1| SsrA-binding protein [Acaryochloris marina MBIC11017] gi|187611489|sp|B0BZP2|SSRP_ACAM1 RecName: Full=SsrA-binding protein gi|158304351|gb|ABW25968.1| SsrA-binding protein [Acaryochloris marina MBIC11017] Length = 154 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 99/151 (65%), Gaps = 2/151 (1%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + KV+SDNR+AR+ Y I+ FEAG+ LTGTEVKS+R KVN+ D +A N+E +L N Sbjct: 2 SESYKVISDNRQARFQYEILEVFEAGLALTGTEVKSIRAGKVNLRDGFAQIRNEEAFLLN 61 Query: 68 SYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 ++ + A FNH PRR RKLL+ ++EI +L + G+TLVP+K+Y +G K+ Sbjct: 62 VHVSPHTNAGQFFNHDPRRTRKLLMHRQEIRKLIGKTEQKGLTLVPLKLYL-QRGWIKVT 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + LA+GKK +DKRE+ KKR R R L+ Sbjct: 121 IGLARGKKLHDKRESIKKRQDKRDMERALKR 151 >gi|302551789|ref|ZP_07304131.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302469407|gb|EFL32500.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 159 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + +++D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLADGFIQMDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRAEIDKLESKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRRETERAI 150 >gi|228910936|ref|ZP_04074745.1| hypothetical protein bthur0013_50780 [Bacillus thuringiensis IBL 200] gi|228848887|gb|EEM93732.1| hypothetical protein bthur0013_50780 [Bacillus thuringiensis IBL 200] Length = 190 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 42 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 101 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 102 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 160 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R+ R+ Sbjct: 161 GKKQYDKRHDLKEKEAKREIARVFRDR 187 >gi|228955357|ref|ZP_04117363.1| hypothetical protein bthur0006_47130 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804304|gb|EEM50917.1| hypothetical protein bthur0006_47130 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 190 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 42 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 101 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 102 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 160 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R R+ Sbjct: 161 GKKQYDKRHDLKEKEAKREIARAFRDR 187 >gi|269215849|ref|ZP_06159703.1| SsrA-binding protein [Slackia exigua ATCC 700122] gi|269130799|gb|EEZ61875.1| SsrA-binding protein [Slackia exigua ATCC 700122] Length = 161 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 95/149 (63%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK ++ NR+A ++Y I+ +FEAGIVL+GTEV SLR + ++D++A + E WL +I Sbjct: 12 KKPIAKNRRAFHDYEIIETFEAGIVLSGTEVCSLRENNCQLTDTFALIRHGEAWLHGLHI 71 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 P Y N N P R RKLLL +R+I L R GM +VP+ +YF+A G K+++A+A Sbjct: 72 PPYSHGNIANREPDRVRKLLLHRRQIRYLEQKTRDAGMAIVPISVYFDANGRVKVEIAVA 131 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKR +RD R+ R ++ + Sbjct: 132 RGKKLYDKRAAMAERDSKREIERAMKVRS 160 >gi|125975230|ref|YP_001039140.1| SsrA-binding protein [Clostridium thermocellum ATCC 27405] gi|256003108|ref|ZP_05428100.1| SsrA-binding protein [Clostridium thermocellum DSM 2360] gi|281419204|ref|ZP_06250220.1| SsrA-binding protein [Clostridium thermocellum JW20] gi|187611478|sp|A3DJ18|SSRP_CLOTH RecName: Full=SsrA-binding protein gi|125715455|gb|ABN53947.1| SsrA-binding protein [Clostridium thermocellum ATCC 27405] gi|255992799|gb|EEU02889.1| SsrA-binding protein [Clostridium thermocellum DSM 2360] gi|281407070|gb|EFB37332.1| SsrA-binding protein [Clostridium thermocellum JW20] gi|316939394|gb|ADU73428.1| SsrA-binding protein [Clostridium thermocellum DSM 1313] Length = 154 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 109/158 (68%), Gaps = 6/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + +VV+ NRKAR++Y I ++ EAGIVL+GTEVKS+R KV++ DSYA +N Sbjct: 1 MAKEEK-----RVVAQNRKARHDYFIEQTIEAGIVLSGTEVKSIRAGKVSLKDSYANVKN 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y Q N FN P R+RKLLL + EI++L +++ GMTLVP+++YF Sbjct: 56 GEVFIYGMHISPYEQGNIFNKDPLRDRKLLLHRAEINKLIGYIQQKGMTLVPLEVYFK-N 114 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G KI+L +A+GKK YDKRE KRD R+ R L+E+ Sbjct: 115 GKVKIELGIAKGKKLYDKREDIAKRDALREIDRRLKEN 152 >gi|325001485|ref|ZP_08122597.1| SsrA-binding protein [Pseudonocardia sp. P1] Length = 161 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KV++ NR+AR++Y I+ FEAG+ L GTEVKSLR+ + +++D++AT ++ EI+L Sbjct: 2 KEQGRKVIAQNRRARHDYSILDVFEAGVALKGTEVKSLRLGRASMADAFATIDDGEIFLR 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY++ + NH PRR RKLLL + EI RL R G+TLVP+ +YFN G K + Sbjct: 62 GLHIPEYVRGSWTNHEPRRTRKLLLHREEIDRLMGKTREGGLTLVPLSLYFND-GKVKCE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +ALA+GKK+YDKR K+D R+ R + Sbjct: 121 IALARGKKDYDKRRDLAKKDAQREMARAV 149 >gi|21221411|ref|NP_627190.1| SsrA-binding protein [Streptomyces coelicolor A3(2)] gi|256787405|ref|ZP_05525836.1| SsrA-binding protein [Streptomyces lividans TK24] gi|289771305|ref|ZP_06530683.1| SsrA-binding protein [Streptomyces lividans TK24] gi|22096180|sp|Q9L1S9|SSRP_STRCO RecName: Full=SsrA-binding protein gi|6911996|emb|CAB72212.1| small protein B homologue [Streptomyces coelicolor A3(2)] gi|289701504|gb|EFD68933.1| SsrA-binding protein [Streptomyces lividans TK24] Length = 159 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VL+GTEVKSLR + +++D + + Sbjct: 1 MAKEK----GRKLIAQNKKARHDYQILDTYEAGLVLSGTEVKSLRQGRASLADGFVQLDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHRVEIDKLESKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALARGKKEYDKRQTLREKQDRREAERTI 150 >gi|117618958|ref|YP_855981.1| SsrA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|187611493|sp|A0KI80|SSRP_AERHH RecName: Full=SsrA-binding protein gi|117560365|gb|ABK37313.1| SsrA-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 162 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 3/160 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS K S+ ++ NR AR+ Y I EAG+ L G EVKSLR K NIS++Y F Sbjct: 1 MSKKNSKNKAGSNTIALNRSARHEYFIEEKIEAGLSLQGWEVKSLRAGKANISEAYVIFR 60 Query: 60 NDEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +L S++P ++ P R RKLLLS+RE+ +L + + R G T+VP+ +Y+ Sbjct: 61 DGEAYLFGSSFLPLQAASSHVVCDPTRTRKLLLSRRELDKLESLIARQGYTVVPLALYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ L +GKK +DKRE K R+WDR+K RI++ Sbjct: 121 Q-CWVKVEIGLVKGKKEHDKREDTKAREWDREKARIMKNK 159 >gi|330828890|ref|YP_004391842.1| SsrA-binding protein [Aeromonas veronii B565] gi|328804026|gb|AEB49225.1| SsrA-binding protein [Aeromonas veronii B565] Length = 162 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 96/160 (60%), Gaps = 3/160 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS K S+ ++ NR AR+ Y I EAG+ L G EVKSLR K NIS++Y F Sbjct: 1 MSKKNSKNKAGSSTIALNRTARHEYFIEEKIEAGLSLQGWEVKSLRAGKANISEAYVIFR 60 Query: 60 NDEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +L S++P ++ P R RKLLLS+RE+ +L + + R G T+VP+ +Y+ Sbjct: 61 DGEAYLFGSSFLPLQAASSHVVCDPTRTRKLLLSRRELDKLESLIARQGYTIVPLALYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ L +GKK +DKRE K R+WDR+K RI++ Sbjct: 121 Q-CWVKVEIGLVKGKKEHDKREDTKAREWDREKARIMKNK 159 >gi|257465420|ref|ZP_05629791.1| SsrA-binding protein [Actinobacillus minor 202] gi|257451080|gb|EEV25123.1| SsrA-binding protein [Actinobacillus minor 202] Length = 159 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF + + Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRDGQ 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL++RE+ L+ V RDGMT+V + +Y+ A Sbjct: 61 AFLFGATITPLNVASTHIVADPTRTRKLLLNRRELDSLFGKVNRDGMTVVALSLYWKA-A 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKIGVAKGKKLHDKREDIKDREWQLAKQRIMKNAN 157 >gi|302534755|ref|ZP_07287097.1| SsrA-binding protein [Streptomyces sp. C] gi|302443650|gb|EFL15466.1| SsrA-binding protein [Streptomyces sp. C] Length = 161 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++E GIVLTGTEVKSLR + ++ D + + E Sbjct: 1 MAKEK----GRKLIAQNKKARHDYAIIDTYECGIVLTGTEVKSLRQGRASLVDGFVSVEG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ N ++PEY Q NH RR RKLL+ + EI +L G T+VP+ +YF Sbjct: 57 REVWMYNVHVPEYSQGTWTNHSARRKRKLLMHREEIDKLERKAEESGHTVVPLSLYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ R + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDTRETQRAI 150 >gi|25027370|ref|NP_737424.1| SsrA-binding protein [Corynebacterium efficiens YS-314] gi|259506491|ref|ZP_05749393.1| SsrA-binding protein [Corynebacterium efficiens YS-314] gi|29336731|sp|Q8FRE7|SSRP_COREF RecName: Full=SsrA-binding protein gi|23492651|dbj|BAC17624.1| putative SsrA-binding protein [Corynebacterium efficiens YS-314] gi|259165911|gb|EEW50465.1| SsrA-binding protein [Corynebacterium efficiens YS-314] Length = 164 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 2/159 (1%) Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + + +V++ NRKAR++Y I+ ++EAG+VL GTE+KSLR K ++ D++A + Sbjct: 1 MAKKKKKVDENNQVLATNRKARHDYQILDTWEAGVVLLGTEIKSLREGKASLVDAFAVID 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E+WL N +IP Y + NH P+R RKLLL +REI L VR TLVP+K+Y Sbjct: 61 NGEVWLHNLHIPTYSMGSWTNHSPKRTRKLLLHRREIDSLMGKVRDGNRTLVPLKLYL-V 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++L LAQGK++YDKR+ K+R +R+ R L Sbjct: 120 NGRVKLELGLAQGKQDYDKRQDIKRRTEEREVTRELGRR 158 >gi|290968526|ref|ZP_06560065.1| SsrA-binding protein [Megasphaera genomosp. type_1 str. 28L] gi|290781522|gb|EFD94111.1| SsrA-binding protein [Megasphaera genomosp. type_1 str. 28L] Length = 156 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ K +++NRKAR++Y I ++EAGI LTGTEVKSLR +VN+ DS+ E E+W Sbjct: 2 AKPKSGIKYIAENRKARHDYFIHDTYEAGIALTGTEVKSLRCGRVNVKDSFCRLEGGEVW 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L +I Y Q NRFNH P R RKLLL K EI +L V+ G TL+P+ +YF KG K Sbjct: 62 LEAMHISPYEQGNRFNHDPLRTRKLLLHKYEILKLIGKVKEKGYTLIPLNLYFK-KGRVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +AL GKK YDKR+ +++ R+ R L+E Sbjct: 121 VTVALVTGKKLYDKRQASAEKEAKREMDRRLKER 154 >gi|302344577|ref|YP_003809106.1| SsrA-binding protein [Desulfarculus baarsii DSM 2075] gi|301641190|gb|ADK86512.1| SsrA-binding protein [Desulfarculus baarsii DSM 2075] Length = 151 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 74/149 (49%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K+++ NRKAR+NY + FEAG+VLTGTEVKSLR+ K ++ D+YA +N E+WL N Sbjct: 4 TGVKIIAVNRKARFNYELGDRFEAGMVLTGTEVKSLRLGKASLVDAYAKIKNGELWLVNC 63 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I Y A NH P R RKLLL KREI +L + + G +L+P+ +YF G AK++LA Sbjct: 64 QIQAYPFAYYDNHEPTRQRKLLLHKREIAKLASKTQEQGNSLIPLALYFK-NGRAKVELA 122 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GKK +DKR + K+RD R+ R LR Sbjct: 123 LAKGKKLHDKRASIKERDQQREMERALRR 151 >gi|269792417|ref|YP_003317321.1| SsrA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100052|gb|ACZ19039.1| SsrA-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 151 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 96/148 (64%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +VV+ NRKAR++Y I+ + E G+VLTGTE+KSLR +VN+ D YAT ++ E+WL +I Sbjct: 4 DRVVAQNRKARHDYFILDTLEVGMVLTGTEIKSLREGRVNLKDGYATVKDGELWLLGVHI 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + + +N P R RKLL SK EI +L +R G+TLVP+KIY AK++L +A Sbjct: 64 APYEKGSYYNVDPERPRKLLASKGEILKLSQRIREKGLTLVPLKIYIKGNRWAKVELGIA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKR+ ++ R+ R ++ Sbjct: 124 KGKALHDKRDALAEKQAKREMERAIKSR 151 >gi|15644629|ref|NP_228068.1| SsrA-binding protein [Thermotoga maritima MSB8] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 76/145 (52%), Positives = 106/145 (73%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F+N E++L N +IP Sbjct: 11 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIP 70 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y +NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+ Sbjct: 71 PYSHGGVYNHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVAR 130 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK YDKRE KKR+ +R+ ++ Sbjct: 131 GKKKYDKREAIKKREMERKIREYMK 155 >gi|126726153|ref|ZP_01741995.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2150] gi|126705357|gb|EBA04448.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2150] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 79/159 (49%), Positives = 114/159 (71%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ +P K++++NR+ARY+Y I E G++L G+EVKS+R NI++SYA E Sbjct: 1 MA-NTKSDPNYKIIAENRRARYDYAIEDDIECGVILMGSEVKSMRNGGSNIAESYAAVEE 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSY+ Y QA + H +R RKL++SKRE+ +L+ A R GMTLVP+ +YFN K Sbjct: 60 GELWLVNSYVAPYEQAKTWGHLEKRRRKLMVSKRELSKLWQATGRQGMTLVPLVMYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G KI L +A+GKKN DKR+TE KRDW RQK RI+++++ Sbjct: 120 GRVKIKLGIAKGKKNVDKRQTEAKRDWGRQKARIMKQNS 158 >gi|304438604|ref|ZP_07398543.1| SsrA-binding protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368442|gb|EFM22128.1| SsrA-binding protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 157 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N ++ +NRKAR++Y I ++EAG+ L GTEVKSLR K N+ DSYA +N E++L Sbjct: 3 KKNDGVRIACENRKARHDYFIHETYEAGMELVGTEVKSLRAGKANLRDSYAYIKNGEVFL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF G AK+ Sbjct: 63 DHMHISPYDQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-HGRAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK NYDKR++ K++ R+ + L+ Sbjct: 122 ELALASGKHNYDKRQSLKEKAAKREVEQALKSR 154 >gi|228975191|ref|ZP_04135749.1| hypothetical protein bthur0003_49380 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228784470|gb|EEM32491.1| hypothetical protein bthur0003_49380 [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 190 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 42 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 101 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 102 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 160 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R+ R+ Sbjct: 161 GKKQYDKRHDLKEKEAKREIARVFRDR 187 >gi|284989799|ref|YP_003408353.1| SsrA-binding protein [Geodermatophilus obscurus DSM 43160] gi|284063044|gb|ADB73982.1| SsrA-binding protein [Geodermatophilus obscurus DSM 43160] Length = 158 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 99/149 (66%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K+++ N+KAR++Y I+ ++E G+VLTGTEVKSLR + ++ D +AT + E+WL + + Sbjct: 6 GRKLIAQNKKARHDYSILDTYEVGLVLTGTEVKSLRAGRASLVDGFATVDGGEVWLQHVH 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY + NH PRR RK+L+ + EI +L + G+TLVP+ +YF G K LAL Sbjct: 66 IPEYAEGTWTNHAPRRKRKVLMHRAEIDKLIGKTKEGGLTLVPLDLYFKD-GKVKATLAL 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GK++YDKR+ +RD R+ R + Sbjct: 125 AKGKRSYDKRQDLAERDSRREIQRAFGRY 153 >gi|256824895|ref|YP_003148855.1| SsrA-binding protein [Kytococcus sedentarius DSM 20547] gi|256688288|gb|ACV06090.1| SsrA-binding protein [Kytococcus sedentarius DSM 20547] Length = 167 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 1 MSLKSRG---NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ K + +P KVV+ NRKAR++Y I ++EAG+ LTGTEVKSLR+ + ++ D YAT Sbjct: 1 MATKKKQAKDDPRNKVVATNRKARHDYIIEDTYEAGLALTGTEVKSLRMGRASLVDGYAT 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 N E++L N +IPEYL + NH RR RK+LL + E+ +L G T+VP+++YF Sbjct: 61 DRNGELFLENVHIPEYLNGSWTNHSARRKRKMLLHRHELDKLIGKSNEAGHTIVPLRLYF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G K+++ALA+GKK YDKR +++ +R+K + Sbjct: 121 KD-GRVKVEIALAKGKKQYDKRHALREKQDEREKQAQM 157 >gi|147679047|ref|YP_001213262.1| SsrA-binding protein [Pelotomaculum thermopropionicum SI] gi|187629766|sp|A5CYM8|SSRP_PELTS RecName: Full=SsrA-binding protein gi|146275144|dbj|BAF60893.1| tmRNA-binding protein [Pelotomaculum thermopropionicum SI] Length = 153 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 77/147 (52%), Positives = 103/147 (70%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV++NR+AR+ YHI+ +FEAG+ L GTEVKSLR K ++ DS+A EN E+ L N +I Sbjct: 4 KVVTENRRARHEYHILETFEAGLALRGTEVKSLRAGKASLQDSFARVENGELLLYNMHIS 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N+FNH P+R R+LL+ K EI RL R G+ L+P+K+YF GLAKI+LALA+ Sbjct: 64 PYEQGNQFNHEPKRTRRLLMHKYEILRLMGKTREKGLALIPLKVYFK-NGLAKIELALAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YD+RE RD R+ R ++E Sbjct: 123 GKKIYDRREDIASRDARREIDRAIKER 149 >gi|240949609|ref|ZP_04753944.1| SsrA-binding protein [Actinobacillus minor NM305] gi|240295867|gb|EER46543.1| SsrA-binding protein [Actinobacillus minor NM305] Length = 159 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF + + Sbjct: 1 MSKKPKVASNTIALNKRARHEYFIEEEVEAGLELQGWEVKSLRAGKANIGDSYVTFRDGQ 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL++RE+ L+ V RDGMT+V + +Y+ A Sbjct: 61 AFLFGATITPLNVASTHIVADPTRTRKLLLNRRELDSLFGKVNRDGMTVVALSLYWKA-A 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKIGVAKGKKLHDKREDIKDREWQLAKQRIMKNAN 157 >gi|213966063|ref|ZP_03394251.1| SsrA-binding protein [Corynebacterium amycolatum SK46] gi|213951261|gb|EEB62655.1| SsrA-binding protein [Corynebacterium amycolatum SK46] Length = 167 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + VV+ NR+AR++Y+I+ ++E G+VL GTEVK+LR K +++D++AT ++ E+WL Sbjct: 12 SANNAVVATNRRARHDYNILDTYECGVVLVGTEVKALREGKASLNDAFATIDDGEVWLRG 71 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +IPEY + NH PRR+RKLLL ++EI L+ VR TLVP+K+YF G K++L Sbjct: 72 LHIPEYSYGSWTNHSPRRSRKLLLHRKEIDTLWGKVRDGNNTLVPLKLYFT-NGRLKVEL 130 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ALA+GK++YDKR+ K+R +R+ R L Sbjct: 131 ALARGKQDYDKRQDIKRRTEEREATRALGRR 161 >gi|77164705|ref|YP_343230.1| SsrA-binding protein [Nitrosococcus oceani ATCC 19707] gi|254434040|ref|ZP_05047548.1| SsrA-binding protein [Nitrosococcus oceani AFC27] gi|123594509|sp|Q3JBU6|SSRP_NITOC RecName: Full=SsrA-binding protein gi|76883019|gb|ABA57700.1| SsrA-binding protein [Nitrosococcus oceani ATCC 19707] gi|207090373|gb|EDZ67644.1| SsrA-binding protein [Nitrosococcus oceani AFC27] Length = 189 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 96/148 (64%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ NRKAR++Y I +EAG+VL G EVKSLR +V +++ Y + E+WL ++ Sbjct: 14 NVIALNRKARHDYFIEERYEAGLVLEGWEVKSLRAGRVQLNEGYCLLKGGEVWLFGVHLS 73 Query: 72 EYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + + P R RKLLL +E+ +L AV R G L+P+ +Y+ +G K+++ALA Sbjct: 74 PLNTVSTHIHPDPLRTRKLLLHAKELRKLIGAVERKGYALIPLTLYWK-RGRVKLEIALA 132 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ YDKR TEK+++W RQK R+L+ H Sbjct: 133 KGKQKYDKRATEKEKEWTRQKERLLKVH 160 >gi|152977347|ref|YP_001376864.1| SsrA-binding protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189046817|sp|A7GUR1|SSRP_BACCN RecName: Full=SsrA-binding protein gi|152026099|gb|ABS23869.1| SsrA-binding protein [Bacillus cytotoxicus NVH 391-98] Length = 155 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+K++R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKAFHDYFIDETYEAGLVLQGTEIKAIRAGRVNLKDAFARVHNGEVWVHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L + G TLVP+KIY G AK+ L Sbjct: 63 MHISPYEQGNRFNHDPLRTRKLLLHKKEIQKLVGYTKETGYTLVPLKIYLK-NGFAKMAL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R R+ Sbjct: 122 GLARGKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|161830789|ref|YP_001597155.1| SsrA-binding protein [Coxiella burnetii RSA 331] gi|189046825|sp|A9N8I5|SSRP_COXBR RecName: Full=SsrA-binding protein gi|161762656|gb|ABX78298.1| SsrA-binding protein [Coxiella burnetii RSA 331] Length = 159 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 110/159 (69%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F+ Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKG 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +++ A P+R+RKLLL+K EI +L+ AV++ G+T+VP+ ++++ Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKPEIGKLFGAVQKQGLTVVPLDLHWHK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158 >gi|78356135|ref|YP_387584.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552909|sp|Q313K7|SSRP_DESDG RecName: Full=SsrA-binding protein gi|78218540|gb|ABB37889.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 155 Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + +++ N+KAR+ Y ++ FEAGI L GTEVKSLR +V+ +DSY T N+E Sbjct: 1 MTKKKSSGGALIAQNKKARHLYELLEFFEAGIALAGTEVKSLRAGQVSFTDSYVTIHNNE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 W+ +I Y A H P R+RKLLL REI L A V + G+T+VP+K+YF Sbjct: 61 AWIVGMHIAPYANAGYVQHDPDRDRKLLLHAREIDTLRARVEQKGLTVVPVKLYFK-NSR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++A+ +GKK +DKR+ K+RD +R+ R + H Sbjct: 120 VKLEIAVGRGKKLHDKRQDIKQRDVERETRREIMRH 155 >gi|56421578|ref|YP_148896.1| SsrA-binding protein [Geobacillus kaustophilus HTA426] gi|261420482|ref|YP_003254164.1| SsrA-binding protein [Geobacillus sp. Y412MC61] gi|319768153|ref|YP_004133654.1| SsrA-binding protein [Geobacillus sp. Y412MC52] gi|61216397|sp|Q5KVF8|SSRP_GEOKA RecName: Full=SsrA-binding protein gi|56381420|dbj|BAD77328.1| ssrA RNA (tmRNA)-binding protein [Geobacillus kaustophilus HTA426] gi|261376939|gb|ACX79682.1| SsrA-binding protein [Geobacillus sp. Y412MC61] gi|317113019|gb|ADU95511.1| SsrA-binding protein [Geobacillus sp. Y412MC52] Length = 155 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I Sbjct: 7 KVIAQNKKAHHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+R+ R+ R RE Sbjct: 126 GKKKYDKREDMKRREAQREIERAFRER 152 >gi|226939707|ref|YP_002794780.1| SmpB [Laribacter hongkongensis HLHK9] gi|226714633|gb|ACO73771.1| SmpB [Laribacter hongkongensis HLHK9] Length = 150 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + +N+KA ++Y I FEAG+VL G EVKS+R +V + + Y + WL +I Sbjct: 3 IIENKKAFHDYFIEERFEAGLVLEGWEVKSIRAGRVQLKEGYVVLIDGAFWLIGCHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL++++I RL V R G TL+P+ +++ A G K+++ LA+G Sbjct: 63 PTASTHIHPDPTRRRKLLLARKQIDRLIGKVERAGYTLMPLNLHYKA-GWIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRE+EK+R+W R+K RI+++ Sbjct: 122 KKQHDKRESEKEREWQREKQRIIKD 146 >gi|89071040|ref|ZP_01158254.1| SsrA-binding protein [Oceanicola granulosus HTCC2516] gi|89043399|gb|EAR49617.1| SsrA-binding protein [Oceanicola granulosus HTCC2516] Length = 156 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 92/158 (58%), Positives = 115/158 (72%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS GN KVV++NR+ARY+Y I E GIVLTG+EVKSLR + NI+DSYA + Sbjct: 1 MA-KSDGNKNYKVVAENRRARYDYAIEDDLEVGIVLTGSEVKSLRTGQSNIADSYAEVDG 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WLTN+YI Y QA F H RR RKLL SKRE+ RL+ A +R GMTLVP+ +YFN + Sbjct: 60 GELWLTNAYIAPYTQAM-FPHEERRRRKLLASKREVARLWNATQRQGMTLVPLVMYFNDR 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ K+ +A A+GKK DKR TE KRDW RQK R+L+EH Sbjct: 119 GIVKLKVATAKGKKTQDKRATEAKRDWSRQKQRLLKEH 156 >gi|169349587|ref|ZP_02866525.1| hypothetical protein CLOSPI_00324 [Clostridium spiroforme DSM 1552] gi|169293662|gb|EDS75795.1| hypothetical protein CLOSPI_00324 [Clostridium spiroforme DSM 1552] Length = 150 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 104/147 (70%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++S+N+KA ++Y I+ ++EAGI L GTE+KS+R+ VN+ D++ +++E ++ N +I Sbjct: 4 KIISNNKKAYHDYFILDTYEAGIELKGTEIKSVRLGNVNLKDAFVRIKDNEAFVENMHIS 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y NRFNH PRRNRKLLL K+EI ++ ++ G+T+VP K+YFN K+++ LA+ Sbjct: 64 PYSHGNRFNHEPRRNRKLLLHKKEILKISNKLKEGGLTVVPTKLYFNTGSKVKLEIGLAR 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR+ K+RD R+ R L+ + Sbjct: 124 GKKLYDKRQDIKERDSKREIQRALKNY 150 >gi|126657217|ref|ZP_01728383.1| SsrA-binding protein [Cyanothece sp. CCY0110] gi|126621488|gb|EAZ92199.1| SsrA-binding protein [Cyanothece sp. CCY0110] Length = 155 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 2/154 (1%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 N K+VSDNRKAR+ Y I+ ++EAGI L GTEVKS+R +VN++D YA +N E WL Sbjct: 3 NDNKAIKIVSDNRKARFLYEILETYEAGIELVGTEVKSIRAGRVNLADGYAFIKNGEAWL 62 Query: 66 TNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 TN +I Y + FNH P+R RKLLL +++I +L + + G+TLVP+K+YF K Sbjct: 63 TNVHISPYQGSSQYFNHDPKRTRKLLLHRKQISQLIGKIEQKGLTLVPLKLYFKGS-WVK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L L +GKK +DKRET K+R R+ R ++ Sbjct: 122 VGLGLGRGKKLHDKRETVKRRQDQREISRAMKRF 155 >gi|50085928|ref|YP_047438.1| SsrA-binding protein [Acinetobacter sp. ADP1] gi|61216505|sp|Q6F8J9|SSRP_ACIAD RecName: Full=SsrA-binding protein gi|49531904|emb|CAG69616.1| ssrA-binding protein (Small protein B) [Acinetobacter sp. ADP1] Length = 158 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 96/159 (60%), Gaps = 7/159 (4%) Query: 1 MSLK---SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 MS + N ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY Sbjct: 1 MSKAVVVKKNNGG--TIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYII 58 Query: 58 FENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 F+N E +L + I P ++ R RKLLLS+REI +L AV + G + VP+ Y Sbjct: 59 FKNGEAYLFGAQIQPLLTASSHVVPEATRTRKLLLSRREIGQLLGAVNQKGYSCVPLACY 118 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 + L K+++AL +GK+ +DKR TEK RDW R K RI+ Sbjct: 119 WKGH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIM 156 >gi|260771338|ref|ZP_05880264.1| tmRNA-binding protein SmpB [Vibrio furnissii CIP 102972] gi|260613654|gb|EEX38847.1| tmRNA-binding protein SmpB [Vibrio furnissii CIP 102972] gi|315180938|gb|ADT87852.1| SsrA-binding protein [Vibrio furnissii NCTC 11218] Length = 162 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 94/159 (59%), Gaps = 2/159 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 KS ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY + Sbjct: 3 KKKSNTKAGSNTIALNKKARHEYFIEDEIEAGMELQGWEVKSLRQGKANIAESYVFLRDG 62 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL+ +Y++ + Sbjct: 63 EAFISGMTITPLQQASTHVVANPTRVRKLLLSRRELDNLFGRINREGMTLIATALYWS-R 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + +A+GKK +DKR+ K++DW RQK R+++ +N Sbjct: 122 SWVKIKIGVAKGKKLHDKRDDLKEKDWQRQKARVMKSNN 160 >gi|323359622|ref|YP_004226018.1| tmRNA-binding protein [Microbacterium testaceum StLB037] gi|323275993|dbj|BAJ76138.1| tmRNA-binding protein [Microbacterium testaceum StLB037] Length = 158 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 105/150 (70%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K+++ N+KAR++Y I +++EAG+VLTGTEVKSLR + N++D YA + + +L + Sbjct: 6 GEKLIASNKKARHDYAIEKTYEAGLVLTGTEVKSLRQGRANLTDGYAYIDGGQAYLDAVH 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY Q + NH +R RKLLL K EI +L AV G TLVP+++YF G AK+++A+ Sbjct: 66 IPEYSQGHWTNHSAKRTRKLLLHKEEIVKLSHAVAAGGYTLVPLRLYFLD-GRAKVEIAV 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GK+ ++KR+T ++R+ R+ R +R N Sbjct: 125 AKGKREFEKRQTIREREDKREAERAMRTKN 154 >gi|229032740|ref|ZP_04188700.1| hypothetical protein bcere0028_47730 [Bacillus cereus AH1271] gi|228728567|gb|EEL79583.1| hypothetical protein bcere0028_47730 [Bacillus cereus AH1271] Length = 191 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 39 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 98 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L Sbjct: 99 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLTGASKETGYALVPVRIYLK-NGFAKMAL 157 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R R+ Sbjct: 158 GLAKGKKQYDKRNDLKEKEAKREIARAFRDR 188 >gi|303239052|ref|ZP_07325582.1| SsrA-binding protein [Acetivibrio cellulolyticus CD2] gi|302593390|gb|EFL63108.1| SsrA-binding protein [Acetivibrio cellulolyticus CD2] Length = 154 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 110/159 (69%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +++ K ++ N+KAR++Y I +FEAGIVL+GTEVKS+R KV+I DSYA ++ Sbjct: 1 MAKEAK-----KTIAQNKKARHDYFIEETFEAGIVLSGTEVKSIRQGKVSIKDSYAIIKS 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E+++ ++ Y Q N FN P R+RKLL+ + EI++L ++++ GM+LVP+++YF Sbjct: 56 EEVFIFGMHVSPYEQGNIFNKDPLRDRKLLMHRYEINKLIGSIQQKGMSLVPIELYFR-N 114 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K++L L +GKK YDKRE K+D R+ R ++E N Sbjct: 115 GKVKLELGLGKGKKLYDKREDIAKKDAMREIDRRMKESN 153 >gi|61216431|sp|Q5WDM4|SSRP_BACSK RecName: Full=SsrA-binding protein Length = 156 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 74/147 (50%), Positives = 107/147 (72%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y I +FEAGIVLTGTE+KS+R K+N+ DS+A +N E +L N++I Sbjct: 8 KVVAQNKKARHDYFIEETFEAGIVLTGTEIKSIRAGKMNLKDSFARIKNGEAFLYNAHIS 67 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY Q NR+NH P R RKLLL K++I+ L ++ G ++VP+K+Y G AK+ + LA+ Sbjct: 68 EYEQGNRYNHEPTRPRKLLLHKKQINTLIGQTQQKGYSIVPLKVYIK-NGFAKVLIGLAK 126 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKNYDKRET +++D R+ R ++E Sbjct: 127 GKKNYDKRETLRRKDAKREVERAIKER 153 >gi|163848849|ref|YP_001636893.1| SsrA-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222526804|ref|YP_002571275.1| SsrA-binding protein [Chloroflexus sp. Y-400-fl] gi|187611475|sp|A9WJ45|SSRP_CHLAA RecName: Full=SsrA-binding protein gi|254778352|sp|B9LD60|SSRP_CHLSY RecName: Full=SsrA-binding protein gi|163670138|gb|ABY36504.1| SsrA-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222450683|gb|ACM54949.1| SsrA-binding protein [Chloroflexus sp. Y-400-fl] Length = 160 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 107/158 (67%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +P VV++NRKAR++Y I + EAGIVL+G+E+KS+R +VN+ S+A + Sbjct: 1 MTATKHKHPG--VVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVID 58 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DE++L +++I Y Q+ FNH P R RKLLL +REI+RL VR GMTLVP+K+YF Sbjct: 59 DEVFLYDAHIAPYEQSGKYFNHDPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKG 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + AK++L +A+GKK YDKRE +RD R R L+ Sbjct: 119 R-RAKVELGVARGKKIYDKREDIARRDAARDIDRALKR 155 >gi|19552031|ref|NP_600033.1| SsrA-binding protein [Corynebacterium glutamicum ATCC 13032] gi|62389694|ref|YP_225096.1| SsrA-binding protein [Corynebacterium glutamicum ATCC 13032] gi|145294964|ref|YP_001137785.1| SsrA-binding protein [Corynebacterium glutamicum R] gi|23822164|sp|Q8NS75|SSRP_CORGL RecName: Full=SsrA-binding protein gi|166223213|sp|A4QCD6|SSRP_CORGB RecName: Full=SsrA-binding protein gi|21323570|dbj|BAB98197.1| tmRNA-binding protein [Corynebacterium glutamicum ATCC 13032] gi|41325029|emb|CAF19510.1| SMALL PROTEIN B HOMOLOGUE [Corynebacterium glutamicum ATCC 13032] gi|140844884|dbj|BAF53883.1| hypothetical protein [Corynebacterium glutamicum R] Length = 164 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 106/159 (66%), Gaps = 2/159 (1%) Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + + V++ NRKAR++YHI+ ++EAG+VL GTE+KSLR KV++ DS+AT + Sbjct: 1 MAKKKKKVDENNSVLATNRKARHDYHIIDTWEAGVVLLGTEIKSLREGKVSLVDSFATID 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N EIWL + +IP+Y + NH P+R RKLLL + EI L VR TLVP+K+Y Sbjct: 61 NGEIWLQHLHIPQYSMGSWTNHTPKRTRKLLLHRNEIDSLMGKVRDGNRTLVPLKLYLK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++L LAQGK++YDKR+ K+R +R+ R L Sbjct: 120 NGRVKLELGLAQGKQDYDKRQDIKRRTEEREVTRELGRR 158 >gi|67921052|ref|ZP_00514571.1| SmpB protein [Crocosphaera watsonii WH 8501] gi|67857169|gb|EAM52409.1| SmpB protein [Crocosphaera watsonii WH 8501] Length = 155 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 103/154 (66%), Gaps = 2/154 (1%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 N K++SDNRKAR+ Y I+ ++EAGI L GTEVKS+R +VN++D YA ++ E WL Sbjct: 3 NENKATKIISDNRKARFLYEILETYEAGIELVGTEVKSIRAGRVNLADGYAFIKDGEAWL 62 Query: 66 TNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 TN +I Y + FNH P+R RKLLL ++EI++L + + G+TLVP+K+YF K Sbjct: 63 TNVHISPYQGSSQYFNHEPKRTRKLLLHRKEINQLIGKIEQKGLTLVPLKLYFKGS-RVK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + + L +GKK +DKRET K+R R+ R ++ + Sbjct: 122 VGIGLGKGKKLHDKRETVKRRQDQREMSRAMKRY 155 >gi|307245731|ref|ZP_07527817.1| hypothetical protein appser1_9340 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254702|ref|ZP_07536530.1| hypothetical protein appser9_9420 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259144|ref|ZP_07540874.1| hypothetical protein appser11_9420 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853433|gb|EFM85652.1| hypothetical protein appser1_9340 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862375|gb|EFM94341.1| hypothetical protein appser9_9420 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866811|gb|EFM98669.1| hypothetical protein appser11_9420 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 159 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+ Sbjct: 61 AFLFGATITPLNMASTHIVCDPTRTRKLLLNKRELDSLFGKVNRDGMTIVALSLYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKVGIAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157 >gi|237747548|ref|ZP_04578028.1| tmRNA-binding protein small potein B [Oxalobacter formigenes OXCC13] gi|229378910|gb|EEO29001.1| tmRNA-binding protein small potein B [Oxalobacter formigenes OXCC13] Length = 149 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 95/147 (64%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I FEAG+ L G EVKS+R +V + ++Y + EI+L ++I Sbjct: 2 TIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKGVEIFLFGAHISP 61 Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R+RKLL+ EI +L V R G TLVP+ ++F+ KG K ++ LA+ Sbjct: 62 LPTASTHIKPDPVRDRKLLMHADEISKLIGKVERAGYTLVPLNMHFS-KGRIKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRETEK+RDW R++ +I++++ Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQN 147 >gi|317124431|ref|YP_004098543.1| SsrA-binding protein [Intrasporangium calvum DSM 43043] gi|315588519|gb|ADU47816.1| SsrA-binding protein [Intrasporangium calvum DSM 43043] Length = 159 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 99/149 (66%), Gaps = 1/149 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + +V+ NRKAR++YHI +FEAGIVL+GTEVK+LR+ + ++ D +A F DE++L Sbjct: 3 KEKGRSLVASNRKARHDYHIEDTFEAGIVLSGTEVKALRMGRASLVDGFAMFTGDELYLE 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEYL NH PRR RKLLL + E+ ++ R G T+VP+ +YF G AK++ Sbjct: 63 NVHIPEYLNGTWNNHAPRRKRKLLLHRSELEKISGKTRESGRTIVPLALYFKD-GRAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 +A+A GKK YDKR ++R R+ R + Sbjct: 122 IAIATGKKQYDKRHALRERQDQRETARAM 150 >gi|77919420|ref|YP_357235.1| SsrA-binding protein [Pelobacter carbinolicus DSM 2380] gi|123573991|sp|Q3A3J2|SSRP_PELCD RecName: Full=SsrA-binding protein gi|77545503|gb|ABA89065.1| SsrA-binding protein [Pelobacter carbinolicus DSM 2380] Length = 150 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 95/149 (63%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K++++N+KA ++Y I EAG+VL GTEVKSLR+ K N+ D++ E+++ N + Sbjct: 2 GIKIIANNKKAYHDYFIDEVLEAGMVLLGTEVKSLRLGKANLKDAFCRIMGGELYVNNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR N P R RKLL+ + E+ +L V G++LVP K+YF G KI++ + Sbjct: 62 ISPYEFGNRENADPTRARKLLVHRAELDKLARKVDEKGLSLVPTKLYFKE-GRVKIEIGI 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK +DKR+T K ++ DR+ R LR+ Sbjct: 121 ARGKKLHDKRQTLKSKEADREMARALRDR 149 >gi|300863928|ref|ZP_07108843.1| SsrA-binding protein [Oscillatoria sp. PCC 6506] gi|300338048|emb|CBN53989.1| SsrA-binding protein [Oscillatoria sp. PCC 6506] Length = 159 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS KS + + K++SDNR+AR+ Y I+ +++ GI L GTEVKS+R KVN+ D YA Sbjct: 1 MSEKSEKKSEGYKIISDNRQARFLYEILETYQVGIELKGTEVKSIREGKVNLRDGYALVR 60 Query: 60 NDEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E+WL N++I + +A+ FNH PRR RKLL+ K+EI +L V + G+TLVP+K+YF Sbjct: 61 NGEVWLINAHISPWGKASDYFNHDPRRTRKLLMHKQEIRKLLGKVEQQGLTLVPLKMYFK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + G K+D+AL +GKK +DKR++ K+RD R R +++ Sbjct: 121 S-GWVKLDIALGKGKKLHDKRDSIKERDDKRSIERAMKQF 159 >gi|148269806|ref|YP_001244266.1| SsrA-binding protein [Thermotoga petrophila RKU-1] gi|170288492|ref|YP_001738730.1| SsrA-binding protein [Thermotoga sp. RQ2] gi|8134712|sp|P56944|SSRP_THEMA RecName: Full=SsrA-binding protein gi|166223470|sp|A5IKG7|SSRP_THEP1 RecName: Full=SsrA-binding protein gi|238688822|sp|B1L9P9|SSRP_THESQ RecName: Full=SsrA-binding protein gi|147735350|gb|ABQ46690.1| SsrA-binding protein [Thermotoga petrophila RKU-1] gi|170175995|gb|ACB09047.1| SsrA-binding protein [Thermotoga sp. RQ2] Length = 150 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 76/145 (52%), Positives = 106/145 (73%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F+N E++L N +IP Sbjct: 3 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIP 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y +NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+ Sbjct: 63 PYSHGGVYNHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVAR 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK YDKRE KKR+ +R+ ++ Sbjct: 123 GKKKYDKREAIKKREMERKIREYMK 147 >gi|20807465|ref|NP_622636.1| SsrA-binding protein [Thermoanaerobacter tengcongensis MB4] gi|22096157|sp|Q8RB39|SSRP_THETN RecName: Full=SsrA-binding protein gi|20515991|gb|AAM24240.1| tmRNA-binding protein [Thermoanaerobacter tengcongensis MB4] Length = 158 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 101/154 (65%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ K+++ NRKA ++Y I ++EAGI L GTEVKS+R KVN+ DS+A EN+E+ Sbjct: 2 SKEKEEIKIIAQNRKAFHDYFIEETYEAGIELVGTEVKSVRQGKVNLKDSFARVENNEVI 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y + N FN P R RKLLL + EI++L V R G TL+P K+Y +GL K Sbjct: 62 LYNMHISPYEKGNIFNKDPLRPRKLLLHRHEINKLSGYVSRKGYTLIPTKVYLK-RGLVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++LA+A+GKK +DKRE +RD R+ + +E Sbjct: 121 VELAVAKGKKLFDKREDIARRDAKRELEKQFKEK 154 >gi|111023371|ref|YP_706343.1| SsrA-binding protein [Rhodococcus jostii RHA1] gi|123339713|sp|Q0S2Q1|SSRP_RHOSR RecName: Full=SsrA-binding protein gi|110822901|gb|ABG98185.1| SsrA-binding protein [Rhodococcus jostii RHA1] Length = 157 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 73/156 (46%), Positives = 103/156 (66%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +KV++ NRKAR+NY I+ +EAGI L GTEVKSLR K ++ D++AT ++ E Sbjct: 1 MKEK---GRKVIATNRKARHNYTILDVYEAGIALVGTEVKSLREGKASLVDAFATVDDGE 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL + +IPEY Q NH PRR RKLLL K+EI L R TLVP+ +YF+ G Sbjct: 58 VWLRSLHIPEYTQGTWTNHAPRRTRKLLLHKQEIEHLVGKTREGNQTLVPLSMYFSD-GK 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK++YDKR+ +R +R+ R L Sbjct: 117 VKVELALAKGKQDYDKRQDLARRTAEREVTRELGRR 152 >gi|149375778|ref|ZP_01893546.1| SsrA-binding protein [Marinobacter algicola DG893] gi|149359903|gb|EDM48359.1| SsrA-binding protein [Marinobacter algicola DG893] Length = 159 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 97/160 (60%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K G P ++ N+KA++ YHI FEAG+ L G EVKS+R K ++D+Y ++ Sbjct: 1 MSKKKPGAPSA-TIALNKKAKHEYHIEERFEAGLALLGWEVKSIRAGKAQLTDAYVLLKD 59 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL +EI ++ V + G T +P+ +Y+ Sbjct: 60 GEAWLLGSHIIPLTAASTHVIADPTRTRKLLLHAKEIAKIVGKVNQAGHTCIPLAMYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K K ++AL +GKK +DKR TEK+RDW+RQK RILRE N Sbjct: 119 KNKVKCEIALVKGKKLFDKRATEKERDWNRQKQRILRETN 158 >gi|320010496|gb|ADW05346.1| SsrA-binding protein [Streptomyces flavogriseus ATCC 33331] Length = 162 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +K+++ N+KAR++YH++ ++E G+VL GTEVKSLR+ + ++ D + ++ E Sbjct: 1 MAKEKDTGRKMIAQNKKARHDYHVLDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N ++PEY+Q NH +R RKLLL + EI +L + + G T+VP+ +YF Sbjct: 61 AWLHNVHVPEYVQGTWTNHSAKRKRKLLLHRAEIDKLRSKSQETGHTIVPLALYFKDS-R 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K+++ALA+GKK YDKR+T +++ R+ +R + Sbjct: 120 VKVEIALAKGKKEYDKRQTLREKQDTRETNRAI 152 >gi|27262178|gb|AAN87370.1| SsrA-binding protein [Heliobacillus mobilis] Length = 155 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 80/151 (52%), Positives = 112/151 (74%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + +KV+ DNR+AR++YHI ++EAG+ LTGTE+KSLR K NI D++A EN E+ L N Sbjct: 2 SEGQKVLCDNRRARHDYHIEEAYEAGMALTGTEIKSLRQGKGNIKDAFARVENGEVLLYN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + Q NR+NH PRR RKLLL+K EI +L AAV++ G+TLVP+++Y +GLAK++L Sbjct: 62 MHISPFEQGNRYNHEPRRTRKLLLNKSEIRKLGAAVQQKGLTLVPLRVYLK-RGLAKLEL 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+A+GKK YDKRE KRD R+ R +R+ Sbjct: 121 AIARGKKLYDKREDIAKRDAQREIARAVRQK 151 >gi|119715508|ref|YP_922473.1| SsrA-binding protein [Nocardioides sp. JS614] gi|166223232|sp|A1SG51|SSRP_NOCSJ RecName: Full=SsrA-binding protein gi|119536169|gb|ABL80786.1| SsrA-binding protein [Nocardioides sp. JS614] Length = 159 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 99/158 (62%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ N+KAR++YHI ++EAG+VL GTEVKSLR + ++ D + + Sbjct: 1 MAK----EQGRKLIAQNKKARHDYHIEDTYEAGLVLQGTEVKSLRQGRASLVDGFVDIDR 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +IPEY Q NH RR RKLLL++ EI ++ V G+T+VP+ +YF Sbjct: 57 GEAWLHGVHIPEYSQGTWTNHAARRKRKLLLNRDEIDKIERRVNEKGLTVVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+GKK++DKR +R +R+ + + Sbjct: 116 GRAKVEIALAKGKKSWDKRAALAERQANRETEQAVGRR 153 >gi|289642125|ref|ZP_06474277.1| SsrA-binding protein [Frankia symbiont of Datisca glomerata] gi|289508088|gb|EFD29035.1| SsrA-binding protein [Frankia symbiont of Datisca glomerata] Length = 159 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 99/158 (62%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+V+ NR+ R++Y I+ + EAGIVL GTEVKSLR + ++ D++A + Sbjct: 1 MAK----ETGRKLVAQNRRVRHDYTILDTIEAGIVLQGTEVKSLRAGRASLVDAFAQISD 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +IPEY + NH PRR RKLLL + EI +L R G+TLVP+ +YF Sbjct: 57 GEAWLHGVHIPEYTEGTWTNHAPRRRRKLLLHRDEIAKLVGKTREGGLTLVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+G+K YDKR +RD R+ R+L Sbjct: 116 GRAKVEIALARGRKTYDKRHALAERDASREVSRVLGRR 153 >gi|54026453|ref|YP_120695.1| SsrA-binding protein [Nocardia farcinica IFM 10152] gi|61216440|sp|Q5YR60|SSRP_NOCFA RecName: Full=SsrA-binding protein gi|54017961|dbj|BAD59331.1| putative small protein B [Nocardia farcinica IFM 10152] Length = 160 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 104/156 (66%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +KV++ NR+AR+NY I+ ++EAGIVL GTEVKSLR K ++ D++AT +N E Sbjct: 4 MKEK---GRKVIATNRRARHNYTILDTYEAGIVLVGTEVKSLREGKASLVDAFATVDNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL +IPE+ NH PRR RKLLL KREI RL R TLVP+ +YF+ G Sbjct: 61 VWLRGLHIPEFSHGTWTNHSPRRVRKLLLHKREIERLVGKSREGNQTLVPLSMYFSD-GK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK++YDKR+ +R +R+ R L Sbjct: 120 VKVELALARGKQDYDKRQDLARRTAEREVTRELGRR 155 >gi|229544469|gb|ACQ76411.1| SmpB [Escherichia coli K-12] Length = 151 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 2/149 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + E +L + Sbjct: 1 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 60 Query: 70 IPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ K+ + Sbjct: 61 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIG 119 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+GKK +DKR K+R+W K RI++ Sbjct: 120 VAKGKKQHDKRSDIKEREWQVDKARIMKN 148 >gi|255659086|ref|ZP_05404495.1| SsrA-binding protein [Mitsuokella multacida DSM 20544] gi|260848529|gb|EEX68536.1| SsrA-binding protein [Mitsuokella multacida DSM 20544] Length = 157 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 77/153 (50%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 R N K V +NRKAR++Y I ++EAGI L GTEVKSLR + N+ DSYA+ +N EI++ Sbjct: 3 RKNAGIKTVCENRKARHDYFIHETYEAGIALQGTEVKSLRAGRANLKDSYASIQNGEIFV 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y Q N FNH P R RKLL+ K EI +L+A R G TLVP+KIYF G AK+ Sbjct: 63 ENLHISPYDQGNIFNHDPLRRRKLLMHKAEIVKLFAKTREKGFTLVPLKIYFKQ-GRAKM 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++ALA GK NYDKR+ ++ R+ R L++ Sbjct: 122 EIALASGKHNYDKRQDLHEKAAKREIERALKDR 154 >gi|29831650|ref|NP_826284.1| SsrA-binding protein [Streptomyces avermitilis MA-4680] gi|39932353|sp|Q82D77|SSRP_STRAW RecName: Full=SsrA-binding protein gi|29608766|dbj|BAC72819.1| putative small protein B [Streptomyces avermitilis MA-4680] Length = 177 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 + + +K+V+ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + +++D + + + Sbjct: 15 ASGKVKDGKRKIVAQNKKARHDYAIIDTYEAGLVLTGTEVKSLRQGRASLTDGFVQIDGN 74 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL N++IPEY Q NH RR RKLLL + EI +L + G T+VP+ +YF G Sbjct: 75 EAWLHNAHIPEYSQGTWTNHTVRRKRKLLLHREEIDKLASKSEETGHTIVPLALYFKD-G 133 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 AK ++ALA+GKK YDKR+T +++ R+ R + Sbjct: 134 RAKAEIALARGKKEYDKRQTLREKQDRRESDRAI 167 >gi|315657056|ref|ZP_07909941.1| SsrA-binding protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492448|gb|EFU82054.1| SsrA-binding protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 201 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KKV++ N+KA ++Y + S+EAG+ LTGTEVK+LR+ + ++S+++ + E W Sbjct: 44 KAESDAKKVIARNKKAAHDYFLEDSYEAGLSLTGTEVKALRMGRASLSEAWVEVDRGEAW 103 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IPEY + NH P+R RKLLL KREI +L AV G T+VP+++YF G AK Sbjct: 104 LQGANIPEYFYGSWTNHAPKRKRKLLLHKREIIKLEGAVAAKGYTIVPVELYFVG-GRAK 162 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++A+A+GK+ +DKR+T ++R+ DR+ R LRE N Sbjct: 163 VEIAVAKGKQEWDKRQTIRQREDDREAQRALREAN 197 >gi|313895989|ref|ZP_07829543.1| SsrA-binding protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975414|gb|EFR40875.1| SsrA-binding protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 157 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N K+ +NRKAR++Y I ++EAG+ L GTEVKSLR + N+ DSYA +N E++L Sbjct: 3 KKNESVKIACENRKARHDYFIHETYEAGMELVGTEVKSLRAGRANLRDSYAYIKNGEVFL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF G AK+ Sbjct: 63 DHMHISPYEQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-HGRAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK NYDKR+T K + R+ + L+E Sbjct: 122 ELALASGKHNYDKRQTLKAKTAKREVEQALKER 154 >gi|198282594|ref|YP_002218915.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666519|ref|YP_002424784.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 23270] gi|198247115|gb|ACH82708.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518732|gb|ACK79318.1| SsrA-binding protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 153 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 60/145 (41%), Positives = 94/145 (64%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NR+A++ Y I FEAG+VL G EVKSLR +++ + DSY +N E+WL ++I Sbjct: 4 TIALNREAKHEYFIEERFEAGMVLQGWEVKSLRANRLTLKDSYIIVKNAELWLLGAHISP 63 Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + N P R RKLL+ + +I+R+ +V R G T+VP+ +Y+ G AK+++AL + Sbjct: 64 LPTASTHINPDPTRTRKLLMHREQINRMIGSVERKGFTIVPLAMYWKQ-GRAKVEIALVK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GK+ +DKR T K R+W R K RI++ Sbjct: 123 GKQEHDKRATVKDREWQRDKARIMK 147 >gi|113868014|ref|YP_726503.1| SsrA-binding protein [Ralstonia eutropha H16] gi|122946822|sp|Q0KA36|SSRP_RALEH RecName: Full=SsrA-binding protein gi|113526790|emb|CAJ93135.1| tmRNA-binding protein small potein B [Ralstonia eutropha H16] Length = 150 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I +EAGIVL G EVK++R +V I + Y + E++L ++I Sbjct: 2 TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + N P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+ Sbjct: 62 LQSASTHVNPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKRETEK+RDW R+K RI++ Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145 >gi|320530929|ref|ZP_08031962.1| SsrA-binding protein [Selenomonas artemidis F0399] gi|320136794|gb|EFW28743.1| SsrA-binding protein [Selenomonas artemidis F0399] Length = 157 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N K+ +NRKAR++Y I ++EAG+ L GTEVKSLR + N+ DSYA +N E++L Sbjct: 3 KKNESVKIACENRKARHDYFIHETYEAGMELVGTEVKSLRAGRANLRDSYAYIKNGEVFL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF +G AK+ Sbjct: 63 DHMHISPYEQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-RGRAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK NYDKR+T K + R+ + L+E Sbjct: 122 ELALASGKHNYDKRQTLKAKTAKREVEQALKER 154 >gi|182438354|ref|YP_001826073.1| SsrA-binding protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|239988113|ref|ZP_04708777.1| SsrA-binding protein [Streptomyces roseosporus NRRL 11379] gi|291445094|ref|ZP_06584484.1| SmpB protein [Streptomyces roseosporus NRRL 15998] gi|326779005|ref|ZP_08238270.1| SsrA-binding protein [Streptomyces cf. griseus XylebKG-1] gi|178466870|dbj|BAG21390.1| putative small protein B [Streptomyces griseus subsp. griseus NBRC 13350] gi|291348041|gb|EFE74945.1| SmpB protein [Streptomyces roseosporus NRRL 15998] gi|326659338|gb|EGE44184.1| SsrA-binding protein [Streptomyces cf. griseus XylebKG-1] Length = 162 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 99/148 (66%), Gaps = 1/148 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +K+++ N+KAR++Y I+ ++E G+VL GTEVKSLR+ + ++ D + ++ E Sbjct: 1 MAKEKDTGRKMIAQNKKARHDYTILDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDDHE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N ++PEY+Q NH +R RKLLL + EI +L + + G T+VP+ +YF G Sbjct: 61 AWLHNIHVPEYVQGTWTNHAAKRKRKLLLHRAEIDKLESKSQETGHTIVPLALYFKD-GR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQ 150 K+++ALA+GKK YDKR+T +++ R+ Sbjct: 120 VKVEIALAKGKKEYDKRQTLREKQDTRE 147 >gi|32033509|ref|ZP_00133836.1| COG0691: tmRNA-binding protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208343|ref|YP_001053568.1| SsrA-binding protein [Actinobacillus pleuropneumoniae L20] gi|190150195|ref|YP_001968720.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303251273|ref|ZP_07337451.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252865|ref|ZP_07339024.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247855|ref|ZP_07529891.1| hypothetical protein appser2_8440 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250108|ref|ZP_07532070.1| hypothetical protein appser4_8940 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307252494|ref|ZP_07534390.1| hypothetical protein appser6_10110 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256920|ref|ZP_07538698.1| hypothetical protein appser10_9240 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261352|ref|ZP_07543027.1| hypothetical protein appser12_9180 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263533|ref|ZP_07545148.1| hypothetical protein appser13_9490 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|166222354|sp|A3N0M7|SSRP_ACTP2 RecName: Full=SsrA-binding protein gi|238692393|sp|B3H1K6|SSRP_ACTP7 RecName: Full=SsrA-binding protein gi|126097135|gb|ABN73963.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|189915326|gb|ACE61578.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302648295|gb|EFL78492.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649815|gb|EFL79993.1| SsrA-binding protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306855657|gb|EFM87824.1| hypothetical protein appser2_8440 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857839|gb|EFM89933.1| hypothetical protein appser4_8940 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860086|gb|EFM92103.1| hypothetical protein appser6_10110 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306864654|gb|EFM96559.1| hypothetical protein appser10_9240 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869083|gb|EFN00885.1| hypothetical protein appser12_9180 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871176|gb|EFN02905.1| hypothetical protein appser13_9490 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 159 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+ Sbjct: 61 AFLFGATITPLNMASTHIVCDPTRTRKLLLNKRELDSLFGKVNRDGMTVVALSLYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKVGVAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157 >gi|283778267|ref|YP_003369022.1| SsrA-binding protein [Pirellula staleyi DSM 6068] gi|283436720|gb|ADB15162.1| SsrA-binding protein [Pirellula staleyi DSM 6068] Length = 179 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 103/151 (68%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +PP +V++NRKAR+NY I+ S E GI L G+EVKSLR K+++ ++YA ++ ++WL Sbjct: 28 DPPVTLVAENRKARFNYEILDSLECGIQLVGSEVKSLRDGKLSLDEAYARIKDGDVWLVG 87 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 + I EY QA+ +NH P+R RKLL+ K+++ + G+TLVP+K+YF +G+AK+ + Sbjct: 88 ADIAEYKQASIWNHAPKRPRKLLMHKQQMRKFAGTSHDKGLTLVPLKVYFTERGIAKVVI 147 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +GKK +DKRET KK D R R R+ Sbjct: 148 GLCRGKKLHDKRETLKKNDAKRDISRAFRKK 178 >gi|183602515|ref|ZP_02963880.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|219683560|ref|YP_002469943.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis AD011] gi|241190589|ref|YP_002967983.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195995|ref|YP_002969550.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218156|gb|EDT88802.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis HN019] gi|219621210|gb|ACL29367.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis AD011] gi|240248981|gb|ACS45921.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250549|gb|ACS47488.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178328|gb|ADC85574.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis BB-12] gi|295793576|gb|ADG33111.1| SsrA-binding protein [Bifidobacterium animalis subsp. lactis V9] Length = 163 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61 + + +K+++ NR+AR++Y I ++EAG+ LTGTEVKSLR + ++++S+ + Sbjct: 1 MAKKEQSNEKMIAQNRRARHDYEIEDTYEAGLALTGTEVKSLREGRASLAESFISIDKRG 60 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E+WL + IPEYL NH P+R RKLLL +I +L ++ G T+VP+++YFN G Sbjct: 61 EVWLEGANIPEYLNGTWNNHAPKRKRKLLLHGAQIDKLRRQIQAKGYTIVPLQLYFNEDG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ +ALA+GKK YDKR+ ++ R+ R++R N Sbjct: 121 RAKLKIALARGKKEYDKRQALREEQDKREALRMMRYKN 158 >gi|196249335|ref|ZP_03148033.1| SsrA-binding protein [Geobacillus sp. G11MC16] gi|187611499|sp|A4ISN8|SSRP_GEOTN RecName: Full=SsrA-binding protein gi|196211092|gb|EDY05853.1| SsrA-binding protein [Geobacillus sp. G11MC16] Length = 155 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I Sbjct: 7 KVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ R+ R RE Sbjct: 126 GKKKYDKREDMKRKEAQREIERAFRER 152 >gi|210631262|ref|ZP_03296824.1| hypothetical protein COLSTE_00709 [Collinsella stercoris DSM 13279] gi|210160087|gb|EEA91058.1| hypothetical protein COLSTE_00709 [Collinsella stercoris DSM 13279] Length = 161 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 92/155 (59%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KK+++ NR A + Y I +FE G+ L GTEV+SLR I+DS+A N E W Sbjct: 6 PKPRKEKKLIAKNRSAHHEYFIDETFECGLELAGTEVRSLRERACQITDSFALIRNGECW 65 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y + FN P R RKLLL +++I L +R G+ LVP+++YFN G K Sbjct: 66 LYNVHIHPYSNGSIFNRDPDRRRKLLLHRKQIDYLDGKLRTRGVALVPLELYFNEDGRVK 125 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + L L +GKK YDKRE KRD R+ R L++ + Sbjct: 126 LLLGLGRGKKLYDKREDMAKRDMQREIDRALKQRS 160 >gi|225018612|ref|ZP_03707804.1| hypothetical protein CLOSTMETH_02562 [Clostridium methylpentosum DSM 5476] gi|224948606|gb|EEG29815.1| hypothetical protein CLOSTMETH_02562 [Clostridium methylpentosum DSM 5476] Length = 156 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KK+++ NRKAR++Y + SFEAGI L GTEVKSLR VN+ DS+ E EI++ + Sbjct: 6 GKKIIALNRKARHDYFVEESFEAGIELVGTEVKSLRKGAVNLKDSFCYIEQGEIFVHGMH 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q N FN P R RKLL+ K+EI RL+ V++ G +L+P+ +YF + K++L L Sbjct: 66 ISPYEQGNIFNKDPIRIRKLLMHKKEIARLFGQVKQQGYSLIPLSLYFKSS-RVKLELGL 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKR KRD R+ R ++E + Sbjct: 125 CKGKKLYDKRADAAKRDAKREMSRAIKERS 154 >gi|22299470|ref|NP_682717.1| SsrA-binding protein [Thermosynechococcus elongatus BP-1] gi|30173266|sp|Q8DHM0|SSRP_THEEB RecName: Full=SsrA-binding protein gi|22295653|dbj|BAC09479.1| ssrA-binding protein [Thermosynechococcus elongatus BP-1] Length = 152 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 98/151 (64%), Gaps = 2/151 (1%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KV+S+NR+AR+ Y I+ ++E G+VL GTEVKS+R KVN+ D +A N E WL N Sbjct: 3 DSIKVLSENRQARFQYEILETYECGLVLLGTEVKSIRAGKVNLRDGFARIRNGEAWLMNV 62 Query: 69 YIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + N +NH P R+RKLLL K+EI +L V + G+TLVP+K+Y G K+ L Sbjct: 63 HISPHESTNPSYNHDPLRDRKLLLHKQEIRKLVGKVEQKGLTLVPLKLYLK-NGRVKVSL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK +DKR+ K+R R+ R +++ Sbjct: 122 GLARGKKLHDKRQDLKQRQDKREMERAMKQR 152 >gi|237747460|ref|ZP_04577940.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS] gi|229378811|gb|EEO28902.1| tmRNA-binding protein SmpB [Oxalobacter formigenes HOxBLS] Length = 149 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I FEAG+ L G EVKS+R +V + ++Y ++ EI+L ++I Sbjct: 2 TIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKSGEIFLFGAHISP 61 Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R+RKLL+ EI +L V R G TLVP+ ++F+ KG K ++ LA+ Sbjct: 62 LPTASTHIRPDPVRDRKLLMHASEIGKLIGKVERAGYTLVPLNLHFS-KGRIKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRETEK+RDW R++ +I++++ Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQN 147 >gi|17546143|ref|NP_519545.1| SsrA-binding protein [Ralstonia solanacearum GMI1000] gi|22096162|sp|Q8XZH1|SSRP_RALSO RecName: Full=SsrA-binding protein gi|17428439|emb|CAD15126.1| probable ssra-binding protein [Ralstonia solanacearum GMI1000] gi|299067480|emb|CBJ38679.1| RNA-binding protein, component of the SsrA quality-control system [Ralstonia solanacearum CMR15] Length = 148 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y + +EAGI L G EVK++R +V I + Y + E++L ++I Sbjct: 2 TIADNKKAFFDYFVEERYEAGIALEGWEVKAIRAGRVQIKEGYVVIRDAELFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLL EI +L V + G TLVP+ +++ A+G K ++ LA+ Sbjct: 62 LQSASTHVKPDPTRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHY-ARGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRETEK RDW R+K R++RE Sbjct: 121 GKKLYDKRETEKDRDWQREKARLMREK 147 >gi|320103367|ref|YP_004178958.1| SsrA-binding protein [Isosphaera pallida ATCC 43644] gi|319750649|gb|ADV62409.1| SsrA-binding protein [Isosphaera pallida ATCC 43644] Length = 178 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 1/154 (0%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K+ KVV+ NR+AR+ Y ++ EAG+VLTGTEVKSLR K N+ DSYA + +E+ Sbjct: 25 KADEAAGIKVVARNRRARFEYDLLEKIEAGLVLTGTEVKSLRNGKANLEDSYAMLDREEL 84 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL + IPEYLQANR NH P+R+RKLLL +REI+RL + G+T+VP+ IYF G+A Sbjct: 85 WLHGADIPEYLQANRMNHKPKRSRKLLLHRREINRLASKTAERGLTIVPLSIYFK-NGIA 143 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++A+A+G+K YDKR+ K++D R R LR Sbjct: 144 KVEIAVARGRKLYDKRQALKEQDAKRDIDRALRR 177 >gi|317473584|ref|ZP_07932873.1| SsrA-binding protein [Anaerostipes sp. 3_2_56FAA] gi|316898874|gb|EFV20899.1| SsrA-binding protein [Anaerostipes sp. 3_2_56FAA] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + K++++N+KAR++Y + + EAGIVL GTEVKS+R +I +++ + +N E Sbjct: 1 MNMAKTGGTKLIANNKKARHDYFVEETVEAGIVLFGTEVKSMRQGHCSIKEAFISIDNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +++ +I Y + N FN P R RKLL+ EI R+ + V R G TL+P+++YF L Sbjct: 61 VFVKQMHISPYEKGNIFNKDPLRERKLLMHSSEITRMMSEVNRKGYTLIPLRVYFKGS-L 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ L +GKK YDKR+ K+D R+ R + N Sbjct: 120 VKVEIGLCRGKKLYDKRQDIAKKDQQREAMRDFKVRN 156 >gi|257054831|ref|YP_003132663.1| SsrA-binding protein [Saccharomonospora viridis DSM 43017] gi|256584703|gb|ACU95836.1| SsrA-binding protein [Saccharomonospora viridis DSM 43017] Length = 160 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 100/155 (64%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +KV+ NR+AR++Y IV ++EAG+ L GTEVKSLR K +++DS+AT ++ Sbjct: 1 MAK----ENGRKVIVSNRRARHDYTIVDTYEAGVALVGTEVKSLRAGKASLADSFATVDD 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L +IPEY NH PRR RKLLL +REI +L + G +L+P+ +YF Sbjct: 57 GEVFLRGLHIPEYSHGTWTNHEPRRTRKLLLHRREIEKLIGKTKESGYSLIPLSLYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G K++LAL +G+K YDKR+ KRD R+ R + Sbjct: 116 GKVKVELALGKGRKAYDKRQAIAKRDAQREMARAM 150 >gi|319787261|ref|YP_004146736.1| SsrA-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317465773|gb|ADV27505.1| SsrA-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 171 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 103/159 (64%), Gaps = 2/159 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 KS+ P + ++ N++A++ YH+V FEAG+ L G EVK++R + N++D YA ++ Sbjct: 11 KAKSKAEPATRTIALNKRAKFEYHLVERFEAGLALQGWEVKAIRAGRANLTDGYAYVQDG 70 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI+L + + +Q + RR RKLLL + EI +L V+RDG T+VP +Y+ Sbjct: 71 EIYLIGAQVTPLIQASTHVVANDRRTRKLLLHRHEIDKLIGGVQRDGYTIVPTAMYWKGN 130 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GK+ +DKR+T K+RDW R+K R++R HN Sbjct: 131 -KVKLEIALAKGKQEHDKRDTAKERDWQREKQRVMRRHN 168 >gi|257453942|ref|ZP_05619218.1| SsrA-binding protein [Enhydrobacter aerosaccus SK60] gi|257448607|gb|EEV23574.1| SsrA-binding protein [Enhydrobacter aerosaccus SK60] Length = 156 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +++ N+KAR+ Y I SFEAG+ L G EVKS+R K+ I++SY F + Sbjct: 1 MTKKPKMPS---LIASNKKARHEYFIEESFEAGLELLGWEVKSIRAGKMRITESYVIFRD 57 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L ++I P + P R RKLLL +REI +L+ V + G T V +K+Y++ Sbjct: 58 GEAFLFGAHIQPLLSASTHIVADPLRTRKLLLHRREIDKLFGMVNQKGHTCVALKVYWS- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K ++ALA+GKK +DKR T K+RD+ R+K R L+ Sbjct: 117 HGRVKCEIALAKGKKLHDKRATLKERDYQREKQRGLKN 154 >gi|294649583|ref|ZP_06727002.1| SsrA-binding protein [Acinetobacter haemolyticus ATCC 19194] gi|292824522|gb|EFF83306.1| SsrA-binding protein [Acinetobacter haemolyticus ATCC 19194] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 91/150 (60%), Gaps = 2/150 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+N E +L Sbjct: 8 KKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYVIFKNGEAFLF 67 Query: 67 NSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 S I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ L K+ Sbjct: 68 GSQIQPLLSASTHVVPEATRTRKLLLSRRELEKLLGAVNQKGYSCVPLACYWKGP-LVKL 126 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 ++AL +GK+ +DKR TEK RDW R K R+L Sbjct: 127 EIALVKGKQLHDKRATEKDRDWQRDKARML 156 >gi|262280055|ref|ZP_06057840.1| ssrA-binding protein [Acinetobacter calcoaceticus RUH2202] gi|262260406|gb|EEY79139.1| ssrA-binding protein [Acinetobacter calcoaceticus RUH2202] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%) Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++ +++SY F+ Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMTLTESYVIFK 60 Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L S I P + R RKLLLS+R++ L AV + G + VP+ Y+ Sbjct: 61 NSEAFLLGSQIQPLLSASTHVVPEATRTRKLLLSRRQLEHLMGAVNQKGYSCVPLACYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K+++AL +GK+ +DKR TEK RDW R K RI Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156 >gi|56551617|ref|YP_162456.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761258|ref|ZP_04759346.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752791|ref|YP_003225684.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|61216412|sp|Q5NPL5|SSRP_ZYMMO RecName: Full=SsrA-binding protein gi|56543191|gb|AAV89345.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374165|gb|EER63662.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552154|gb|ACV75100.1| SsrA-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 160 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 78/150 (52%), Positives = 111/150 (74%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K++++NR+ARY Y +EAG+ LTGTEVKSLR + +I++SYA +N E+ L N+ Sbjct: 10 KKSKILAENRRARYEYAFEDFYEAGLALTGTEVKSLRFGQGSIAESYAEVKNGEVTLINA 69 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 IPE+ NRFNH P+R RKLLL +REI ++ AV R+GMT++P+ +YFN KG AK++LA Sbjct: 70 NIPEFSHGNRFNHEPKRPRKLLLHEREIRKMQTAVSREGMTVIPVSLYFNNKGKAKLELA 129 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKK +DKR T K+RDW R + R+LR+ Sbjct: 130 IARGKKTHDKRATIKERDWKRDQARLLRDK 159 >gi|83749957|ref|ZP_00946911.1| SsrA-binding protein [Ralstonia solanacearum UW551] gi|207723377|ref|YP_002253776.1| ssra-binding protein [Ralstonia solanacearum MolK2] gi|207743221|ref|YP_002259613.1| ssra-binding protein [Ralstonia solanacearum IPO1609] gi|300704211|ref|YP_003745814.1| RNA-binding protein, component of the ssra quality-control system [Ralstonia solanacearum CFBP2957] gi|83723376|gb|EAP70600.1| SsrA-binding protein [Ralstonia solanacearum UW551] gi|206588576|emb|CAQ35539.1| ssra-binding protein [Ralstonia solanacearum MolK2] gi|206594618|emb|CAQ61545.1| ssra-binding protein [Ralstonia solanacearum IPO1609] gi|299071875|emb|CBJ43204.1| RNA-binding protein, component of the SsrA quality-control system [Ralstonia solanacearum CFBP2957] Length = 148 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 92/147 (62%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++N+KA ++Y I +EAGI L G EVK++R ++V I + Y + E++L ++I Sbjct: 2 TIAENKKAFFDYFIEERYEAGIALEGWEVKAIRANRVQIKEGYVVIRDAELFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLL EI +L V + G TLVP+ +++ A+G K ++ LA+ Sbjct: 62 LQSASTHVKPDPTRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHY-ARGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRETEK RDW R+K R++RE Sbjct: 121 GKKLYDKRETEKDRDWQREKARLMREK 147 >gi|220910218|ref|YP_002485529.1| SsrA-binding protein [Cyanothece sp. PCC 7425] gi|219866829|gb|ACL47168.1| SsrA-binding protein [Cyanothece sp. PCC 7425] Length = 157 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 73/155 (47%), Positives = 102/155 (65%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ + K+VSDNR+AR+ Y I+ ++EAG+ LTGTEVKS+R KVN+ D +A N E+ Sbjct: 4 SQKSESYKIVSDNRQARFLYEILETYEAGVSLTGTEVKSIRAGKVNLRDGFALIRNGEVV 63 Query: 65 LTNSYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I + + FNH PRR RKLLL + EI +L V + G+TLVP+K+Y +G Sbjct: 64 LMNVHISPHQTTGQAFNHDPRRTRKLLLHREEIRKLIGKVEQKGLTLVPLKMYLK-RGWV 122 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+D+ALA+GKK YDKRE K+R R R ++ Sbjct: 123 KVDIALARGKKLYDKREDLKQRQDKRDMERAMKNR 157 >gi|118579742|ref|YP_900992.1| SsrA-binding protein [Pelobacter propionicus DSM 2379] gi|166223236|sp|A1ANL4|SSRP_PELPD RecName: Full=SsrA-binding protein gi|118502452|gb|ABK98934.1| SsrA-binding protein [Pelobacter propionicus DSM 2379] Length = 152 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I EAG+VL GTEVKSLR K N++DS+ + E +L N + Sbjct: 2 GEKLICNNKKAYHDYFIEEKMEAGLVLLGTEVKSLRAGKANLNDSFMLVRDGEAFLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH RNRKLLL +++I RLY +R G ++VP+++YF GL K+++ L Sbjct: 62 ISPYEFGNRQNHQADRNRKLLLHRKQIDRLYGRIREQGYSIVPLRMYFKD-GLVKVEIGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R+ + L+ N Sbjct: 121 AKGKKLYDKREDMKKKDSQRELSQALKSKN 150 >gi|299771328|ref|YP_003733354.1| SsrA-binding protein [Acinetobacter sp. DR1] gi|298701416|gb|ADI91981.1| SsrA-binding protein [Acinetobacter sp. DR1] Length = 158 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 3/157 (1%) Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++ +++SY F+ Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMTLTESYVIFK 60 Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L S I P + R RKLLLS+R++ L AV + G + VP+ Y+ Sbjct: 61 NGEAFLLGSQIQPLLSASTHVVPEATRTRKLLLSRRQLEHLMGAVNQKGYSCVPLACYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K+++AL +GK+ +DKR TEK RDW R K RI Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156 >gi|302544940|ref|ZP_07297282.1| SsrA-binding protein [Streptomyces hygroscopicus ATCC 53653] gi|302462558|gb|EFL25651.1| SsrA-binding protein [Streptomyces himastatinicus ATCC 53653] Length = 161 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 67/155 (43%), Positives = 103/155 (66%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ N+KAR++YHI+ ++E G+VLTGTEVKSLR + +++D +A +N Sbjct: 1 MAK----ETGRKLIAQNKKARHDYHIIDTYECGLVLTGTEVKSLRQGRASLADGFAQLDN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N +IPEY Q NH RR RKLLL + EI +L + G T+VP+ +YF Sbjct: 57 GEAWLHNVHIPEYSQGTWTNHSARRRRKLLLHRAEIDKLVHKTQETGHTIVPLSLYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK+YDKR+ +++ R+ R + Sbjct: 116 GRAKVEVALAKGKKDYDKRQALREKQDRRETDRAI 150 >gi|226365875|ref|YP_002783658.1| SsrA-binding protein [Rhodococcus opacus B4] gi|226244365|dbj|BAH54713.1| SsrA-binding protein [Rhodococcus opacus B4] Length = 157 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 74/156 (47%), Positives = 103/156 (66%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +KV++ NRKAR+NY I+ +EAGI L GTEVKSLR K ++ D++AT ++ E Sbjct: 1 MKEK---GRKVIATNRKARHNYTILDVYEAGIALVGTEVKSLREGKASLVDAFATVDDGE 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL + +IPEY Q NH PRR RKLLL KREI L R TLVP+ +YF+ G Sbjct: 58 VWLRSLHIPEYTQGTWTNHSPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFSD-GK 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK++YDKR+ +R +R+ R L Sbjct: 117 VKVELALAKGKQDYDKRQDLARRTAEREVTRELGRR 152 >gi|84683963|ref|ZP_01011865.1| SsrA-binding protein [Maritimibacter alkaliphilus HTCC2654] gi|84667716|gb|EAQ14184.1| SsrA-binding protein [Rhodobacterales bacterium HTCC2654] Length = 161 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ N KV+++NR+AR++Y I E GIVL G+EVKSLRV+ NI++SYA E+ Sbjct: 4 MA-KTDENKNYKVIAENRRARFDYAIEDDLEVGIVLEGSEVKSLRVNSANIAESYAAVED 62 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N YI Y QA F H RR RKLL SK+E+ RL+ +R GMT+VP+ +YFN + Sbjct: 63 GELWLVNGYIAPYEQAKTFGHEERRRRKLLCSKKELARLWNDTQRKGMTIVPLVLYFNHR 122 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G+AK+ + +A+GKK +DKR K+DW+RQK R+L++ Sbjct: 123 GIAKMKVGIAKGKKVHDKRADTAKKDWNRQKQRLLKQ 159 >gi|298346508|ref|YP_003719195.1| tmRNA-binding protein [Mobiluncus curtisii ATCC 43063] gi|304389753|ref|ZP_07371712.1| SsrA-binding protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236569|gb|ADI67701.1| tmRNA-binding protein [Mobiluncus curtisii ATCC 43063] gi|304326929|gb|EFL94168.1| SsrA-binding protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 201 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 107/155 (69%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KKV++ N+KA ++Y + S+EAG+ LTGTEVK+LR+ + ++S+++ + E W Sbjct: 44 KAESDAKKVIARNKKAAHDYFLEDSYEAGLSLTGTEVKALRMGRASLSEAWVEVDRGEAW 103 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IPEY + NH P+R RKLLL KREI +L AV G T+VP+++YF G AK Sbjct: 104 LQGANIPEYFYGSWTNHAPKRKRKLLLHKREIIKLEGAVAAKGYTIVPVELYFVG-GRAK 162 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++A+A+GK+ +DKR+T ++R+ DR+ R LRE N Sbjct: 163 VEIAVAKGKQEWDKRQTIRQREDDREAQRALREAN 197 >gi|222099406|ref|YP_002533974.1| SsrA-binding protein [Thermotoga neapolitana DSM 4359] gi|221571796|gb|ACM22608.1| SsrA-binding protein [Thermotoga neapolitana DSM 4359] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 72/145 (49%), Positives = 105/145 (72%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F++ E++L N +IP Sbjct: 11 KIVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKDGELYLLNLHIP 70 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+ Sbjct: 71 PYSHGGIHNHDPERPRKLLLHKRELKRLMGKVQEEGITIVPLKIYFNDRGIAKVEIAVAR 130 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 G+K YDKRE K+R+ +R+ ++ Sbjct: 131 GRKKYDKREAIKRREMERKIREYMK 155 >gi|169796971|ref|YP_001714764.1| SsrA-binding protein [Acinetobacter baumannii AYE] gi|184157117|ref|YP_001845456.1| SsrA-binding protein [Acinetobacter baumannii ACICU] gi|213156624|ref|YP_002318285.1| SsrA-binding protein [Acinetobacter baumannii AB0057] gi|215484432|ref|YP_002326665.1| SsrA-binding protein [Acinetobacter baumannii AB307-0294] gi|239501202|ref|ZP_04660512.1| SsrA-binding protein [Acinetobacter baumannii AB900] gi|260553986|ref|ZP_05826251.1| tmRNA-binding protein [Acinetobacter sp. RUH2624] gi|260555738|ref|ZP_05827958.1| SsrA-binding protein [Acinetobacter baumannii ATCC 19606] gi|294839939|ref|ZP_06784622.1| SsrA-binding protein [Acinetobacter sp. 6013113] gi|294842374|ref|ZP_06787057.1| SsrA-binding protein [Acinetobacter sp. 6014059] gi|294858053|ref|ZP_06795822.1| SsrA-binding protein [Acinetobacter sp. 6013150] gi|301346832|ref|ZP_07227573.1| SsrA-binding protein [Acinetobacter baumannii AB056] gi|301510802|ref|ZP_07236039.1| SsrA-binding protein [Acinetobacter baumannii AB058] gi|301594456|ref|ZP_07239464.1| SsrA-binding protein [Acinetobacter baumannii AB059] gi|226734240|sp|B7GYP8|SSRP_ACIB3 RecName: Full=SsrA-binding protein gi|226734241|sp|B7I7Q2|SSRP_ACIB5 RecName: Full=SsrA-binding protein gi|238685495|sp|A3M2Y4|SSRP_ACIBT RecName: Full=SsrA-binding protein gi|238688123|sp|B0V8G6|SSRP_ACIBY RecName: Full=SsrA-binding protein gi|238690976|sp|B2HUN4|SSRP_ACIBC RecName: Full=SsrA-binding protein gi|169149898|emb|CAM87791.1| ssrA-binding protein (Small protein B) [Acinetobacter baumannii AYE] gi|183208711|gb|ACC56109.1| tmRNA-binding protein [Acinetobacter baumannii ACICU] gi|193076606|gb|ABO11278.2| ssrA-binding protein (Small protein B) [Acinetobacter baumannii ATCC 17978] gi|213055784|gb|ACJ40686.1| SsrA-binding protein [Acinetobacter baumannii AB0057] gi|213988008|gb|ACJ58307.1| SsrA-binding protein [Acinetobacter baumannii AB307-0294] gi|260404872|gb|EEW98377.1| tmRNA-binding protein [Acinetobacter sp. RUH2624] gi|260410649|gb|EEX03947.1| SsrA-binding protein [Acinetobacter baumannii ATCC 19606] gi|322507015|gb|ADX02469.1| smpB [Acinetobacter baumannii 1656-2] gi|323516883|gb|ADX91264.1| SsrA-binding protein [Acinetobacter baumannii TCDC-AB0715] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 94/157 (59%), Gaps = 3/157 (1%) Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+ Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLLGWEVKSLRAGRMSLTESYVIFK 60 Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L + I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ Sbjct: 61 NGEAFLFGAQIQPLLSASTHIVPEATRTRKLLLSRRELEKLMGAVNQKGYSCVPLACYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K+++AL +GK+ +DKR TEK+RDW R K RI Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKERDWQRDKARIF 156 >gi|325920208|ref|ZP_08182163.1| SsrA-binding protein [Xanthomonas gardneri ATCC 19865] gi|325549294|gb|EGD20193.1| SsrA-binding protein [Xanthomonas gardneri ATCC 19865] Length = 167 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 103/165 (62%), Gaps = 7/165 (4%) Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y Sbjct: 1 MSKKPAKDKANGATATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIIDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q ++ RR+RKLLL +REI ++ ++V RDG TLVP Sbjct: 61 AYVRSGEIFLIGAQITPLIQASSHTVPVERRDRKLLLHRREIDKVLSSVERDGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN Sbjct: 121 LYWS-NNKVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164 >gi|254386624|ref|ZP_05001921.1| SsrA-binding protein [Streptomyces sp. Mg1] gi|194345466|gb|EDX26432.1| SsrA-binding protein [Streptomyces sp. Mg1] Length = 161 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++E G+VLTGTEVKSLR + ++ D + + E+ Sbjct: 1 MAKEK----GRKLIAQNKKARHDYTIIDTYECGLVLTGTEVKSLRQGRASLVDGFVSVES 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + G T+VP+ +YF Sbjct: 57 GEAWLYNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLDSKTGETGNTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+ +++ R+ +R++ Sbjct: 116 GRAKVEIALAKGKKEYDKRQALREKQDTRETNRVI 150 >gi|118617899|ref|YP_906231.1| SsrA-binding protein [Mycobacterium ulcerans Agy99] gi|166223230|sp|A0PQZ1|SSRP_MYCUA RecName: Full=SsrA-binding protein gi|118570009|gb|ABL04760.1| ssRNA-binding protein SmpB [Mycobacterium ulcerans Agy99] Length = 168 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 73/164 (44%), Positives = 103/164 (62%), Gaps = 7/164 (4%) Query: 1 MSLKSRGNP------PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDS 54 M+ +S+ KK+++ NRKAR+NY I+ FEAG+ L GTEVKSLR ++ D+ Sbjct: 1 MAAQSKQAKPSGKQGGKKIIATNRKARHNYSIIEVFEAGVALQGTEVKSLRERHASLVDA 60 Query: 55 YATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 +AT ++ E+WL N +IPEYL NH PRRNRKLLL +R+I L+ +R LVP+ Sbjct: 61 FATVDDGEVWLRNLHIPEYLHGTWTNHEPRRNRKLLLHRRQIDTLFGKIREGNFALVPLS 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +YF G K++LALA+GK +DKR+ +RD R+ R L Sbjct: 121 MYFLD-GKVKVELALARGKHAHDKRQDLARRDAQREVIRELGRR 163 >gi|56752307|ref|YP_173008.1| SsrA-binding protein [Synechococcus elongatus PCC 6301] gi|81300604|ref|YP_400812.1| SsrA-binding protein [Synechococcus elongatus PCC 7942] gi|61216405|sp|Q5MZN2|SSRP_SYNP6 RecName: Full=SsrA-binding protein gi|123556624|sp|Q31M94|SSRP_SYNE7 RecName: Full=SsrA-binding protein gi|56687266|dbj|BAD80488.1| tmRNA binding protein SmpB [Synechococcus elongatus PCC 6301] gi|81169485|gb|ABB57825.1| SsrA-binding protein [Synechococcus elongatus PCC 7942] Length = 154 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 97/149 (65%), Gaps = 2/149 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KV+S+NR+AR+ Y I+ +FE GI L GTEVKS+R KVN+ D +A N E+WL N + Sbjct: 6 GIKVLSENRQARFQYEILETFETGIELLGTEVKSIRAGKVNLRDGFALVRNGEVWLHNIH 65 Query: 70 IPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I + QA+ +NH P R RKLL+ + EI +L V + G+TLVP+K+Y G K+ L Sbjct: 66 ISPHQQASAYYNHDPLRTRKLLMHREEIRKLIGKVEQKGLTLVPLKMYLKQ-GWVKVTLG 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L +GKK +DKRETE++R R R ++ Sbjct: 125 LGRGKKLHDKRETERRRQDQRDIQRAIKR 153 >gi|126734698|ref|ZP_01750444.1| SsrA-binding protein [Roseobacter sp. CCS2] gi|126715253|gb|EBA12118.1| SsrA-binding protein [Roseobacter sp. CCS2] Length = 157 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 2/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K N KV+++NR+ARY+Y I E GI+L G+EVKSLR + NI+DSYA+ ++ Sbjct: 1 MAKKP-ENKNYKVIAENRRARYDYAIEDDLEVGIILMGSEVKSLRTGQSNIADSYASVDD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WLTN+YI Y F H RR RKLL+S+RE+ RL+ A +R+GMTLVP+ +YFN + Sbjct: 60 GELWLTNAYIAPYD-RAMFTHEERRKRKLLVSRRELARLWNATKREGMTLVPLVMYFNDR 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 GL K+ +A A+GKKN+DKR TE KRDW RQK R+LR Sbjct: 119 GLVKLKIATAKGKKNHDKRATEAKRDWGRQKQRLLRH 155 >gi|71064901|ref|YP_263628.1| SsrA-binding protein [Psychrobacter arcticus 273-4] gi|123649644|sp|Q4FUW4|SSRP_PSYA2 RecName: Full=SsrA-binding protein gi|71037886|gb|AAZ18194.1| SsrA-binding protein [Psychrobacter arcticus 273-4] Length = 158 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P+ + N+KAR+ Y I +FEAG+ L G EVK++R K+ I+++Y F N+E Sbjct: 1 MSKKSKKPENQICANKKARHEYFIEETFEAGLSLQGWEVKAIRAGKMTITEAYIIFRNNE 60 Query: 63 IWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L ++I P + + R RKLLL++REI +L+ AV + G VP+ Y+ Sbjct: 61 AFLFGAHIQPLLSSSTHVSPDSIRTRKLLLNRREIEKLFGAVNQKGYACVPLSCYWK-NS 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K + LA GKK +DKR+T K RDW+R K R ++ Sbjct: 120 LVKCQIGLALGKKQHDKRKTLKDRDWERDKQRGFKK 155 >gi|49080964|gb|AAT50078.1| PA4768 [synthetic construct] Length = 160 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KA ++Y I + FEAG+ L G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKHPSG--TIAQNKKALHDYFIEQRFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL KRE+ +L+ AV++ G V + +Y+ Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLHKRELGKLFGAVQQKGYACVALSMYWKK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K ++ALA+GKK++DKR TEK+RD DR+ R +R Sbjct: 119 H-LVKCEIALAKGKKDFDKRHTEKERDSDREIQRAMRH 155 >gi|238788244|ref|ZP_04632039.1| hypothetical protein yfred0001_36940 [Yersinia frederiksenii ATCC 33641] gi|238723831|gb|EEQ15476.1| hypothetical protein yfred0001_36940 [Yersinia frederiksenii ATCC 33641] Length = 164 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 123 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + +A+GKK+ DKR+ + R+W K RI++ N Sbjct: 124 NAWTKIKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 163 >gi|138896634|ref|YP_001127087.1| SsrA-binding protein [Geobacillus thermodenitrificans NG80-2] gi|134268147|gb|ABO68342.1| tmRNA-binding protein [Geobacillus thermodenitrificans NG80-2] Length = 161 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I Sbjct: 13 KVIAQNKKARHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 72 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+ Sbjct: 73 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 131 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ R+ R RE Sbjct: 132 GKKKYDKREDMKRKEAQREIERAFRER 158 >gi|167039995|ref|YP_001662980.1| SsrA-binding protein [Thermoanaerobacter sp. X514] gi|256751959|ref|ZP_05492829.1| SsrA-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914085|ref|ZP_07131401.1| SsrA-binding protein [Thermoanaerobacter sp. X561] gi|307724682|ref|YP_003904433.1| SsrA-binding protein [Thermoanaerobacter sp. X513] gi|326389834|ref|ZP_08211398.1| SsrA-binding protein [Thermoanaerobacter ethanolicus JW 200] gi|254778388|sp|B0K718|SSRP_THEPX RecName: Full=SsrA-binding protein gi|166854235|gb|ABY92644.1| SsrA-binding protein [Thermoanaerobacter sp. X514] gi|256749164|gb|EEU62198.1| SsrA-binding protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889020|gb|EFK84166.1| SsrA-binding protein [Thermoanaerobacter sp. X561] gi|307581743|gb|ADN55142.1| SsrA-binding protein [Thermoanaerobacter sp. X513] gi|325994102|gb|EGD52530.1| SsrA-binding protein [Thermoanaerobacter ethanolicus JW 200] Length = 156 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 104/151 (68%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+++ N+KA ++Y I ++EAGIVL+GTEVKS+R+ KVN+ DS+A EN+E++L N Sbjct: 3 KEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GL K++L Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLVKVEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+A+GKK YDKRE +RD R+ + +E Sbjct: 122 AVARGKKLYDKREDIARRDAKRELEKHFKEK 152 >gi|260579722|ref|ZP_05847581.1| SsrA-binding protein [Corynebacterium jeikeium ATCC 43734] gi|258602152|gb|EEW15470.1| SsrA-binding protein [Corynebacterium jeikeium ATCC 43734] Length = 184 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + VV+ NRKAR++YHI+ ++E G+VL GTEVKSLR K ++ D+YAT + E+WL Sbjct: 27 QKGTGQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWL 86 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +IPEY + NH PRR RKLLL +REI L VR TLVP+++YF A G K+ Sbjct: 87 RGLHIPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVA-GKLKV 145 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA+GK+ YDKR+ K+R +R+ R + Sbjct: 146 ELALARGKQEYDKRQDIKRRTEEREITREMGRR 178 >gi|293609053|ref|ZP_06691356.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829626|gb|EFF87988.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325121174|gb|ADY80697.1| SsrA-binding protein [Acinetobacter calcoaceticus PHEA-2] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 3/157 (1%) Query: 1 MSLKSR-GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+ Sbjct: 1 MAKATVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLLGWEVKSLRAGRMSLTESYVIFK 60 Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L + I P + R RKLLLS+RE+ +L +V + G + VP+ Y+ Sbjct: 61 NGEAFLFGAQIQPLLSASTHVVPEATRTRKLLLSRRELEKLTGSVNQKGYSCVPLACYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K+++AL +GK+ +DKR TEK RDW R K RI Sbjct: 121 GH-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156 >gi|325677936|ref|ZP_08157578.1| SsrA-binding protein [Ruminococcus albus 8] gi|324110490|gb|EGC04664.1| SsrA-binding protein [Ruminococcus albus 8] Length = 157 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M++ + K ++DNRKAR++Y I+ + E GI L GTEVKS+R VN+ DS+ + ++ Sbjct: 1 MAIDKK---GTKQIADNRKARHDYFILETIECGIELVGTEVKSIRQGGVNLKDSWCSVDD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ +I Y N FN PRR RKLLL KREI RL+ V+++G+ L+P+ +YF Sbjct: 58 GEMWIKGMHISPYDHGNIFNKDPRRVRKLLLHKREIMRLFGQVQQEGLALIPLSLYFKGS 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L L +GKK +DKR+ K+ +R+ R L++ Sbjct: 118 -RVKVALGLCKGKKLHDKRDDMAKKAANREIERTLKDR 154 >gi|269795799|ref|YP_003315254.1| SsrA-binding protein [Sanguibacter keddieii DSM 10542] gi|269097984|gb|ACZ22420.1| SsrA-binding protein [Sanguibacter keddieii DSM 10542] Length = 176 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 102/154 (66%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + P + +++ N+KAR+++ I FEAG+VL+GTEVK+LR + ++ D Y E +E W Sbjct: 21 ASSGPVRALIASNKKARHDFAIEDVFEAGMVLSGTEVKALRAGRASLVDGYVNIEGNEAW 80 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L ++I EY NH PRR RKLLL + EI RL R G T+VP+++YF G AK Sbjct: 81 LEGAHISEYAHGTWTNHAPRRKRKLLLHRSEIERLAQGTREKGFTIVPLQMYFLD-GRAK 139 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ALA+GKK YDKR+T +++ +R+ HR +R+ Sbjct: 140 VEIALARGKKEYDKRQTLREQQDNREAHRAIRQR 173 >gi|300781766|ref|ZP_07091620.1| SsrA-binding protein [Corynebacterium genitalium ATCC 33030] gi|300533473|gb|EFK54534.1| SsrA-binding protein [Corynebacterium genitalium ATCC 33030] Length = 162 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + V++ NRKAR++Y I+ ++E GIVL GTE+KSLR K ++ +++AT +N Sbjct: 1 MAKKKKTD-GSNVIASNRKARHDYTILDTYETGIVLQGTEIKSLRDGKASLVEAFATIDN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N +IPEY + NH PRR RKLLL +REI L +R TLVP+K+Y Sbjct: 60 GEVWLRNLHIPEYSMGSWTNHSPRRTRKLLLHRREIDTLEGKLRDGNRTLVPLKLYLKE- 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++L LAQGK++YDKR K+R DR+ R L Sbjct: 119 GRVKVELGLAQGKQDYDKRRAIKQRTEDREITRDLGRK 156 >gi|262373257|ref|ZP_06066536.1| SsrA-binding protein [Acinetobacter junii SH205] gi|262313282|gb|EEY94367.1| SsrA-binding protein [Acinetobacter junii SH205] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 90/150 (60%), Gaps = 2/150 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 ++ N++AR++Y I FEAG+ L G EVKSLR ++ +S+SY F+N E +L Sbjct: 8 KKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMTLSESYVIFKNGEAFLF 67 Query: 67 NSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 S I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ L K+ Sbjct: 68 GSQIQPLLSASTHVVPESTRTRKLLLSRRELEKLLGAVNQKGYSCVPLACYWKGH-LVKL 126 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 ++AL +GK+ +DKR TEK RDW R K R+L Sbjct: 127 EIALVKGKQLHDKRATEKDRDWQRDKARML 156 >gi|254361094|ref|ZP_04977239.1| tmRNA-binding protein SmpB [Mannheimia haemolytica PHL213] gi|261493579|ref|ZP_05990099.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495417|ref|ZP_05991865.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str. OVINE] gi|153092580|gb|EDN73635.1| tmRNA-binding protein SmpB [Mannheimia haemolytica PHL213] gi|261308922|gb|EEY10177.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310761|gb|EEY11944.1| tmRNA-binding protein SmpB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 159 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 87/158 (55%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVK+LR K NISDSY F + E Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEDEIEAGLELQGWEVKALRAGKGNISDSYVIFRHGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL+KRE+ L+ V R+G T+V +Y+ Sbjct: 61 AFLFGAMITPLNMASTHIVSDPTRTRKLLLNKRELDSLFGKVNREGYTIVATSMYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + LA+GKK +DKRE K R+W K RI++ N Sbjct: 120 WVKVKIGLAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157 >gi|302560370|ref|ZP_07312712.1| SsrA-binding protein [Streptomyces griseoflavus Tu4000] gi|302477988|gb|EFL41081.1| SsrA-binding protein [Streptomyces griseoflavus Tu4000] Length = 159 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 64/155 (41%), Positives = 103/155 (66%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +K+++ N+KAR++Y I+ ++EAG+VLTGTEVKSLR + ++ D + ++ Sbjct: 1 MAKEK----GRKLIAQNKKARHDYLIIDTYEAGLVLTGTEVKSLRQGRASLVDGFVQLDD 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N ++PEY Q NH RR RKLLL + EI +L + + G T+VP+ +YF Sbjct: 57 HEAWLHNVHVPEYSQGTWTNHSARRKRKLLLHREEIDKLESKSQETGHTIVPLALYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G AK+++ALA+GKK YDKR+T +++ R+ + + Sbjct: 116 GRAKVEIALAKGKKEYDKRQTLREKQDRRETEKAI 150 >gi|73541550|ref|YP_296070.1| SsrA-binding protein [Ralstonia eutropha JMP134] gi|123624835|sp|Q470F7|SSRP_RALEJ RecName: Full=SsrA-binding protein gi|72118963|gb|AAZ61226.1| SsrA-binding protein [Ralstonia eutropha JMP134] Length = 150 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I FEAGIVL G EVK++R +V I + Y + E++L ++I Sbjct: 2 TIADNKKAFFDYFIEERFEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + N P R RKLLL EI +L V + G TLVP+ +++ +G K ++ L + Sbjct: 62 LQSASTHVNPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLGK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKRETEK+RDW R+K RI++ Sbjct: 121 GKKLFDKRETEKQRDWQREKSRIMK 145 >gi|254452749|ref|ZP_05066186.1| SsrA-binding protein [Octadecabacter antarcticus 238] gi|198267155|gb|EDY91425.1| SsrA-binding protein [Octadecabacter antarcticus 238] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 110/157 (70%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K NP KV+++NR+ARY++ I E GI+L G+EVKSLRV + NI+DSYAT Sbjct: 1 MAKKPDQNPNYKVIAENRRARYDFAIESDVECGIILAGSEVKSLRVGQSNIADSYATVAE 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H R RKLL+SKRE+ R+ A+ R+GMTLVP+ +YFN K Sbjct: 61 GELWLINSYIAPYQQAM-FPHEDRSRRKLLVSKRELVRMGNAISREGMTLVPLVMYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ +A+A+GK+ DKR TE RDW RQK R+LR Sbjct: 120 GRVKVKIAIAKGKQKQDKRATEAARDWGRQKARLLRH 156 >gi|307729351|ref|YP_003906575.1| SsrA-binding protein [Burkholderia sp. CCGE1003] gi|307583886|gb|ADN57284.1| SsrA-binding protein [Burkholderia sp. CCGE1003] Length = 148 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK+LR + I + Y +N E++L ++I Sbjct: 3 IIDNRKAFFDYSIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNGELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKLHDKRETEKKRDWEREKARLMR 145 >gi|89052522|ref|YP_507973.1| SsrA-binding protein [Jannaschia sp. CCS1] gi|122499900|sp|Q28WG4|SSRP_JANSC RecName: Full=SsrA-binding protein gi|88862071|gb|ABD52948.1| SsrA-binding protein [Jannaschia sp. CCS1] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 80/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K NP KV+++NR+AR++Y I E GI+L G+EVKSLR + NI++SYA + Sbjct: 1 MAKKP-DNPNYKVIAENRRARFDYAIESDLEVGIILEGSEVKSLRQGQSNIAESYAEVKE 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y+QA F H +R RK+L+S++E+ +L+ A +R+GMTLVP+ +YFN K Sbjct: 60 GELWLVNSYIAPYVQAKTFGHEEKRRRKMLVSRKELSKLWNATQREGMTLVPIVMYFNHK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K+ + +A+GKK DKRET KRDW+RQK R+L+++ Sbjct: 120 GLVKLKIGIAKGKKAQDKRETSAKRDWNRQKARLLKQN 157 >gi|154706819|ref|YP_001424745.1| SsrA-binding protein [Coxiella burnetii Dugway 5J108-111] gi|212212314|ref|YP_002303250.1| SsrA-binding protein [Coxiella burnetii CbuG_Q212] gi|189046824|sp|A9KGA3|SSRP_COXBN RecName: Full=SsrA-binding protein gi|226706521|sp|B6IZH7|SSRP_COXB2 RecName: Full=SsrA-binding protein gi|154356105|gb|ABS77567.1| SsrA-binding protein [Coxiella burnetii Dugway 5J108-111] gi|212010724|gb|ACJ18105.1| ssrA-binding protein [Coxiella burnetii CbuG_Q212] Length = 159 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 110/159 (69%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F+ Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKG 60 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +++ P+R+RKLLL+KREI +L+ AV++ G+T+VP+ ++++ Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158 >gi|330807460|ref|YP_004351922.1| SsrA-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375568|gb|AEA66918.1| SsrA-binding protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 160 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I + FEAG+VL G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEQRFEAGMVLAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+ + P R+RKLLL+KRE+ +L+A+V++ G T V +Y++ Sbjct: 59 GEAWLLGSHFTPLTTASTHVIADPTRSRKLLLNKRELEKLFASVQQKGYTCVCTSLYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR+TE++RD R+ R +R Sbjct: 119 H-LIKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNK 156 >gi|323137552|ref|ZP_08072629.1| SsrA-binding protein [Methylocystis sp. ATCC 49242] gi|322397178|gb|EFX99702.1| SsrA-binding protein [Methylocystis sp. ATCC 49242] Length = 158 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 91/157 (57%), Positives = 117/157 (74%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FEND 61 + + +P KVV+DNRKAR++Y I +FEAGI LTGTEVKSLR K I++SY Sbjct: 1 MAPKQDPNFKVVADNRKARFHYEIGETFEAGISLTGTEVKSLRTGKATIAESYCHVDRQG 60 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL N+ IPEYL NRFNH P+R RKLLL KRE+ +L AV R+GMT+VP+K+YFNAKG Sbjct: 61 EAWLVNANIPEYLAGNRFNHEPKRLRKLLLKKRELAKLAQAVEREGMTIVPLKLYFNAKG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ +A+ +GKK +DKRE EKKRDW R+K R++R+ Sbjct: 121 RAKLTIAMGRGKKLHDKREVEKKRDWSREKGRLMRDK 157 >gi|116671208|ref|YP_832141.1| SsrA-binding protein [Arthrobacter sp. FB24] gi|166222356|sp|A0JYC1|SSRP_ARTS2 RecName: Full=SsrA-binding protein gi|116611317|gb|ABK04041.1| SsrA-binding protein [Arthrobacter sp. FB24] Length = 156 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 69/153 (45%), Positives = 105/153 (68%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KVV+ NRKAR++YH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+ Sbjct: 3 KESGRKVVATNRKARHDYHVLDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWME 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY Q + NH RR RKLLL + E+ ++ +R G T+VP+++YF G AK++ Sbjct: 63 GIHIPEYNQGSWTNHSARRRRKLLLHREELTKISHKIRESGFTIVPLQLYFLD-GKAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + +A+GKK YDKR+T +++ R+ R++RE N Sbjct: 122 IGVARGKKEYDKRQTLREQQDKREALRVMRERN 154 >gi|46579241|ref|YP_010049.1| SsrA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120603196|ref|YP_967596.1| SsrA-binding protein [Desulfovibrio vulgaris DP4] gi|61216558|sp|Q72DV1|SSRP_DESVH RecName: Full=SsrA-binding protein gi|166223214|sp|A1VFF3|SSRP_DESVV RecName: Full=SsrA-binding protein gi|46448655|gb|AAS95308.1| SsrA-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120563425|gb|ABM29169.1| SsrA-binding protein [Desulfovibrio vulgaris DP4] gi|311233070|gb|ADP85924.1| SsrA-binding protein [Desulfovibrio vulgaris RCH1] Length = 154 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K+ P V++ N+KAR+ Y + + EAGI LTG+EVKSLR VN DSY F N Sbjct: 1 MSKKA---PGANVIAQNKKARHIYELSDNHEAGISLTGSEVKSLRAGHVNFRDSYVDFRN 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L +I Y A H P R+RKLLL EI L +V + G T+VP K+YF A+ Sbjct: 58 GEAFLVGLHIAPYDNAGYAQHDPDRDRKLLLHAHEIENLARSVEQKGYTVVPTKLYF-AR 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+D+A+ +GKK +D+RE K+R DR R L Sbjct: 117 GKVKVDIAVGRGKKLHDQREDLKRRAEDRDTQRELARF 154 >gi|124516510|gb|EAY58018.1| SsrA-binding protein [Leptospirillum rubarum] gi|206603413|gb|EDZ39893.1| SsrA-binding protein [Leptospirillum sp. Group II '5-way CG'] Length = 163 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 101/158 (63%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++ + NRKA + Y ++ FEAGI L GTEVK+LR +VN+ D++ EN Sbjct: 1 MAGKDQSDSRERATATNRKAFHQYEVLERFEAGIALYGTEVKALRDGRVNLGDAFVRIEN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL +I Y A NH P R R+LLL K+EI RL VR+ G+T+VP++IY + Sbjct: 61 EEAWLWQLHIGPYRAAFYDNHEPLRKRRLLLHKKEILRLMGLVRQKGLTVVPLRIYSGPR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K+++AL +GK DKR+ ++R+ +R+ R+ R Sbjct: 121 GLFKVEIALVRGKTQGDKRDAIREREANREIQRVFRSK 158 >gi|315924006|ref|ZP_07920234.1| SsrA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622846|gb|EFV02799.1| SsrA-binding protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 151 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 72/148 (48%), Positives = 100/148 (67%), Gaps = 1/148 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + K+V+ NRKAR++Y I ++E G+VLTGTEVKSLR KVN+ +S+A F + E+W+ Sbjct: 2 SDAIKIVAKNRKARHDYFIDDTYECGLVLTGTEVKSLRQGKVNLKESFADFRHGELWVYQ 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I Y Q N +N P R RKLLL KRE+ RL +RDG TLVP+ +YF G K++L Sbjct: 62 MNIAPYEQGNIYNQDPLRVRKLLLHKRELRRLIGLKQRDGYTLVPLSLYFK-NGRVKLEL 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRIL 155 ALA+GKK YDKR + +RD +R+ + + Sbjct: 121 ALAKGKKLYDKRHSIAERDANRRIQKSI 148 >gi|269128200|ref|YP_003301570.1| SsrA-binding protein [Thermomonospora curvata DSM 43183] gi|268313158|gb|ACY99532.1| SsrA-binding protein [Thermomonospora curvata DSM 43183] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 66/146 (45%), Positives = 103/146 (70%), Gaps = 1/146 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K+V+ N++ARY+Y + ++EAG+VLTGTEVKSLR + ++ D Y ++ E+WL Sbjct: 5 TGRKLVAQNKRARYDYDLGDTWEAGLVLTGTEVKSLRAGRASLVDGYGRIKDGEVWLEGV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY+Q NH PRR RKLLL +REI+++ A + G+T+VP+ +YF G AK+++A Sbjct: 65 HIPEYVQGTWTNHAPRRPRKLLLHRREINKIIAKSKEPGVTIVPLSLYFKD-GKAKVEIA 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRI 154 L +GKK+YDKR+ KR+ +R+ + Sbjct: 124 LGRGKKSYDKRQAIAKREAEREMAKA 149 >gi|308050619|ref|YP_003914185.1| SsrA-binding protein [Ferrimonas balearica DSM 9799] gi|307632809|gb|ADN77111.1| SsrA-binding protein [Ferrimonas balearica DSM 9799] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + P ++ N+KA++ Y + FEAG+ L G EVKS+R KVN++D Y Sbjct: 1 MAKKNAKKSTPTSSTIALNKKAKHEYKFLEKFEAGLALQGWEVKSMRAGKVNLTDCYVII 60 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E +L I + P R+RKLLL++RE+ RL V + G+T+VP+ +Y+ Sbjct: 61 QRGEAYLVGCNITPLNTASTHVVCEPMRSRKLLLNRRELDRLIGQVEQKGLTIVPVALYW 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 K AK+++ALAQGK+ +DKR+ K+RDW R+K R+++ Sbjct: 121 K-KSFAKLEIALAQGKQTHDKRQDSKERDWQREKARVMK 158 >gi|282865188|ref|ZP_06274241.1| SsrA-binding protein [Streptomyces sp. ACTE] gi|282560111|gb|EFB65660.1| SsrA-binding protein [Streptomyces sp. ACTE] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 100/148 (67%), Gaps = 1/148 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +K+++ N+KAR++Y I+ ++E G+VL GTEVKSLR+ + ++ D + +NDE Sbjct: 1 MAKEKDTGRKMIAQNKKARHDYLILDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDNDE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N ++PEY+Q NH +R RKLLL + EI +L + + G T+VP+ +YF G Sbjct: 61 AWLHNIHVPEYVQGTWTNHSAKRKRKLLLHRAEIDKLASKSQETGHTIVPLALYFKD-GR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQ 150 K+++ALA+GKK +DKR+T +++ R+ Sbjct: 120 VKVEIALAKGKKEFDKRQTLREKQDTRE 147 >gi|93005189|ref|YP_579626.1| SsrA-binding protein [Psychrobacter cryohalolentis K5] gi|122415968|sp|Q1QDW1|SSRP_PSYCK RecName: Full=SsrA-binding protein gi|92392867|gb|ABE74142.1| SsrA-binding protein [Psychrobacter cryohalolentis K5] Length = 158 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 92/156 (58%), Gaps = 2/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P+ + N+KAR+ Y I +FEAG+ L G EVK++R K+ I+++Y F N+E Sbjct: 1 MSKKSKKPENQICANKKARHEYFIEETFEAGLSLQGWEVKAIRAGKMTITEAYIIFRNNE 60 Query: 63 IWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L ++I P + + R RKLLL++REI +L AV + G VP+ Y+ Sbjct: 61 AFLFGAHIQPLLSSSTHVSPDSIRTRKLLLNRREIEKLMGAVNQKGYACVPLSCYWK-NS 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K + LA GKK +DKR+T K RDW+R K R ++ Sbjct: 120 LVKCQIGLALGKKQHDKRKTLKDRDWERDKQRGFKK 155 >gi|297528817|ref|YP_003670092.1| SsrA-binding protein [Geobacillus sp. C56-T3] gi|297252069|gb|ADI25515.1| SsrA-binding protein [Geobacillus sp. C56-T3] Length = 155 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ DS+A E E++L N +I Sbjct: 7 KVIAQNKKAHHDYFIEETYEAGLVLQGTEIKSIRNGRVNLKDSFAKVEKGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK++L +A+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVELGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ R+ R RE Sbjct: 126 GKKKYDKREDMKRKEAQREIERAFRER 152 >gi|229164065|ref|ZP_04292002.1| hypothetical protein bcere0009_48270 [Bacillus cereus R309803] gi|228619448|gb|EEK76337.1| hypothetical protein bcere0009_48270 [Bacillus cereus R309803] Length = 178 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 30 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIS 89 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 90 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 148 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKR K+++ R+ R R+ Sbjct: 149 GKKQFDKRHDLKEKEAKREIARAFRDR 175 >gi|296158884|ref|ZP_06841712.1| SsrA-binding protein [Burkholderia sp. Ch1-1] gi|295890759|gb|EFG70549.1| SsrA-binding protein [Burkholderia sp. Ch1-1] Length = 148 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y N+E++L ++I Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNNELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKQHDKRETEKKRDWEREKARLMR 145 >gi|317055638|ref|YP_004104105.1| SsrA-binding protein [Ruminococcus albus 7] gi|315447907|gb|ADU21471.1| SsrA-binding protein [Ruminococcus albus 7] Length = 157 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M++ + K ++DNRKAR++Y I+ + E GI L GTEVKS+R VN+ DS+ + ++ Sbjct: 1 MAIDKK---GTKQIADNRKARHDYFILETIECGIELVGTEVKSIRKGGVNLKDSWCSVDD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ +I Y Q N FN PRR R+LLL KREI RL+ V+++G+ L+P+ +YF Sbjct: 58 GEMWVKGMHISPYEQGNIFNKDPRRVRRLLLHKREIMRLFGQVQQEGLALIPLSLYFKGS 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L L +GKK +DKR+ K+ DR+ R L++ Sbjct: 118 -RVKLALGLCKGKKLHDKRDDMAKKAADREIERALKDR 154 >gi|15610237|ref|NP_217616.1| SsrA-binding protein [Mycobacterium tuberculosis H37Rv] gi|15842671|ref|NP_337708.1| SsrA-binding protein [Mycobacterium tuberculosis CDC1551] gi|31794279|ref|NP_856772.1| SsrA-binding protein [Mycobacterium bovis AF2122/97] gi|121638985|ref|YP_979209.1| SsrA-binding protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662954|ref|YP_001284477.1| SsrA-binding protein [Mycobacterium tuberculosis H37Ra] gi|148824292|ref|YP_001289046.1| SsrA-binding protein [Mycobacterium tuberculosis F11] gi|167969707|ref|ZP_02551984.1| SsrA-binding protein [Mycobacterium tuberculosis H37Ra] gi|215405096|ref|ZP_03417277.1| SsrA-binding protein [Mycobacterium tuberculosis 02_1987] gi|215412964|ref|ZP_03421665.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|215428553|ref|ZP_03426472.1| SsrA-binding protein [Mycobacterium tuberculosis T92] gi|215432056|ref|ZP_03429975.1| SsrA-binding protein [Mycobacterium tuberculosis EAS054] gi|215447382|ref|ZP_03434134.1| SsrA-binding protein [Mycobacterium tuberculosis T85] gi|218754870|ref|ZP_03533666.1| SsrA-binding protein [Mycobacterium tuberculosis GM 1503] gi|219559142|ref|ZP_03538218.1| SsrA-binding protein [Mycobacterium tuberculosis T17] gi|224991477|ref|YP_002646166.1| SsrA-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797799|ref|YP_003030800.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 1435] gi|254233724|ref|ZP_04927049.1| Ssra-binding protein smpB [Mycobacterium tuberculosis C] gi|254365728|ref|ZP_04981773.1| Ssra-binding protein smpB [Mycobacterium tuberculosis str. Haarlem] gi|254552180|ref|ZP_05142627.1| SsrA-binding protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188136|ref|ZP_05765610.1| SsrA-binding protein [Mycobacterium tuberculosis CPHL_A] gi|260202242|ref|ZP_05769733.1| SsrA-binding protein [Mycobacterium tuberculosis T46] gi|260206436|ref|ZP_05773927.1| SsrA-binding protein [Mycobacterium tuberculosis K85] gi|289444664|ref|ZP_06434408.1| SsrA-binding protein [Mycobacterium tuberculosis T46] gi|289448779|ref|ZP_06438523.1| ssra-binding protein smpB [Mycobacterium tuberculosis CPHL_A] gi|289553108|ref|ZP_06442318.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 605] gi|289571307|ref|ZP_06451534.1| ssra-binding protein smpB [Mycobacterium tuberculosis T17] gi|289575812|ref|ZP_06456039.1| ssra-binding protein smpB [Mycobacterium tuberculosis K85] gi|289746910|ref|ZP_06506288.1| small protein B [Mycobacterium tuberculosis 02_1987] gi|289751776|ref|ZP_06511154.1| ssra-binding protein smpB [Mycobacterium tuberculosis T92] gi|289755218|ref|ZP_06514596.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis EAS054] gi|289759226|ref|ZP_06518604.1| ssra-binding protein smpB [Mycobacterium tuberculosis T85] gi|289763279|ref|ZP_06522657.1| ssra-binding protein smpB [Mycobacterium tuberculosis GM 1503] gi|294993393|ref|ZP_06799084.1| SsrA-binding protein [Mycobacterium tuberculosis 210] gi|297635735|ref|ZP_06953515.1| SsrA-binding protein [Mycobacterium tuberculosis KZN 4207] gi|297732734|ref|ZP_06961852.1| SsrA-binding protein [Mycobacterium tuberculosis KZN R506] gi|298526573|ref|ZP_07013982.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|306777410|ref|ZP_07415747.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu001] gi|306781313|ref|ZP_07419650.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu002] gi|306785955|ref|ZP_07424277.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu003] gi|306790309|ref|ZP_07428631.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu004] gi|306794803|ref|ZP_07433105.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu005] gi|306799045|ref|ZP_07437347.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu006] gi|306804889|ref|ZP_07441557.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu008] gi|306809080|ref|ZP_07445748.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu007] gi|306969182|ref|ZP_07481843.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu009] gi|306973526|ref|ZP_07486187.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu010] gi|307081236|ref|ZP_07490406.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu011] gi|307085835|ref|ZP_07494948.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu012] gi|313660066|ref|ZP_07816946.1| SsrA-binding protein [Mycobacterium tuberculosis KZN V2475] gi|61247736|sp|P0A612|SSRP_MYCTU RecName: Full=SsrA-binding protein gi|61247737|sp|P0A613|SSRP_MYCBO RecName: Full=SsrA-binding protein gi|166223227|sp|A1KN98|SSRP_MYCBP RecName: Full=SsrA-binding protein gi|166223229|sp|A5U7B5|SSRP_MYCTA RecName: Full=SsrA-binding protein gi|254778371|sp|C1AGL9|SSRP_MYCBT RecName: Full=SsrA-binding protein gi|2076675|emb|CAB08390.1| PROBABLE SSRA-BINDING PROTEIN SMPB [Mycobacterium tuberculosis H37Rv] gi|13882990|gb|AAK47522.1| small protein B [Mycobacterium tuberculosis CDC1551] gi|31619874|emb|CAD96814.1| PROBABLE SSRA-BINDING PROTEIN SMPB [Mycobacterium bovis AF2122/97] gi|121494633|emb|CAL73114.1| Probable ssrA-binding protein smpB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599253|gb|EAY58357.1| Ssra-binding protein smpB [Mycobacterium tuberculosis C] gi|134151241|gb|EBA43286.1| Ssra-binding protein smpB [Mycobacterium tuberculosis str. Haarlem] gi|148507106|gb|ABQ74915.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis H37Ra] gi|148722819|gb|ABR07444.1| Ssra-binding protein smpB [Mycobacterium tuberculosis F11] gi|224774592|dbj|BAH27398.1| SsrA-binding protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319302|gb|ACT23905.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 1435] gi|289417583|gb|EFD14823.1| SsrA-binding protein [Mycobacterium tuberculosis T46] gi|289421737|gb|EFD18938.1| ssra-binding protein smpB [Mycobacterium tuberculosis CPHL_A] gi|289437740|gb|EFD20233.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 605] gi|289540243|gb|EFD44821.1| ssra-binding protein smpB [Mycobacterium tuberculosis K85] gi|289545061|gb|EFD48709.1| ssra-binding protein smpB [Mycobacterium tuberculosis T17] gi|289687438|gb|EFD54926.1| small protein B [Mycobacterium tuberculosis 02_1987] gi|289692363|gb|EFD59792.1| ssra-binding protein smpB [Mycobacterium tuberculosis T92] gi|289695805|gb|EFD63234.1| SsrA-binding protein SmpB [Mycobacterium tuberculosis EAS054] gi|289710785|gb|EFD74801.1| ssra-binding protein smpB [Mycobacterium tuberculosis GM 1503] gi|289714790|gb|EFD78802.1| ssra-binding protein smpB [Mycobacterium tuberculosis T85] gi|298496367|gb|EFI31661.1| SsrA-binding protein [Mycobacterium tuberculosis 94_M4241A] gi|308214298|gb|EFO73697.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu001] gi|308325950|gb|EFP14801.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu002] gi|308329475|gb|EFP18326.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu003] gi|308333321|gb|EFP22172.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu004] gi|308336975|gb|EFP25826.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu005] gi|308340789|gb|EFP29640.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu006] gi|308344657|gb|EFP33508.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu007] gi|308348607|gb|EFP37458.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu008] gi|308353332|gb|EFP42183.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu009] gi|308357166|gb|EFP46017.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu010] gi|308361117|gb|EFP49968.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu011] gi|308364652|gb|EFP53503.1| ssra-binding protein smpB [Mycobacterium tuberculosis SUMu012] gi|323718331|gb|EGB27509.1| ssra-binding protein smpB [Mycobacterium tuberculosis CDC1551A] gi|326902677|gb|EGE49610.1| ssra-binding protein smpB [Mycobacterium tuberculosis W-148] gi|328457578|gb|AEB03001.1| ssra-binding protein smpB [Mycobacterium tuberculosis KZN 4207] Length = 160 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +++V+ NRKAR+NY I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E Sbjct: 1 MSKSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N++IPEY + NH PRRNRKLLL +R+I L +R LVP+ +YF G Sbjct: 61 VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK+ DKR+ +RD R+ R L Sbjct: 120 VKVELALARGKQARDKRQDMARRDAQREVLRELGRR 155 >gi|254425070|ref|ZP_05038788.1| SsrA-binding protein [Synechococcus sp. PCC 7335] gi|196192559|gb|EDX87523.1| SsrA-binding protein [Synechococcus sp. PCC 7335] Length = 163 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 104/163 (63%), Gaps = 5/163 (3%) Query: 1 MSL---KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ K+ KV++DNR+ARY Y I+ ++EAGIVLTGTEVKS+R KVN+ D +A Sbjct: 1 MAKPDNKTSKGGGVKVIADNRQARYQYEILDTYEAGIVLTGTEVKSIREGKVNLRDGFAN 60 Query: 58 FENDEIWLTNSYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 + E+WL N +I + N +NH PRR RKLLL ++EI +L V + G+TLVP+K+Y Sbjct: 61 VKRGEVWLHNVHISPHSMTNLAYNHEPRRVRKLLLHRQEIRKLIGQVEQKGLTLVPLKMY 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ AL +GKK +DKR++ KK+ R R ++ N Sbjct: 121 LKG-GKVKVSFALGRGKKLHDKRDSLKKKQDKRDMARAMKSAN 162 >gi|88608497|ref|YP_506683.1| SsrA-binding protein [Neorickettsia sennetsu str. Miyayama] gi|123491468|sp|Q2GCW3|SSRP_NEOSM RecName: Full=SsrA-binding protein gi|88600666|gb|ABD46134.1| SsrA-binding protein [Neorickettsia sennetsu str. Miyayama] Length = 147 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 69/142 (48%), Positives = 103/142 (72%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y ++ FEAGIVL GTEVK+L+ ++++++ F E+WL N ++P Sbjct: 2 KVIAINKKARFDYSLIDEFEAGIVLLGTEVKALKYHSASLNEAFVAFRRFELWLNNMHVP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A+RFNH P R+RKLL+ KR+++++ AVR G+TLVP+ IY N GL K+ ALA+ Sbjct: 62 PYKPASRFNHVPTRSRKLLVHKRQLNKISGAVRTKGLTLVPLSIYVNENGLIKVKFALAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHR 153 GKK +DKR+ K RDW R++ R Sbjct: 122 GKKKHDKRQDIKDRDWARKQAR 143 >gi|15599962|ref|NP_253456.1| SsrA-binding protein [Pseudomonas aeruginosa PAO1] gi|107103865|ref|ZP_01367783.1| hypothetical protein PaerPA_01004936 [Pseudomonas aeruginosa PACS2] gi|116052915|ref|YP_793232.1| SsrA-binding protein [Pseudomonas aeruginosa UCBPP-PA14] gi|152988108|ref|YP_001350810.1| SsrA-binding protein [Pseudomonas aeruginosa PA7] gi|218893863|ref|YP_002442732.1| SsrA-binding protein [Pseudomonas aeruginosa LESB58] gi|254238497|ref|ZP_04931820.1| SmpB protein [Pseudomonas aeruginosa C3719] gi|254244331|ref|ZP_04937653.1| SmpB protein [Pseudomonas aeruginosa 2192] gi|296391595|ref|ZP_06881070.1| SsrA-binding protein [Pseudomonas aeruginosa PAb1] gi|22096178|sp|Q9HV40|SSRP_PSEAE RecName: Full=SsrA-binding protein gi|122257074|sp|Q02FQ4|SSRP_PSEAB RecName: Full=SsrA-binding protein gi|166223238|sp|A6VCM5|SSRP_PSEA7 RecName: Full=SsrA-binding protein gi|226734259|sp|B7V1I0|SSRP_PSEA8 RecName: Full=SsrA-binding protein gi|9951032|gb|AAG08154.1|AE004890_7 SmpB protein [Pseudomonas aeruginosa PAO1] gi|115588136|gb|ABJ14151.1| ssrA(tmRNA)-binding protein (small protein B) [Pseudomonas aeruginosa UCBPP-PA14] gi|126170428|gb|EAZ55939.1| SmpB protein [Pseudomonas aeruginosa C3719] gi|126197709|gb|EAZ61772.1| SmpB protein [Pseudomonas aeruginosa 2192] gi|150963266|gb|ABR85291.1| SsrA-binding protein [Pseudomonas aeruginosa PA7] gi|218774091|emb|CAW29907.1| SmpB protein [Pseudomonas aeruginosa LESB58] Length = 159 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KA ++Y I + FEAG+ L G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKHPSG--TIAQNKKALHDYFIEQRFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL KRE+ +L+ AV++ G V + +Y+ Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLHKRELGKLFGAVQQKGYACVALSMYWKK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K ++ALA+GKK++DKR TEK+RD DR+ R +R Sbjct: 119 H-LVKCEIALAKGKKDFDKRHTEKERDSDREIQRAMRH 155 >gi|21673399|ref|NP_661464.1| SsrA-binding protein [Chlorobium tepidum TLS] gi|27734571|sp|Q8KEW8|SSRP_CHLTE RecName: Full=SsrA-binding protein gi|21646498|gb|AAM71806.1| smpB family protein [Chlorobium tepidum TLS] Length = 157 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K +G P NRKAR+ Y I+ + EAGI L G+EVKS+R+ K ++S+SYA + Sbjct: 1 MSKK-QGKPEYVTAISNRKARFEYEILDTIEAGIELLGSEVKSVRLGKASLSESYAMIHH 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 ++WL N I Y P+R+R+LLL K EI RL + + G+TL+P+K YFN + Sbjct: 60 GQVWLENMQITPYEHNTLDTLEPKRSRRLLLHKAEIMRLQSKISEKGLTLIPLKAYFNKR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ KI+L LA+GKK YDKRET K RD RQ ++ +++ Sbjct: 120 GVLKIELGLARGKKLYDKRETIKNRDAKRQLQQLRKQY 157 >gi|70734314|ref|YP_257954.1| SsrA-binding protein [Pseudomonas fluorescens Pf-5] gi|123658151|sp|Q4KIH9|SSRP_PSEF5 RecName: Full=SsrA-binding protein gi|68348613|gb|AAY96219.1| SsrA-binding protein [Pseudomonas fluorescens Pf-5] Length = 160 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHRFEAGMVLAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+ + P R+RKLLL++RE+ +L+AAV++ G V + +Y++ Sbjct: 59 GEAWLLGSHFTPLTTASTHVIADPTRSRKLLLNQRELEKLFAAVQQKGYACVCLSLYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LVKCEIALGKGKKEYDKRHTERERDSDRELQRAVRTK 156 >gi|74317774|ref|YP_315514.1| SsrA-binding protein [Thiobacillus denitrificans ATCC 25259] gi|123611654|sp|Q3SI24|SSRP_THIDA RecName: Full=SsrA-binding protein gi|74057269|gb|AAZ97709.1| tmRNA-binding protein SmpB [Thiobacillus denitrificans ATCC 25259] Length = 149 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 57/144 (39%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++DN+KA ++Y I FEAG+VL G EVK++R +V + ++Y +N ++L +I Sbjct: 3 IADNKKAFHDYFIEERFEAGLVLEGWEVKAIRAGRVQLKEAYVVVKNGAVYLIGCHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R+RKLLL EI++L R G TLVP+ ++++ KG K+++ LA+G Sbjct: 63 PTASTHIHPDPTRSRKLLLHAAEINKLIGKTERAGFTLVPLDMHYS-KGRIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKR EK R+W R+K R++R Sbjct: 122 KKQHDKRAAEKDREWQREKQRLVR 145 >gi|322514580|ref|ZP_08067613.1| SsrA-binding protein [Actinobacillus ureae ATCC 25976] gi|322119519|gb|EFX91606.1| SsrA-binding protein [Actinobacillus ureae ATCC 25976] Length = 159 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E Sbjct: 1 MAKKPKVASNTIALNKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L + I + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+ Sbjct: 61 AFLFGATITPLNMASTHIVCDPARTRKLLLNKRELDSLFGKVNRDGMTVVALSLYWK-NA 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKRE K R+W K RI++ N Sbjct: 120 WAKVKVGVAKGKKLHDKREDIKDREWQVAKQRIMKNAN 157 >gi|187611498|sp|Q39V47|SSRP_GEOMG RecName: Full=SsrA-binding protein Length = 153 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I FEAG+VL GTEVKSLR+ K N++DS+A + EI+L N + Sbjct: 2 GEKLICNNKKAFHDYFIEERFEAGMVLKGTEVKSLRMGKANLNDSFALVRDGEIFLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLL+ K EI +L+ +R G ++VP+++YF GLAK++L L Sbjct: 62 INPYDFGNRQNHDPDRLRKLLMHKSEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R+ + LRE + Sbjct: 121 AKGKKLYDKREDMKKKDQSREMAQALRERS 150 >gi|300691583|ref|YP_003752578.1| RNA-binding protein, component of the SsrA quality-control system [Ralstonia solanacearum PSI07] gi|299078643|emb|CBJ51301.1| RNA-binding protein, component of the SsrA quality-control system [Ralstonia solanacearum PSI07] Length = 148 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++N+KA ++Y I +EAGI L G EVK++R + I + Y + E++L ++I Sbjct: 2 TIAENKKAFFDYFIEERYEAGIALEGWEVKAIRAGRSQIKEGYVVIRDAELFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLL EI +L V + G TLVP+ +++ A+G K ++ LA+ Sbjct: 62 LQSASTHVKPDPTRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHY-ARGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRETEK RDW R+K R++RE Sbjct: 121 GKKLYDKRETEKNRDWQREKARLMREK 147 >gi|229187337|ref|ZP_04314480.1| hypothetical protein bcere0004_48720 [Bacillus cereus BGSC 6E1] gi|228596041|gb|EEK53718.1| hypothetical protein bcere0004_48720 [Bacillus cereus BGSC 6E1] Length = 178 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 26 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 85 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L Sbjct: 86 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLAGASKETGYALVPVRIYLK-NGFAKMAL 144 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R R+ Sbjct: 145 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 175 >gi|307266965|ref|ZP_07548482.1| SsrA-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918014|gb|EFN48271.1| SsrA-binding protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 156 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+++ N+KA ++Y I ++EAGIVL+GTEVKS+R+ KVN+ DS+A EN+E++L N Sbjct: 3 KEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +G K++L Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGRVKVEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+A+GKK YDKRE +RD R+ + +E Sbjct: 122 AVARGKKLYDKREDIARRDAKRELEKHFKEK 152 >gi|88811747|ref|ZP_01127001.1| SsrA-binding protein [Nitrococcus mobilis Nb-231] gi|88791138|gb|EAR22251.1| SsrA-binding protein [Nitrococcus mobilis Nb-231] Length = 163 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 68/160 (42%), Positives = 99/160 (61%), Gaps = 7/160 (4%) Query: 5 SRGNPPKKV-----VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 S+ NP K +S NR+AR++YHI +FEAG+VL G EVK+LR + ++ +SY + Sbjct: 4 SKQNPKSKAGNSPNISVNRRARHDYHIEDTFEAGLVLEGWEVKALRAGRGSLQESYVIIK 63 Query: 60 NDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E WL I + P R RKLLL +RE+ RL A + G TLVP+ +++ Sbjct: 64 DGEAWLIGCNISPLPTASTHIQPDPIRTRKLLLHERELSRLIGATEQRGYTLVPLNMHWK 123 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AK+DLALA+GKK +DKR +K+ DW R+K R+L+ Sbjct: 124 -RGRAKLDLALAKGKKKFDKRAAQKEHDWQREKQRLLKHR 162 >gi|94310398|ref|YP_583608.1| SsrA-binding protein [Cupriavidus metallidurans CH34] gi|166223443|sp|Q1LND7|SSRP_RALME RecName: Full=SsrA-binding protein gi|93354250|gb|ABF08339.1| trans-translation protein [Cupriavidus metallidurans CH34] Length = 150 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I +EAGIVL G EVK++R +V I + Y + E++L ++I Sbjct: 2 TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + N P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+ Sbjct: 62 LQSASTHINPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKRETEK RDWDR+K RI++ Sbjct: 121 GKKQFDKRETEKNRDWDREKARIMK 145 >gi|225020769|ref|ZP_03709961.1| hypothetical protein CORMATOL_00776 [Corynebacterium matruchotii ATCC 33806] gi|305680214|ref|ZP_07403024.1| SsrA-binding protein [Corynebacterium matruchotii ATCC 14266] gi|224946471|gb|EEG27680.1| hypothetical protein CORMATOL_00776 [Corynebacterium matruchotii ATCC 33806] gi|305660834|gb|EFM50331.1| SsrA-binding protein [Corynebacterium matruchotii ATCC 14266] Length = 164 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 98/146 (67%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKAR++Y+I+ ++E G+VL GTEVKSLR K ++ D++AT ++ E+WL N +IPE Sbjct: 14 TIATNRKARHDYNILETYECGMVLVGTEVKSLREGKASLVDAFATIDDGEVWLRNLHIPE 73 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + + NH PRR RKLLL +REI L VR TLVP+ +YF G K +L LAQG Sbjct: 74 YSRGHWTNHSPRRVRKLLLHRREIDTLTGKVRDGNKTLVPLSLYFK-NGHLKCELGLAQG 132 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K+ YDKR+ K+R +R+ R L Sbjct: 133 KQAYDKRQDIKRRTEEREIVRDLGRR 158 >gi|206603343|gb|EDZ39823.1| SsrA-binding protein [Leptospirillum sp. Group II '5-way CG'] Length = 163 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 101/158 (63%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + +K + NRKA + Y ++ FEAGI L GTEVK+LR +VN+ D++ EN Sbjct: 1 MAGKDQSDSREKATATNRKAFHQYEVLERFEAGIALYGTEVKALRDGRVNLGDAFVRIEN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL +I Y A NH P R R+LLL K+EI RL VR+ G+T+VP++IY + Sbjct: 61 EEAWLWQLHIGPYRAAFYDNHEPLRKRRLLLHKKEILRLMGLVRQKGLTVVPLRIYSGHR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K+++AL +GK DKR+ ++R+ +R+ R+ R Sbjct: 121 GLFKVEIALVRGKTQGDKRDAIREREANREIQRVFRSK 158 >gi|288572788|ref|ZP_06391145.1| SsrA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568529|gb|EFC90086.1| SsrA-binding protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 153 Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 91/145 (62%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NRKAR++Y I+ +FE G+VLTGTE+KS+R +VN+ D YA E E+WL N +I Y Sbjct: 6 VAQNRKARHDYFILDTFECGLVLTGTEIKSVRAGRVNLKDGYAKLEKGELWLMNVHISPY 65 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 A+ H P + RKLL+ + EI +L ++ G TLVP+ +Y AKI+L LA+GK Sbjct: 66 ENASWRQHDPTQRRKLLMHRSEIRKLSGKIKERGFTLVPLSMYIKDGRWAKIELGLAKGK 125 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 +DKR++ + D R R +R Sbjct: 126 ALHDKRQSLAEEDAKRTMAREIRNR 150 >gi|167747904|ref|ZP_02420031.1| hypothetical protein ANACAC_02634 [Anaerostipes caccae DSM 14662] gi|167652635|gb|EDR96764.1| hypothetical protein ANACAC_02634 [Anaerostipes caccae DSM 14662] Length = 156 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K++++N+KAR++Y + + EAGIVL GTEVKS+R +I +++ + +N Sbjct: 1 MAK----TGGTKLIANNKKARHDYFVEETVEAGIVLFGTEVKSMRQGHCSIKEAFISIDN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLL+ EI R+ + V R G TL+P+++YF Sbjct: 57 GEVFVKQMHISPYEKGNIFNKDPLRERKLLMHSSEITRMMSEVNRKGYTLIPLRVYFKGS 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ L +GKK YDKR+ K+D R+ R + N Sbjct: 117 -LVKVEIGLCRGKKLYDKRQDIAKKDQQREAMRDFKVRN 154 >gi|258651902|ref|YP_003201058.1| SsrA-binding protein [Nakamurella multipartita DSM 44233] gi|258555127|gb|ACV78069.1| SsrA-binding protein [Nakamurella multipartita DSM 44233] Length = 167 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 101/159 (63%), Gaps = 6/159 (3%) Query: 1 MSLKSRGN-----PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 M+ ++ +++++ NRKAR++Y I+ ++EAGI LTGTEVKS R + + D Y Sbjct: 1 MNKIAKTQSSNRPTGRQIIASNRKARHDYEILDTYEAGISLTGTEVKSCRAGRATLVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115 AT DE+WL +I EY + NH PRR RKLLL + EI +L + +R G L+P+ + Sbjct: 61 ATISEDEVWLRGVHIAEYAEGTWTNHAPRRARKLLLHRSEILKLTSKMRESGTALIPLSL 120 Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154 YF+ G K++L LA+GK+ YDKR++ KRD DR+ R Sbjct: 121 YFS-NGRVKVELGLARGKREYDKRQSIAKRDADRELERY 158 >gi|281412310|ref|YP_003346389.1| SsrA-binding protein [Thermotoga naphthophila RKU-10] gi|281373413|gb|ADA66975.1| SsrA-binding protein [Thermotoga naphthophila RKU-10] Length = 158 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 74/145 (51%), Positives = 106/145 (73%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA +Y I+ ++EAGIVLTGTEVKSLR VN DS+ F+N E++L N +IP Sbjct: 11 KVVATNKKAYTDYEILETYEAGIVLTGTEVKSLRNGSVNFKDSFCRFKNGELYLLNLHIP 70 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y +NH P R RKLLL KRE+ RL V+ +G+T+VP+KIYFN +G+AK+++A+A+ Sbjct: 71 PYSHGGVYNHDPERPRKLLLHKRELKRLMGKVQEEGVTIVPLKIYFNDRGIAKVEIAVAR 130 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 G+K YDKRE KK++ +R+ ++ Sbjct: 131 GRKKYDKREAIKKKEMERKIREYMK 155 >gi|238928001|ref|ZP_04659761.1| tmRNA-binding protein [Selenomonas flueggei ATCC 43531] gi|238883961|gb|EEQ47599.1| tmRNA-binding protein [Selenomonas flueggei ATCC 43531] Length = 157 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N K +NRKAR++Y I ++EAG+ L GTEVKSLR K N+ DSYA +N E++L Sbjct: 3 KKNEGVKTACENRKARHDYFIHETYEAGMELVGTEVKSLRAGKANLRDSYAYIKNGEVFL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + +I Y Q N+FNH P R R+LL+ K EI +L+ R GMTL+P+K+YF +G AK+ Sbjct: 63 DHMHISPYDQGNQFNHDPLRVRRLLMHKAEILKLFGKTREKGMTLIPLKVYFK-RGKAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK NYDKR++ K++ R + L+ Sbjct: 122 ELALASGKHNYDKRQSLKEKAAKRDVEQALKAR 154 >gi|146283652|ref|YP_001173805.1| SsrA-binding protein [Pseudomonas stutzeri A1501] gi|166223241|sp|A4VPR2|SSRP_PSEU5 RecName: Full=SsrA-binding protein gi|145571857|gb|ABP80963.1| SmpB protein [Pseudomonas stutzeri A1501] gi|327482047|gb|AEA85357.1| SsrA-binding protein [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + +P ++ N+KA ++Y I + FEAG+VL G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKQSPG--TIALNKKALHDYFIEQKFEAGLVLAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++I + P R RKLLL+KRE+ +L+ AV++ G V + +Y+ Sbjct: 59 GEAWLMGAHITPLTSASTHVIADPTRTRKLLLNKRELGKLFGAVQQKGYACVALSLYWKK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + K ++ALA+GKK +DKR TEK+RD DR+ R +R Sbjct: 119 H-MIKCEIALAKGKKEFDKRHTEKERDSDREIQRAMRTK 156 >gi|91784099|ref|YP_559305.1| SsrA-binding protein [Burkholderia xenovorans LB400] gi|123062783|sp|Q13XD6|SSRP_BURXL RecName: Full=SsrA-binding protein gi|91688053|gb|ABE31253.1| SsrA-binding protein [Burkholderia xenovorans LB400] Length = 148 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y +N+E++L ++I Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNNELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKQHDKRETEKKRDWEREKARLMR 145 >gi|241662966|ref|YP_002981326.1| SsrA-binding protein [Ralstonia pickettii 12D] gi|309782115|ref|ZP_07676845.1| SsrA-binding protein [Ralstonia sp. 5_7_47FAA] gi|240864993|gb|ACS62654.1| SsrA-binding protein [Ralstonia pickettii 12D] gi|308919181|gb|EFP64848.1| SsrA-binding protein [Ralstonia sp. 5_7_47FAA] Length = 148 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I +EAG+ L G EVK++R ++ I + Y N E++L ++I Sbjct: 2 TIADNKKAFFDYFIEERYEAGMALEGWEVKAIRANRAQIKEGYVVIRNAELFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + + P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+ Sbjct: 62 LQSASTHVHPDPVRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRETEK RDW R+K R++RE Sbjct: 121 GKKLFDKRETEKDRDWQREKARLMREK 147 >gi|1694889|emb|CAA49621.1| SmpB [Mycobacterium tuberculosis H37Rv] Length = 160 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 101/156 (64%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +++V+ NRKAR+NY I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E Sbjct: 1 MSKSSRGGRQIVARNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N++IPEY + NH PRRNRKLLL +R+I L +R LVP+ +YF G Sbjct: 61 VWLRNAHIPEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK+ DKR+ +RD R+ R L Sbjct: 120 VKVELALARGKQARDKRQDMARRDAQREVLRELGRR 155 >gi|86608740|ref|YP_477502.1| SsrA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502587|sp|Q2JM08|SSRP_SYNJB RecName: Full=SsrA-binding protein gi|86557282|gb|ABD02239.1| SsrA-binding protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 154 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 2/152 (1%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +P K + DNR+AR+ Y I+ ++EAGI LTGTEVKS+R K N+ D++A F + E WL N Sbjct: 4 DPNVKTLVDNRRARFEYDILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHN 63 Query: 68 SYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I + A++ FNH P R RKLLL +REI RL V + G+T+VP+K+ N +G K Sbjct: 64 LHISPHDTASKVFNHDPTRRRKLLLHRREIDRLRGLVEQKGLTVVPLKLVLN-RGWIKAH 122 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +A+GKK +DKR+ K+R R+ R L+E Sbjct: 123 LGVARGKKLHDKRQAIKERQTQREIQRELKER 154 >gi|68535528|ref|YP_250233.1| SsrA-binding protein [Corynebacterium jeikeium K411] gi|123651454|sp|Q4JX42|SSRP_CORJK RecName: Full=SsrA-binding protein gi|68263127|emb|CAI36615.1| smpB [Corynebacterium jeikeium K411] Length = 184 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 73/153 (47%), Positives = 102/153 (66%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + VV+ NRKAR++YHI+ ++E G+VL GTEVKSLR K ++ D+YAT + E+WL Sbjct: 27 QKGAGQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWL 86 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +IPEY + NH PRR RKLLL +REI L VR TLVP+++YF A G K+ Sbjct: 87 RGLHIPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVA-GKLKV 145 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA+GK+ YDKR+ K+R +R+ R + Sbjct: 146 ELALARGKQEYDKRQDIKRRTEEREITREMGRR 178 >gi|255993953|ref|ZP_05427088.1| SsrA-binding protein [Eubacterium saphenum ATCC 49989] gi|255993621|gb|EEU03710.1| SsrA-binding protein [Eubacterium saphenum ATCC 49989] Length = 166 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 104/161 (64%), Gaps = 2/161 (1%) Query: 1 MSLKSRGNPPKK--VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + ++++NRKA + Y + + +EAGIVLTGTE+KS+R +NI + YA Sbjct: 1 MAKKGKKTKQDNGHIIANNRKALHEYFVDKRYEAGIVLTGTEIKSIRKGNINIKEGYARI 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 E+ E L +I Y Q N+FN P RNRKLLL ++EI ++ ++ + G TL+P+K+Y Sbjct: 61 EDGECILFGVHISPYEQGNQFNSPPLRNRKLLLHRQEIRKIMGSLTQKGYTLIPLKVYIT 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G+AK++L L +GKK YDKRE+ K+D R R L+++N Sbjct: 121 KSGIAKVELGLCRGKKIYDKRESIAKKDAKRNIQRELKKNN 161 >gi|187924413|ref|YP_001896055.1| SsrA-binding protein [Burkholderia phytofirmans PsJN] gi|187715607|gb|ACD16831.1| SsrA-binding protein [Burkholderia phytofirmans PsJN] Length = 148 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y +N+E++L ++I Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNNELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKQHDKRETEKKRDWEREKARLMR 145 >gi|221195428|ref|ZP_03568483.1| SsrA-binding protein [Atopobium rimae ATCC 49626] gi|221184615|gb|EEE17007.1| SsrA-binding protein [Atopobium rimae ATCC 49626] Length = 156 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 90/153 (58%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K ++ NR AR+ Y I+ +FE G+VLTGTEVKSLR I+D++ E+WL Sbjct: 2 DKRERKSIARNRSARHEYEILETFECGVVLTGTEVKSLRDRGTQITDAFCLVRGREVWLH 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y +N P R RKLLL + +I L + +R+ G+ L+P+ + F+ K+ Sbjct: 62 GVHIHPYSNGGVWNVDPDRKRKLLLHRSQITYLDSKLRQKGLALIPLDLLFDTHNRVKLV 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR +RD DR+ R L+E + Sbjct: 122 IGLARGKKLYDKRADAARRDSDREIQRALKERS 154 >gi|312140586|ref|YP_004007922.1| smpb protein [Rhodococcus equi 103S] gi|325675792|ref|ZP_08155476.1| SsrA-binding protein [Rhodococcus equi ATCC 33707] gi|311889925|emb|CBH49242.1| SmpB protein [Rhodococcus equi 103S] gi|325553763|gb|EGD23441.1| SsrA-binding protein [Rhodococcus equi ATCC 33707] Length = 157 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 103/156 (66%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +KV++ NRKAR+NY I+ ++EAG+ L GTEVKSLR K ++ D++AT ++ E Sbjct: 1 MKEK---GRKVIATNRKARHNYTIIDTYEAGVALVGTEVKSLREGKASLVDAFATVDDGE 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL +IPEY + NH PRR RKLLL KREI L R TLVP+ +YF+ G Sbjct: 58 VWLRGLHIPEYARGTWTNHAPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFSD-GK 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK++YDKR+ +R +R+ R L Sbjct: 117 VKVELALAKGKQDYDKRQDLARRTAEREVTRELGRR 152 >gi|251793094|ref|YP_003007820.1| SsrA-binding protein [Aggregatibacter aphrophilus NJ8700] gi|247534487|gb|ACS97733.1| SsrA-binding protein [Aggregatibacter aphrophilus NJ8700] Length = 160 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKAKVASNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + + + P R RKLLL +RE+ L+ RDG TLV + +Y+ Sbjct: 63 FLFGATVQPLSVASTHVVCDPTRTRKLLLKQRELDSLFGKANRDGFTLVALSLYWKG-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK +DKR+ K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQHDKRDDIKEREWKVAKDRIMKN 156 >gi|41409268|ref|NP_962104.1| SsrA-binding protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|254776424|ref|ZP_05217940.1| SsrA-binding protein [Mycobacterium avium subsp. avium ATCC 25291] gi|61216569|sp|Q73V46|SSRP_MYCPA RecName: Full=SsrA-binding protein gi|41398088|gb|AAS05718.1| SmpB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 169 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 + + G K +++ NRKAR+NY I+ ++EAG+ L GTEVKSLR + +++D++AT ++ Sbjct: 8 AKAAGGKGGSKQIIATNRKARHNYSIIETYEAGVALQGTEVKSLREGQASLADAFATIDD 67 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N YIPEY + NH PRRNRKLLL +++I RL +R + L+P+ +YF+ Sbjct: 68 GEVWLRNLYIPEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE- 126 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GKK YDKR+ +RD R+ R L Sbjct: 127 GKVKVELALARGKKAYDKRQDLAQRDAQREVVRQLGRR 164 >gi|21230921|ref|NP_636838.1| SsrA-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769078|ref|YP_243840.1| SsrA-binding protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992202|ref|YP_001904212.1| SsrA-binding protein [Xanthomonas campestris pv. campestris str. B100] gi|23822168|sp|Q8PAL7|SSRP_XANCP RecName: Full=SsrA-binding protein gi|81304958|sp|Q4UT03|SSRP_XANC8 RecName: Full=SsrA-binding protein gi|229559954|sp|B0RVV0|SSRP_XANCB RecName: Full=SsrA-binding protein gi|21112535|gb|AAM40762.1| small protein B [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574410|gb|AAY49820.1| small protein B [Xanthomonas campestris pv. campestris str. 8004] gi|167733962|emb|CAP52168.1| SsrA-binding protein SmpB [Xanthomonas campestris pv. campestris] Length = 167 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 7/165 (4%) Query: 1 MSLKS-----RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y Sbjct: 1 MSKKPAKDKAKSATATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHVIPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+++ K+++ALA+GK+++DKR+ K+RDW R K R++R HN Sbjct: 121 LYWSSN-KVKLEIALAKGKQSHDKRDAAKERDWQRDKQRVMRRHN 164 >gi|302391127|ref|YP_003826947.1| SsrA-binding protein [Acetohalobium arabaticum DSM 5501] gi|302203204|gb|ADL11882.1| SsrA-binding protein [Acetohalobium arabaticum DSM 5501] Length = 157 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KV++ NRKA++ YHI ++EAGIVL GTEVKS+R + N+ DS+A E++E++L Sbjct: 2 SEEGIKVIARNRKAKHEYHIEETYEAGIVLQGTEVKSIRQGRANLKDSFAIVEDEEVFLY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 + +I Y Q NR+NH P R RKLLL KR+I L R G TL+P+K+YF +G+ K++ Sbjct: 62 HLHIAPYKQGNRYNHKPERVRKLLLHKRQIRSLIGKTREQGYTLIPLKLYFR-RGIVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA+GK +DKRE K+R R R ++ Sbjct: 121 LALAEGKNVHDKREDIKRRTAQRDIERAFKDK 152 >gi|294102333|ref|YP_003554191.1| SsrA-binding protein [Aminobacterium colombiense DSM 12261] gi|293617313|gb|ADE57467.1| SsrA-binding protein [Aminobacterium colombiense DSM 12261] Length = 153 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 72/144 (50%), Positives = 97/144 (67%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NRKAR++Y I+ +FE GIVLTGTE+KS+R KVN+ DS+A N E+WL +I Y Sbjct: 6 VAVNRKARHDYFILDTFECGIVLTGTEIKSVRAGKVNLKDSFALIRNGEMWLIGVHISPY 65 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + + +NH P R+RKLL+ K EI RL + +R G+TLVP+ IY AKI+LAL +GK Sbjct: 66 EKGSYYNHEPERDRKLLVHKAEIIRLNSKIREKGLTLVPLSIYIKNGQHAKIELALVKGK 125 Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157 +DKR+T +RD R R LR Sbjct: 126 AEHDKRDTIAERDAKRSMARALRR 149 >gi|320352775|ref|YP_004194114.1| SsrA-binding protein [Desulfobulbus propionicus DSM 2032] gi|320121277|gb|ADW16823.1| SsrA-binding protein [Desulfobulbus propionicus DSM 2032] Length = 151 Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 99/147 (67%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K+VS N+KA ++YHI ++FEAG+VL+G EVKSLR KVN+ D YA ++ E++L N +I Sbjct: 3 QKIVSKNKKAFHDYHIEQTFEAGMVLSGPEVKSLRAGKVNLRDGYAQLKDGEVFLYNVHI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y A N P R RKLLL +REI +L + G+ L+P+KIYF A G AK++L LA Sbjct: 63 SPYSYATHINQDPLRVRKLLLHRREIRKLIGKLHEKGIALIPLKIYFIANGKAKVELGLA 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157 +GKK YDKR K++ DR R +R Sbjct: 123 KGKKLYDKRAALKEKQSDRDMERSMRR 149 >gi|187928390|ref|YP_001898877.1| SsrA-binding protein [Ralstonia pickettii 12J] gi|238691816|sp|B2UBC4|SSRP_RALPJ RecName: Full=SsrA-binding protein gi|187725280|gb|ACD26445.1| SsrA-binding protein [Ralstonia pickettii 12J] Length = 148 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I +EAG+ L G EVK++R ++ I + Y N E++L ++I Sbjct: 2 TIADNKKAFFDYFIEERYEAGMALEGWEVKAIRANRAQIKEGYVVIRNAELFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + + P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+ Sbjct: 62 LQSASTHVHPDPVRTRKLLLHAEEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRETEK RDW R+K R++RE Sbjct: 121 GKKQFDKRETEKDRDWQREKARLMREK 147 >gi|226953427|ref|ZP_03823891.1| ssrA-binding protein (small protein B) [Acinetobacter sp. ATCC 27244] gi|226835810|gb|EEH68193.1| ssrA-binding protein (small protein B) [Acinetobacter sp. ATCC 27244] Length = 157 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+N Sbjct: 1 MNKIVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYVIFKN 60 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ Sbjct: 61 GEAFLFGSQIQPLLSASTHVVPEATRTRKLLLSRRELEKLLGAVNQKGYSCVPLACYWKG 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K+++AL +GK+ +DKR TEK RDW R K R+L Sbjct: 121 P-LVKLEIALVKGKQLHDKRATEKDRDWQRDKARML 155 >gi|312898327|ref|ZP_07757717.1| SsrA-binding protein [Megasphaera micronuciformis F0359] gi|310620246|gb|EFQ03816.1| SsrA-binding protein [Megasphaera micronuciformis F0359] Length = 155 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 95/151 (62%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K ++DNRKAR++Y I ++EAG+ LTGTEVKSLR +VN+ DS+ ++ E ++ Sbjct: 4 TKGMKYITDNRKARHDYFIHDTYEAGLALTGTEVKSLRAGRVNLKDSFCRIDDGEAYIVG 63 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFN P R RKLLL K EI +L A + G TL+P+ +YF KG K+ + Sbjct: 64 MHISPYEQGNRFNADPLRTRKLLLHKYEIVKLIGATKEKGYTLIPLNLYFK-KGRVKVTV 122 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ALA GKK YDKR+ +++ R R ++ Sbjct: 123 ALATGKKLYDKRQAIAEKEAKRDIERRMKNK 153 >gi|226305799|ref|YP_002765759.1| SsrA-binding protein [Rhodococcus erythropolis PR4] gi|229490993|ref|ZP_04384826.1| SsrA-binding protein [Rhodococcus erythropolis SK121] gi|226184916|dbj|BAH33020.1| SsrA-binding protein [Rhodococcus erythropolis PR4] gi|229322109|gb|EEN87897.1| SsrA-binding protein [Rhodococcus erythropolis SK121] Length = 157 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 77/156 (49%), Positives = 104/156 (66%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +KV++ NRKAR+NY I+ ++EAGI L GTEVKSLR K ++ D++AT +N E Sbjct: 1 MKEK---GRKVIATNRKARHNYTIIDTYEAGIALVGTEVKSLREGKASLVDAFATVDNGE 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL + +IPEY Q NH PRR RKLLL KREI L R TLVP+ +YFN G Sbjct: 58 VWLRSLHIPEYTQGTWNNHSPRRTRKLLLHKREIEHLVGKTREGNQTLVPLSMYFND-GK 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LALA+GK++YDKR+ KR +R+ R L Sbjct: 117 VKVELALAKGKQDYDKRQDMAKRTAEREVTRELGRR 152 >gi|165924206|ref|ZP_02220038.1| SsrA-binding protein [Coxiella burnetii RSA 334] gi|165916348|gb|EDR34952.1| SsrA-binding protein [Coxiella burnetii RSA 334] Length = 159 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 111/159 (69%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F++ Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKS 60 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +++ P+R+RKLLL+KREI +L+ AV++ G+T+VP+ ++++ Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158 >gi|78043075|ref|YP_359162.1| SsrA-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|123577037|sp|Q3AFC2|SSRP_CARHZ RecName: Full=SsrA-binding protein gi|77995190|gb|ABB14089.1| SsrA-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 149 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 80/148 (54%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K++++NRKA ++YHI+ +EAGI L GTEVKS+R+ +VN+ DS+A EN E+WL N +I Sbjct: 2 EKIIAENRKAYHDYHILEKYEAGIALKGTEVKSIRLGRVNLRDSFARIENGELWLYNMHI 61 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y Q NRFNH P+R RKLL+ KREI RL+ R G+TLVP+K+YF AKI+L LA Sbjct: 62 SPYEQGNRFNHEPKRPRKLLMHKREIMRLFGKTREKGLTLVPLKLYFKGN-YAKIELGLA 120 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKRE KRD R+ + LR Sbjct: 121 KGKKIYDKREEMAKRDAAREIEKALRAR 148 >gi|146308647|ref|YP_001189112.1| SsrA-binding protein [Pseudomonas mendocina ymp] gi|145576848|gb|ABP86380.1| SsrA-binding protein [Pseudomonas mendocina ymp] Length = 173 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + P+ ++ N+KA ++Y + + FEAG+ L G EVKSLR K + DSY ++ Sbjct: 14 MAKQKKH--PQGTIALNKKALHDYFVEQKFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 71 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DE WL ++I + P R RKLLL KRE+ +L+ AV++ G T V + +Y+ Sbjct: 72 DEAWLMGAHITPLKTASTHVIADPIRTRKLLLHKRELDKLFGAVQQKGYTCVALSLYWKQ 131 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++ALA+GKK++DKR EK+RD +R+ R +R Sbjct: 132 H-LVKCEIALAKGKKDFDKRHVEKERDANREVQRAMRSK 169 >gi|315655090|ref|ZP_07907992.1| SsrA-binding protein [Mobiluncus curtisii ATCC 51333] gi|315490571|gb|EFU80194.1| SsrA-binding protein [Mobiluncus curtisii ATCC 51333] Length = 204 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 106/155 (68%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KKV++ N+KA ++Y + +EAG+ LTGTEVK+LR+ + ++S+++ + E W Sbjct: 47 KAESDAKKVIARNKKAAHDYFLEDRYEAGLSLTGTEVKALRMGRASLSEAWVEVDRGEAW 106 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IPEY + NH P+R RKLLL KREI +L AV G T+VP+++YF G AK Sbjct: 107 LQGANIPEYFYGSWTNHAPKRKRKLLLHKREIIKLEGAVAAKGYTIVPVELYFVG-GRAK 165 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++A+A+GK+ +DKR+T ++R+ DR+ R LRE N Sbjct: 166 VEIAVAKGKQEWDKRQTIRQREDDREAQRALREAN 200 >gi|296113924|ref|YP_003627862.1| SsrA-binding protein [Moraxella catarrhalis RH4] gi|295921618|gb|ADG61969.1| SsrA-binding protein [Moraxella catarrhalis RH4] gi|326559359|gb|EGE09786.1| SsrA-binding protein [Moraxella catarrhalis 7169] gi|326567199|gb|EGE17319.1| SsrA-binding protein [Moraxella catarrhalis 12P80B1] gi|326568295|gb|EGE18377.1| SsrA-binding protein [Moraxella catarrhalis BC8] gi|326569996|gb|EGE20043.1| SsrA-binding protein [Moraxella catarrhalis BC1] gi|326570077|gb|EGE20123.1| SsrA-binding protein [Moraxella catarrhalis BC7] gi|326572932|gb|EGE22917.1| SsrA-binding protein [Moraxella catarrhalis CO72] gi|326573822|gb|EGE23775.1| SsrA-binding protein [Moraxella catarrhalis O35E] Length = 154 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 7/158 (4%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P + N+KAR+ Y I ++EAG+VL G EVKS+R K++I++SY F+N Sbjct: 1 MAKK-----PSNQICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYVIFKN 55 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E +L ++I P + N R RKLLL++REI +LY V + G +V + Y+ Sbjct: 56 NEAFLFGAHIQPLLTSSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVVALSCYWK- 114 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K ++ALA+GKK +DKR T K+RD+ R K R + Sbjct: 115 HGRVKCEIALAKGKKLHDKRATLKERDFARDKQRGFKN 152 >gi|326693238|ref|ZP_08230243.1| SsrA-binding protein [Leuconostoc argentinum KCTC 3773] Length = 154 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 69/155 (44%), Positives = 97/155 (62%), Gaps = 1/155 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +K ++ NRKA +NY I +FEAGI LTGTE+KS+R ++ I D + T N + Sbjct: 1 MAKKQQQTEKYLAQNRKAGFNYAIEDTFEAGIALTGTEIKSVRAGQITIGDGFVTIHNGQ 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 LTN I Y Q N+FN P R R LLL KREI++L A G+T+VP+K+Y G Sbjct: 61 PLLTNVTIAPYAQGNQFNVDPTRTRPLLLHKREINQLRRAAAEPGVTIVPLKVYLK-HGF 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + + +GKK YDKRE K+RD +R+ R L+ Sbjct: 120 AKVLIGIGRGKKKYDKREDIKRRDQERELGRRLKH 154 >gi|289578142|ref|YP_003476769.1| SsrA-binding protein [Thermoanaerobacter italicus Ab9] gi|289527855|gb|ADD02207.1| SsrA-binding protein [Thermoanaerobacter italicus Ab9] Length = 156 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K+++ N+KA ++Y I ++EAGI LTGTE+KS+R+ KVN+ DS+A EN+E++L Sbjct: 2 TKEEIKIIAQNKKAYHDYFIEETYEAGIALTGTEIKSIRMGKVNLKDSFARVENNEVYLY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GLAK++ Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLAKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+A+GKK YDKRE +RD R+ + +E Sbjct: 121 LAVAKGKKLYDKREDIARRDAKRELEKHFKEK 152 >gi|229815721|ref|ZP_04446046.1| hypothetical protein COLINT_02770 [Collinsella intestinalis DSM 13280] gi|229808637|gb|EEP44414.1| hypothetical protein COLINT_02770 [Collinsella intestinalis DSM 13280] Length = 162 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 66/154 (42%), Positives = 92/154 (59%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + KK+++ NR A + Y I +FE G+ L GTEV+SLR I+DS+A N E WL Sbjct: 8 KPRREKKLIAKNRSAHHEYFIDETFECGLELAGTEVRSLRERACQITDSFALIRNGECWL 67 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y + FN P R RKLLL +++I L +R G+ LVP+++YFN G K+ Sbjct: 68 HNVHIHPYSNGSIFNRDPDRRRKLLLHRKQIDYLDGKLRMRGVALVPLELYFNEDGRVKL 127 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L L +GKK YDKRE KRD R+ R L++ + Sbjct: 128 LLGLGRGKKLYDKREDMAKRDMQREIDRALKQRS 161 >gi|308176995|ref|YP_003916401.1| SsrA-binding protein [Arthrobacter arilaitensis Re117] gi|307744458|emb|CBT75430.1| SsrA-binding protein [Arthrobacter arilaitensis Re117] Length = 159 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 112/159 (70%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K++ + +V++ NRKAR+++ I+ +FEAG+VLTGTEVKSLR K ++ D + F Sbjct: 1 MAKKNQED---RVIASNRKARHDFEILDTFEAGMVLTGTEVKSLREGKASLVDGFCQFYR 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE+++ N YIPEYL + NH RR RKLLL ++E+ ++ + G+T+VP+ +YF + Sbjct: 58 DELYIENVYIPEYLNGSWTNHAARRRRKLLLHRQELIKIERKISEAGLTVVPLSLYFKS- 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+++ +A+GK+ +DKR+T +++ +R+ R +RE N Sbjct: 117 GRAKVEIGVARGKREFDKRQTLREKQDNREALRAMRERN 155 >gi|257867448|ref|ZP_05647101.1| SsrA-binding protein [Enterococcus casseliflavus EC30] gi|257873778|ref|ZP_05653431.1| SsrA-binding protein [Enterococcus casseliflavus EC10] gi|257877528|ref|ZP_05657181.1| SsrA-binding protein [Enterococcus casseliflavus EC20] gi|325568945|ref|ZP_08145238.1| SsrA-binding protein [Enterococcus casseliflavus ATCC 12755] gi|257801504|gb|EEV30434.1| SsrA-binding protein [Enterococcus casseliflavus EC30] gi|257807942|gb|EEV36764.1| SsrA-binding protein [Enterococcus casseliflavus EC10] gi|257811694|gb|EEV40514.1| SsrA-binding protein [Enterococcus casseliflavus EC20] gi|325157983|gb|EGC70139.1| SsrA-binding protein [Enterococcus casseliflavus ATCC 12755] Length = 157 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAGIVL GTE+K++R S++N+ D + N E +L N +I Sbjct: 12 KLIAQNKKARHDYTILDTIEAGIVLQGTEIKAIRNSRINLKDGFVRIRNGEAFLVNVHIS 71 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL + GMT+VP+K+Y G AK+ + LA+ Sbjct: 72 PYEQGNIFNHDPLRTRKLLLHKKQIARLIGETKNTGMTIVPLKVYIKD-GYAKVLIGLAK 130 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK+ YDKRE+ K++D +RQ R+LR Sbjct: 131 GKREYDKRESLKRKDQERQIDRVLRNF 157 >gi|296129096|ref|YP_003636346.1| SsrA-binding protein [Cellulomonas flavigena DSM 20109] gi|296020911|gb|ADG74147.1| SsrA-binding protein [Cellulomonas flavigena DSM 20109] Length = 158 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 69/156 (44%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +V+ NRKAR++Y I EAG+VLTGTEVK+LR + ++ D +A + E Sbjct: 1 MAKAKADGRTMVAANRKARHDYLIQDVLEAGLVLTGTEVKALRAGRASLVDGWAEIDGGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL +IPEY Q NH PRR RKLLL + EI RL A R G T+VP+ +YF G Sbjct: 61 AWLHGVHIPEYSQGTWTNHAPRRKRKLLLHREEIERLDAKTREKGHTIVPLALYFLG-GR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+++ALA GKK++DKR+ ++R + + R +RE Sbjct: 120 AKVEIALAVGKKDWDKRQALRERQDNLEAQRAIRER 155 >gi|15838939|ref|NP_299627.1| SsrA-binding protein [Xylella fastidiosa 9a5c] gi|22096181|sp|Q9PAZ7|SSRP_XYLFA RecName: Full=SsrA-binding protein gi|9107522|gb|AAF85147.1|AE004045_5 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 167 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 100/157 (63%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N++D YA + EI Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLADGYAYVRDGEI 68 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I +Q + RR RKLLL +R+I L V+R+G TLVP +Y++ K Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRRQIDTLIGRVQREGFTLVPTAMYWS-KNR 127 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GK+ +DKR EK+R+W R K RI+R HN Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164 >gi|315226288|ref|ZP_07868076.1| SsrA-binding protein [Parascardovia denticolens DSM 10105] gi|315120420|gb|EFT83552.1| SsrA-binding protein [Parascardovia denticolens DSM 10105] Length = 164 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + +V++ NR+AR++Y + EAG+VL GTEVKSLR + ++S ++ T + Sbjct: 1 MAKKQSDDMQVIALNRRARHDYTLENRVEAGLVLRGTEVKSLREGRASLSQAFVTIDPHH 60 Query: 63 -IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +WL + IPEYL NH P+R RKLLL +I R ++ G T+VP+ +YF G Sbjct: 61 EMWLEGANIPEYLNGTWTNHAPKRKRKLLLHADQITRFERGIQAKGYTIVPLSLYFKE-G 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GKK YDKR+ ++ R+ R +R HN Sbjct: 120 RVKVEIALAKGKKEYDKRQALREEQDKREAQRQMRLHN 157 >gi|302871104|ref|YP_003839740.1| SsrA-binding protein [Caldicellulosiruptor obsidiansis OB47] gi|302573963|gb|ADL41754.1| SsrA-binding protein [Caldicellulosiruptor obsidiansis OB47] Length = 158 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K++ N KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A E+ Sbjct: 1 MSEKNKQND-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVED 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY + Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYLK-R 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LA+A+GKK YDKRE KRD + + + ++E+ Sbjct: 119 GKIKVELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156 >gi|256375092|ref|YP_003098752.1| SsrA-binding protein [Actinosynnema mirum DSM 43827] gi|255919395|gb|ACU34906.1| SsrA-binding protein [Actinosynnema mirum DSM 43827] Length = 161 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 100/148 (67%), Gaps = 1/148 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KV++ NRKAR++Y I+ ++EAG+VL GTEVKSLR+ + ++ D++ ++ E+WL Sbjct: 3 KERGQKVIASNRKARHDYTILDTYEAGVVLVGTEVKSLRMGRASLVDAFGQVDDGEVWLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY+ NH RR RKLLL ++EI +L + G++L+P+ +YF G K++ Sbjct: 63 ALHIPEYVAGTWTNHEVRRKRKLLLHRQEIEKLIGKTKESGLSLIPLSMYFKD-GYVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRI 154 LALA+GKK+YDKR+ KRD R+ + Sbjct: 122 LALAKGKKSYDKRQDLAKRDAQREIAKA 149 >gi|222528486|ref|YP_002572368.1| SsrA-binding protein [Caldicellulosiruptor bescii DSM 6725] gi|254778340|sp|B9MNR6|SSRP_ANATD RecName: Full=SsrA-binding protein gi|222455333|gb|ACM59595.1| SsrA-binding protein [Caldicellulosiruptor bescii DSM 6725] Length = 158 Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K++ N KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN Sbjct: 1 MSEKNKQND-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY + Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYIK-R 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LA+A+GKK YDKRE KRD + + + ++E+ Sbjct: 119 GKIKVELAVAKGKKLYDKREAIAKRDAELEIRKKMKEY 156 >gi|322384485|ref|ZP_08058167.1| SsrA-binding-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150695|gb|EFX44170.1| SsrA-binding-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 162 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 100/159 (62%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KV++ N+KA ++Y I ++E GIVLTGTE+KSLR K NISD+++T N Sbjct: 4 MAKK----TDGKVLAQNKKASHDYFIEDTYECGIVLTGTEIKSLRQGKANISDAFSTIRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ N +I + Q NRFN P R RKLLL K EI++L ++ G LVP+KIY Sbjct: 60 GECFVHNMHISPFEQGNRFNPSDPTRARKLLLKKSEINKLLGQSKQQGYALVPLKIYIR- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GKK YDKRET KRD R R LRE Sbjct: 119 NGYAKLLLGLGRGKKQYDKRETAAKRDAQRDIQRALRER 157 >gi|42784277|ref|NP_981524.1| SsrA-binding protein [Bacillus cereus ATCC 10987] gi|206976665|ref|ZP_03237570.1| SsrA-binding protein [Bacillus cereus H3081.97] gi|217962597|ref|YP_002341169.1| SsrA-binding protein [Bacillus cereus AH187] gi|222098565|ref|YP_002532623.1| ssra-binding protein [Bacillus cereus Q1] gi|229141850|ref|ZP_04270377.1| hypothetical protein bcere0013_49380 [Bacillus cereus BDRD-ST26] gi|229199857|ref|ZP_04326449.1| hypothetical protein bcere0001_52990 [Bacillus cereus m1293] gi|61216565|sp|Q72XZ2|SSRP_BACC1 RecName: Full=SsrA-binding protein gi|226734247|sp|B7HW45|SSRP_BACC7 RecName: Full=SsrA-binding protein gi|254778345|sp|B9J4L7|SSRP_BACCQ RecName: Full=SsrA-binding protein gi|42740208|gb|AAS44132.1| SsrA-binding protein [Bacillus cereus ATCC 10987] gi|206745151|gb|EDZ56553.1| SsrA-binding protein [Bacillus cereus H3081.97] gi|217067208|gb|ACJ81458.1| SsrA-binding protein [Bacillus cereus AH187] gi|221242624|gb|ACM15334.1| SsrA-binding protein [Bacillus cereus Q1] gi|228583617|gb|EEK41843.1| hypothetical protein bcere0001_52990 [Bacillus cereus m1293] gi|228641606|gb|EEK97910.1| hypothetical protein bcere0013_49380 [Bacillus cereus BDRD-ST26] Length = 155 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L A + G LVP+KIY G AK+ L Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLKIYLK-NGFAKMAL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R R+ Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|313500642|gb|ADR62008.1| SmpB [Pseudomonas putida BIRD-1] Length = 160 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL+KRE+ R+ AAV + G T V + +Y++ Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPTRTRKLLLNKRELERVEAAVAQKGYTCVALALYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK +DKR+T ++RD +R+ R +R Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTMRERDSNRELQRAVRNK 156 >gi|260888569|ref|ZP_05899832.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185] gi|330838138|ref|YP_004412718.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185] gi|260861766|gb|EEX76266.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185] gi|329745902|gb|AEB99258.1| SsrA-binding protein [Selenomonas sputigena ATCC 35185] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 105/153 (68%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 R N K+V++NRKAR++Y I +FE G+VL GTEVKSLR +VN+ DS+A+ +N EI++ Sbjct: 3 RKNDGVKIVAENRKARHDYFIHETFETGLVLQGTEVKSLRAGRVNLKDSFASIKNGEIFV 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y Q N FNH P R RKLL+ K EI +L++ R G TLVP+K+YF+ KG AK+ Sbjct: 63 ENMHISPYEQGNIFNHEPLRKRKLLMHKAEIVKLFSKTREKGFTLVPLKLYFS-KGRAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK NYDKR + R R L++H Sbjct: 122 ELALASGKHNYDKRRDLAAKAAKRDIERALKDH 154 >gi|239828269|ref|YP_002950893.1| SsrA-binding protein [Geobacillus sp. WCH70] gi|259511423|sp|C5D7L7|SSRP_GEOSW RecName: Full=SsrA-binding protein gi|239808562|gb|ACS25627.1| SsrA-binding protein [Geobacillus sp. WCH70] Length = 155 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DS+A E E++L N +I Sbjct: 7 KLIAQNKKAHHDYFIEETYEAGIVLQGTEIKSIRAGKVNLKDSFAKVEKGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK+ L + + Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPLKLYIK-NGFAKVLLGVGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+R+ R+ R RE Sbjct: 126 GKKKYDKREDMKRREAQREIERAFRER 152 >gi|228961346|ref|ZP_04122962.1| hypothetical protein bthur0005_47920 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798354|gb|EEM45351.1| hypothetical protein bthur0005_47920 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 155 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R R+ Sbjct: 126 GKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|168703817|ref|ZP_02736094.1| SsrA-binding protein [Gemmata obscuriglobus UQM 2246] Length = 240 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 70/163 (42%), Positives = 95/163 (58%), Gaps = 6/163 (3%) Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 M+ K + NR+A + Y I E GIVL GTEVKSLR N+ D+Y Sbjct: 74 MAKSGKKDKKEAADGTVNICRNRRALHEYEISDRLECGIVLVGTEVKSLRDGHANLEDAY 133 Query: 56 ATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115 A + DE+WL + IPEYL NR NH P+R RKLLL +REI + A G+TLVP+++ Sbjct: 134 ARIDGDELWLIGAEIPEYLYGNRLNHKPKRTRKLLLHRREITKFAAKADDKGLTLVPLQM 193 Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 YF G AK+++A+A+GK+ +DKR++ K D R R L Sbjct: 194 YFRD-GKAKVEIAVAKGKQTHDKRQSMKTADAKRDIDRALASR 235 >gi|89098804|ref|ZP_01171685.1| SsrA-binding protein [Bacillus sp. NRRL B-14911] gi|89086480|gb|EAR65600.1| SsrA-binding protein [Bacillus sp. NRRL B-14911] Length = 155 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAGIVL GTE+K++R +V + DSYA + E++L N ++ Sbjct: 7 KVIAQNKKAYHDYFIEDTYEAGIVLQGTEIKAIRAGRVQLKDSYARIISGEVFLINMHVS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +EI +L + G ++VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHNKEISKLIGETKEAGYSIVPLKMYLK-NGFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKNYDKRET KK++ R R RE Sbjct: 126 GKKNYDKRETLKKKEAGRDIERAFRER 152 >gi|148378237|ref|YP_001252778.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153932654|ref|YP_001382638.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153934929|ref|YP_001386190.1| SsrA-binding protein [Clostridium botulinum A str. Hall] gi|153939588|ref|YP_001389597.1| SsrA-binding protein [Clostridium botulinum F str. Langeland] gi|168177567|ref|ZP_02612231.1| SsrA-binding protein [Clostridium botulinum NCTC 2916] gi|168182156|ref|ZP_02616820.1| SsrA-binding protein [Clostridium botulinum Bf] gi|170755344|ref|YP_001779865.1| SsrA-binding protein [Clostridium botulinum B1 str. Okra] gi|170759725|ref|YP_001785565.1| SsrA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|187777178|ref|ZP_02993651.1| hypothetical protein CLOSPO_00724 [Clostridium sporogenes ATCC 15579] gi|226947455|ref|YP_002802546.1| SsrA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|237793553|ref|YP_002861105.1| SsrA-binding protein [Clostridium botulinum Ba4 str. 657] gi|166222380|sp|A7FQP4|SSRP_CLOB1 RecName: Full=SsrA-binding protein gi|166222381|sp|A5HYC7|SSRP_CLOBH RecName: Full=SsrA-binding protein gi|166222382|sp|A7G9Y7|SSRP_CLOBL RecName: Full=SsrA-binding protein gi|229559864|sp|B1IDC3|SSRP_CLOBK RecName: Full=SsrA-binding protein gi|238688509|sp|B1KTK2|SSRP_CLOBM RecName: Full=SsrA-binding protein gi|254778353|sp|C1FQX0|SSRP_CLOBJ RecName: Full=SsrA-binding protein gi|259511416|sp|C3KZ53|SSRP_CLOB6 RecName: Full=SsrA-binding protein gi|148287721|emb|CAL81786.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 3502] gi|152928698|gb|ABS34198.1| SsrA-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152930843|gb|ABS36342.1| SsrA-binding protein [Clostridium botulinum A str. Hall] gi|152935484|gb|ABS40982.1| SsrA-binding protein [Clostridium botulinum F str. Langeland] gi|169120556|gb|ACA44392.1| SsrA-binding protein [Clostridium botulinum B1 str. Okra] gi|169406714|gb|ACA55125.1| SsrA-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|182670967|gb|EDT82941.1| SsrA-binding protein [Clostridium botulinum NCTC 2916] gi|182674501|gb|EDT86462.1| SsrA-binding protein [Clostridium botulinum Bf] gi|187774106|gb|EDU37908.1| hypothetical protein CLOSPO_00724 [Clostridium sporogenes ATCC 15579] gi|226844453|gb|ACO87119.1| SsrA-binding protein [Clostridium botulinum A2 str. Kyoto] gi|229263935|gb|ACQ54968.1| SsrA-binding protein [Clostridium botulinum Ba4 str. 657] gi|295317693|gb|ADF98070.1| SsrA-binding protein [Clostridium botulinum F str. 230613] gi|322804502|emb|CBZ02052.1| tmrna-binding protein SmpB [Clostridium botulinum H04402 065] Length = 156 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K +++NRKAR++Y I ++EAGI L GTEVKS+R K N+ DSYA N Sbjct: 1 MSKKK----GSNTLAENRKARHDYFIEETYEAGIELVGTEVKSIRQGKANLKDSYAEIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I Y Q N +N P R+RKLLL K EI++L + G TL+P+ +Y Sbjct: 57 GEVFVRNMHISPYEQGNIYNKDPLRDRKLLLHKSEIYKLVGFTTQQGYTLIPLSLYLK-H 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ LA+A+GKKNYDKR+ ++ R+ R ++E + Sbjct: 116 GRVKVSLAVAKGKKNYDKRDAMLEKAAKREMDRQIKERS 154 >gi|28199262|ref|NP_779576.1| SsrA-binding protein [Xylella fastidiosa Temecula1] gi|182681988|ref|YP_001830148.1| SsrA-binding protein [Xylella fastidiosa M23] gi|32130086|sp|Q87BS0|SSRP_XYLFT RecName: Full=SsrA-binding protein gi|238691054|sp|B2I6G4|SSRP_XYLF2 RecName: Full=SsrA-binding protein gi|28057368|gb|AAO29225.1| small protein B [Xylella fastidiosa Temecula1] gi|182632098|gb|ACB92874.1| SsrA-binding protein [Xylella fastidiosa M23] gi|307578253|gb|ADN62222.1| SsrA-binding protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 167 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N+ D YA + EI Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEI 68 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I +Q + RR RKLLL + +I L V+R+G TLVP +Y++ K Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRHQIDTLIGRVQREGFTLVPTAMYWS-KNR 127 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GK+ +DKR EK+R+W R K RI+R HN Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164 >gi|146296128|ref|YP_001179899.1| SsrA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|187611472|sp|A4XIH3|SSRP_CALS8 RecName: Full=SsrA-binding protein gi|145409704|gb|ABP66708.1| SsrA-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 158 Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K++ + KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN Sbjct: 1 MAEKNKQDD-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY + Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKSEINRLAGYVQQKGYTLIPLKIYLK-R 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LA+A+GKK +DKRE KRD + + + ++E+ Sbjct: 119 GKIKVELAVAKGKKLFDKREAIAKRDAELEIRKKMKEY 156 >gi|166367183|ref|YP_001659456.1| SsrA-binding protein [Microcystis aeruginosa NIES-843] gi|189046832|sp|B0JTG1|SSRP_MICAN RecName: Full=SsrA-binding protein gi|159030832|emb|CAO88511.1| smpB [Microcystis aeruginosa PCC 7806] gi|166089556|dbj|BAG04264.1| SsrA-binding protein [Microcystis aeruginosa NIES-843] Length = 154 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 69/154 (44%), Positives = 97/154 (62%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + + K+++DNR+AR+ Y I+ +FEAG+ L GTEVKS+R KVN+ D Y N E Sbjct: 2 ANQDDKIKIITDNRQARHLYEILETFEAGVQLLGTEVKSVRAGKVNLRDGYVLVRNGEAV 61 Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I Y Q++ FNH PRR RKLL+ K+EI +L V + G+TLVP+K+YF Sbjct: 62 LINVHISPYEQSSEYFNHDPRRTRKLLMHKKEISKLIGQVEQKGLTLVPLKMYFKGS-WV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI + L +GKK +DKRE K+R R R ++ Sbjct: 121 KISIGLGRGKKLHDKREDLKRRQDQRDMARAMKR 154 >gi|167461763|ref|ZP_02326852.1| SsrA-binding protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 159 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 100/159 (62%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K KV++ N+KA ++Y I ++E GIVLTGTE+KSLR K NISD+++T N Sbjct: 1 MAKK----TDGKVLAQNKKASHDYFIEDTYECGIVLTGTEIKSLRQGKANISDAFSTIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ N +I + Q NRFN P R RKLLL K EI++L ++ G LVP+KIY Sbjct: 57 GECFVHNMHISPFEQGNRFNPSDPTRARKLLLKKSEINKLLGQSKQQGYALVPLKIYIR- 115 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GKK YDKRET KRD R R LRE Sbjct: 116 NGYAKLLLGLGRGKKQYDKRETAAKRDAQRDIQRALRER 154 >gi|255524712|ref|ZP_05391664.1| SsrA-binding protein [Clostridium carboxidivorans P7] gi|296185674|ref|ZP_06854083.1| SsrA-binding protein [Clostridium carboxidivorans P7] gi|255511606|gb|EET87894.1| SsrA-binding protein [Clostridium carboxidivorans P7] gi|296049802|gb|EFG89227.1| SsrA-binding protein [Clostridium carboxidivorans P7] Length = 157 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 97/158 (61%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ N K +++NRKA ++Y I S EAGI L GTEVKS+R + N+ DSYA N Sbjct: 1 MAKKTSTN---KTLAENRKAWHDYFIEESMEAGIELVGTEVKSIRAGRANLKDSYAEIRN 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI++ N +I Y + N FN P R RKLLL K EI RL + G TLVP+ +Y Sbjct: 58 GEIFICNVHISPYEKGNIFNRDPLRARKLLLHKSEISRLLGFTTQQGYTLVPLSLYLK-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++A+A+GKK+YDKR+ ++ R R ++E Sbjct: 117 GRVKVNIAVAKGKKDYDKRDAMLEKAAKRDIDRDMKER 154 >gi|154484691|ref|ZP_02027139.1| hypothetical protein EUBVEN_02408 [Eubacterium ventriosum ATCC 27560] gi|149734539|gb|EDM50456.1| hypothetical protein EUBVEN_02408 [Eubacterium ventriosum ATCC 27560] Length = 155 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +V++ N+KAR++Y I ++EAGIVL GTEVKSLR +I +S+ +N E+ + Sbjct: 3 KGSVRVIASNKKARHDYFIEDTYEAGIVLHGTEVKSLRQGHCSIKESFVRIDNGEVIIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R +KL+L K EI++L + G+TLVP+++YF L K+++ Sbjct: 63 MHINPYEKGNIFNKDPLRPKKLMLHKYEINKLVGKLNEKGLTLVPLQVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GKK YDKR+ KRD R+ R + Sbjct: 122 GLARGKKLYDKRQDIAKRDMKRENEREFKH 151 >gi|319951467|ref|ZP_08025276.1| SsrA-binding protein [Dietzia cinnamea P4] gi|319434859|gb|EFV90170.1| SsrA-binding protein [Dietzia cinnamea P4] Length = 169 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 7/164 (4%) Query: 1 MSLKSRGN------PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDS 54 M+ K++ +V+ NRKAR+++HI+ ++EAGI L GTE+KS+R K ++ D+ Sbjct: 1 MAKKNKKKGASSLGSDGSIVASNRKARHDFHILDTYEAGIALVGTEIKSMREGKASLVDA 60 Query: 55 YATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 +AT ++ E+WL +IPEY + NH P+R RKLLL +REI L VR TLVP+ Sbjct: 61 FATVDDGEVWLRGLHIPEYSHGSWTNHAPKRARKLLLHRREIDSLVGKVRDGNATLVPLS 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +YF G K++LA+A+GK+ +DKR+ +R +R+ R L Sbjct: 121 LYF-VNGRVKVELAVARGKQAHDKRQDIARRTAEREAVRELGRK 163 >gi|288942137|ref|YP_003444377.1| SsrA-binding protein [Allochromatium vinosum DSM 180] gi|288897509|gb|ADC63345.1| SsrA-binding protein [Allochromatium vinosum DSM 180] Length = 159 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + + ++ N+KA ++Y I + E G+VL G EVKSLR +V + +SY Sbjct: 1 MAKGTKKTSDGSSTIALNKKAGHDYFIEQRLETGLVLEGWEVKSLRAGRVQLKESYVKIL 60 Query: 60 NDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +L ++I + + P R+RKLLL + E++RL R G TL+P +Y+ Sbjct: 61 HAEAFLIGAHISALATASTHISPDPTRSRKLLLKRSELNRLIGLTERAGYTLIPTAMYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 +G AK+++ LA+GKK +DKR TE+ RDW R+K RI + Sbjct: 121 -RGRAKLEIGLAKGKKQHDKRATERDRDWQREKERIFK 157 >gi|126700776|ref|YP_001089673.1| SsrA-binding protein [Clostridium difficile 630] gi|123066719|sp|Q184Z6|SSRP_CLOD6 RecName: Full=SsrA-binding protein gi|115252213|emb|CAJ70053.1| SsrA-binding protein [Clostridium difficile] Length = 163 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KK+++ N++AR+ Y I ++E GI L GTEVKS+R KVN+SD +A+ +N E++L + Sbjct: 15 GKKILATNKRARHEYFIEETYECGIELKGTEVKSIRQGKVNLSDGFASVDNSEVFLKQVH 74 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q N FN R RKLLL K EI +L A G +L+P+ +Y G K+++AL Sbjct: 75 ISPYEQGNIFNVDSLRVRKLLLHKHEIRKLIGATTIKGYSLIPLSLYLK-NGKVKVEIAL 133 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRIL 155 A+GKK YDKR+ K+D R+ R + Sbjct: 134 AKGKKLYDKRQDMAKKDAQRRIEREM 159 >gi|325577659|ref|ZP_08147934.1| SsrA-binding protein [Haemophilus parainfluenzae ATCC 33392] gi|325160404|gb|EGC72530.1| SsrA-binding protein [Haemophilus parainfluenzae ATCC 33392] Length = 160 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++AR+ Y I EAG+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKVKVGSNTIALNKRARHEYFIEDEIEAGLELQGWEVKSMRAGKANISDSYIIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ Sbjct: 63 YLFGATIQPLSLASTHVVCDPTRTRKLLLNKRELDNLFGKSSRDGFTIVALSLYWKGP-W 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI + LA+GKK +DKR+ K+R+W K RI++ N Sbjct: 122 AKIKIGLAKGKKQHDKRDDIKEREWKVAKERIMKNAN 158 >gi|170016766|ref|YP_001727685.1| SsrA-binding protein [Leuconostoc citreum KM20] gi|169803623|gb|ACA82241.1| SsrA-binding protein [Leuconostoc citreum KM20] Length = 155 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K++ V++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T +D Sbjct: 3 KNKKQDQHNVLAQNRKARFNYAISETFEAGIALTGTEIKSVRAGQITIGDGFVTIHDDNA 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 LTN +I Y NRFN P R R+LLL KREI +L AV G+T+VP+K+Y G A Sbjct: 63 LLTNVHIAPYTAGNRFNVDPLRTRRLLLHKREIRQLEKAVTEPGVTIVPLKVYLK-HGFA 121 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + + +GKK YDKR+ K+RD +R+ R L+ Sbjct: 122 KLLIGIGRGKKQYDKRDDIKRRDQERELGRRLKH 155 >gi|160933400|ref|ZP_02080788.1| hypothetical protein CLOLEP_02245 [Clostridium leptum DSM 753] gi|156867277|gb|EDO60649.1| hypothetical protein CLOLEP_02245 [Clostridium leptum DSM 753] Length = 153 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K ++ N+KA ++Y + SFEAGI L GTEVKS+R +VN+ DS+ + + E+ + Sbjct: 2 KENLKTIAQNKKAFHDYFLEESFEAGIELCGTEVKSIRQGRVNLKDSWCSIVDGEMLVNG 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N FN P R R+LL+ KREI RL+ V++DG +L+P+ +YF K+ + Sbjct: 62 MHISPYEQGNIFNKDPMRVRRLLMHKREIMRLFGLVKQDGYSLIPVSLYFKGS-RVKVQV 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L +GKK YDKR R R R ++E N Sbjct: 121 GLCKGKKLYDKRSDLAARAAKRDIQRAMKERN 152 >gi|26991416|ref|NP_746841.1| SsrA-binding protein [Pseudomonas putida KT2440] gi|148549801|ref|YP_001269903.1| SsrA-binding protein [Pseudomonas putida F1] gi|37999615|sp|Q88DT6|SSRP_PSEPK RecName: Full=SsrA-binding protein gi|166223240|sp|A5W9A9|SSRP_PSEP1 RecName: Full=SsrA-binding protein gi|24986487|gb|AAN70305.1|AE016671_6 SsrA-binding protein [Pseudomonas putida KT2440] gi|148513859|gb|ABQ80719.1| SsrA-binding protein [Pseudomonas putida F1] Length = 160 Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL+KRE+ R+ AAV + G T V + +Y++ Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPTRTRKLLLNKRELERVEAAVAQKGYTCVALALYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK +DKR+T ++RD +R+ R +R Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTMRERDSNRELQRAVRNK 156 >gi|262274821|ref|ZP_06052632.1| tmRNA-binding protein SmpB [Grimontia hollisae CIP 101886] gi|262221384|gb|EEY72698.1| tmRNA-binding protein SmpB [Grimontia hollisae CIP 101886] Length = 161 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 91/159 (57%), Gaps = 3/159 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K+ + ++ NR+AR+ Y I E G+ L G EVKSLR K NIS+SY F Sbjct: 1 MAKKNAKNKAGSNTIAQNRQARHEYFIEDDIEVGLELQGWEVKSLRAGKANISESYVFFR 60 Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ + I + P R RKLLL +RE+ L V R+G T+V + +Y+ Sbjct: 61 DGEAYMSGATITPLNVASTHVVADPTRVRKLLLKRRELDSLIGKVNREGYTVVALSLYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K AK+ + LA+GKK +DKR+ K RDW R K RI++ Sbjct: 121 -KSWAKLKIGLAKGKKLHDKRDASKDRDWQRDKARIMKN 158 >gi|170692163|ref|ZP_02883326.1| SsrA-binding protein [Burkholderia graminis C4D1M] gi|170142593|gb|EDT10758.1| SsrA-binding protein [Burkholderia graminis C4D1M] Length = 148 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 90/144 (62%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y +N E++L ++I Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNGELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHINPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKMHDKRETEKKRDWEREKARLMR 145 >gi|254976743|ref|ZP_05273215.1| SsrA-binding protein [Clostridium difficile QCD-66c26] gi|255094127|ref|ZP_05323605.1| SsrA-binding protein [Clostridium difficile CIP 107932] gi|255102298|ref|ZP_05331275.1| SsrA-binding protein [Clostridium difficile QCD-63q42] gi|255308191|ref|ZP_05352362.1| SsrA-binding protein [Clostridium difficile ATCC 43255] gi|255315879|ref|ZP_05357462.1| SsrA-binding protein [Clostridium difficile QCD-76w55] gi|255518539|ref|ZP_05386215.1| SsrA-binding protein [Clostridium difficile QCD-97b34] gi|255651659|ref|ZP_05398561.1| SsrA-binding protein [Clostridium difficile QCD-37x79] gi|255657103|ref|ZP_05402512.1| SsrA-binding protein [Clostridium difficile QCD-23m63] gi|260684694|ref|YP_003215979.1| SsrA-binding protein [Clostridium difficile CD196] gi|260688352|ref|YP_003219486.1| SsrA-binding protein [Clostridium difficile R20291] gi|296452063|ref|ZP_06893774.1| SsrA-binding protein [Clostridium difficile NAP08] gi|296879542|ref|ZP_06903524.1| SsrA-binding protein [Clostridium difficile NAP07] gi|306521459|ref|ZP_07407806.1| SsrA-binding protein [Clostridium difficile QCD-32g58] gi|260210857|emb|CBA65970.1| SsrA-binding protein [Clostridium difficile CD196] gi|260214369|emb|CBE06756.1| SsrA-binding protein [Clostridium difficile R20291] gi|296259013|gb|EFH05897.1| SsrA-binding protein [Clostridium difficile NAP08] gi|296429480|gb|EFH15345.1| SsrA-binding protein [Clostridium difficile NAP07] Length = 151 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KK+++ N++AR+ Y I ++E GI L GTEVKS+R KVN+SD +A+ +N E++L + Sbjct: 3 GKKILATNKRARHEYFIEETYECGIELKGTEVKSIRQGKVNLSDGFASVDNSEVFLKQVH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q N FN R RKLLL K EI +L A G +L+P+ +Y G K+++AL Sbjct: 63 ISPYEQGNIFNVDSLRVRKLLLHKHEIRKLIGATTIKGYSLIPLSLYLK-NGKVKVEIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRIL 155 A+GKK YDKR+ K+D R+ R + Sbjct: 122 AKGKKLYDKRQDMAKKDAQRRIEREM 147 >gi|295395220|ref|ZP_06805428.1| SsrA-binding protein [Brevibacterium mcbrellneri ATCC 49030] gi|294971982|gb|EFG47849.1| SsrA-binding protein [Brevibacterium mcbrellneri ATCC 49030] Length = 156 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 68/155 (43%), Positives = 105/155 (67%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + KK ++ NRKAR++YHI ++EAG+VLTGTEVKSLR + +++D +A Sbjct: 1 MAK----DTGKKTIAKNRKARHDYHIEDTYEAGLVLTGTEVKSLREGRASLTDGFALIFQ 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N YIPEYLQ + NH RR RKLLL K EI ++ ++ G TL+P+++YF+ Sbjct: 57 GEAWLENVYIPEYLQGSWTNHSARRKRKLLLHKAEILKISHKLKESGRTLIPLELYFDGS 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K+++A+A+GKK++DKR+T +++ R+ R + Sbjct: 117 -RVKVEIAVARGKKDWDKRQTLREKQDQREAQRAM 150 >gi|326562483|gb|EGE12801.1| SsrA-binding protein [Moraxella catarrhalis 46P47B1] Length = 154 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 7/158 (4%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P + N+KAR+ Y I ++EAG+VL G EVKS+R K++I++SY F+N Sbjct: 1 MAKK-----PSNQICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYVIFKN 55 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E +L ++I P + N R RKLLL++REI +LY V + G +V + Y+ Sbjct: 56 NEAFLFGAHIQPLLTSSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVVALSCYWK- 114 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K ++ALA+GKK +DKR T K+RD+ R K R + Sbjct: 115 HGRVKCEIALAKGKKLHDKRVTLKERDFARDKQRGFKN 152 >gi|169634094|ref|YP_001707830.1| SsrA-binding protein [Acinetobacter baumannii SDF] gi|169152886|emb|CAP01924.1| ssrA-binding protein (Small protein B) [Acinetobacter baumannii] Length = 179 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY F+N Sbjct: 23 MNKIVVKKHNGGTIAQNKRARHDYFIEEKFEAGMSLLGWEVKSLRAGRMSLTESYVIFKN 82 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I P + R RKLLLS+RE+ +L AV + G + VP+ Y+ Sbjct: 83 GEAFLFGAQIQPLLSASTHIVPEATRTRKLLLSRRELEKLMGAVNQKGYSCVPLACYWKG 142 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K+++AL +GK+ +DKR TEK+RDW R K RI Sbjct: 143 H-LVKLEIALVKGKQLHDKRATEKERDWQRDKARIF 177 >gi|158320014|ref|YP_001512521.1| SsrA-binding protein [Alkaliphilus oremlandii OhILAs] gi|187611467|sp|A8MFY7|SSRP_ALKOO RecName: Full=SsrA-binding protein gi|158140213|gb|ABW18525.1| SsrA-binding protein [Alkaliphilus oremlandii OhILAs] Length = 155 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 98/158 (62%), Gaps = 6/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K+++ N+KAR++Y I +FE GIVL GTEVKS+R K+NI D YA EN Sbjct: 1 MASK-----GTKLIATNKKARHDYFIEETFETGIVLVGTEVKSIRQGKLNIKDGYARVEN 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y Q N FN P R RKLLL K EI +L V++ G TL+P+ Y Sbjct: 56 SEVFLYNVHISPYEQGNIFNKDPLRVRKLLLHKSEIRKLIGYVQQKGYTLIPLSFYLKD- 114 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K++L + GKK YDKR+ K+D R+ + LR+ Sbjct: 115 GLIKVELGIGVGKKIYDKRQDIAKKDAARRIDKELRQR 152 >gi|218246982|ref|YP_002372353.1| SsrA-binding protein [Cyanothece sp. PCC 8801] gi|257060058|ref|YP_003137946.1| SsrA-binding protein [Cyanothece sp. PCC 8802] gi|218167460|gb|ACK66197.1| SsrA-binding protein [Cyanothece sp. PCC 8801] gi|256590224|gb|ACV01111.1| SsrA-binding protein [Cyanothece sp. PCC 8802] Length = 155 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 70/154 (45%), Positives = 102/154 (66%), Gaps = 2/154 (1%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 P K+VSDNR+AR+ Y I+ ++EAGI L GTEVKS+R KVN+ D Y + E L Sbjct: 3 NETKPIKIVSDNRQARFLYEILETYEAGIALVGTEVKSVRAGKVNLGDGYVLIRHGEAIL 62 Query: 66 TNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 N +I Y + FNH PRR+RKLLL ++EI++L + + G+T+VP+K+Y L K Sbjct: 63 LNVHISPYEASGAYFNHDPRRSRKLLLHRKEINKLIGQIEQKGLTVVPLKMYLKGS-LVK 121 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L LA+GKK +DKRET K+R +R+ R ++++ Sbjct: 122 VSLGLARGKKLHDKRETIKRRQDEREMSRAMKQY 155 >gi|154507626|ref|ZP_02043268.1| hypothetical protein ACTODO_00107 [Actinomyces odontolyticus ATCC 17982] gi|293189304|ref|ZP_06608027.1| SsrA-binding protein [Actinomyces odontolyticus F0309] gi|153797260|gb|EDN79680.1| hypothetical protein ACTODO_00107 [Actinomyces odontolyticus ATCC 17982] gi|292821767|gb|EFF80703.1| SsrA-binding protein [Actinomyces odontolyticus F0309] Length = 175 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KK ++ N+KAR++Y I ++EAG+ L GTEVK+LR+ + ++ D++ E W Sbjct: 17 KAASDAKKTIARNKKARHDYTIEDTWEAGLALMGTEVKALRMGRASLVDAWVEINGGEAW 76 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IP Y Q + NH P R RKLLL + EI R+ V G T+VP+++YF G K Sbjct: 77 LYGANIPLYSQGSWTNHAPTRKRKLLLHRAEIDRMQDRVAAKGYTIVPLELYFIG-GRVK 135 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ALA+GK+ +DKR+ +++ R+ R +R + Sbjct: 136 VEIALAKGKQEWDKRQALREKQDQREAERAMRRY 169 >gi|119945318|ref|YP_942998.1| SsrA-binding protein [Psychromonas ingrahamii 37] gi|187629778|sp|A1SV84|SSRP_PSYIN RecName: Full=SsrA-binding protein gi|119863922|gb|ABM03399.1| SsrA-binding protein [Psychromonas ingrahamii 37] Length = 161 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 92/159 (57%), Gaps = 3/159 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K S+ ++ N++A ++YH+ FEAG+ L G EVKSLR K NI+DSY + Sbjct: 1 MAKKNSKTKNNDNTIARNKRASHDYHLEERFEAGLELQGWEVKSLRAGKANIADSYIFLK 60 Query: 60 NDEIWLTNSYIPE-YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E WL + P + ++ P R RKLLL++RE+ L V R G +++P+ +Y+ Sbjct: 61 NGEAWLLGATFPPLLVASSHVVCDPMRYRKLLLNRRELDNLVGKVERQGYSIIPISLYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI ALA+GK+ +DKR K R+W K R+++ Sbjct: 121 -HAWVKISFALAKGKQEHDKRADVKDREWKVDKERMMKH 158 >gi|194289772|ref|YP_002005679.1| ssra-binding protein [Cupriavidus taiwanensis LMG 19424] gi|238692746|sp|B3R297|SSRP_CUPTR RecName: Full=SsrA-binding protein gi|193223607|emb|CAQ69614.1| RNA-binding protein, component of the SsrA quality-control system [Cupriavidus taiwanensis LMG 19424] Length = 149 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 60/145 (41%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++DN+KA ++Y I +EAGIVL G EVK++R +V I + Y + E++L ++I Sbjct: 2 TIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHISP 61 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLL EI +L V + G TLVP+ +++ +G K ++ LA+ Sbjct: 62 LQSASTHVKPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYT-RGRVKCEIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKRETEK+RDW R+K RI++ Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145 >gi|312794351|ref|YP_004027274.1| ssra-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312877084|ref|ZP_07737056.1| SsrA-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796134|gb|EFR12491.1| SsrA-binding protein [Caldicellulosiruptor lactoaceticus 6A] gi|312181491|gb|ADQ41661.1| SsrA-binding protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 158 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN E++L Sbjct: 5 KKQDDIKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVENGEVFL 64 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +G K+ Sbjct: 65 FNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYLK-RGKIKV 123 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LA+A+GKK YDKRE KRD + + + ++E+ Sbjct: 124 ELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156 >gi|302867828|ref|YP_003836465.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315505768|ref|YP_004084655.1| ssra-binding protein [Micromonospora sp. L5] gi|302570687|gb|ADL46889.1| SsrA-binding protein [Micromonospora aurantiaca ATCC 27029] gi|315412387|gb|ADU10504.1| SsrA-binding protein [Micromonospora sp. L5] Length = 163 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K+++ N+KAR++Y I++++EAGIVL GTEVKSLR +V++ D++A + EI L + Sbjct: 6 GRKLIASNKKARHDYDILKTYEAGIVLAGTEVKSLREGRVSLVDAFAQERDGEIMLYGLH 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY NH PRR RKLLL + EI R+ +R G+TLVP+ +YF A G AK++L L Sbjct: 66 IAEYGFGTWTNHAPRRTRKLLLHRVEIARILEKLRDGGITLVPLSMYF-ADGWAKVELGL 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+G+++YDKR+ +RD R+ R + Sbjct: 125 ARGRRSYDKRQALAERDAKREIAREMGRR 153 >gi|229020333|ref|ZP_04177099.1| hypothetical protein bcere0030_48230 [Bacillus cereus AH1273] gi|229026564|ref|ZP_04182913.1| hypothetical protein bcere0029_48370 [Bacillus cereus AH1272] gi|228734741|gb|EEL85386.1| hypothetical protein bcere0029_48370 [Bacillus cereus AH1272] gi|228740969|gb|EEL91201.1| hypothetical protein bcere0030_48230 [Bacillus cereus AH1273] Length = 155 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L A + G +LVP++IY G AK+ L Sbjct: 63 MHINTYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYSLVPLRIYLK-NGFAKMAL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R+ R+ Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARVFRDR 152 >gi|329936504|ref|ZP_08286240.1| tmRNA-binding protein SmpB [Streptomyces griseoaurantiacus M045] gi|329304019|gb|EGG47901.1| tmRNA-binding protein SmpB [Streptomyces griseoaurantiacus M045] Length = 190 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +++V+ N+KAR++Y I+ FEAG+VL+GTEVKSLR + ++ D + + +E WL N++I Sbjct: 35 RRIVAQNKKARHDYAIIDVFEAGLVLSGTEVKSLRQGRASLVDGFVQIDGNEAWLHNAHI 94 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PEY Q NH RR RKLLL + EI RL + + G T+VP+ +YF G AK ++ALA Sbjct: 95 PEYSQGTWTNHSVRRKRKLLLHREEIDRLASKSQETGHTIVPLALYFKD-GRAKAEIALA 153 Query: 131 QGKKNYDKRETEKKRDWDRQKHRIL 155 +GKK YDKR+T ++R R+ R++ Sbjct: 154 RGKKEYDKRQTLRERQDRRESDRVI 178 >gi|307546756|ref|YP_003899235.1| SsrA-binding protein [Halomonas elongata DSM 2581] gi|307218780|emb|CBV44050.1| SsrA-binding protein [Halomonas elongata DSM 2581] Length = 163 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 70/150 (46%), Positives = 93/150 (62%), Gaps = 2/150 (1%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 ++ N+KAR+ YHI +FEAG+ L G EVKSLR K ++D+Y +N E WL S+I Sbjct: 13 SNAIALNKKARFEYHIDETFEAGLALAGWEVKSLRAGKAQLTDTYILVKNGEAWLLGSHI 72 Query: 71 PEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + P R RKLLL ++EI R+++ + G T VP+K+Y+ K +LAL Sbjct: 73 TPLNTVSTHEVADPTRTRKLLLHRKEIARIFSRTQDKGHTCVPLKLYWKGS-KVKCELAL 131 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK +DKR TEK RDW RQK RILREHN Sbjct: 132 VTGKKLHDKRATEKDRDWQRQKGRILREHN 161 >gi|226314808|ref|YP_002774704.1| SsrA-binding protein [Brevibacillus brevis NBRC 100599] gi|226097758|dbj|BAH46200.1| SsrA-binding protein [Brevibacillus brevis NBRC 100599] Length = 157 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 103/154 (66%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ K ++ NRKAR++YHI + +EAGI LTGTE+KS+R S+V + DS+A +N E+ Sbjct: 2 SKDKAGTKTIAQNRKARHDYHIEQVYEAGIELTGTEIKSVRASRVQLKDSFARVQNGELL 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y Q NRFNH P R RKLL+ + EI +L +R G +LVP+ IY G AK Sbjct: 62 LYNVHISPYEQGNRFNHEPERTRKLLMRRLEILKLNGLIRERGYSLVPLSIYLKG-GWAK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++LAL +GKKNYDKRE KK++ R R LRE Sbjct: 121 VELALVKGKKNYDKREDLKKKESTRDIERALRER 154 >gi|312134372|ref|YP_004001710.1| ssra-binding protein [Caldicellulosiruptor owensensis OL] gi|311774423|gb|ADQ03910.1| SsrA-binding protein [Caldicellulosiruptor owensensis OL] Length = 158 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A E+ E++ Sbjct: 4 AKKQDDIKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEDGEVF 63 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +G K Sbjct: 64 LYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYLK-RGKIK 122 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++LA+A+GKK YDKRE KRD + + + ++E+ Sbjct: 123 VELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156 >gi|297583431|ref|YP_003699211.1| SsrA-binding protein [Bacillus selenitireducens MLS10] gi|297141888|gb|ADH98645.1| SsrA-binding protein [Bacillus selenitireducens MLS10] Length = 155 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K ++ N+KA ++YHI ++EAG+VLTGTE+KS+R +VN+ DS+A N E+WL+N +I Sbjct: 5 DKPIAQNKKANHDYHIEETYEAGMVLTGTEIKSIRNRRVNLKDSFARISNGEVWLSNMHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y Q NR+NH P R RKLLL K++I +L + G TLVP+KIY G+AK+ + L Sbjct: 65 SPYEQGNRYNHDPVRARKLLLHKKQIDQLIGLTKEKGYTLVPLKIYIK-NGVAKVLIGLG 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKRE K++D R+ R ++H Sbjct: 124 KGKKKYDKREDLKRKDAKREVERAFKDH 151 >gi|295676805|ref|YP_003605329.1| SsrA-binding protein [Burkholderia sp. CCGE1002] gi|295436648|gb|ADG15818.1| SsrA-binding protein [Burkholderia sp. CCGE1002] Length = 148 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y N E++L ++I Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNGELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIHPDPVRTRKLLLHSEEISKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKMHDKRETEKKRDWEREKARLMR 145 >gi|331268764|ref|YP_004395256.1| SsrA-binding protein [Clostridium botulinum BKT015925] gi|329125314|gb|AEB75259.1| SsrA-binding protein [Clostridium botulinum BKT015925] Length = 156 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + N ++ NRKA + Y I +FEAGI L GTEVKS+R K N+ DSYA+ +N Sbjct: 1 MAKDKKNN----TLAQNRKAYHEYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIKN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I Y Q N FN P R RKLLL K +I+ L + G TL+P+ +Y K Sbjct: 57 GEVFVCNMHISPYEQGNIFNKDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLK-K 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKKNYDKR+ + R R ++E Sbjct: 116 GRVKVALGVAKGKKNYDKRDAIAAKSAKRDIDRQMKER 153 >gi|209518728|ref|ZP_03267544.1| SsrA-binding protein [Burkholderia sp. H160] gi|209500842|gb|EEA00882.1| SsrA-binding protein [Burkholderia sp. H160] Length = 148 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 62/144 (43%), Positives = 89/144 (61%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA Y+Y + +EAG+VL G EVK+LR + I + Y N E++L ++I Sbjct: 3 IIDNRKAFYDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNGELFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIHPDPVRTRKLLLHGEEISKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKMHDKRETEKKRDWEREKARLMR 145 >gi|167563164|ref|ZP_02356080.1| SsrA-binding protein [Burkholderia oklahomensis EO147] gi|167570347|ref|ZP_02363221.1| SsrA-binding protein [Burkholderia oklahomensis C6786] Length = 148 Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|330721851|gb|EGG99818.1| tmRNA-binding protein SmpB [gamma proteobacterium IMCC2047] Length = 160 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P + N+KAR++YHI +FEAG+VL+G EVKSLR K I++SY ++ Sbjct: 4 MAKKKKTSPGS--ICQNKKARHDYHINETFEAGLVLSGWEVKSLRAGKGQITESYIMLKD 61 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++I N P R RKLLL K EI +L+ A +++G T V + +Y+ Sbjct: 62 GEAWLFGAHIEPLKTACNHVIADPLRTRKLLLHKGEISKLFKATQQEGRTCVALALYWKG 121 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K ++A+A GKK +D R EK RDW+R K R++R + Sbjct: 122 PH-VKCEVAIATGKKQHDYRAAEKDRDWNRDKQRVMRHN 159 >gi|296118848|ref|ZP_06837424.1| SsrA-binding protein [Corynebacterium ammoniagenes DSM 20306] gi|295968337|gb|EFG81586.1| SsrA-binding protein [Corynebacterium ammoniagenes DSM 20306] Length = 169 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 73/152 (48%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G + ++ NR+AR++Y I+ FE GIVL GTE+KSLR K++++D++AT +N E++L Sbjct: 13 GADGTQTLATNRRARHDYKILEEFECGIVLLGTEIKSLREGKISLTDAFATVDNGEVFLR 72 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +IPEY + NH P+R RKLLL +REI R+ VR TL+P+K+Y G AK++ Sbjct: 73 NLHIPEYSMGSWTNHSPKRTRKLLLHRREIDRIMGQVRDGNKTLIPLKVYLR-NGYAKLE 131 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L LAQGK++YDKRE K+RD DR+ R L Sbjct: 132 LGLAQGKQDYDKREDIKRRDQDREITRELGRR 163 >gi|285018461|ref|YP_003376172.1| ssra-binding protein small protein b (smpb) [Xanthomonas albilineans GPE PC73] gi|283473679|emb|CBA16182.1| probable ssra-binding protein small protein b (smpb) [Xanthomonas albilineans] Length = 167 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 68/165 (41%), Positives = 98/165 (59%), Gaps = 7/165 (4%) Query: 1 MSLKSRGN-----PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G EVKS+R + NI +SY Sbjct: 1 MSKKPGKDKANGPTANKTIALNKRARHEYHLEDRYEAGLALQGWEVKSIRAGRANIGESY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A E++L + I +Q + RR RKLLL + EI +L V RDG TLVP Sbjct: 61 AFVRQGELFLFGAQITPLIQASTHVVADDRRTRKLLLHRNEIDKLIGRVERDGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y++ K K+++ALA+GK+++DKR K RDW R K RI+R HN Sbjct: 121 MYWS-KNKIKLEIALAKGKQDHDKRNAAKDRDWARDKQRIMRRHN 164 >gi|255327043|ref|ZP_05368119.1| SsrA-binding protein [Rothia mucilaginosa ATCC 25296] gi|255296260|gb|EET75601.1| SsrA-binding protein [Rothia mucilaginosa ATCC 25296] Length = 164 Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P +++ N+KAR+NY+IV ++EAGIVL GTEVKSLR +I D + ++E+WL Sbjct: 13 PNNAIIAQNKKARHNYNIVDTYEAGIVLLGTEVKSLRDGGASIVDGFCQVTDNELWLEGI 72 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY NH RR RKLLL + EI++L ++ G T+VP+K+YF+ G AK+++A Sbjct: 73 HIAEYGYGTWTNHAARRRRKLLLHRSEINKLAQKLKETGYTVVPLKLYFS-NGRAKVEIA 131 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA GK+ YDKR+ ++R D + R +R N Sbjct: 132 LATGKREYDKRQALRERQDDLEARRAMRYRN 162 >gi|300718006|ref|YP_003742809.1| SsrA-binding protein (small protein B) [Erwinia billingiae Eb661] gi|299063842|emb|CAX60962.1| SsrA-binding protein (small protein B) [Erwinia billingiae Eb661] Length = 160 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 89/160 (55%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NIS+SY + Sbjct: 1 MTKKKAHKPGSATIAMNKRARHEYFIEDEFEAGLSLQGWEVKSLRAGKANISESYIMLRD 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ P R RKLLL +RE+ L+ RDG T+V + +Y+ Sbjct: 61 GEAFLFGATFQALIGASSHVVCDPTRTRKLLLKERELAILFDKANRDGYTIVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+ + +A+GKK +DKR K R+W K RI++ N Sbjct: 120 NAWAKLKIGVAKGKKEHDKRGDIKDREWKTDKARIMKHAN 159 >gi|170719884|ref|YP_001747572.1| SsrA-binding protein [Pseudomonas putida W619] gi|229559892|sp|B1J247|SSRP_PSEPW RecName: Full=SsrA-binding protein gi|169757887|gb|ACA71203.1| SsrA-binding protein [Pseudomonas putida W619] Length = 160 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R+RKLLL+KRE+ R+ AAV + G T V + +Y++ Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPIRSRKLLLNKRELERVEAAVAQKGYTCVALALYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK +DKR+T ++RD +R+ R +R Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTVRERDSNRELQRAVRNK 156 >gi|113460618|ref|YP_718684.1| SsrA-binding protein [Haemophilus somnus 129PT] gi|170718943|ref|YP_001784110.1| SsrA-binding protein [Haemophilus somnus 2336] gi|123031204|sp|Q0I279|SSRP_HAES1 RecName: Full=SsrA-binding protein gi|189046830|sp|B0USL1|SSRP_HAES2 RecName: Full=SsrA-binding protein gi|112822661|gb|ABI24750.1| SsrA-binding protein [Haemophilus somnus 129PT] gi|168827072|gb|ACA32443.1| SsrA-binding protein [Haemophilus somnus 2336] Length = 160 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++AR++Y I EAG+ L G EVKS+R K +I DSY F++ E Sbjct: 3 KKKAKVASNTIALNKRARHDYFIEDEIEAGLSLQGWEVKSMRAGKASIGDSYIIFKHGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+++E+ L+ RDG T+V + +Y+ Sbjct: 63 YLFGATIQPLSVASTHIVCDPTRTRKLLLNQKELASLFGKANRDGFTIVALSLYWKGP-W 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK +DKRE K R+W K RI++ Sbjct: 122 AKVKIGLAKGKKLHDKREDIKDREWKVTKDRIMKN 156 >gi|297544417|ref|YP_003676719.1| SsrA-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842192|gb|ADH60708.1| SsrA-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 156 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 103/152 (67%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K++ N+KA ++Y I ++EAGI LTGTE+KS+R+ KVN+ DS+A EN+E++L Sbjct: 2 TKEEIKIIVQNKKAYHDYFIEETYEAGIALTGTEIKSIRMGKVNLKDSFARVENNEVYLY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GLAK++ Sbjct: 62 NMHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLAKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+A+GKK YDKRE +RD R+ + +E Sbjct: 121 LAVAKGKKLYDKREDIARRDAKRELEKHFKEK 152 >gi|238026923|ref|YP_002911154.1| SsrA-binding protein [Burkholderia glumae BGR1] gi|237876117|gb|ACR28450.1| SsrA-binding protein [Burkholderia glumae BGR1] Length = 151 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVIVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|312623214|ref|YP_004024827.1| ssra-binding protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203681|gb|ADQ47008.1| SsrA-binding protein [Caldicellulosiruptor kronotskyensis 2002] Length = 158 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 75/158 (47%), Positives = 108/158 (68%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K++ + KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN Sbjct: 1 MSEKNKKDD-IKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY + Sbjct: 60 GEVFLYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYIK-R 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LA+A+GKK YDKRE KRD + + + ++E+ Sbjct: 119 GKIKVELAVAKGKKLYDKREAIAKRDAELEIRKKMKEY 156 >gi|153207445|ref|ZP_01946145.1| SsrA-binding protein [Coxiella burnetii 'MSU Goat Q177'] gi|212218718|ref|YP_002305505.1| SsrA-binding protein [Coxiella burnetii CbuK_Q154] gi|226706520|sp|B6J7W1|SSRP_COXB1 RecName: Full=SsrA-binding protein gi|120576576|gb|EAX33200.1| SsrA-binding protein [Coxiella burnetii 'MSU Goat Q177'] gi|212012980|gb|ACJ20360.1| SsrA-binding protein [Coxiella burnetii CbuK_Q154] Length = 159 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 110/159 (69%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F++ Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKS 60 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +++ P+ +RKLLL+KREI +L+ AV++ G+T+VP+ ++++ Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQSSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK +DKRET K+R+W+R+KHR+L+ H Sbjct: 121 NH-VKVEIALAKGKKTHDKRETIKRREWEREKHRVLKSH 158 >gi|86605902|ref|YP_474665.1| SsrA-binding protein [Synechococcus sp. JA-3-3Ab] gi|123506715|sp|Q2JV45|SSRP_SYNJA RecName: Full=SsrA-binding protein gi|86554444|gb|ABC99402.1| SsrA-binding protein [Synechococcus sp. JA-3-3Ab] Length = 154 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 99/152 (65%), Gaps = 2/152 (1%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +P K + +NR+AR+ Y I+ ++EAGI LTGTEVKS+R K N+ D++A F + E WL N Sbjct: 4 DPNVKTLVENRRARFEYEILETYEAGIQLTGTEVKSIRAGKANLQDAFALFRDGEAWLHN 63 Query: 68 SYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 ++ + + FNH P R RKLLL +REI RL V + G+T+VP+++ N +G K Sbjct: 64 LHVAPHGTASKVFNHDPTRRRKLLLHRREIDRLRGLVEQKGLTVVPLRLVLN-RGWIKAH 122 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +A+GKK +DKR+ K+R+ R+ R L+ Sbjct: 123 LGVARGKKLHDKRQAIKERETRREIQRELKGR 154 >gi|219847594|ref|YP_002462027.1| SsrA-binding protein [Chloroflexus aggregans DSM 9485] gi|254778351|sp|B8G4V8|SSRP_CHLAD RecName: Full=SsrA-binding protein gi|219541853|gb|ACL23591.1| SsrA-binding protein [Chloroflexus aggregans DSM 9485] Length = 158 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 75/159 (47%), Positives = 107/159 (67%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ VV++NRKAR++Y I + EAGIVL+G+E+KS+R +VN+ S+A + Sbjct: 1 MATKTNH---IAVVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVID 57 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DE++L +++I Y Q+ FNH P R RKLLL +REI+RL VR GMTLVP+KIY Sbjct: 58 DEVFLYDAHIAPYEQSGKYFNHDPLRPRKLLLHRREINRLNGLVRMKGMTLVPLKIYLKG 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + AK++L +A+GKK YDKRE +RD +R R L+ Sbjct: 118 R-RAKVELGIARGKKIYDKREDIARRDAERDIERALKRR 155 >gi|238897904|ref|YP_002923583.1| trans-translation protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259511424|sp|C4K4E2|SSRP_HAMD5 RecName: Full=SsrA-binding protein gi|229465661|gb|ACQ67435.1| trans-translation protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 160 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K P ++ N++AR+ Y I FEAG+VL G EVK+LR KVNISDSY + Sbjct: 1 MIKKKTYKPGSATIAQNKRARHEYFIEEEFEAGVVLQGWEVKALRAGKVNISDSYVLLKK 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + R RKLLL +REI L+ + R+G T+V + +Y+ Sbjct: 61 GEAFLLGATITPLNVASTHTVCESMRTRKLLLKQREIDSLFGRINREGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +KI +A+A+GKK +DKR++ K RDW K RI++ N Sbjct: 120 NAWSKIKIAVAKGKKTHDKRDSIKDRDWKINKDRIMKNAN 159 >gi|297581237|ref|ZP_06943161.1| SsrA-binding protein [Vibrio cholerae RC385] gi|297534553|gb|EFH73390.1| SsrA-binding protein [Vibrio cholerae RC385] Length = 161 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY + Sbjct: 1 MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL + +Y++ Sbjct: 61 DGEAFISGMTIIPLQQASTHVVTNPTRIRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +A+GKK +DKRE K+++W RQK R+++ Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157 >gi|29654605|ref|NP_820297.1| SsrA-binding protein [Coxiella burnetii RSA 493] gi|39932367|sp|Q83C29|SSRP_COXBU RecName: Full=SsrA-binding protein gi|29541873|gb|AAO90811.1| SsrA-binding protein [Coxiella burnetii RSA 493] Length = 159 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 109/159 (68%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P ++ ++ N+KA ++Y++ + FEAG+VL G EVKS+R +V + DSY F+ Sbjct: 1 MNKQISKKPAQRTIALNKKALHDYYVEQRFEAGLVLEGWEVKSIRAGRVQLRDSYVVFKG 60 Query: 61 DEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +++ P+R+RKLLL+KREI +L+ AV++ G+T+VP+ ++++ Sbjct: 61 GEAWLIGAHLSPLPNVAEYMKADPQRSRKLLLNKREIGKLFGAVQKQGLTVVPLDLHWHK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ LA+GKK +DKRET K+R+W+R+KHR+L+ H Sbjct: 121 NH-VKVEIVLAKGKKTHDKRETIKRREWEREKHRVLKSH 158 >gi|167035725|ref|YP_001670956.1| SsrA-binding protein [Pseudomonas putida GB-1] gi|189046838|sp|B0KIT1|SSRP_PSEPG RecName: Full=SsrA-binding protein gi|166862213|gb|ABZ00621.1| SsrA-binding protein [Pseudomonas putida GB-1] Length = 160 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL+KRE+ RL AAV + G T V + +Y++ Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPIRTRKLLLNKRELERLEAAVAQKGYTCVALALYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK +DKR+T ++RD +R+ R +R Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTMRERDSNRELQRAVRNK 156 >gi|84515848|ref|ZP_01003209.1| SsrA-binding protein [Loktanella vestfoldensis SKA53] gi|84510290|gb|EAQ06746.1| SsrA-binding protein [Loktanella vestfoldensis SKA53] Length = 157 Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats. Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 2/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K+ KVV++NR+ARY++ I E GI+LTG+EVKSLRV + NI+DSYA+ ++ Sbjct: 1 MSKKT-EKTNYKVVAENRRARYDFAIEDDIEVGIILTGSEVKSLRVGQSNIADSYASVDD 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WLTN+YI Y F+H RR RKLL+S++E+ RL+ A +R+GMTLVP+ +YFN + Sbjct: 60 GELWLTNAYIAPYE-RAMFSHEERRKRKLLVSRKELSRLWNATKREGMTLVPLVLYFNDR 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 GL K+ +A A+GKKN+DKR TE RDW RQK R+LR+ Sbjct: 119 GLVKLKIATAKGKKNHDKRATEAARDWGRQKQRLLRQ 155 >gi|304415297|ref|ZP_07395987.1| trans-translation protein [Candidatus Regiella insecticola LSR1] gi|304282852|gb|EFL91325.1| trans-translation protein [Candidatus Regiella insecticola LSR1] Length = 175 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K ++ NR+AR++Y I FEAG+VL G EVKSLR KVNISDSY +N Sbjct: 15 MIKKKINKSGSASIAQNRRARHDYFIEEEFEAGLVLQGWEVKSLRAGKVNISDSYVVLKN 74 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E L + I + P R RKLLL+KR+I L+ + R+G T+V + +Y+ Sbjct: 75 GEAHLFGATITPLTVASTHVICEPMRTRKLLLNKRQIDSLFGRINREGYTVVALSMYWK- 133 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +KI + +A+GKK++DKR + K ++W K RI++ N Sbjct: 134 NAWSKIKIGVAKGKKDHDKRASLKDKEWRVDKARIMKSAN 173 >gi|186476076|ref|YP_001857546.1| SsrA-binding protein [Burkholderia phymatum STM815] gi|184192535|gb|ACC70500.1| SsrA-binding protein [Burkholderia phymatum STM815] Length = 148 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y + +EAG+VL G EVK+LR + I + Y +N E++L ++I Sbjct: 3 IIDNRKAFFDYSVEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNAELYLIGTHISPL 62 Query: 74 LQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 +A++F N P R RKLLL EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASKFANLDPVRTRKLLLHAEEISKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K R++R Sbjct: 122 KKLHDKRETEKKRDWEREKARLMR 145 >gi|283457762|ref|YP_003362351.1| tmRNA-binding protein [Rothia mucilaginosa DY-18] gi|283133766|dbj|BAI64531.1| tmRNA-binding protein [Rothia mucilaginosa DY-18] Length = 165 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P +++ N+KAR+NY+IV ++EAGIVL GTEVKSLR +I D + ++E+WL Sbjct: 14 PNNAIIAQNKKARHNYNIVDTYEAGIVLLGTEVKSLRDGGASIVDGFCQVTDNEMWLEGI 73 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY NH RR RKLLL + EI++L ++ G T+VP+K+YF+ G K+++A Sbjct: 74 HIAEYGYGTWTNHAARRRRKLLLHRSEINKLAQKLKETGYTVVPLKMYFS-NGRVKVEIA 132 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA GK+ YDKR+ ++R D + R +R N Sbjct: 133 LATGKREYDKRQALRERQDDLEARRAMRYRN 163 >gi|260914395|ref|ZP_05920864.1| SsrA-binding protein [Pasteurella dagmatis ATCC 43325] gi|260631496|gb|EEX49678.1| SsrA-binding protein [Pasteurella dagmatis ATCC 43325] Length = 160 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F++ E Sbjct: 3 KKKAKVSSNTIALNKRARHDYFIEEEIEAGLSLQGWEVKSMRAGKANISDSYIIFKDGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+++E+ L+ RDG T+V + +Y+ Sbjct: 63 YLFGATIQPLSVASTHIVCDPTRTRKLLLNQKELASLFGKANRDGYTIVALSLYWK-NAW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK +DKRE K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQHDKREDIKEREWKVTKDRIMKN 156 >gi|23465746|ref|NP_696349.1| SsrA-binding protein [Bifidobacterium longum NCC2705] gi|23326431|gb|AAN24985.1| SsrA-binding protein [Bifidobacterium longum NCC2705] Length = 199 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65 +K++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL Sbjct: 44 KETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWL 103 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K Sbjct: 104 EGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 162 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 163 EIALARGKKEFDKRQALREEQDKREALRAMRYAN 196 >gi|325663557|ref|ZP_08151967.1| SsrA-binding protein [Lachnospiraceae bacterium 4_1_37FAA] gi|325470456|gb|EGC73687.1| SsrA-binding protein [Lachnospiraceae bacterium 4_1_37FAA] Length = 155 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K ++ +S+ EN E+++ Sbjct: 3 KTSTKLIANNKKAYHDYFILDTYEAGIALHGTEVKSLRMGKCSVKESFIRVENGEVFIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K EI+++ + GM +VP+K+YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRPRKLLLHKAEINKMLGKTKEKGMAIVPLKVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR K+D R+ R + N Sbjct: 122 GLARGKKLYDKRNDIAKKDQQREAQRDFKIRN 153 >gi|326203827|ref|ZP_08193689.1| SsrA-binding protein [Clostridium papyrosolvens DSM 2782] gi|325985925|gb|EGD46759.1| SsrA-binding protein [Clostridium papyrosolvens DSM 2782] Length = 154 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+V+ N+KAR++Y I + EAGIVL+GTEVKS+R K+N+ +SYA + E+ ++ Sbjct: 3 KEAVKIVAQNKKARHDYFIEETIEAGIVLSGTEVKSVRQGKLNLKESYAAIVDGEVIVSG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N FN P R+RKLLL K EI+RL ++ G TLVP++ Y +G+ KI+L Sbjct: 63 MHISPYEQGNIFNKDPLRDRKLLLHKSEINRLIGLTQQKGFTLVPVQAYLK-RGMVKIEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+GKK YDKR+ RD R+ R ++E Sbjct: 122 GVARGKKLYDKRDDIAARDAKREIDRKMKE 151 >gi|30023165|ref|NP_834796.1| SsrA-binding protein [Bacillus cereus ATCC 14579] gi|206970299|ref|ZP_03231252.1| SsrA-binding protein [Bacillus cereus AH1134] gi|218235552|ref|YP_002369899.1| SsrA-binding protein [Bacillus cereus B4264] gi|228923837|ref|ZP_04087115.1| hypothetical protein bthur0011_48120 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229049780|ref|ZP_04194337.1| hypothetical protein bcere0027_47380 [Bacillus cereus AH676] gi|229082334|ref|ZP_04214797.1| hypothetical protein bcere0023_49510 [Bacillus cereus Rock4-2] gi|229112535|ref|ZP_04242072.1| hypothetical protein bcere0018_47750 [Bacillus cereus Rock1-15] gi|229130372|ref|ZP_04259330.1| hypothetical protein bcere0015_48070 [Bacillus cereus BDRD-Cer4] gi|229147653|ref|ZP_04275997.1| hypothetical protein bcere0012_47790 [Bacillus cereus BDRD-ST24] gi|229153278|ref|ZP_04281456.1| hypothetical protein bcere0011_48080 [Bacillus cereus m1550] gi|229181382|ref|ZP_04308711.1| hypothetical protein bcere0005_47240 [Bacillus cereus 172560W] gi|229193369|ref|ZP_04320319.1| hypothetical protein bcere0002_50150 [Bacillus cereus ATCC 10876] gi|296505528|ref|YP_003667228.1| SsrA-binding protein [Bacillus thuringiensis BMB171] gi|33301595|sp|Q815L5|SSRP_BACCR RecName: Full=SsrA-binding protein gi|226734246|sp|B7HEC5|SSRP_BACC4 RecName: Full=SsrA-binding protein gi|29898725|gb|AAP11997.1| SsrA-binding protein [Bacillus cereus ATCC 14579] gi|206734876|gb|EDZ52045.1| SsrA-binding protein [Bacillus cereus AH1134] gi|218163509|gb|ACK63501.1| SsrA-binding protein [Bacillus cereus B4264] gi|228590170|gb|EEK48039.1| hypothetical protein bcere0002_50150 [Bacillus cereus ATCC 10876] gi|228602118|gb|EEK59610.1| hypothetical protein bcere0005_47240 [Bacillus cereus 172560W] gi|228629882|gb|EEK86533.1| hypothetical protein bcere0011_48080 [Bacillus cereus m1550] gi|228635862|gb|EEK92348.1| hypothetical protein bcere0012_47790 [Bacillus cereus BDRD-ST24] gi|228653071|gb|EEL08951.1| hypothetical protein bcere0015_48070 [Bacillus cereus BDRD-Cer4] gi|228670915|gb|EEL26222.1| hypothetical protein bcere0018_47750 [Bacillus cereus Rock1-15] gi|228700766|gb|EEL53289.1| hypothetical protein bcere0023_49510 [Bacillus cereus Rock4-2] gi|228722693|gb|EEL74081.1| hypothetical protein bcere0027_47380 [Bacillus cereus AH676] gi|228835966|gb|EEM81329.1| hypothetical protein bthur0011_48120 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326580|gb|ADH09508.1| SsrA-binding protein [Bacillus thuringiensis BMB171] Length = 155 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R R+ Sbjct: 126 GKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|167037765|ref|YP_001665343.1| SsrA-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116180|ref|YP_004186339.1| SsrA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|254778387|sp|B0KA44|SSRP_THEP3 RecName: Full=SsrA-binding protein gi|166856599|gb|ABY95007.1| SsrA-binding protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929271|gb|ADV79956.1| SsrA-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 156 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 103/151 (68%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+++ N+KA ++Y I ++EAGIVL+GTEVKS+R+ KVN+ DS+A EN+E++L N Sbjct: 3 KEEIKIIAQNKKAYHDYFIEETYEAGIVLSGTEVKSIRMGKVNLKDSFARVENNEVYLYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL++ EI++L V R G TL+P K+Y +GL K++L Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLLNRHEINKLIGYVTRKGYTLIPTKLYLK-RGLVKVEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+A+GKK YDKRE +RD + + +E Sbjct: 122 AVARGKKLYDKREDIARRDAKSELEKHFKEK 152 >gi|258517023|ref|YP_003193245.1| SsrA-binding protein [Desulfotomaculum acetoxidans DSM 771] gi|257780728|gb|ACV64622.1| SsrA-binding protein [Desulfotomaculum acetoxidans DSM 771] Length = 152 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 74/147 (50%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K + N+KAR+ YHI ++E GIVLTGTEVKSLRV + N+ DSYA EN E+ L N +I Sbjct: 4 KNICQNKKARHEYHIEDTYETGIVLTGTEVKSLRVGRGNLLDSYARVENGEMMLYNMHIS 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P+R RKLL+ K EI RL+ VR G +L+P + YF G K++L LA+ Sbjct: 64 PYEQGNRYNHEPKRTRKLLMHKSEIMRLFGRVREKGYSLIPTRAYFRD-GKVKVELGLAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKR+ RD R+ R R+ Sbjct: 123 GKKTFDKRQDLAARDARREVDRAFRDR 149 >gi|172041180|ref|YP_001800894.1| SsrA-binding protein [Corynebacterium urealyticum DSM 7109] gi|238064646|sp|B1VI76|SSRP_CORU7 RecName: Full=SsrA-binding protein gi|171852484|emb|CAQ05460.1| unnamed protein product [Corynebacterium urealyticum DSM 7109] Length = 178 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 74/161 (45%), Positives = 106/161 (65%), Gaps = 5/161 (3%) Query: 2 SLKSRGNPPK----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 S + + P+ V++ NRKAR++YHI+ ++E G+VL GTEVK+LR K ++ D+YAT Sbjct: 13 SKGKKASAPRGGGPAVIATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYAT 72 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E+WL +IPEY + N +NH PRR RKLLL +REI L VR TLVP+++YF Sbjct: 73 IDAGEVWLRGLHIPEYSRGNFWNHTPRRVRKLLLHRREIDSLTGKVRDGNHTLVPLQLYF 132 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K +LALA+GK++YDKR+ K+R +R+ R L Sbjct: 133 VD-GRLKCELALARGKQDYDKRQDIKRRTEEREVVRELGRK 172 >gi|47567333|ref|ZP_00238046.1| SsrA-binding protein [Bacillus cereus G9241] gi|228988351|ref|ZP_04148443.1| hypothetical protein bthur0001_50060 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47555954|gb|EAL14292.1| SsrA-binding protein [Bacillus cereus G9241] gi|228771332|gb|EEM19806.1| hypothetical protein bthur0001_50060 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 155 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLTGASKETGYALVPVRIYLK-NGFAKMAL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R R+ Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|319442605|ref|ZP_07991761.1| SsrA-binding protein [Corynebacterium variabile DSM 44702] Length = 184 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 R VV+ NRKAR+N+ I+ ++EAG+ L GTEVKSLR K ++ D++AT ++ EIWL Sbjct: 27 RKGGGPLVVATNRKARHNFKILETYEAGLALVGTEVKSLREGKASLVDAFATVDDGEIWL 86 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +IPEY NH PRR RKLL+ + EI + VR TLVP++IYF+ G AK+ Sbjct: 87 RGLHIPEYTHGTWTNHAPRRTRKLLMHRGEIDSVMGKVRDGKNTLVPLRIYFSG-GRAKV 145 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LALA GK++YDKR+ K+R +R+ R L Sbjct: 146 ELALATGKQDYDKRQDIKRRTEEREVTRELGRR 178 >gi|284048324|ref|YP_003398663.1| SsrA-binding protein [Acidaminococcus fermentans DSM 20731] gi|283952545|gb|ADB47348.1| SsrA-binding protein [Acidaminococcus fermentans DSM 20731] Length = 154 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 76/152 (50%), Positives = 100/152 (65%), Gaps = 2/152 (1%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY-ATFENDEIWLTN 67 P K +++NRKAR++Y+I ++E GIVLTGTEVKSLR K N+ DSY A ++ E++L N Sbjct: 3 KPVKAIAENRKARHDYNIHETYETGIVLTGTEVKSLRQGKANLKDSYAAVTKSGEVYLYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y NRFN P R+RKLL+ KREI +L R G TLVP+++YF+ GL K L Sbjct: 63 LHISPYEHGNRFNVDPLRDRKLLMHKREIQKLIGKTREKGFTLVPLQLYFS-HGLVKCKL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ALA GKK YDKR+ R R R ++E N Sbjct: 122 ALATGKKLYDKRQAMADRAAKRDMDRAMKERN 153 >gi|114321060|ref|YP_742743.1| SsrA-binding protein [Alkalilimnicola ehrlichii MLHE-1] gi|122311349|sp|Q0A7D4|SSRP_ALHEH RecName: Full=SsrA-binding protein gi|114227454|gb|ABI57253.1| SsrA-binding protein [Alkalilimnicola ehrlichii MLHE-1] Length = 160 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 ++ + P+ V++ NRKAR+ +HI + EAG+ L G EVKSLR +VN+ ++Y Sbjct: 3 AVSKKKKTPENVIALNRKARFEFHIEETMEAGLALEGWEVKSLRAGRVNLQEAYVLIRRG 62 Query: 62 EIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL P + P R R+LLL K+EI RL A R+G T+VP+ +++ + Sbjct: 63 EAWLIGCTITPLPTASTHIKPDPTRTRRLLLHKKEIARLTGAADREGYTVVPLDLHWK-R 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + LA+GKK +DKR +K++DW RQK R+++ Sbjct: 122 GKAKLSIGLAKGKKKHDKRADQKEQDWQRQKQRLMKHK 159 >gi|71276141|ref|ZP_00652421.1| SmpB protein [Xylella fastidiosa Dixon] gi|71900378|ref|ZP_00682512.1| SmpB protein [Xylella fastidiosa Ann-1] gi|170730632|ref|YP_001776065.1| SsrA-binding protein [Xylella fastidiosa M12] gi|238687928|sp|B0U3K6|SSRP_XYLFM RecName: Full=SsrA-binding protein gi|71163059|gb|EAO12781.1| SmpB protein [Xylella fastidiosa Dixon] gi|71729881|gb|EAO31978.1| SmpB protein [Xylella fastidiosa Ann-1] gi|167965425|gb|ACA12435.1| small protein B [Xylella fastidiosa M12] Length = 167 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N+ D YA + EI Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEI 68 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I +Q + RR RKLLL +R+I L V+R+G TLVP +Y++ K Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRRQIDTLIGRVQREGFTLVPTAMYWS-KNR 127 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GK+ +DKR EK+R+W R K RI+R HN Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164 >gi|15640864|ref|NP_230495.1| SsrA-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585744|ref|ZP_01675539.1| small protein B [Vibrio cholerae 2740-80] gi|121726043|ref|ZP_01679342.1| small protein B [Vibrio cholerae V52] gi|147675473|ref|YP_001216329.1| SsrA-binding protein [Vibrio cholerae O395] gi|153802067|ref|ZP_01956653.1| small protein B [Vibrio cholerae MZO-3] gi|153818058|ref|ZP_01970725.1| small protein B [Vibrio cholerae NCTC 8457] gi|153822030|ref|ZP_01974697.1| small protein B [Vibrio cholerae B33] gi|153824635|ref|ZP_01977302.1| small protein B [Vibrio cholerae MZO-2] gi|153828277|ref|ZP_01980944.1| small protein B [Vibrio cholerae 623-39] gi|227081024|ref|YP_002809575.1| small protein B [Vibrio cholerae M66-2] gi|229505542|ref|ZP_04395052.1| tmRNA-binding protein SmpB [Vibrio cholerae BX 330286] gi|229510787|ref|ZP_04400266.1| tmRNA-binding protein SmpB [Vibrio cholerae B33] gi|229513048|ref|ZP_04402514.1| tmRNA-binding protein SmpB [Vibrio cholerae TMA 21] gi|229517908|ref|ZP_04407352.1| tmRNA-binding protein SmpB [Vibrio cholerae RC9] gi|229523347|ref|ZP_04412754.1| tmRNA-binding protein SmpB [Vibrio cholerae TM 11079-80] gi|229525471|ref|ZP_04414876.1| tmRNA-binding protein SmpB [Vibrio cholerae bv. albensis VL426] gi|229530044|ref|ZP_04419434.1| tmRNA-binding protein SmpB [Vibrio cholerae 12129(1)] gi|229608562|ref|YP_002879210.1| SsrA-binding protein [Vibrio cholerae MJ-1236] gi|254285526|ref|ZP_04960490.1| small protein B [Vibrio cholerae AM-19226] gi|254847985|ref|ZP_05237335.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255744648|ref|ZP_05418599.1| tmRNA-binding protein SmpB [Vibrio cholera CIRS 101] gi|258625223|ref|ZP_05720136.1| SsrA-binding protein [Vibrio mimicus VM603] gi|261212094|ref|ZP_05926380.1| tmRNA-binding protein SmpB [Vibrio sp. RC341] gi|262161221|ref|ZP_06030332.1| tmRNA-binding protein SmpB [Vibrio cholerae INDRE 91/1] gi|262165110|ref|ZP_06032847.1| tmRNA-binding protein SmpB [Vibrio mimicus VM223] gi|262168725|ref|ZP_06036420.1| tmRNA-binding protein SmpB [Vibrio cholerae RC27] gi|262191965|ref|ZP_06050131.1| tmRNA-binding protein SmpB [Vibrio cholerae CT 5369-93] gi|262402800|ref|ZP_06079361.1| tmRNA-binding protein SmpB [Vibrio sp. RC586] gi|298499023|ref|ZP_07008830.1| SsrA-binding protein [Vibrio cholerae MAK 757] gi|12644304|sp|P52116|SSRP_VIBCH RecName: Full=SsrA-binding protein gi|172047450|sp|A5F375|SSRP_VIBC3 RecName: Full=SsrA-binding protein gi|254778389|sp|C3LT98|SSRP_VIBCM RecName: Full=SsrA-binding protein gi|9655300|gb|AAF94010.1| small protein B [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550107|gb|EAX60123.1| small protein B [Vibrio cholerae 2740-80] gi|121631525|gb|EAX63895.1| small protein B [Vibrio cholerae V52] gi|124122426|gb|EAY41169.1| small protein B [Vibrio cholerae MZO-3] gi|126511404|gb|EAZ73998.1| small protein B [Vibrio cholerae NCTC 8457] gi|126520424|gb|EAZ77647.1| small protein B [Vibrio cholerae B33] gi|146317356|gb|ABQ21895.1| small protein B [Vibrio cholerae O395] gi|148876231|gb|EDL74366.1| small protein B [Vibrio cholerae 623-39] gi|149741853|gb|EDM55882.1| small protein B [Vibrio cholerae MZO-2] gi|150424388|gb|EDN16325.1| small protein B [Vibrio cholerae AM-19226] gi|227008912|gb|ACP05124.1| small protein B [Vibrio cholerae M66-2] gi|227012668|gb|ACP08878.1| small protein B [Vibrio cholerae O395] gi|229333818|gb|EEN99304.1| tmRNA-binding protein SmpB [Vibrio cholerae 12129(1)] gi|229339052|gb|EEO04069.1| tmRNA-binding protein SmpB [Vibrio cholerae bv. albensis VL426] gi|229339710|gb|EEO04725.1| tmRNA-binding protein SmpB [Vibrio cholerae TM 11079-80] gi|229344623|gb|EEO09597.1| tmRNA-binding protein SmpB [Vibrio cholerae RC9] gi|229349941|gb|EEO14895.1| tmRNA-binding protein SmpB [Vibrio cholerae TMA 21] gi|229350752|gb|EEO15693.1| tmRNA-binding protein SmpB [Vibrio cholerae B33] gi|229357765|gb|EEO22682.1| tmRNA-binding protein SmpB [Vibrio cholerae BX 330286] gi|229371217|gb|ACQ61640.1| tmRNA-binding protein SmpB [Vibrio cholerae MJ-1236] gi|254843690|gb|EET22104.1| conserved hypothetical protein [Vibrio cholerae MO10] gi|255737679|gb|EET93073.1| tmRNA-binding protein SmpB [Vibrio cholera CIRS 101] gi|258582513|gb|EEW07349.1| SsrA-binding protein [Vibrio mimicus VM603] gi|260838702|gb|EEX65353.1| tmRNA-binding protein SmpB [Vibrio sp. RC341] gi|262022843|gb|EEY41549.1| tmRNA-binding protein SmpB [Vibrio cholerae RC27] gi|262024826|gb|EEY43494.1| tmRNA-binding protein SmpB [Vibrio mimicus VM223] gi|262028971|gb|EEY47624.1| tmRNA-binding protein SmpB [Vibrio cholerae INDRE 91/1] gi|262032140|gb|EEY50712.1| tmRNA-binding protein SmpB [Vibrio cholerae CT 5369-93] gi|262351582|gb|EEZ00715.1| tmRNA-binding protein SmpB [Vibrio sp. RC586] gi|297543356|gb|EFH79406.1| SsrA-binding protein [Vibrio cholerae MAK 757] gi|327483594|gb|AEA78001.1| tmRNA-binding protein SmpB [Vibrio cholerae LMA3894-4] Length = 161 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY + Sbjct: 1 MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL + +Y++ Sbjct: 61 DGEAFISGMTIIPLQQASTHVVANPTRIRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +A+GKK +DKRE K+++W RQK R+++ Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157 >gi|145634157|ref|ZP_01789868.1| SsrA-binding protein [Haemophilus influenzae PittAA] gi|148828156|ref|YP_001292909.1| SsrA-binding protein [Haemophilus influenzae PittGG] gi|229843960|ref|ZP_04464101.1| SsrA-binding protein [Haemophilus influenzae 6P18H1] gi|166223222|sp|A5UIC0|SSRP_HAEIG RecName: Full=SsrA-binding protein gi|145268601|gb|EDK08594.1| SsrA-binding protein [Haemophilus influenzae PittAA] gi|148719398|gb|ABR00526.1| SsrA-binding protein [Haemophilus influenzae PittGG] gi|229812954|gb|EEP48642.1| SsrA-binding protein [Haemophilus influenzae 6P18H1] Length = 161 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSIRAGKANISDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ + Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKS-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKR+ K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156 >gi|83720114|ref|YP_442573.1| SsrA-binding protein [Burkholderia thailandensis E264] gi|167581501|ref|ZP_02374375.1| SsrA-binding protein [Burkholderia thailandensis TXDOH] gi|167619612|ref|ZP_02388243.1| SsrA-binding protein [Burkholderia thailandensis Bt4] gi|167837017|ref|ZP_02463900.1| SsrA-binding protein [Burkholderia thailandensis MSMB43] gi|257138782|ref|ZP_05587044.1| SsrA-binding protein [Burkholderia thailandensis E264] gi|123536954|sp|Q2SWX6|SSRP_BURTA RecName: Full=SsrA-binding protein gi|83653939|gb|ABC38002.1| SsrA-binding protein [Burkholderia thailandensis E264] Length = 148 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|326564265|gb|EGE14495.1| SsrA-binding protein [Moraxella catarrhalis 103P14B1] gi|326574758|gb|EGE24694.1| SsrA-binding protein [Moraxella catarrhalis 101P30B1] Length = 154 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 96/158 (60%), Gaps = 7/158 (4%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P + N+KAR+ Y I ++EAG+VL G EVKS+R K++I++SY F+N Sbjct: 1 MAKK-----PSNQICANKKARHEYFIEETYEAGLVLEGWEVKSIRAGKMSITESYGIFKN 55 Query: 61 DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E +L ++I P + N R RKLLL++REI +LY V + G +V + Y+ Sbjct: 56 NEAFLFGAHIQPLLTSSTHINPDNIRTRKLLLNRREIDKLYGMVNQKGYAVVALSCYWK- 114 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K ++ALA+GKK +DKR T K+RD+ R K R + Sbjct: 115 HGRVKCEIALAKGKKLHDKRATLKERDFARDKQRGFKN 152 >gi|21242264|ref|NP_641846.1| SsrA-binding protein [Xanthomonas axonopodis pv. citri str. 306] gi|23822170|sp|Q8PMB9|SSRP_XANAC RecName: Full=SsrA-binding protein gi|21107690|gb|AAM36382.1| small protein B [Xanthomonas axonopodis pv. citri str. 306] Length = 167 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 101/165 (61%), Gaps = 7/165 (4%) Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y Sbjct: 1 MSKKQTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR+RKLLL + EI ++ + V R+G TLVP Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLSRVEREGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164 >gi|312796271|ref|YP_004029193.1| SsrA-binding protein [Burkholderia rhizoxinica HKI 454] gi|312168046|emb|CBW75049.1| SsrA-binding protein [Burkholderia rhizoxinica HKI 454] Length = 149 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 60/145 (41%), Positives = 89/145 (61%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DN+KA ++Y I +EAG+VL G EVK+LR + I + Y N E++L ++I Sbjct: 3 IIDNKKAFFDYFIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIRNGELFLIGTHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL+ EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 QTASTHVHADPVRTRKLLLNADEIRKLIGKVEQRGYTLVPLNFHYK-NGRVKCEIGLARG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRETEKKRDW R+K ++L+ Sbjct: 122 KKLHDKRETEKKRDWQREKAQLLKN 146 >gi|71898358|ref|ZP_00680531.1| SmpB protein [Xylella fastidiosa Ann-1] gi|71731881|gb|EAO33939.1| SmpB protein [Xylella fastidiosa Ann-1] Length = 167 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K++ K ++ N++AR+ YH++ EAG+ L G EVK++R + N+ D YA + EI Sbjct: 9 KAKSTTTPKTIALNKRARHEYHLIERHEAGLELQGWEVKAIRAGRANLGDGYAYVRDGEI 68 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I +Q + RR RKLLL +R+I L V+R+G TLVP IY++ K Sbjct: 69 FLIGAQITPLIQASTHVVANDRRTRKLLLHRRQIDTLIGRVQREGFTLVPTAIYWS-KNR 127 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GK+ +DKR EK+R+W R K RI+R HN Sbjct: 128 VKMEIALAKGKQAHDKRHAEKEREWQRDKQRIMRAHN 164 >gi|254797147|ref|YP_003081985.1| SsrA-binding protein [Neorickettsia risticii str. Illinois] gi|254590383|gb|ACT69745.1| SsrA-binding protein [Neorickettsia risticii str. Illinois] Length = 147 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 69/141 (48%), Positives = 101/141 (71%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y +V FEAGIVL GTEVK+L+ ++++++ F E+WL N ++P Sbjct: 2 KVIATNKKARFDYSLVDEFEAGIVLLGTEVKALKYHSASLNEAFVAFRRFELWLNNMHVP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A+R NH P R+RKLL+ KR+++++ AVR G+TLVP+ IY N GL K+ ALA+ Sbjct: 62 PYKPASRSNHVPTRSRKLLVHKRQLNKISGAVRTKGLTLVPLSIYVNENGLIKVKFALAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKH 152 GKK YDKR+ K RDW R++ Sbjct: 122 GKKKYDKRQDIKDRDWARKQA 142 >gi|330817419|ref|YP_004361124.1| SsrA-binding protein [Burkholderia gladioli BSR3] gi|327369812|gb|AEA61168.1| SsrA-binding protein [Burkholderia gladioli BSR3] Length = 150 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVIVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRETEKKRDW+R+K RI+R+ Sbjct: 122 KKLHDKRETEKKRDWEREKARIMRD 146 >gi|253682580|ref|ZP_04863377.1| SsrA-binding protein [Clostridium botulinum D str. 1873] gi|253562292|gb|EES91744.1| SsrA-binding protein [Clostridium botulinum D str. 1873] Length = 156 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + N ++ NRKA + Y I +FEAGI L GTEVKS+R K N+ DSYA+ +N Sbjct: 1 MAKDKKNN----TLAQNRKAHHEYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIKN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I Y Q N FN P R RKLLL K +I+ L + G TL+P+ +Y K Sbjct: 57 GEVFVCNMHISPYEQGNIFNKDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLK-K 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKKNYDKR+ + R R ++E Sbjct: 116 GRVKVALGVAKGKKNYDKRDAIAAKSAKRDIDRQMKER 153 >gi|312128404|ref|YP_003993278.1| ssra-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311778423|gb|ADQ07909.1| SsrA-binding protein [Caldicellulosiruptor hydrothermalis 108] Length = 158 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ KV++ NRKA ++Y I + EAGI L GTEVKS+R+ VN+ DS+A EN E++ Sbjct: 4 AKKQDDIKVIATNRKAYHDYFIEETIEAGIELKGTEVKSVRLGHVNLKDSFARVENGEVF 63 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y + N FN P R+RKLLL K EI+RL V++ G TL+P+KIY +G K Sbjct: 64 LYNMHISPYEKGNIFNVDPMRDRKLLLHKHEINRLAGYVQQKGYTLIPLKIYIK-RGKIK 122 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++LA+A+GKK YDKRE KRD + + + ++E+ Sbjct: 123 VELAVAKGKKLYDKREAIAKRDAELEIKKKMKEY 156 >gi|331087074|ref|ZP_08336148.1| SsrA-binding protein [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409354|gb|EGG88801.1| SsrA-binding protein [Lachnospiraceae bacterium 9_1_43BFAA] Length = 155 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K ++ +S+ EN E+++ Sbjct: 3 KTSTKLIANNKKAYHDYFILDTYEAGIALHGTEVKSLRMGKCSVKESFIRVENGEVFIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K EI+++ + GM +VP+K+YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRPRKLLLHKAEINKMIGKTKEKGMAIVPLKVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR K+D R+ R + N Sbjct: 122 GLARGKKLYDKRNDIAKKDQQREAQRDFKIRN 153 >gi|325914028|ref|ZP_08176384.1| SsrA-binding protein [Xanthomonas vesicatoria ATCC 35937] gi|325539797|gb|EGD11437.1| SsrA-binding protein [Xanthomonas vesicatoria ATCC 35937] Length = 167 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D Y Sbjct: 1 MSKKPSKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164 >gi|257870207|ref|ZP_05649860.1| SsrA-binding protein [Enterococcus gallinarum EG2] gi|257804371|gb|EEV33193.1| SsrA-binding protein [Enterococcus gallinarum EG2] Length = 152 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++ N+KAR++Y I+ + EAGIVL GTE+KS+R S++N+ D + N E +L N +I Sbjct: 7 RLIAQNKKARHDYTILDTIEAGIVLQGTEIKSIRNSRINLKDGFVRIRNGEAYLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL + GMT+VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIARLIGESKNTGMTIVPLKVYIKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK+ YDKRET K++D +RQ R LR Sbjct: 126 GKREYDKRETLKRKDQERQIDRALRNF 152 >gi|228903600|ref|ZP_04067721.1| hypothetical protein bthur0014_47580 [Bacillus thuringiensis IBL 4222] gi|228942261|ref|ZP_04104800.1| hypothetical protein bthur0008_48910 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228981829|ref|ZP_04142124.1| hypothetical protein bthur0002_49880 [Bacillus thuringiensis Bt407] gi|228777941|gb|EEM26213.1| hypothetical protein bthur0002_49880 [Bacillus thuringiensis Bt407] gi|228817305|gb|EEM63391.1| hypothetical protein bthur0008_48910 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228856029|gb|EEN00568.1| hypothetical protein bthur0014_47580 [Bacillus thuringiensis IBL 4222] gi|326942916|gb|AEA18812.1| SsrA-binding protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 155 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R+ R+ Sbjct: 126 GKKQYDKRHDLKEKEAKREIARVFRDR 152 >gi|260588165|ref|ZP_05854078.1| SsrA-binding protein [Blautia hansenii DSM 20583] gi|260541692|gb|EEX22261.1| SsrA-binding protein [Blautia hansenii DSM 20583] Length = 156 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS +++++N+KA ++Y I ++EAGI L GTEVKSLR+ K +I +S+ + Sbjct: 1 MAKKSEN----RLIANNKKAYHDYFIEDTYEAGIALAGTEVKSLRMGKCSIKESFIQIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLLL EI ++ +R G TLVP+K+YF Sbjct: 57 GEVFIFGMHISPYEKGNIFNKDPLRVRKLLLHSYEIRKIEGKIREKGYTLVPLKVYFKGS 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ +A+GKK YDKR+ K+D R+ R + N Sbjct: 117 -LVKVEIGVAKGKKLYDKRQDIAKKDQRRETEREFKVKN 154 >gi|77359790|ref|YP_339365.1| SsrA-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|123587286|sp|Q3IE36|SSRP_PSEHT RecName: Full=SsrA-binding protein gi|76874701|emb|CAI85922.1| SsrA-binding protein (small protein B) [Pseudoalteromonas haloplanktis TAC125] Length = 159 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNI+++Y +N Sbjct: 1 MAKNKSSKSTSNTIALNKKARHEYFLHDKFEAGVELQGWEVKSIRAGKVNITETYIHLKN 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLLS+RE+ RL A RDG +L+ +Y+ Sbjct: 61 GEAFLLGAQIQPLNSASTHVICDPLRYRKLLLSRRELDRLVGATERDGYSLIATAMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++ LA+GKK +DKRE K +DW R+K R+++ Sbjct: 120 NCWVKLEFHLAKGKKLHDKREDGKDKDWSREKERLMKHK 158 >gi|30265131|ref|NP_847508.1| SsrA-binding protein [Bacillus anthracis str. Ames] gi|47530641|ref|YP_021990.1| SsrA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49187942|ref|YP_031195.1| SsrA-binding protein [Bacillus anthracis str. Sterne] gi|49481124|ref|YP_039115.1| SsrA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140442|ref|YP_086388.1| SsrA-binding protein [Bacillus cereus E33L] gi|65317077|ref|ZP_00390036.1| COG0691: tmRNA-binding protein [Bacillus anthracis str. A2012] gi|118480166|ref|YP_897317.1| SsrA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|165869898|ref|ZP_02214555.1| SsrA-binding protein [Bacillus anthracis str. A0488] gi|167641766|ref|ZP_02400008.1| SsrA-binding protein [Bacillus anthracis str. A0193] gi|170689381|ref|ZP_02880574.1| SsrA-binding protein [Bacillus anthracis str. A0465] gi|196032955|ref|ZP_03100368.1| SsrA-binding protein [Bacillus cereus W] gi|196039566|ref|ZP_03106871.1| SsrA-binding protein [Bacillus cereus NVH0597-99] gi|196045605|ref|ZP_03112835.1| SsrA-binding protein [Bacillus cereus 03BB108] gi|218906300|ref|YP_002454134.1| SsrA-binding protein [Bacillus cereus AH820] gi|225867073|ref|YP_002752451.1| SsrA-binding protein [Bacillus cereus 03BB102] gi|227817863|ref|YP_002817872.1| SsrA-binding protein [Bacillus anthracis str. CDC 684] gi|228917730|ref|ZP_04081271.1| hypothetical protein bthur0012_49340 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930127|ref|ZP_04093137.1| hypothetical protein bthur0010_48090 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936412|ref|ZP_04099210.1| hypothetical protein bthur0009_48490 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948830|ref|ZP_04111105.1| hypothetical protein bthur0007_49530 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094214|ref|ZP_04225293.1| hypothetical protein bcere0021_49240 [Bacillus cereus Rock3-42] gi|229124629|ref|ZP_04253814.1| hypothetical protein bcere0016_49130 [Bacillus cereus 95/8201] gi|229158692|ref|ZP_04286750.1| hypothetical protein bcere0010_48650 [Bacillus cereus ATCC 4342] gi|229600689|ref|YP_002869324.1| SsrA-binding protein [Bacillus anthracis str. A0248] gi|254686467|ref|ZP_05150326.1| SsrA-binding protein [Bacillus anthracis str. CNEVA-9066] gi|254724466|ref|ZP_05186250.1| SsrA-binding protein [Bacillus anthracis str. A1055] gi|254735674|ref|ZP_05193381.1| SsrA-binding protein [Bacillus anthracis str. Western North America USA6153] gi|254744240|ref|ZP_05201920.1| SsrA-binding protein [Bacillus anthracis str. Kruger B] gi|254756992|ref|ZP_05209020.1| SsrA-binding protein [Bacillus anthracis str. Australia 94] gi|301056587|ref|YP_003794798.1| SsrA-binding protein [Bacillus anthracis CI] gi|33301606|sp|Q81XA8|SSRP_BACAN RecName: Full=SsrA-binding protein gi|61216462|sp|Q631M9|SSRP_BACCZ RecName: Full=SsrA-binding protein gi|61216512|sp|Q6HBG1|SSRP_BACHK RecName: Full=SsrA-binding protein gi|166222359|sp|A0RKR7|SSRP_BACAH RecName: Full=SsrA-binding protein gi|226734244|sp|B7JFF5|SSRP_BACC0 RecName: Full=SsrA-binding protein gi|254778342|sp|C3P072|SSRP_BACAA RecName: Full=SsrA-binding protein gi|254778343|sp|C3LDE9|SSRP_BACAC RecName: Full=SsrA-binding protein gi|254778344|sp|C1EZ92|SSRP_BACC3 RecName: Full=SsrA-binding protein gi|30259808|gb|AAP28994.1| SsrA-binding protein [Bacillus anthracis str. Ames] gi|47505789|gb|AAT34465.1| SsrA-binding protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49181869|gb|AAT57245.1| SsrA-binding protein [Bacillus anthracis str. Sterne] gi|49332680|gb|AAT63326.1| ssrA-binding protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973911|gb|AAU15461.1| ssrA-binding protein [Bacillus cereus E33L] gi|118419391|gb|ABK87810.1| SsrA-binding protein [Bacillus thuringiensis str. Al Hakam] gi|164714221|gb|EDR19741.1| SsrA-binding protein [Bacillus anthracis str. A0488] gi|167510249|gb|EDR85653.1| SsrA-binding protein [Bacillus anthracis str. A0193] gi|170666677|gb|EDT17447.1| SsrA-binding protein [Bacillus anthracis str. A0465] gi|195994384|gb|EDX58339.1| SsrA-binding protein [Bacillus cereus W] gi|196023436|gb|EDX62113.1| SsrA-binding protein [Bacillus cereus 03BB108] gi|196029726|gb|EDX68328.1| SsrA-binding protein [Bacillus cereus NVH0597-99] gi|218538420|gb|ACK90818.1| SsrA-binding protein [Bacillus cereus AH820] gi|225788634|gb|ACO28851.1| SsrA-binding protein [Bacillus cereus 03BB102] gi|227006068|gb|ACP15811.1| SsrA-binding protein [Bacillus anthracis str. CDC 684] gi|228624676|gb|EEK81445.1| hypothetical protein bcere0010_48650 [Bacillus cereus ATCC 4342] gi|228658969|gb|EEL14624.1| hypothetical protein bcere0016_49130 [Bacillus cereus 95/8201] gi|228689206|gb|EEL43028.1| hypothetical protein bcere0021_49240 [Bacillus cereus Rock3-42] gi|228810792|gb|EEM57138.1| hypothetical protein bthur0007_49530 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823244|gb|EEM69078.1| hypothetical protein bthur0009_48490 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829626|gb|EEM75253.1| hypothetical protein bthur0010_48090 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841967|gb|EEM87073.1| hypothetical protein bthur0012_49340 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265097|gb|ACQ46734.1| SsrA-binding protein [Bacillus anthracis str. A0248] gi|300378756|gb|ADK07660.1| SsrA-binding protein [Bacillus cereus biovar anthracis str. CI] gi|324329031|gb|ADY24291.1| SsrA-binding protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 155 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLAGASKETGYALVPVRIYLK-NGFAKMAL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKR K+++ R+ R R+ Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|206900869|ref|YP_002251065.1| SsrA-binding protein [Dictyoglomus thermophilum H-6-12] gi|206739972|gb|ACI19030.1| SsrA-binding protein [Dictyoglomus thermophilum H-6-12] Length = 153 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 73/135 (54%), Positives = 96/135 (71%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KK+V+ NRKAR++Y I+ +FEAGI LTGTEVKSLR KV++ DSYA +N E+W+ N Sbjct: 3 KGKKIVAVNRKARHDYSILETFEAGIALTGTEVKSLRNGKVSLQDSYADVKNGEVWIYNL 62 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y N +NH P+R RKLLL+K EI L V+ G+TL+P+ IYFN +G AK++L Sbjct: 63 HISPYEHGNIYNHDPKRPRKLLLNKDEIAYLVGKVKERGLTLIPLSIYFNERGWAKVELG 122 Query: 129 LAQGKKNYDKRETEK 143 LA+GKK YDKR Sbjct: 123 LAKGKKLYDKRRDIA 137 >gi|104780005|ref|YP_606503.1| SsrA-binding protein [Pseudomonas entomophila L48] gi|166223239|sp|Q1IF66|SSRP_PSEE4 RecName: Full=SsrA-binding protein gi|95108992|emb|CAK13688.1| ssrA-binding protein [Pseudomonas entomophila L48] Length = 160 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K +++DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLTDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL+KRE+ RL AAV + G T V M +Y++ Sbjct: 59 GEAWLFGSHITPLTTASTHVIADPIRTRKLLLNKRELERLEAAVAQKGYTCVAMSLYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK +DKR+T ++RD +R+ R +R Sbjct: 119 H-LIKCEIALGKGKKEFDKRDTVRERDSNRELQRTMRNK 156 >gi|167755321|ref|ZP_02427448.1| hypothetical protein CLORAM_00834 [Clostridium ramosum DSM 1402] gi|237734211|ref|ZP_04564692.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167704260|gb|EDS18839.1| hypothetical protein CLORAM_00834 [Clostridium ramosum DSM 1402] gi|229382771|gb|EEO32862.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 150 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 103/149 (69%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K+VS+N+KA ++Y I+ ++EAGI L GTE+KS+R+ VN+ D++ +++E ++ N + Sbjct: 2 GMKIVSNNKKAYHDYFILDTYEAGIELKGTEIKSVRLGNVNLKDAFVRIKDNEAYIENMH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N+FNH P RNRKLLL K+EI ++ ++ G+T+VP K+YFN K+++ + Sbjct: 62 ISPYSHGNQFNHEPLRNRKLLLHKKEILKISNKLKEGGLTVVPTKLYFNTGSKVKLEIGI 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK YDKR+ K+RD R+ + L+ + Sbjct: 122 ARGKKLYDKRQDLKERDSKREIEKALKNY 150 >gi|330719319|ref|ZP_08313919.1| SsrA-binding protein [Leuconostoc fallax KCTC 3537] Length = 153 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 75/157 (47%), Positives = 103/157 (65%), Gaps = 4/157 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K N V++ NRKAR+NY+I+ ++EAGI LTGTE+KS+R ++ ISD + T N Sbjct: 1 MAKK---NVNDNVIAQNRKARFNYNIIDTYEAGIALTGTEIKSVRAGQITISDGFVTVHN 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 LTN +I Y Q N+FN P R R+LLL KREI L AV+ G+T+VP+K+Y Sbjct: 58 KTALLTNVHISTYAQGNQFNVDPLRTRQLLLHKREIVALEKAVQESGITIVPLKVYMK-H 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+ + + QGKK YDKRE K+RD +R+ R L+ Sbjct: 117 GFAKVLIGIGQGKKKYDKREDIKRRDQERELGRRLKH 153 >gi|139438926|ref|ZP_01772386.1| Hypothetical protein COLAER_01392 [Collinsella aerofaciens ATCC 25986] gi|133775637|gb|EBA39457.1| Hypothetical protein COLAER_01392 [Collinsella aerofaciens ATCC 25986] Length = 156 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 88/153 (57%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K++S NR A + Y I +FE GI L+GTEVKS+R I+D++A E WL Sbjct: 3 SKRERKLISKNRSAHHEYFIDETFECGIELSGTEVKSIRERACQITDTFALIRGGECWLV 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y +N P R R+LLL ++EI L +R G LVP+++YFN G K+ Sbjct: 63 GLHIHPYSHGGVWNRDPDRRRRLLLHRKEIDFLDGKLRNRGYALVPLELYFNTDGRVKLL 122 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L L +GKK YDKRE KRD R+ R L+E N Sbjct: 123 LGLGRGKKLYDKREDMAKRDVQREIDRALKERN 155 >gi|108763344|ref|YP_630286.1| SsrA-binding protein [Myxococcus xanthus DK 1622] gi|123374695|sp|Q1DAN7|SSRP_MYXXD RecName: Full=SsrA-binding protein gi|108467224|gb|ABF92409.1| SsrA-binding protein [Myxococcus xanthus DK 1622] Length = 162 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 S P +V+++NR+AR++Y + EAG+ LTG+EVKSLR N+SD+YA + D Sbjct: 7 SKGVGSEPGVRVIAENRRARFDYTVDEKVEAGLALTGSEVKSLRDGIANLSDAYALPKGD 66 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E++L N+ I Y A+ F+H P R RKLL+ + EI R A VR G +++P+ +YF G Sbjct: 67 ELFLLNANIGSYKAASFFDHLPTRGRKLLMHRGEIDRWTAKVRERGYSIIPLVLYFR-NG 125 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++L L +GK + D+R K+R+ R+ R +R Sbjct: 126 RAKVELGLCRGKTHEDRRHDIKERETKREMDRAMRRR 162 >gi|228993833|ref|ZP_04153737.1| hypothetical protein bpmyx0001_45570 [Bacillus pseudomycoides DSM 12442] gi|228999859|ref|ZP_04159431.1| hypothetical protein bmyco0003_44120 [Bacillus mycoides Rock3-17] gi|229007413|ref|ZP_04165010.1| hypothetical protein bmyco0002_42920 [Bacillus mycoides Rock1-4] gi|228753801|gb|EEM03242.1| hypothetical protein bmyco0002_42920 [Bacillus mycoides Rock1-4] gi|228759801|gb|EEM08775.1| hypothetical protein bmyco0003_44120 [Bacillus mycoides Rock3-17] gi|228765889|gb|EEM14539.1| hypothetical protein bpmyx0001_45570 [Bacillus pseudomycoides DSM 12442] Length = 164 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 97/154 (62%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 KV++ N+K ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W Sbjct: 9 KMPKGSGKVIAQNKKVFHDYFIDETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVW 68 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + N +I Y Q NRFNH P R RKLLL K+EI +L + G TLVP+KIY G AK Sbjct: 69 VYNMHISPYEQGNRFNHEPLRTRKLLLHKKEIDKLIGYSKETGYTLVPVKIYLK-NGFAK 127 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +A+GKK YDKR K+++ R+ R R+ Sbjct: 128 MALGVARGKKQYDKRHDLKEKEAKREIARAFRDR 161 >gi|330814150|ref|YP_004358389.1| tmRNA-binding protein SmpB [Candidatus Pelagibacter sp. IMCC9063] gi|327487245|gb|AEA81650.1| tmRNA-binding protein SmpB [Candidatus Pelagibacter sp. IMCC9063] Length = 157 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 88/155 (56%), Positives = 112/155 (72%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + P +V NRKA +N+ E+GI L G EVKSLR K IS+SYAT + E Sbjct: 1 MSVKKKPVDNIVCQNRKASFNFFFEEIVESGIELVGPEVKSLRSGKATISESYATDQEGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I+L NSYIP+YLQ++ NH P+RNRKLLL KREI +L + RDG +LVP KIYFN KG+ Sbjct: 61 IFLINSYIPQYLQSSYNNHDPKRNRKLLLKKREISKLIGKINRDGYSLVPTKIYFNKKGI 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ +ALA+GKKN+DKRET+K RDWDR+K RI R+ Sbjct: 121 AKVQIALAKGKKNHDKRETKKNRDWDREKSRIFRK 155 >gi|291534156|emb|CBL07269.1| SsrA-binding protein [Megamonas hypermegale ART12/1] Length = 157 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 78/153 (50%), Positives = 104/153 (67%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N K+V +NRKAR++Y I ++EAGIVL GTEVKSLR K N+ DS+A +N+EI+L Sbjct: 3 KKNASVKIVCENRKARHDYFIHETYEAGIVLVGTEVKSLRAGKANLKDSFAKIKNNEIFL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y Q N FNH P R RKLL+ K EI +L + ++ G TLVP+K+YF+ KG AK+ Sbjct: 63 DNMHISPYEQGNIFNHDPLRARKLLMHKIEIVKLSSKIKEKGFTLVPLKVYFS-KGRAKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L LA GKKNYDKR+ ++ R R L+E Sbjct: 122 ALGLATGKKNYDKRQALAEKVAKRDVERALKER 154 >gi|206889318|ref|YP_002249012.1| SsrA-binding protein [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741256|gb|ACI20313.1| SsrA-binding protein [Thermodesulfovibrio yellowstonii DSM 11347] Length = 149 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 71/149 (47%), Positives = 97/149 (65%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K+V N+KA +Y I + EAGIVLTGTEVKSLR K N+ DSY +++E WL N + Sbjct: 2 SIKIVCQNKKAYADYFIDETIEAGIVLTGTEVKSLRQGKANLKDSYVIIKDNEAWLLNCH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N FNH P R RKLLL K+EI RL +++ G TL+P+KIYF K+++AL Sbjct: 62 ISPYSHGNIFNHDPLRTRKLLLHKKEIERLRGKIQQQGYTLIPLKIYFKGP-YVKVEIAL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+G+K Y+KR+ KK++ R+ R L+ Sbjct: 121 ARGRKKYEKRDIIKKKEAQREIERALKNK 149 >gi|315606126|ref|ZP_07881157.1| SsrA-binding protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312408|gb|EFU60494.1| SsrA-binding protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 175 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 96/154 (62%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KK ++ N+KAR++Y I ++EAG+ L GTEVK+LR+ + ++ D++ E W Sbjct: 17 KAASDAKKTIARNKKARHDYTIEDTWEAGLSLMGTEVKALRMGRASLVDAWVEINGGEAW 76 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IP Y Q + NH P R RKLLL + EI R+ V G T+VP+++YF G K Sbjct: 77 LYGANIPLYSQGSWTNHAPTRKRKLLLHRAEIDRMADRVSAKGYTIVPLELYFIG-GRVK 135 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ALA+GK+ +DKR+ +++ R+ R +R + Sbjct: 136 VEIALAKGKQEWDKRQALREKQDQREAERAIRRY 169 >gi|89091956|ref|ZP_01164911.1| SsrA-binding protein [Oceanospirillum sp. MED92] gi|89083691|gb|EAR62908.1| SsrA-binding protein [Oceanospirillum sp. MED92] Length = 157 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/156 (39%), Positives = 85/156 (54%), Gaps = 3/156 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + P + N+K R+ Y I FEAG+ LTG EVKSLR + + DSY Sbjct: 1 MAKKKKA-PSGNTICQNKKVRHEYIIEDKFEAGLSLTGWEVKSLREGRAQLVDSYVVIHK 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL ++ P R+RKLLL +REI ++ A + G T V + IY+ Sbjct: 60 GEAWLVGAHFTPLKTACTHVVADPTRDRKLLLHRREIDKIIGATQAKGYTCVALSIYWKQ 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K ++ALA+GKK +DKR +K RDW RQK R++ Sbjct: 120 NH-IKCEIALAKGKKQHDKRAADKDRDWARQKQRLM 154 >gi|148264140|ref|YP_001230846.1| SsrA-binding protein [Geobacter uraniireducens Rf4] gi|189046829|sp|A5G3A5|SSRP_GEOUR RecName: Full=SsrA-binding protein gi|146397640|gb|ABQ26273.1| SsrA-binding protein [Geobacter uraniireducens Rf4] Length = 151 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 73/150 (48%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I FEAG+VL GTEVKSLR+ K N++DS+A +N E +L N + Sbjct: 2 SEKLICNNKKAYHDYFIEEKFEAGMVLKGTEVKSLRIGKANLNDSFALVKNGEAFLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLLL K+EI +L++ +R G T+VP+++YF GL K+++ L Sbjct: 62 ISPYDFGNRENHDPDRMRKLLLHKKEIGKLFSMIREQGYTVVPLRLYFKD-GLVKVEVGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R L+E N Sbjct: 121 AKGKKLYDKREDMKKKDMRRDVAVALKERN 150 >gi|53719746|ref|YP_108732.1| SsrA-binding protein [Burkholderia pseudomallei K96243] gi|53723716|ref|YP_103172.1| SsrA-binding protein [Burkholderia mallei ATCC 23344] gi|67641688|ref|ZP_00440457.1| SsrA-binding protein [Burkholderia mallei GB8 horse 4] gi|76811028|ref|YP_333950.1| SsrA-binding protein [Burkholderia pseudomallei 1710b] gi|121601426|ref|YP_993348.1| SsrA-binding protein [Burkholderia mallei SAVP1] gi|124385560|ref|YP_001029216.1| SsrA-binding protein [Burkholderia mallei NCTC 10229] gi|126441609|ref|YP_001059444.1| SsrA-binding protein [Burkholderia pseudomallei 668] gi|126448860|ref|YP_001080854.1| SsrA-binding protein [Burkholderia mallei NCTC 10247] gi|126453935|ref|YP_001066726.1| SsrA-binding protein [Burkholderia pseudomallei 1106a] gi|134278041|ref|ZP_01764756.1| SsrA-binding protein [Burkholderia pseudomallei 305] gi|167000576|ref|ZP_02266387.1| SsrA-binding protein [Burkholderia mallei PRL-20] gi|167720138|ref|ZP_02403374.1| SsrA-binding protein [Burkholderia pseudomallei DM98] gi|167739145|ref|ZP_02411919.1| SsrA-binding protein [Burkholderia pseudomallei 14] gi|167816355|ref|ZP_02448035.1| SsrA-binding protein [Burkholderia pseudomallei 91] gi|167824734|ref|ZP_02456205.1| SsrA-binding protein [Burkholderia pseudomallei 9] gi|167846268|ref|ZP_02471776.1| SsrA-binding protein [Burkholderia pseudomallei B7210] gi|167894848|ref|ZP_02482250.1| SsrA-binding protein [Burkholderia pseudomallei 7894] gi|167903238|ref|ZP_02490443.1| SsrA-binding protein [Burkholderia pseudomallei NCTC 13177] gi|167911478|ref|ZP_02498569.1| SsrA-binding protein [Burkholderia pseudomallei 112] gi|167919489|ref|ZP_02506580.1| SsrA-binding protein [Burkholderia pseudomallei BCC215] gi|217421443|ref|ZP_03452947.1| SsrA-binding protein [Burkholderia pseudomallei 576] gi|226200139|ref|ZP_03795685.1| SsrA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237812783|ref|YP_002897234.1| SsrA-binding protein [Burkholderia pseudomallei MSHR346] gi|242314586|ref|ZP_04813602.1| SsrA-binding protein [Burkholderia pseudomallei 1106b] gi|254179345|ref|ZP_04885944.1| SsrA-binding protein [Burkholderia pseudomallei 1655] gi|254189268|ref|ZP_04895779.1| SsrA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|254197660|ref|ZP_04904082.1| SsrA-binding protein [Burkholderia pseudomallei S13] gi|254200123|ref|ZP_04906489.1| SsrA-binding protein [Burkholderia mallei FMH] gi|254206461|ref|ZP_04912813.1| SsrA-binding protein [Burkholderia mallei JHU] gi|254261679|ref|ZP_04952733.1| SsrA-binding protein [Burkholderia pseudomallei 1710a] gi|254297229|ref|ZP_04964682.1| SsrA-binding protein [Burkholderia pseudomallei 406e] gi|254358130|ref|ZP_04974403.1| SsrA-binding protein [Burkholderia mallei 2002721280] gi|61216460|sp|Q62JE7|SSRP_BURMA RecName: Full=SsrA-binding protein gi|61216467|sp|Q63T34|SSRP_BURPS RecName: Full=SsrA-binding protein gi|123598746|sp|Q3JR53|SSRP_BURP1 RecName: Full=SsrA-binding protein gi|166222367|sp|A3MKR8|SSRP_BURM7 RecName: Full=SsrA-binding protein gi|166222368|sp|A2SB97|SSRP_BURM9 RecName: Full=SsrA-binding protein gi|166222369|sp|A1V545|SSRP_BURMS RecName: Full=SsrA-binding protein gi|166222370|sp|A3NWK5|SSRP_BURP0 RecName: Full=SsrA-binding protein gi|166222371|sp|A3NAS3|SSRP_BURP6 RecName: Full=SsrA-binding protein gi|52210160|emb|CAH36139.1| SSRA-binding protein [Burkholderia pseudomallei K96243] gi|52427139|gb|AAU47732.1| SsrA-binding protein [Burkholderia mallei ATCC 23344] gi|76580481|gb|ABA49956.1| SsrA-binding protein [Burkholderia pseudomallei 1710b] gi|121230236|gb|ABM52754.1| SsrA-binding protein [Burkholderia mallei SAVP1] gi|124293580|gb|ABN02849.1| SsrA-binding protein [Burkholderia mallei NCTC 10229] gi|126221102|gb|ABN84608.1| SsrA-binding protein [Burkholderia pseudomallei 668] gi|126227577|gb|ABN91117.1| SsrA-binding protein [Burkholderia pseudomallei 1106a] gi|126241730|gb|ABO04823.1| SsrA-binding protein [Burkholderia mallei NCTC 10247] gi|134251691|gb|EBA51770.1| SsrA-binding protein [Burkholderia pseudomallei 305] gi|147749719|gb|EDK56793.1| SsrA-binding protein [Burkholderia mallei FMH] gi|147753904|gb|EDK60969.1| SsrA-binding protein [Burkholderia mallei JHU] gi|148027257|gb|EDK85278.1| SsrA-binding protein [Burkholderia mallei 2002721280] gi|157807136|gb|EDO84306.1| SsrA-binding protein [Burkholderia pseudomallei 406e] gi|157936947|gb|EDO92617.1| SsrA-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|169654401|gb|EDS87094.1| SsrA-binding protein [Burkholderia pseudomallei S13] gi|184209885|gb|EDU06928.1| SsrA-binding protein [Burkholderia pseudomallei 1655] gi|217395185|gb|EEC35203.1| SsrA-binding protein [Burkholderia pseudomallei 576] gi|225927823|gb|EEH23864.1| SsrA-binding protein [Burkholderia pseudomallei Pakistan 9] gi|237506272|gb|ACQ98590.1| SsrA-binding protein [Burkholderia pseudomallei MSHR346] gi|238522647|gb|EEP86090.1| SsrA-binding protein [Burkholderia mallei GB8 horse 4] gi|242137825|gb|EES24227.1| SsrA-binding protein [Burkholderia pseudomallei 1106b] gi|243063504|gb|EES45690.1| SsrA-binding protein [Burkholderia mallei PRL-20] gi|254220368|gb|EET09752.1| SsrA-binding protein [Burkholderia pseudomallei 1710a] Length = 148 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++ EI+L ++I Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKHAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|307824123|ref|ZP_07654350.1| SsrA-binding protein [Methylobacter tundripaludum SV96] gi|307734907|gb|EFO05757.1| SsrA-binding protein [Methylobacter tundripaludum SV96] Length = 161 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 93/155 (60%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K ++ NR+A + Y I FEAG+VL G EVKSLR ++ + +SY E Sbjct: 7 KKNTKQQNATIAVNRQATFEYSIEERFEAGVVLEGWEVKSLRDGRIQLKESYVVIRRGEA 66 Query: 64 WLTNSYIPE-YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL+ ++I + N R +KLLL + E+++L +V R G TL+P+K+Y+ G Sbjct: 67 WLSGAHISPLLSASTHVNPDSIRAKKLLLHRHELNKLIGSVERKGYTLIPLKMYWK-NGR 125 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+++ LA+GK+ +DKR T K RDW R+K RIL++ Sbjct: 126 AKLEIGLAKGKQLHDKRATSKDRDWQREKGRILKK 160 >gi|304407260|ref|ZP_07388913.1| SsrA-binding protein [Paenibacillus curdlanolyticus YK9] gi|304343701|gb|EFM09542.1| SsrA-binding protein [Paenibacillus curdlanolyticus YK9] Length = 160 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 105/159 (66%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ + K ++ N+KA ++Y I ++EAGIVLTGTE+KS+R + NISD++AT N Sbjct: 1 MAKQTHDS---KPLAQNKKASHDYFIEDTYEAGIVLTGTEIKSVRNGRANISDAFATIRN 57 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+++ N +I + Q NR N P R RKLLL K +IH+L +++G T+VP+KIY Sbjct: 58 GEMFVHNMHISPFEQGNRHNPTDPTRARKLLLHKVQIHKLLGLSKQEGYTIVPLKIYVR- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + L +GKKNYDKR+T KRD R R LRE Sbjct: 117 NGYAKLLIGLGKGKKNYDKRDTAAKRDAQRDIQRALREK 155 >gi|210621920|ref|ZP_03292907.1| hypothetical protein CLOHIR_00852 [Clostridium hiranonis DSM 13275] gi|210154490|gb|EEA85496.1| hypothetical protein CLOHIR_00852 [Clostridium hiranonis DSM 13275] Length = 151 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 1/146 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KV++ N+KAR+ + I ++E GI L GTEVKS+R +VN+ + Y + +N E+++ + Sbjct: 3 GVKVLATNKKARHEFFIEETYECGIELKGTEVKSIRRGRVNLKEGYCSVDNGEVFMKQVH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N FN P R RKLLL K EI +L A G +LVP+ +Y G K+++AL Sbjct: 63 ISPYEHGNIFNVDPLRVRKLLLHKHEIRKLIGATTVKGYSLVPLSMYLK-NGRVKVEIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRIL 155 A+GKK YDKR+ K+D R+ R + Sbjct: 122 AKGKKLYDKRQDLAKKDAKRRIEREM 147 >gi|307692793|ref|ZP_07635030.1| SsrA-binding protein [Ruminococcaceae bacterium D16] Length = 155 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 96/148 (64%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N KA ++Y I +EAGI L GTEVKS+R VN+ DS+ ++ ++ + +I Sbjct: 6 KVVAKNSKAYHDYFIEEKYEAGIELAGTEVKSIRQGHVNLKDSFCHIKDGQMSVIGMHIS 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N FN P R R+LL+ KREI RL+A +++DG +L+P+ +YF K+++ LA+ Sbjct: 66 PYEKGNIFNKDPLRQRRLLMHKREIMRLFAHIKQDGYSLIPLSVYFKGP-RVKLEIGLAK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKRE+ +RD R+ R ++ N Sbjct: 125 GKKLYDKRESAARRDAKREMDRTMKSRN 152 >gi|58581646|ref|YP_200662.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|188577116|ref|YP_001914045.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|67461876|sp|Q5H194|SSRP_XANOR RecName: Full=SsrA-binding protein gi|238689543|sp|B2SQV2|SSRP_XANOP RecName: Full=SsrA-binding protein gi|58426240|gb|AAW75277.1| small protein B [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521568|gb|ACD59513.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 167 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 64/165 (38%), Positives = 101/165 (61%), Gaps = 7/165 (4%) Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D Y Sbjct: 1 MSKKPTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+++ K+++ALA+GK+N+DKR+ K+RDW R K R++R HN Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKERDWQRDKQRVMRRHN 164 >gi|197119380|ref|YP_002139807.1| SsrA-binding protein [Geobacter bemidjiensis Bem] gi|197088740|gb|ACH40011.1| SsrA-binding protein [Geobacter bemidjiensis Bem] Length = 159 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 72/149 (48%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K++ +N+KA ++Y I +EAG+VL GTEVKSLR K N++DS+A +N E +L N +I Sbjct: 5 EKLICNNKKAFHDYFIEERYEAGMVLQGTEVKSLRNGKANLNDSFAMVKNGEAFLHNFHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y NR NH P R RKLLL K+EI +L+A +R G TL+P+++YF G K +L LA Sbjct: 65 NPYDFGNRENHDPDRMRKLLLHKKEIVKLFAKIREQGYTLIPLRVYFKE-GKVKAELGLA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKKNYDKRE K++D R + L++ N Sbjct: 124 KGKKNYDKREVMKEKDMQRDIAQGLKDRN 152 >gi|311069883|ref|YP_003974806.1| SsrA-binding protein [Bacillus atrophaeus 1942] gi|310870400|gb|ADP33875.1| SsrA-binding protein [Bacillus atrophaeus 1942] Length = 156 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 69/150 (46%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV+S N+KA ++Y I ++E GIVL GTE+KS+R +VN+ DS+A E E++L N Sbjct: 3 KGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIEGGEVFLHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NR+NH P R RKLL+ ++EI++L + G +LVP+K+Y G AK+ L Sbjct: 63 MHISPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLK-NGFAKVLL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L +GKKNYDKRE K++D R+ R R+ Sbjct: 122 GLGKGKKNYDKREDLKRKDAKREIERAFRD 151 >gi|262378881|ref|ZP_06072038.1| SsrA-binding protein [Acinetobacter radioresistens SH164] gi|262300166|gb|EEY88078.1| SsrA-binding protein [Acinetobacter radioresistens SH164] Length = 158 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY +N E Sbjct: 5 KVVKKNNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYILLKNGEA 64 Query: 64 WLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I P + R RKLLLSKREI +L AV + G T VP+ Y+ L Sbjct: 65 YLFGAQIQPLLSASTHIVAEATRTRKLLLSKREIEKLMGAVNQKGYTCVPLACYWKGP-L 123 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K+++AL +GK+ +DKR TEK RDW R K RI Sbjct: 124 VKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 156 >gi|218900248|ref|YP_002448659.1| SsrA-binding protein [Bacillus cereus G9842] gi|228968207|ref|ZP_04129206.1| hypothetical protein bthur0004_49860 [Bacillus thuringiensis serovar sotto str. T04001] gi|229099551|ref|ZP_04230479.1| hypothetical protein bcere0020_47690 [Bacillus cereus Rock3-29] gi|229105727|ref|ZP_04236356.1| hypothetical protein bcere0019_48530 [Bacillus cereus Rock3-28] gi|229118616|ref|ZP_04247968.1| hypothetical protein bcere0017_48810 [Bacillus cereus Rock1-3] gi|226734245|sp|B7IP12|SSRP_BACC2 RecName: Full=SsrA-binding protein gi|218545491|gb|ACK97885.1| SsrA-binding protein [Bacillus cereus G9842] gi|228664808|gb|EEL20298.1| hypothetical protein bcere0017_48810 [Bacillus cereus Rock1-3] gi|228677616|gb|EEL31864.1| hypothetical protein bcere0019_48530 [Bacillus cereus Rock3-28] gi|228683847|gb|EEL37797.1| hypothetical protein bcere0020_47690 [Bacillus cereus Rock3-29] gi|228791470|gb|EEM39073.1| hypothetical protein bthur0004_49860 [Bacillus thuringiensis serovar sotto str. T04001] Length = 155 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R+ R+ Sbjct: 126 GKKQYDKRHDLKEKEAKREIARVFRDR 152 >gi|172060947|ref|YP_001808599.1| SsrA-binding protein [Burkholderia ambifaria MC40-6] gi|171993464|gb|ACB64383.1| SsrA-binding protein [Burkholderia ambifaria MC40-6] Length = 148 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIHPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|78047112|ref|YP_363287.1| SsrA-binding protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|294625456|ref|ZP_06704086.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666517|ref|ZP_06731759.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325928721|ref|ZP_08189891.1| SsrA-binding protein [Xanthomonas perforans 91-118] gi|123585460|sp|Q3BVC6|SSRP_XANC5 RecName: Full=SsrA-binding protein gi|78035542|emb|CAJ23188.1| SsrA-binding protein SmpB [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292600223|gb|EFF44330.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603748|gb|EFF47157.1| SsrA-binding protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325540889|gb|EGD12461.1| SsrA-binding protein [Xanthomonas perforans 91-118] Length = 167 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 65/165 (39%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G EVK++R + NI D Y Sbjct: 1 MSKKQTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEVKAIRAGRANIVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164 >gi|293384093|ref|ZP_06629987.1| SsrA-binding protein [Enterococcus faecalis R712] gi|291078573|gb|EFE15937.1| SsrA-binding protein [Enterococcus faecalis R712] Length = 154 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 101/151 (66%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N Sbjct: 3 KGGGKLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + Sbjct: 63 VHISPYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNAGITLVPLKVYIKD-GYAKVLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKRE K+++ DRQ R L+ + Sbjct: 122 GLAKGKKQYDKREDLKRKEVDRQISRTLKNN 152 >gi|153566|gb|AAA26852.1| ORF (19K protein) [Enterococcus faecalis] Length = 163 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I Sbjct: 16 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFVRIRNGEAFLHNVHIS 75 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL + G+T+VP+K+Y G AK+ + LA+ Sbjct: 76 PYEQGNIFNHDPLRTRKLLLHKKQISRLETETKNTGVTIVPLKVYIRD-GYAKVLIGLAK 134 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK+YDKRE K++D DRQ R L+ + Sbjct: 135 GKKSYDKREDLKRKDVDRQIDRTLKNFS 162 >gi|300311517|ref|YP_003775609.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1] gi|300074302|gb|ADJ63701.1| tmRNA-binding protein [Herbaspirillum seropedicae SmR1] Length = 149 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DN+KA ++Y I FEAG+VL G EVKS+R +V + ++Y N E++L +I Sbjct: 3 IIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHISAL 62 Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL+ EI +L V R G TLVP+ +++N KG K D+ LA+G Sbjct: 63 TSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYN-KGRIKCDIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRETEK+RD R+ +++H Sbjct: 122 KKQHDKRETEKQRDSQREIQTAMKQH 147 >gi|229072575|ref|ZP_04205777.1| hypothetical protein bcere0025_47360 [Bacillus cereus F65185] gi|228710551|gb|EEL62524.1| hypothetical protein bcere0025_47360 [Bacillus cereus F65185] Length = 155 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y + ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFLEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R R+ Sbjct: 126 GKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|255283248|ref|ZP_05347803.1| SsrA-binding protein [Bryantella formatexigens DSM 14469] gi|255266102|gb|EET59307.1| SsrA-binding protein [Bryantella formatexigens DSM 14469] Length = 157 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 66/148 (44%), Positives = 98/148 (66%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA ++Y I +FEAGI L GTEVKSLR+ K ++ +S+ EN E+ + +I Sbjct: 7 KLIANNKKAYHDYFIEDTFEAGISLAGTEVKSLRMGKCSVKESFIRIENGEVIIYGMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N FN P R RKLL+ + EI++L ++ GMTLVP+K+YF L K+++ LA+ Sbjct: 67 PYEKGNIFNKDPLRERKLLMHRHEINKLTGKMKEKGMTLVPLKVYFKGS-LVKVEVGLAR 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKRE KRD R+ + +E N Sbjct: 126 GKKLYDKREDIAKRDQRREAEKEFKERN 153 >gi|119775522|ref|YP_928262.1| SsrA-binding protein [Shewanella amazonensis SB2B] gi|166223450|sp|A1S886|SSRP_SHEAM RecName: Full=SsrA-binding protein gi|119768022|gb|ABM00593.1| SsrA-binding protein [Shewanella amazonensis SB2B] Length = 160 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M K S+ ++ N++A + Y FEAG+ L G EVKS+R K+NIS+SY + Sbjct: 1 MVKKNSKKAAQPATIARNKRATFEYKFDEKFEAGLSLMGWEVKSIRAGKINISESYVMLK 60 Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E +L + +I P + + P R RKLLL++RE+ RL V R G +VP+ +Y+ Sbjct: 61 NGEAFLHHCHITPLHAASTHVVCDPTRPRKLLLNRRELDRLAGLVERQGYAIVPISMYWR 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ L +GKK +DKR+ K+RDWD +K R+++ Sbjct: 121 KGAWVKVEIGLGKGKKAHDKRDDIKQRDWDIEKARVMKNK 160 >gi|220928268|ref|YP_002505177.1| SsrA-binding protein [Clostridium cellulolyticum H10] gi|254778354|sp|B8I8G4|SSRP_CLOCE RecName: Full=SsrA-binding protein gi|219998596|gb|ACL75197.1| SsrA-binding protein [Clostridium cellulolyticum H10] Length = 154 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+V+ N+KAR++Y I + EAGIVL+GTEVKS+R K+N+ +SYA+ E+ ++ Sbjct: 3 KEAVKIVAQNKKARHDYFIEETIEAGIVLSGTEVKSVRQGKLNLKESYASIVEGEVIVSG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N FN P R+RKLLL K EI+RL ++ G TLVP++ Y +G+ KI+L Sbjct: 63 MHISPYEQGNIFNKDPLRDRKLLLHKSEINRLIGLTQQKGYTLVPVQAYLK-RGMVKIEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+GKK YDKR+ RD R+ R ++E Sbjct: 122 GVARGKKLYDKRDDIAARDAKREIDRKMKE 151 >gi|227510626|ref|ZP_03940675.1| SsrA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227524786|ref|ZP_03954835.1| SsrA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227088042|gb|EEI23354.1| SsrA-binding protein [Lactobacillus hilgardii ATCC 8290] gi|227190278|gb|EEI70345.1| SsrA-binding protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 157 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +++ N+KAR++Y I+ ++EAGIVLTGTE+KS+R ++N+ D + N Sbjct: 1 MAKRKHKQNNDNLMAQNKKARHDYSILETYEAGIVLTGTEIKSIRDRRINLKDGFVQIRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E ++ N +I EY Q N+FNH P RNRKLLL K+EI +L A + G+T+VP+K+Y + Sbjct: 61 GEAYMVNVHISEYAQGNQFNHDPLRNRKLLLHKKEIRKLGQATQDKGVTIVPLKVYLKS- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GK+ YDKRET K+RD R R+++ Sbjct: 120 GFAKVLIGVAKGKREYDKRETIKRRDEQRTIERVMKRF 157 >gi|295100446|emb|CBK97991.1| SsrA-binding protein [Faecalibacterium prausnitzii L2-6] Length = 160 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 89/154 (57%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ E+ E+ Sbjct: 4 AKERPATKTIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIEDGELL 63 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + +I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K Sbjct: 64 VKGMHITPYDHGNIFNQDPLRVRRLLAHKTEIRRLHQQCKLQGYTLVPLSLYFK-HGRVK 122 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ L +GKK YDKR KRD R R ++ + Sbjct: 123 MEIGLCKGKKLYDKRADAAKRDAKRSIDRAVKSN 156 >gi|227502944|ref|ZP_03932993.1| SsrA-binding protein [Corynebacterium accolens ATCC 49725] gi|227076366|gb|EEI14329.1| SsrA-binding protein [Corynebacterium accolens ATCC 49725] Length = 180 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 75/150 (50%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 ++ NR+AR++Y I+ FE GIVL GTE+KSLR K++++D++AT +N E++L N Sbjct: 26 SGDATLATNRRARHDYKILEEFECGIVLLGTEIKSLREGKISLNDAFATIDNGEVYLRNL 85 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY + NH PRR RKLLL +REI +LY VR TLVP+K+Y G AK+ LA Sbjct: 86 HIPEYSMGSWTNHSPRRTRKLLLHRREIDKLYGQVRNGNKTLVPLKVYLK-NGYAKLSLA 144 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LAQGK++YDKRE K+RD +R+ R L Sbjct: 145 LAQGKQDYDKREDIKRRDQNREITRELGRR 174 >gi|326383349|ref|ZP_08205037.1| SsrA-binding protein [Gordonia neofelifaecis NRRL B-59395] gi|326198099|gb|EGD55285.1| SsrA-binding protein [Gordonia neofelifaecis NRRL B-59395] Length = 157 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 98/150 (65%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K V++ NRKAR+NY I+ +FEAG+VL GTEVK+LR K ++ D++AT ++ E+WL Sbjct: 5 KGKSVIATNRKARHNYTILETFEAGMVLQGTEVKALRDGKASLVDAFATIDDGEVWLNAV 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY NH PRR RKLL+ +REI L +R +TLVP+ +YF+ G AK++LA Sbjct: 65 HIAEYGSGTWTNHPPRRKRKLLMHRREIDGLIGKLRDGNLTLVPLSMYFSD-GYAKVELA 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK+ +DKR +R R+ R + Sbjct: 124 LAKGKQAHDKRRDIAERTAKREVERTVGRR 153 >gi|330432429|gb|AEC17488.1| SsrA-binding protein [Gallibacterium anatis UMN179] Length = 159 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++ N++AR++Y I EAG+ L G EVKSLR K NI DSY F+N Sbjct: 1 MTKKKVTKK-DNTIALNKRARHDYFIEDEVEAGLALQGWEVKSLRAGKANIGDSYVIFQN 59 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R RKLLLSKREI L+ RDG T+V + +Y+ + Sbjct: 60 GEAFLFGANITPLNVASSHIVCDPTRTRKLLLSKREIDSLFGKSNRDGYTIVALSLYWKS 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + +A+GKK +DKR+ K+R+W K RI++ Sbjct: 120 -AWAKVKIGIAKGKKQHDKRQDIKEREWKLTKDRIMKN 156 >gi|159897968|ref|YP_001544215.1| SsrA-binding protein [Herpetosiphon aurantiacus ATCC 23779] gi|159891007|gb|ABX04087.1| SsrA-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 102/157 (64%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +V+ DNRKAR++Y I ++EAGIVL GTE+KS+R +V + SYA +N E Sbjct: 1 MAKESKDSIEVMGDNRKARHDYFIQETYEAGIVLRGTEIKSIRRGQVQLRGSYARVQNGE 60 Query: 63 IWLTNSYIPEYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 IWL +++I Y + FNH P R RKLLL +REI +L+ + G+TLVP++IY + Sbjct: 61 IWLYDAHIAPYAETGELFNHEPMRPRKLLLHRREILKLHQKLATKGLTLVPLRIYLRGR- 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LAKI+L LAQGKK YDKR++ RD RQ R ++ Sbjct: 120 LAKIELGLAQGKKLYDKRDSIADRDAKRQIERAMKNR 156 >gi|255318861|ref|ZP_05360087.1| SsrA-binding protein [Acinetobacter radioresistens SK82] gi|255304117|gb|EET83308.1| SsrA-binding protein [Acinetobacter radioresistens SK82] Length = 160 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 90/153 (58%), Gaps = 2/153 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K ++ N++AR++Y I FEAG+ L G EVKSLR ++++++SY +N E Sbjct: 7 KVVKKNNGGTIAQNKRARHDYFIEEKFEAGMSLQGWEVKSLRAGRMSLTESYILLKNGEA 66 Query: 64 WLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I P + R RKLLLSKREI +L AV + G T VP+ Y+ L Sbjct: 67 YLFGAQIQPLLSASTHIVAEATRTRKLLLSKREIEKLMGAVNQKGYTCVPLACYWKGP-L 125 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K+++AL +GK+ +DKR TEK RDW R K RI Sbjct: 126 VKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 158 >gi|256826996|ref|YP_003150955.1| SsrA-binding protein [Cryptobacterium curtum DSM 15641] gi|256583139|gb|ACU94273.1| SsrA-binding protein [Cryptobacterium curtum DSM 15641] Length = 155 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 92/149 (61%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K+++ NR AR+ Y ++ ++E GI L GTEV SLR + ++D +A E+WL N +I Sbjct: 5 EKLIARNRSARHEYEVLSTYECGIQLAGTEVCSLRENNAQLTDCFALVRRGEVWLMNLHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N N P RNRKLLL + EI L R G L+P+K+YF GL K++LA+ Sbjct: 65 APYSHGNLANRDPDRNRKLLLHRNEIRTLQEQTRERGRALIPLKMYFAKNGLVKVELAVC 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKR+ ++RD R+ R L+E + Sbjct: 125 RGKKLYDKRQDLRRRDAAREVERTLKERS 153 >gi|170699893|ref|ZP_02890923.1| SsrA-binding protein [Burkholderia ambifaria IOP40-10] gi|170135215|gb|EDT03513.1| SsrA-binding protein [Burkholderia ambifaria IOP40-10] Length = 148 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIHPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|229175791|ref|ZP_04303297.1| hypothetical protein bcere0006_48670 [Bacillus cereus MM3] gi|228607742|gb|EEK65058.1| hypothetical protein bcere0006_48670 [Bacillus cereus MM3] Length = 155 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIEKLTGASKETGYALVPVRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R R+ Sbjct: 126 GKKQYDKRNDLKEKEAKREIARAFRDR 152 >gi|217967733|ref|YP_002353239.1| SsrA-binding protein [Dictyoglomus turgidum DSM 6724] gi|217336832|gb|ACK42625.1| SsrA-binding protein [Dictyoglomus turgidum DSM 6724] Length = 153 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 76/143 (53%), Positives = 99/143 (69%), Gaps = 6/143 (4%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + KVV+ NRKAR++Y I+ +FEAGIVLTGTEVKSLR KV++ DSYA +N Sbjct: 1 MAKEK------KVVAVNRKARHDYSILETFEAGIVLTGTEVKSLRRGKVSLQDSYADVKN 54 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ N +I Y N +NH P+R RKLLL+K EI L VR G+TL+P+ IYFN + Sbjct: 55 GEVWIYNLHISPYEHGNIYNHDPKRPRKLLLNKDEIAYLVGKVRERGLTLIPLSIYFNER 114 Query: 121 GLAKIDLALAQGKKNYDKRETEK 143 G AK++L LA+GKK YDKR Sbjct: 115 GWAKVELGLAKGKKLYDKRRDIA 137 >gi|24379987|ref|NP_721942.1| SsrA-binding protein [Streptococcus mutans UA159] gi|30173275|sp|Q8DSZ5|SSRP_STRMU RecName: Full=SsrA-binding protein gi|24377974|gb|AAN59248.1|AE014992_3 putative SsrA-binding protein-like protein [Streptococcus mutans UA159] Length = 155 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 VV+ N+KAR++Y I+ ++EAGIVLTGTE+KS+R +++ + D +A +N E+WL N Sbjct: 3 KAQGNVVAQNKKARHDYEILETYEAGIVLTGTEIKSVRAARITLKDGFAQVKNGEVWLNN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ + Sbjct: 63 VHITPYEQGNIWNQDPDRTRKLLLKKREIAKLDNELKGTGMTLVPLKVYLK-NGFAKVLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GK +YDKRE+ K+R+ DR R +++ N Sbjct: 122 GLAKGKHDYDKRESIKRREQDRDIKRQMKQFN 153 >gi|313885284|ref|ZP_07819035.1| SsrA-binding protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619390|gb|EFR30828.1| SsrA-binding protein [Eremococcus coleocola ACS-139-V-Col8] Length = 154 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 100/158 (63%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS + P ++ NRKAR++Y I+ + EAGI LTGTE+KS+R K+N+ D Y +F Sbjct: 1 MSQVKKDKP----LASNRKARHDYEILETLEAGIALTGTEIKSVRQGKMNLQDGYISFYG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 + WL ++I Y Q N FNH P R+RKLLL KREI + +R+ G+T VP+K+Y + Sbjct: 57 GQAWLKAAHISPYEQGNIFNHDPVRDRKLLLHKREILKWDQELRQKGLTAVPLKVYL-VR 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + LA+GK YDKR++ K+ R R +++ Sbjct: 116 GRAKLLIGLARGKNKYDKRQSLKQDQAKRDIDRAMKDR 153 >gi|116748217|ref|YP_844904.1| SsrA-binding protein [Syntrophobacter fumaroxidans MPOB] gi|187629774|sp|A0LGB7|SSRP_SYNFM RecName: Full=SsrA-binding protein gi|116697281|gb|ABK16469.1| SsrA-binding protein [Syntrophobacter fumaroxidans MPOB] Length = 161 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 100/159 (62%), Gaps = 2/159 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K +++ N+KA ++Y I+ FEAGIVL GTEVKSLR + N+ DSYA Sbjct: 1 MTKNKPSTAEKTRLICQNKKAYHDYDILEKFEAGIVLLGTEVKSLREGRANLKDSYARVR 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L +I Y A+ NH P R RKLLL EI RL + G+ L+P+K+YF+ Sbjct: 61 KGEVFLQGLHISPYTHASYNNHEPERVRKLLLHAHEIKRLTGKTQERGLALIPLKLYFS- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG K++LALAQGKK YDKRE+ K+++ +R+ R+ + Sbjct: 120 KGKVKVELALAQGKKLYDKRESIKRKEENRELDRLRKRR 158 >gi|166711478|ref|ZP_02242685.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|289663017|ref|ZP_06484598.1| SsrA-binding protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670132|ref|ZP_06491207.1| SsrA-binding protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 167 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MSLKSRGNPPK-----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K + K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D Y Sbjct: 1 MSKKPTKDKANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR+RKLLL + EI ++ V R+G TLVP Sbjct: 61 AYVRSGEIYLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+++ K+++ALA+GK+N+DKR+ K RDW R K R++R HN Sbjct: 121 LYWSSN-KVKLEIALAKGKQNHDKRDAAKDRDWQRDKQRVMRRHN 164 >gi|171318085|ref|ZP_02907254.1| SsrA-binding protein [Burkholderia ambifaria MEX-5] gi|171096709|gb|EDT41594.1| SsrA-binding protein [Burkholderia ambifaria MEX-5] Length = 148 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHITPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|85859573|ref|YP_461775.1| SsrA-binding protein [Syntrophus aciditrophicus SB] gi|123516733|sp|Q2LU46|SSRP_SYNAS RecName: Full=SsrA-binding protein gi|85722664|gb|ABC77607.1| ssrA-binding protein [Syntrophus aciditrophicus SB] Length = 158 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 99/159 (62%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + P+K++ N+ AR NY I ++EAGIVL GTEVK+LR K N+ DSY ++ Sbjct: 1 MAKKEK---PEKIICQNKTARINYFIEDTYEAGIVLAGTEVKALRDGKGNLKDSYVAVKD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +EI+L +I Y N NH P R RKLL+ KREI RLY R G TL+P+K+YFN Sbjct: 58 EEIYLYGMHIGPYSHGNISNHEPERVRKLLMHKREIRRLYGKSREKGFTLIPLKVYFN-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ + +GKK YDKRE K ++ R R LR + Sbjct: 117 SRIKVEIGVGRGKKLYDKREDIKLKEDRRAMERGLRSRS 155 >gi|28210141|ref|NP_781085.1| SsrA-binding protein [Clostridium tetani E88] gi|39932380|sp|Q898Q7|SSRP_CLOTE RecName: Full=SsrA-binding protein gi|28202577|gb|AAO35022.1| SsrA-binding protein [Clostridium tetani E88] Length = 156 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K +++NRKAR++Y + ++EAGI L GTEVKS+R K N+ DSYA N E++L N + Sbjct: 6 SNKTLAENRKARHDYFVEEAYEAGIELVGTEVKSIREGKANLKDSYAEIRNGEVFLRNMH 65 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + Y Q N FN P R+RKLLL K +I +L A + G TL+P+ +Y G K++LA+ Sbjct: 66 VSPYEQGNIFNKDPLRDRKLLLHKMQILKLTAYTTQQGYTLIPLSLYLK-NGRVKVNLAV 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKKNYDKR+ ++ R R L++ + Sbjct: 125 AKGKKNYDKRQDLIEKAAKRDIERELKDRS 154 >gi|262395069|ref|YP_003286923.1| tmRNA-binding protein SmpB [Vibrio sp. Ex25] gi|262338663|gb|ACY52458.1| tmRNA-binding protein SmpB [Vibrio sp. Ex25] Length = 161 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY Sbjct: 1 MAKKKTKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANISESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L+ V R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRVNREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKLKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|301154814|emb|CBW14277.1| trans-translation protein [Haemophilus parainfluenzae T3T1] Length = 160 Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++AR+ Y I EAG+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKVKVGSNTIALNKRARHEYFIEDEIEAGLELQGWEVKSMRAGKANISDSYIIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ Sbjct: 63 YLFGATIQPLSLASTHVVCDPTRTRKLLLNKRELDNLFGKSSRDGFTIVALSLYWKGP-W 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AKI + LA+GKK +DKR+ K+R+W K RI++ Sbjct: 122 AKIKIGLAKGKKQHDKRDDIKEREWKVAKERIMKN 156 >gi|78066778|ref|YP_369547.1| SsrA-binding protein [Burkholderia sp. 383] gi|123568191|sp|Q39F63|SSRP_BURS3 RecName: Full=SsrA-binding protein gi|77967523|gb|ABB08903.1| SsrA-binding protein [Burkholderia sp. 383] Length = 148 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++DEI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIREGYVVIKHDEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHITPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|193212255|ref|YP_001998208.1| SsrA-binding protein [Chlorobaculum parvum NCIB 8327] gi|193085732|gb|ACF11008.1| SsrA-binding protein [Chlorobaculum parvum NCIB 8327] Length = 157 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +G P NRKAR+ Y I+ + AGI L G+EVKS+R+ K ++++SYA Sbjct: 1 MAKK-QGKPEYVTAISNRKARFEYEILDTIVAGIELLGSEVKSVRLGKASLNESYAMIHR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N I Y P+R+R+LLL K EI RL + + G+TL+P+K +FN K Sbjct: 60 GEVWLENMQITPYEHNTLDTLDPKRSRRLLLHKSEILRLQSKISEKGLTLIPLKAFFNPK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ KI+L LA+GKK YDKRET K RD +RQ ++ +++ Sbjct: 120 GILKIELGLARGKKLYDKRETVKNRDAERQLQQLKKQY 157 >gi|145638197|ref|ZP_01793807.1| SsrA-binding protein [Haemophilus influenzae PittII] gi|145272526|gb|EDK12433.1| SsrA-binding protein [Haemophilus influenzae PittII] gi|309751353|gb|ADO81337.1| SsrA-binding protein [Haemophilus influenzae R2866] Length = 161 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ + Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELTSLFGKANRDGFTIVALSLYWKS-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKR+ K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156 >gi|229543261|ref|ZP_04432321.1| SsrA-binding protein [Bacillus coagulans 36D1] gi|229327681|gb|EEN93356.1| SsrA-binding protein [Bacillus coagulans 36D1] Length = 154 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAGIVL GTE+KS+R +VN+ DS+A EN E+++ +I Sbjct: 7 KVLAQNKKASHDYFIEETYEAGIVLQGTEIKSIRAGRVNLRDSFARVENGEVFVYGMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RK+LL K+EI RL + G L+P+KIY G AK+ + LA+ Sbjct: 67 PYEQGNRYNHDPLRPRKILLHKKEIDRLAGVTKEKGYALIPLKIYIK-NGYAKVLVGLAR 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKNYDKRE+ KK++ R+ R + Sbjct: 126 GKKNYDKRESLKKKEAAREIERAFKAR 152 >gi|306835544|ref|ZP_07468558.1| SsrA-binding protein [Corynebacterium accolens ATCC 49726] gi|304568601|gb|EFM44152.1| SsrA-binding protein [Corynebacterium accolens ATCC 49726] Length = 180 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 75/150 (50%), Positives = 102/150 (68%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 ++ NR+AR++Y I+ FE GIVL GTE+KSLR K++++D++AT +N E +L N Sbjct: 26 SGDATLATNRRARHDYKILEEFECGIVLLGTEIKSLREGKISLNDAFATIDNGEAYLRNL 85 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY + NH PRR RKLLL +REI +LY VR TLVP+K+Y G AK+ LA Sbjct: 86 HIPEYSMGSWTNHSPRRTRKLLLHRREIDKLYGQVRNGNKTLVPLKVYLK-NGYAKLSLA 144 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LAQGK++YDKRE K+RD +R+ R L Sbjct: 145 LAQGKQDYDKREDIKRRDQNREITRELGRR 174 >gi|257791712|ref|YP_003182318.1| SsrA-binding protein [Eggerthella lenta DSM 2243] gi|317487818|ref|ZP_07946411.1| SsrA-binding protein [Eggerthella sp. 1_3_56FAA] gi|325830631|ref|ZP_08164052.1| SsrA-binding protein [Eggerthella sp. HGA1] gi|257475609|gb|ACV55929.1| SsrA-binding protein [Eggerthella lenta DSM 2243] gi|316913093|gb|EFV34609.1| SsrA-binding protein [Eggerthella sp. 1_3_56FAA] gi|325487377|gb|EGC89819.1| SsrA-binding protein [Eggerthella sp. HGA1] Length = 155 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 97/152 (63%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +K ++ N+KA + Y I+ + EAGI LTGTEV+SLR + ++D +A + E+WL N Sbjct: 2 KREEKTIAKNKKAFHEYEILETLEAGIELTGTEVRSLRDNHCQLTDCFALIRDGEVWLHN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +IP YL N N P R RKLLL K++I +L V+ GM LVP+K+YF L K++L Sbjct: 62 VHIPPYLNGNIANPDPDRKRKLLLHKKQIRQLQEQVKEKGMALVPVKMYFKDNSLVKVEL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+A+GKK YDKR T RD R+ R L+E + Sbjct: 122 AVARGKKLYDKRATMAARDSRREVERALKERS 153 >gi|91225105|ref|ZP_01260327.1| SsrA-binding protein [Vibrio alginolyticus 12G01] gi|269965195|ref|ZP_06179329.1| SsrA-binding protein [Vibrio alginolyticus 40B] gi|91190048|gb|EAS76319.1| SsrA-binding protein [Vibrio alginolyticus 12G01] gi|269830181|gb|EEZ84408.1| SsrA-binding protein [Vibrio alginolyticus 40B] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY Sbjct: 1 MAKKKTKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANISESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L+ V R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRVNREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKLKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|290580033|ref|YP_003484425.1| hypothetical protein SmuNN2025_0507 [Streptococcus mutans NN2025] gi|254996932|dbj|BAH87533.1| putative SsrA-binding protein homolog [Streptococcus mutans NN2025] Length = 155 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 104/152 (68%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 VV+ N+KAR++Y I+ ++EAGIVLTGTE+KS+R +++ + D +A +N E+WL N Sbjct: 3 KAQGNVVAQNKKARHDYEILETYEAGIVLTGTEIKSVRAARITLKDGFAQIKNGEVWLNN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ + Sbjct: 63 VHITPYEQGNIWNQDPDRTRKLLLKKREIAKLDNELKGTGMTLVPLKVYLK-NGFAKVLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GK +YDKRE+ K+R+ DR R +++ N Sbjct: 122 GLAKGKHDYDKRESIKRREQDRDIKRQMKQFN 153 >gi|284929621|ref|YP_003422143.1| SsrA-binding protein [cyanobacterium UCYN-A] gi|284810065|gb|ADB95762.1| SsrA-binding protein [cyanobacterium UCYN-A] Length = 155 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KV+S+NRKA + Y I+ +EAGI L GTEVKS+R KVN++D YA +N E+W Sbjct: 2 ENQDKAIKVISNNRKAFFLYEILEKYEAGIELVGTEVKSIRAGKVNLTDGYAFIKNAEVW 61 Query: 65 LTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L+N +I Y ++ FNH PRR RKLL+ ++EI++L + + G+TLVP+K+YF L Sbjct: 62 LSNVHISSYAASSLYFNHDPRRIRKLLMHRKEINQLIGKIEQKGLTLVPLKLYFKGS-LV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KI L L +GKK +DKRET K R R+ RIL+ + Sbjct: 121 KISLGLGKGKKLHDKRETIKNRQDQREISRILKNN 155 >gi|269468803|gb|EEZ80407.1| tmRNA-binding protein [uncultured SUP05 cluster bacterium] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 100/149 (67%), Gaps = 2/149 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++ N+KAR++Y I ++ EAG+ L G EVKSLR +KV+I +SY +N+E++L +++ Sbjct: 13 NTIALNKKARHDYFIEQTLEAGLSLEGWEVKSLRDNKVHIKESYVILKNNELFLFGAHVS 72 Query: 72 EYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + N P R RKLLL++ EI+R+ + + G T+VP+K+Y+ +G K+++ +A Sbjct: 73 PLKSASTHVNADPTRTRKLLLNRLEINRIKDKINQKGATVVPLKLYWT-RGKVKLEIGVA 131 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK++DKR+ K RDW R K R L+E + Sbjct: 132 KGKKSHDKRQDIKARDWQRDKQRALKESS 160 >gi|293390549|ref|ZP_06634883.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951083|gb|EFE01202.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D7S-1] Length = 160 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 87/155 (56%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I E G+ L G EVKS+R K N+SDSY F+N E Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEDEIEVGLELQGWEVKSMRAGKANLSDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL +RE+ L+ RDG TL+ + Y+ Sbjct: 63 FLFGAIIQPLSVASTHIVCDPTRTRKLLLKQRELDSLFGKANRDGFTLIALSFYWKG-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKRE K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKREDIKEREWKVAKERIMKN 156 >gi|16272919|ref|NP_439144.1| SsrA-binding protein [Haemophilus influenzae Rd KW20] gi|68249566|ref|YP_248678.1| SsrA-binding protein [Haemophilus influenzae 86-028NP] gi|145628082|ref|ZP_01783883.1| SsrA-binding protein [Haemophilus influenzae 22.1-21] gi|145630074|ref|ZP_01785856.1| SsrA-binding protein [Haemophilus influenzae R3021] gi|145632366|ref|ZP_01788101.1| SsrA-binding protein [Haemophilus influenzae 3655] gi|145637285|ref|ZP_01792946.1| SsrA-binding protein [Haemophilus influenzae PittHH] gi|148826371|ref|YP_001291124.1| SsrA-binding protein [Haemophilus influenzae PittEE] gi|229846039|ref|ZP_04466151.1| SsrA-binding protein [Haemophilus influenzae 7P49H1] gi|260580072|ref|ZP_05847902.1| SsrA-binding protein [Haemophilus influenzae RdAW] gi|260581940|ref|ZP_05849736.1| SsrA-binding protein [Haemophilus influenzae NT127] gi|319775085|ref|YP_004137573.1| SsrA-binding protein [Haemophilus influenzae F3047] gi|319897507|ref|YP_004135704.1| ssra-binding protein [Haemophilus influenzae F3031] gi|329123004|ref|ZP_08251575.1| SsrA-binding protein [Haemophilus aegyptius ATCC 11116] gi|1173461|sp|P44967|SSRP_HAEIN RecName: Full=SsrA-binding protein gi|81336005|sp|Q4QLS9|SSRP_HAEI8 RecName: Full=SsrA-binding protein gi|166223221|sp|A5UD90|SSRP_HAEIE RecName: Full=SsrA-binding protein gi|1574010|gb|AAC22643.1| small protein B (smpB) [Haemophilus influenzae Rd KW20] gi|68057765|gb|AAX88018.1| SsrA-binding protein [Haemophilus influenzae 86-028NP] gi|144979857|gb|EDJ89516.1| SsrA-binding protein [Haemophilus influenzae 22.1-21] gi|144984355|gb|EDJ91778.1| SsrA-binding protein [Haemophilus influenzae R3021] gi|144987273|gb|EDJ93803.1| SsrA-binding protein [Haemophilus influenzae 3655] gi|145269537|gb|EDK09479.1| SsrA-binding protein [Haemophilus influenzae PittHH] gi|148716531|gb|ABQ98741.1| SsrA-binding protein [Haemophilus influenzae PittEE] gi|229811043|gb|EEP46760.1| SsrA-binding protein [Haemophilus influenzae 7P49H1] gi|260093356|gb|EEW77289.1| SsrA-binding protein [Haemophilus influenzae RdAW] gi|260095133|gb|EEW79025.1| SsrA-binding protein [Haemophilus influenzae NT127] gi|309973519|gb|ADO96720.1| SsrA-binding protein [Haemophilus influenzae R2846] gi|317433013|emb|CBY81384.1| SsrA-binding protein [Haemophilus influenzae F3031] gi|317449676|emb|CBY85882.1| SsrA-binding protein [Haemophilus influenzae F3047] gi|327471935|gb|EGF17375.1| SsrA-binding protein [Haemophilus aegyptius ATCC 11116] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 62/155 (40%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ + Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKS-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKR+ K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156 >gi|239917291|ref|YP_002956849.1| SsrA-binding protein [Micrococcus luteus NCTC 2665] gi|281414230|ref|ZP_06245972.1| SsrA-binding protein [Micrococcus luteus NCTC 2665] gi|239838498|gb|ACS30295.1| SsrA-binding protein [Micrococcus luteus NCTC 2665] Length = 171 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 67/166 (40%), Positives = 106/166 (63%), Gaps = 8/166 (4%) Query: 1 MSLKSRGNPPKK-------VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53 M S+G K+ V+++N+KAR++Y I+ ++EAG+VLTGTEVKSLR K ++ D Sbjct: 1 MGKNSKGKATKQPAPGERQVIANNKKARHDYTILDTYEAGMVLTGTEVKSLREGKASLVD 60 Query: 54 SYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPM 113 +A F DE+WL YIPEYL + NH RR RKLLL + E+ ++ ++ G+T+VP+ Sbjct: 61 GFAVFYRDELWLEQVYIPEYLNGSWTNHAARRRRKLLLHRAELTKISRQIQDPGLTIVPL 120 Query: 114 KIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +YF G K+++ +A+G + YDKR +++ +R+ R +R N Sbjct: 121 SLYF-LNGRVKVEIGVARGNREYDKRHKLREQQDNREAQRAMRMRN 165 >gi|310657967|ref|YP_003935688.1| trans-translation protein [Clostridium sticklandii DSM 519] gi|308824745|emb|CBH20783.1| trans-translation protein [Clostridium sticklandii] Length = 151 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K V+ NRKAR+NY I+ ++E GI L GTEVKS+R KVN+ + YA+ +N E++L + Sbjct: 3 GSKTVATNRKARFNYEIIETYEVGIELKGTEVKSIRAGKVNLGEGYASVDNGEVFLKQVH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q N FN P R RKLLL K+EI +L + G +L+P+ +Y +G K+ LAL Sbjct: 63 ISPYEQGNIFNVDPLRVRKLLLHKQEIRKLIGETTQKGYSLIPLSMYLK-RGKVKVQLAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKKNYDKRE+ K+D R+ R +++ Sbjct: 122 AKGKKNYDKRESLAKKDAQRRMEREIKDR 150 >gi|261252211|ref|ZP_05944784.1| tmRNA-binding protein SmpB [Vibrio orientalis CIP 102891] gi|260935602|gb|EEX91591.1| tmRNA-binding protein SmpB [Vibrio orientalis CIP 102891] Length = 161 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLRQGKANIAESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|229087597|ref|ZP_04219727.1| hypothetical protein bcere0022_41610 [Bacillus cereus Rock3-44] gi|228695713|gb|EEL48568.1| hypothetical protein bcere0022_41610 [Bacillus cereus Rock3-44] Length = 155 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 97/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+K ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKVFHDYFIDETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NRFNH P R RKLLL K+EI +L + G TLVP+KIY G AK+ L Sbjct: 63 MHISPYEQGNRFNHEPLRTRKLLLHKKEIDKLIGYSKETGYTLVPVKIYLK-NGFAKMAL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKK YDKR K+++ R+ R R+ Sbjct: 122 GVARGKKQYDKRHDLKEKEAKREIARAFRDR 152 >gi|84494438|ref|ZP_00993557.1| SsrA-binding protein [Janibacter sp. HTCC2649] gi|84383931|gb|EAP99811.1| SsrA-binding protein [Janibacter sp. HTCC2649] Length = 164 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 67/154 (43%), Positives = 106/154 (68%), Gaps = 1/154 (0%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 + K + + +K+++ N+KAR++Y I +FEAG+VL GTEVK+LR+ + + D +A+F D Sbjct: 7 TAKKKEDDGRKLIASNKKARHDYLIEDTFEAGLVLMGTEVKALRMGRATLVDGWASFTGD 66 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E++L +IPEYL + NH PRR RKLLL+++E+ R+ R G T+VP+++YF G Sbjct: 67 ELFLEGVHIPEYLSGSWTNHTPRRRRKLLLNRKELDRIMHKTRESGHTIVPLQLYFKD-G 125 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 AK+++A+A+GKK YDKR ++R R+ R L Sbjct: 126 RAKVEIAIAKGKKEYDKRHALRERQDRRETEREL 159 >gi|187631671|sp|A4XYG4|SSRP_PSEMY RecName: Full=SsrA-binding protein Length = 160 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + P+ ++ N+KA ++Y + + FEAG+ L G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKH--PQGTIALNKKALHDYFVEQKFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DE WL ++I + P R RKLLL KRE+ +L+ AV++ G T V + +Y+ Sbjct: 59 DEAWLMGAHITPLKTASTHVIADPIRTRKLLLHKRELDKLFGAVQQKGYTCVALSLYWKQ 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++ALA+GKK++DKR EK+RD +R+ R +R Sbjct: 119 H-LVKCEIALAKGKKDFDKRHVEKERDANREVQRAMRSK 156 >gi|313114015|ref|ZP_07799569.1| SsrA-binding protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310623635|gb|EFQ07036.1| SsrA-binding protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 160 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 88/153 (57%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ E+ E+ + Sbjct: 5 KERPATKTIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIEDGELLV 64 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K+ Sbjct: 65 KGMHISPYDHGNMFNQDPMRVRRLLAHKSEIRRLHQQCKLQGYTLVPLSLYFK-HGRVKM 123 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++ L +GKK YDKR +RD R R ++ + Sbjct: 124 EVGLCKGKKLYDKRADAAQRDAKRSIDRAMKSN 156 >gi|262369412|ref|ZP_06062740.1| ssrA-binding protein [Acinetobacter johnsonii SH046] gi|262315480|gb|EEY96519.1| ssrA-binding protein [Acinetobacter johnsonii SH046] Length = 158 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 94/159 (59%), Gaps = 7/159 (4%) Query: 1 MSLK---SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ + ++ N++AR++Y I FEAG+ L G EVKSLR ++ +S+SY T Sbjct: 1 MAKATVVKKNTSG--TIAQNKRARHDYFIEEKFEAGLSLQGWEVKSLRAGRMTLSESYIT 58 Query: 58 FENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 F+N E +L + I P + R RKLLL++RE+ +L AV + G + VP+ Y Sbjct: 59 FKNGEAFLFGAQIQPLLSASTHIVPEATRTRKLLLNRRELDKLLGAVNQKGYSCVPLVAY 118 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 + AK+++AL +GK+ +DKR TEK RDW R K RI+ Sbjct: 119 WKGP-RAKLEIALVKGKQLHDKRATEKDRDWQRDKARIM 156 >gi|319779565|ref|YP_004130478.1| tmRNA-binding protein SmpB [Taylorella equigenitalis MCE9] gi|317109589|gb|ADU92335.1| tmRNA-binding protein SmpB [Taylorella equigenitalis MCE9] Length = 149 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 98/146 (67%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72 +++N++AR++Y I FEAG+VL G EVK++R KV + D+Y + E++L N ++ P Sbjct: 3 ITENKRARHDYFIEDKFEAGLVLEGWEVKAIRAGKVQLHDTYVIVRDGELFLLNMHVNPL 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLL+ +REI++L V + G TL+P+ +++ A G K+D LA+G Sbjct: 63 LSASTHVHPQAYRTRKLLMHRREINKLIGKVEQRGYTLIPLNLHYKA-GKIKLDFGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK++DKR+T K+RDW RQK RI++ + Sbjct: 122 KKDHDKRDTLKERDWQRQKERIMKTN 147 >gi|312899989|ref|ZP_07759307.1| SsrA-binding protein [Enterococcus faecalis TX0470] gi|311292985|gb|EFQ71541.1| SsrA-binding protein [Enterococcus faecalis TX0470] Length = 154 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ DR+ R L+ + Sbjct: 126 GKKQYDKREDLKRKEVDREISRTLKNN 152 >gi|56460006|ref|YP_155287.1| SsrA-binding protein [Idiomarina loihiensis L2TR] gi|61216426|sp|Q5QW47|SSRP_IDILO RecName: Full=SsrA-binding protein gi|56179016|gb|AAV81738.1| TmRNA-binding protein [Idiomarina loihiensis L2TR] Length = 159 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + ++ N+KAR+ Y + FEAG+ L G E+KS+R KVNISDSY +N Sbjct: 1 MSKK-KPQQSSNTIARNKKARHEYFLEDKFEAGVSLQGWEIKSIRAGKVNISDSYVIIKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I Q ++ P R+RKLLL +RE+ +L A R+G ++V IY+ Sbjct: 60 GEAYLLGAEIQPLNQASSHVYCEPDRSRKLLLKRRELDKLIGASEREGYSIVATTIYWKG 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+++ LAQGKK++DKR+T K+RDW RQK RI++ Sbjct: 120 P-WAKLEIFLAQGKKSHDKRDTIKERDWQRQKARIMKH 156 >gi|229592659|ref|YP_002874778.1| SsrA-binding protein [Pseudomonas fluorescens SBW25] gi|259511427|sp|C3K282|SSRP_PSEFS RecName: Full=SsrA-binding protein gi|229364525|emb|CAY52382.1| SsrA-binding protein [Pseudomonas fluorescens SBW25] Length = 160 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR SK+ + DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHRFEAGLVLAGWEVKSLRASKLQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL+ RE+ +L AAV++ G + + Y++ Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLNARELEKLAAAVQQKGYACICLSWYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR+TE++RD +R+ HR +R Sbjct: 119 H-LVKCEIALGKGKKEYDKRDTERERDSNRELHRAVRNK 156 >gi|298505823|gb|ADI84546.1| SsrA-binding protein [Geobacter sulfurreducens KN400] Length = 153 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA +++ I FEAG+VL GTEVKSLR K N++DS+A N EI+L N + Sbjct: 2 GEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLL+ K+EI +L+ +R G ++VP+++YF GLAK++L L Sbjct: 62 INPYTFGNRENHDPDRLRKLLMHKKEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R+ + LRE + Sbjct: 121 AKGKKLYDKREDMKKKDQSREMAQALREKS 150 >gi|254787233|ref|YP_003074662.1| SsrA-binding protein [Teredinibacter turnerae T7901] gi|259511431|sp|C5BQH7|SSRP_TERTT RecName: Full=SsrA-binding protein gi|237686304|gb|ACR13568.1| SsrA-binding protein [Teredinibacter turnerae T7901] Length = 158 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + ++ N+KAR++Y I FEAG+ L G EVK+LR K ++DSY F+N E Sbjct: 1 MAKKKTQNSNTIALNKKARHDYFIEERFEAGVSLAGWEVKALRAGKGQLTDSYVIFKNGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 WL + I Q + F P R RKLLL ++E+ +L A + G T+V +Y+ Sbjct: 61 AWLLGAQIQPLPQASTHFVTDPTRTRKLLLHRKELTKLKEATEQKGHTVVATALYWKHH- 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 L K ++A A+GK+ +DKR+TEK+RDW++QK RIL Sbjct: 120 LVKCEIATAKGKQLHDKRQTEKERDWNKQKQRIL 153 >gi|28897418|ref|NP_797023.1| SsrA-binding protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837724|ref|ZP_01990391.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810] gi|153839538|ref|ZP_01992205.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810] gi|260363516|ref|ZP_05776345.1| SsrA-binding protein [Vibrio parahaemolyticus K5030] gi|260876381|ref|ZP_05888736.1| SsrA-binding protein [Vibrio parahaemolyticus AN-5034] gi|260898652|ref|ZP_05907148.1| SsrA-binding protein [Vibrio parahaemolyticus Peru-466] gi|260899254|ref|ZP_05907649.1| SsrA-binding protein [Vibrio parahaemolyticus AQ4037] gi|31077024|sp|Q87RY2|SSRP_VIBPA RecName: Full=SsrA-binding protein gi|28805630|dbj|BAC58907.1| small protein B [Vibrio parahaemolyticus RIMD 2210633] gi|149746941|gb|EDM57929.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810] gi|149748919|gb|EDM59750.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810] gi|308086968|gb|EFO36663.1| SsrA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308093050|gb|EFO42745.1| SsrA-binding protein [Vibrio parahaemolyticus AN-5034] gi|308106596|gb|EFO44136.1| SsrA-binding protein [Vibrio parahaemolyticus AQ4037] gi|308113001|gb|EFO50541.1| SsrA-binding protein [Vibrio parahaemolyticus K5030] gi|328472569|gb|EGF43432.1| SsrA-binding protein [Vibrio parahaemolyticus 10329] Length = 161 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|288554068|ref|YP_003426003.1| SsrA-binding protein [Bacillus pseudofirmus OF4] gi|288545228|gb|ADC49111.1| SsrA-binding protein [Bacillus pseudofirmus OF4] Length = 155 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 108/147 (73%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y I ++EAG+VL GTE+KS+R ++N+ DS+A +N E++L N++I Sbjct: 7 KVIAQNKKARHDYFIEETYEAGMVLQGTEIKSMRAGRMNLKDSFARIKNGEVYLHNAHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY Q NR+NH P R RKLLL K++I++L ++ G +LVP+K+Y G AKI + LA+ Sbjct: 67 EYEQGNRYNHEPERARKLLLHKKQINQLIGLTKQQGYSLVPLKVYIK-NGYAKILIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKN+DKRET K++D R+ R L++ Sbjct: 126 GKKNFDKRETLKRKDAKREVERALKDR 152 >gi|194015454|ref|ZP_03054070.1| SsrA-binding protein [Bacillus pumilus ATCC 7061] gi|194012858|gb|EDW22424.1| SsrA-binding protein [Bacillus pumilus ATCC 7061] Length = 156 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVVS N+KA ++Y I ++EAG+VL GTE+KS+R KVN+ DS+A E E++L N ++ Sbjct: 7 KVVSQNKKANHDYFIEETYEAGLVLQGTEIKSIRAGKVNLKDSFAKIERGEVFLHNMHVS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +++I +L A + +G +LVP+K+Y G AK+ + + + Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKQISKLIGATKEEGYSLVPLKLYLK-NGFAKVLIGIGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE KK+D R+ R R+ Sbjct: 126 GKKKYDKREDLKKKDAKREIDRAFRDR 152 >gi|16080413|ref|NP_391240.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221311310|ref|ZP_03593157.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|221315637|ref|ZP_03597442.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320553|ref|ZP_03601847.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221324837|ref|ZP_03606131.1| SsrA-binding protein [Bacillus subtilis subsp. subtilis str. SMY] gi|296330420|ref|ZP_06872900.1| SsrA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675966|ref|YP_003867638.1| tmRNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|321312910|ref|YP_004205197.1| SsrA-binding protein [Bacillus subtilis BSn5] gi|3334327|sp|O32230|SSRP_BACSU RecName: Full=SsrA-binding protein gi|2635873|emb|CAB15365.1| tmRNA-binding protein [Bacillus subtilis subsp. subtilis str. 168] gi|291485892|dbj|BAI86967.1| SsrA-binding protein [Bacillus subtilis subsp. natto BEST195] gi|296152423|gb|EFG93292.1| SsrA-binding protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414210|gb|ADM39329.1| tmRNA-binding protein [Bacillus subtilis subsp. spizizenii str. W23] gi|320019184|gb|ADV94170.1| SsrA-binding protein [Bacillus subtilis BSn5] Length = 156 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV+S N+KA ++Y I ++E GIVL GTE+KS+R +VN+ DS+A E E++L N Sbjct: 3 KGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDSFAKIERGEVFLHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 ++ Y Q NR+NH P R RKLL+ ++EI++L + G +LVP+K+Y G AK+ L Sbjct: 63 MHVSPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLK-NGFAKVLL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L +GKKNYDKRE K++D R+ R R+ Sbjct: 122 GLGKGKKNYDKREDLKRKDAKREIERAFRD 151 >gi|253996335|ref|YP_003048399.1| SsrA-binding protein [Methylotenera mobilis JLW8] gi|253983014|gb|ACT47872.1| SsrA-binding protein [Methylotenera mobilis JLW8] Length = 149 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 2/147 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I +EAGIVL G EVK++R +++NI ++Y + E++L ++ Sbjct: 3 IAQNKKAFFDYFIEDKYEAGIVLEGWEVKAIRENRINIKEAYVIIQRGEVYLIGCHVTPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL EI RL V R G TLVP+ ++F+ KG K+ + LA+G Sbjct: 63 GAASTHIRPDAIRTRKLLLHNEEISRLIGKVERSGYTLVPLDMHFS-KGRVKVQIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK +DKR+TEK +DW+R+K RI+R HN Sbjct: 122 KKQHDKRDTEKAKDWEREKGRIMRAHN 148 >gi|323340209|ref|ZP_08080473.1| SsrA-binding protein [Lactobacillus ruminis ATCC 25644] gi|323092400|gb|EFZ35008.1| SsrA-binding protein [Lactobacillus ruminis ATCC 25644] Length = 156 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + ++ ++ N+KAR++Y+I+ + EAGIVLTGTE+KS+R +V + D +A +NDE Sbjct: 1 MAGKNSEKQRPLAQNKKARHDYNILETVEAGIVLTGTEIKSVREGRVTLKDGFAQIKNDE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N +I EY NRFNH P R RKLLL K++I +L G+TLVP+K+Y G Sbjct: 61 AWLENVHISEYTAGNRFNHDPLRRRKLLLHKKQIVQLGQKTSAKGVTLVPLKVYLK-NGF 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + +A GK YDKRET K+RD +R+ R L+ Sbjct: 120 AKVLIGVATGKHEYDKRETIKRRDQEREIQRTLKNF 155 >gi|90962130|ref|YP_536046.1| SsrA-binding protein [Lactobacillus salivarius UCC118] gi|227891153|ref|ZP_04008958.1| SsrA-binding protein [Lactobacillus salivarius ATCC 11741] gi|122448779|sp|Q1WSY8|SSRP_LACS1 RecName: Full=SsrA-binding protein gi|90821324|gb|ABD99963.1| SsrA-binding protein [Lactobacillus salivarius UCC118] gi|227867027|gb|EEJ74448.1| SsrA-binding protein [Lactobacillus salivarius ATCC 11741] Length = 155 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 107/154 (69%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ P ++ NRKAR++Y+I+ ++EAGI LTGTE+KS+R S++N+ D +A +N E+W Sbjct: 2 AKSKPKDNALAQNRKARHDYNILETYEAGIALTGTEIKSVRASRINLKDGFAQVKNGEVW 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y Q N FNH P RNRKLLL K+EI L ++ G+T+VP+K+Y G AK Sbjct: 62 LMNVHISLYDQGNIFNHDPLRNRKLLLHKKEIKHLSEETQKKGITIVPLKVYIK-NGFAK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + + +AQGK YDKRET K+RD +R+ R L+ + Sbjct: 121 VLIGIAQGKHVYDKRETIKRRDQEREIRRTLKNY 154 >gi|297200067|ref|ZP_06917464.1| SsrA-binding protein [Streptomyces sviceus ATCC 29083] gi|197710540|gb|EDY54574.1| SsrA-binding protein [Streptomyces sviceus ATCC 29083] Length = 180 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K+V+ N+KAR++Y I+ ++EAGIVLTGTEVKSLR + +++D + + E WL N++I Sbjct: 27 RKLVAQNKKARHDYAIIDTYEAGIVLTGTEVKSLRQGRTSLADGFVQIDGGEAWLHNAHI 86 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PEY Q + NH RR RKLLL + EI +L + G T+VP+ +YF G AK ++ALA Sbjct: 87 PEYSQGSWTNHSARRKRKLLLHREEIDKLETKAQETGHTIVPLALYFT-NGRAKAEIALA 145 Query: 131 QGKKNYDKRETEKKRDWDRQKHRIL 155 +GKK YDKR+T +++ R+ R + Sbjct: 146 RGKKEYDKRQTLREKQDRRESDRAI 170 >gi|301301260|ref|ZP_07207415.1| SsrA-binding protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851136|gb|EFK78865.1| SsrA-binding protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 155 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 107/154 (69%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ P ++ NRKAR++Y+I+ ++EAGI LTGTE+KS+R S++N+ D +A +N E+W Sbjct: 2 AKSKPKDNALAQNRKARHDYNILETYEAGIALTGTEIKSVRASRINLKDGFAQVKNGEVW 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y Q N FNH P RNRKLLL K+EI L ++ G+T+VP+K+Y G AK Sbjct: 62 LINVHISLYDQGNIFNHDPLRNRKLLLHKKEIKHLSEETQKKGITIVPLKVYIK-NGFAK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + + +AQGK YDKRET K+RD +R+ R L+ + Sbjct: 121 VLIGIAQGKHVYDKRETIKRRDQEREIRRTLKNY 154 >gi|312963105|ref|ZP_07777590.1| SsrA-binding protein [Pseudomonas fluorescens WH6] gi|311282616|gb|EFQ61212.1| SsrA-binding protein [Pseudomonas fluorescens WH6] Length = 160 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR SK+ + DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHRFEAGLVLAGWEVKSLRASKLQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL+ RE+ +L AAV++ G + + Y++ Sbjct: 59 GEAWLLGSHITPLTTASTHVIADPVRTRKLLLNARELEKLAAAVQQKGYACICLSWYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR+TE++RD +R+ HR +R Sbjct: 119 H-LVKCEIALGKGKKEYDKRDTERERDSNRELHRAVRNK 156 >gi|254178352|ref|ZP_04885007.1| SsrA-binding protein [Burkholderia mallei ATCC 10399] gi|160699391|gb|EDP89361.1| SsrA-binding protein [Burkholderia mallei ATCC 10399] Length = 148 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++ EI+L ++I Sbjct: 3 IIDNRKAFFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKHAEIFLIGTHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL + EI +L V + G TLVP+ ++ G K ++ LA+G Sbjct: 63 PKASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|311896288|dbj|BAJ28696.1| putative SsrA-binding protein [Kitasatospora setae KM-6054] Length = 160 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 98/150 (65%), Gaps = 5/150 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KK+V+ N+KAR+ Y I+ ++E G+VLTGTEVKSLR + N+ D YA + Sbjct: 1 MAK----ETGKKLVAQNKKARHEYTILDTYECGMVLTGTEVKSLREGRANLVDGYAYVQG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E W+ N +IPEY Q NH RR RKLLL K EI ++ + V+ G TLVP+ +YF Sbjct: 57 GEAWIDNVFIPEYAQGTWTNHSARRKRKLLLHKMEIRKIESKVKETGHTLVPLSLYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQ 150 G AK++LALA GKK YDKR+T ++R R+ Sbjct: 116 GRAKLELALAVGKKLYDKRQTLRERQDRRE 145 >gi|257438394|ref|ZP_05614149.1| SsrA-binding protein [Faecalibacterium prausnitzii A2-165] gi|257199225|gb|EEU97509.1| SsrA-binding protein [Faecalibacterium prausnitzii A2-165] Length = 160 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 88/153 (57%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ E+ E+ + Sbjct: 5 KERPATKTIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIEDGELLV 64 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K+ Sbjct: 65 KGMHITPYDHGNIFNQDPMRVRRLLAHKNEIRRLHQQCKLQGYTLVPLSLYFK-HGRVKM 123 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +L L +GKK YDKR KRD R R ++ + Sbjct: 124 ELGLCKGKKLYDKRADAAKRDAKRSIDRAVKSN 156 >gi|154687490|ref|YP_001422651.1| SsrA-binding protein [Bacillus amyloliquefaciens FZB42] gi|308175106|ref|YP_003921811.1| tmRNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|166222358|sp|A7Z8U4|SSRP_BACA2 RecName: Full=SsrA-binding protein gi|154353341|gb|ABS75420.1| SmpB [Bacillus amyloliquefaciens FZB42] gi|307607970|emb|CBI44341.1| tmRNA-binding protein [Bacillus amyloliquefaciens DSM 7] gi|328555074|gb|AEB25566.1| SsrA-binding protein [Bacillus amyloliquefaciens TA208] gi|328913430|gb|AEB65026.1| SsrA-binding protein [Bacillus amyloliquefaciens LL3] Length = 156 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV+S N+KA ++Y I ++E GIVL GTE+KS+R +VN+ DS+A E E++L N Sbjct: 3 KGSGKVLSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNMKDSFAKIERGEVFLHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NR+NH P R RKLL+ ++EI++L + G +LVP+K+Y G AK+ + Sbjct: 63 MHISPYEQGNRYNHDPLRTRKLLMHRKEINKLIGLTKEKGYSLVPLKLYLK-NGFAKVLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +GKK YDKRE K++D R+ R R+ Sbjct: 122 GLGKGKKTYDKREDLKRKDAKREIERAFRDR 152 >gi|296169220|ref|ZP_06850873.1| SsrA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896118|gb|EFG75785.1| SsrA-binding protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 169 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 + + G K +V+ NRKAR+NY I+ FEAG+ L GTEVKSLR +++D++AT ++ Sbjct: 8 AKGAGGKRGSKQIVATNRKARHNYSILEEFEAGVALQGTEVKSLRAGHASLTDAFATVDD 67 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N YIPEY + NH PRRNRKLLL +++I RL +R + LVPM +YF+ Sbjct: 68 GEVWLRNLYIPEYRHGSWTNHEPRRNRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE- 126 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GK+ +DKR+ +RD R+ R L Sbjct: 127 GKVKVELALARGKRAHDKRQDMARRDAQREVVRELGRR 164 >gi|330958072|gb|EGH58332.1| SsrA-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 160 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +I + P R RKLLL++RE+ +L ++V++ G V + +Y+ Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTSSVQQKGYACVALSLYWKQ 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156 >gi|218887960|ref|YP_002437281.1| SsrA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758914|gb|ACL09813.1| SsrA-binding protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 153 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K P +++ N+KAR+ Y + EAG+VLTG+EVKSLR VN DSY F N Sbjct: 1 MSKK----PSPALIAQNKKARHLYELDDFMEAGLVLTGSEVKSLRAGHVNFRDSYVDFRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L +I Y A H P R+RKLLL ++I+ L V + G+T+VP+ ++F+ K Sbjct: 57 GEAFLVGLHIAPYDNAGYAQHDPDRDRKLLLHAKQINTLALRVAQKGLTVVPVNLHFS-K 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++A+ +GKK +D+RE KKR DR R L Sbjct: 116 GRVKVEIAVGRGKKLHDQREDLKKRAADRDTERELARF 153 >gi|218779791|ref|YP_002431109.1| SsrA-binding protein [Desulfatibacillum alkenivorans AK-01] gi|218761175|gb|ACL03641.1| SsrA-binding protein [Desulfatibacillum alkenivorans AK-01] Length = 159 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 77/154 (50%), Positives = 104/154 (67%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ K+V NRKAR++YHI FEAG+VLTGTEVKSLR + N+ DSYA +N E+W Sbjct: 2 SKRPEHTKLVCQNRKARHDYHIDDRFEAGMVLTGTEVKSLREGRANLKDSYARVKNGELW 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L +I EY A NH P R RKLL+ K+EI RL + G +L+P+++YF+ +G AK Sbjct: 62 LHQFHISEYPFAYYNNHEPLRIRKLLMHKQEIKRLTGKINERGFSLIPLEVYFS-RGKAK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + LALA+GKK YDKR+ KKR+ R+ RI ++ Sbjct: 121 VTLALARGKKAYDKRQDIKKRESKREMDRIKKDK 154 >gi|310828486|ref|YP_003960843.1| SsrA-binding protein [Eubacterium limosum KIST612] gi|308740220|gb|ADO37880.1| SsrA-binding protein [Eubacterium limosum KIST612] Length = 152 Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KAR++Y I ++E GIVL GTEVKSLR K ++ +S+A ++ E+++ I Sbjct: 6 KVIAKNKKARHDYFIEETYECGIVLAGTEVKSLRQGKASLKESHADIKDGEVYVYQMNIT 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N +N P R RKLLL K++I +L +R+G TLVP+ +YF G K++LALA+ Sbjct: 66 PYEHGNIYNKDPLRPRKLLLHKQQIRKLIGLKQREGYTLVPLSLYFK-NGRVKLELALAK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK YDKR T +RD +R+ + LR Sbjct: 125 GKKLYDKRHTIAERDANRRIQKNLRH 150 >gi|297538332|ref|YP_003674101.1| SsrA-binding protein [Methylotenera sp. 301] gi|297257679|gb|ADI29524.1| SsrA-binding protein [Methylotenera sp. 301] Length = 149 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 2/147 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I +EAG+VL G EVK++R ++VNI ++Y + EI++ ++ Sbjct: 3 IAQNKKAFFDYFIEDKYEAGVVLEGWEVKAIRENRVNIKEAYVIIQRGEIYIIGCHVTPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL EI +L A V R G T+VP+ ++F+ KG K+ + LA+G Sbjct: 63 GAASTHIRPDAIRTRKLLLHSEEILKLIAKVERAGYTIVPLDMHFS-KGRVKVQIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK +DKR+TEK+RDW+R+K RI+R HN Sbjct: 122 KKQHDKRDTEKERDWEREKGRIMRAHN 148 >gi|166032818|ref|ZP_02235647.1| hypothetical protein DORFOR_02534 [Dorea formicigenerans ATCC 27755] gi|166027175|gb|EDR45932.1| hypothetical protein DORFOR_02534 [Dorea formicigenerans ATCC 27755] Length = 155 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ ++EAGIVL GTEVKSLR+ K +I +S+ EN E+++ Sbjct: 3 KTNGKMIANNKKAYHDYFILDTYEAGIVLHGTEVKSLRMGKCSIKESFIRIENGEVFIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R +KL+L K EI++L + GM +VP+K+YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRVKKLMLHKTEINKLIGKTKEKGMAIVPLKVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR+ K+D R+ R + N Sbjct: 122 GLAKGKKLYDKRQDIAKKDQQREASRDFKIRN 153 >gi|157693782|ref|YP_001488244.1| SsrA-binding protein [Bacillus pumilus SAFR-032] gi|166979667|sp|A8FHG7|SSRP_BACP2 RecName: Full=SsrA-binding protein gi|157682540|gb|ABV63684.1| tmRNA-binding protein [Bacillus pumilus SAFR-032] Length = 156 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVVS N+KA ++Y I ++EAG+VL GTE+KS+R KVN+ DS+A E E++L N ++ Sbjct: 7 KVVSQNKKANHDYFIEETYEAGLVLQGTEIKSIRAGKVNLKDSFAKIERGEVFLHNMHVS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +++I +L A + +G +LVP+K+Y G AK+ + + + Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKQISKLIGATKEEGYSLVPLKLYLK-NGFAKVLIGIGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE KK+D R+ R R+ Sbjct: 126 GKKKYDKREDLKKKDAKREIERAFRDR 152 >gi|297618002|ref|YP_003703161.1| SsrA-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297145839|gb|ADI02596.1| SsrA-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 152 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 78/152 (51%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KVV +NRKAR+NYHI ++EAG+ L GTEVKSLR K NI D+YA ++ E+W+ Sbjct: 2 SKEGYKVVIENRKARHNYHIEETYEAGLCLVGTEVKSLREGKGNIQDAYAEVKDGEVWVN 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + NRFNH P+R +KLLL +REI+RLY V++ G TLVP++IYF G AK+ Sbjct: 62 NFHISPYEKGNRFNHEPKRPKKLLLHRREINRLYGLVQKKGYTLVPLRIYFKD-GKAKMA 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+A+GKK +DKRE RD R+ R ++ Sbjct: 121 LAVARGKKMHDKREDMVARDVKREIERAMKAK 152 >gi|329113443|ref|ZP_08242224.1| SsrA-binding protein [Acetobacter pomorum DM001] gi|326697268|gb|EGE48928.1| SsrA-binding protein [Acetobacter pomorum DM001] Length = 168 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 96/145 (66%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NRKAR+NY+I+ + EAG+VL G EVKSLR+ + I++++A + +WL NSYIPEY Sbjct: 19 VAQNRKARFNYNILETIEAGLVLRGAEVKSLRLGRATINEAFAGERDGSLWLFNSYIPEY 78 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 R RKLL+ ++E+ + A+ + G TLVP+ ++FN +GLAK+ L L GK Sbjct: 79 QGGVLSRFDTRAPRKLLMHRKEMRKFIGAIAKQGATLVPLNVHFNERGLAKVTLGLGVGK 138 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 K +DKR++ RDW R K R++R Sbjct: 139 KTHDKRQSIADRDWQRDKARLIRNK 163 >gi|116494483|ref|YP_806217.1| SsrA-binding protein [Lactobacillus casei ATCC 334] gi|191637917|ref|YP_001987083.1| SsrA-binding protein [Lactobacillus casei BL23] gi|227535549|ref|ZP_03965598.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|301065993|ref|YP_003788016.1| tmRNA-binding protein [Lactobacillus casei str. Zhang] gi|122264091|sp|Q03AJ7|SSRP_LACC3 RecName: Full=SsrA-binding protein gi|238693027|sp|B3WCX4|SSRP_LACCB RecName: Full=SsrA-binding protein gi|116104633|gb|ABJ69775.1| SsrA-binding protein [Lactobacillus casei ATCC 334] gi|145309095|gb|ABP57771.1| SsrA RNA binding protein [Lactobacillus casei BL23] gi|190712219|emb|CAQ66225.1| SsrA-binding protein [Lactobacillus casei BL23] gi|227186796|gb|EEI66863.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|300438400|gb|ADK18166.1| tmRNA-binding protein [Lactobacillus casei str. Zhang] gi|327381985|gb|AEA53461.1| SsrA-binding protein [Lactobacillus casei LC2W] gi|327385144|gb|AEA56618.1| SsrA-binding protein [Lactobacillus casei BD-II] Length = 157 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL N +I Y + N FN P RNRKLLL KREI +L R G+TLVP+++Y Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKREIRKLGQMTARQGVTLVPLRMYLK-H 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GK NYDKRET K++D +R+ R L+ Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 156 >gi|258542279|ref|YP_003187712.1| SsrA-binding protein [Acetobacter pasteurianus IFO 3283-01] gi|256633357|dbj|BAH99332.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-01] gi|256636416|dbj|BAI02385.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-03] gi|256639469|dbj|BAI05431.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-07] gi|256642525|dbj|BAI08480.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-22] gi|256645580|dbj|BAI11528.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-26] gi|256648633|dbj|BAI14574.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-32] gi|256651686|dbj|BAI17620.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654677|dbj|BAI20604.1| trans-translation helper factor SmpB [Acetobacter pasteurianus IFO 3283-12] Length = 168 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 97/145 (66%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NRKAR+NY+I+ + EAG+VL G EVKSLR+ + I++++A + +WL NSYIPEY Sbjct: 19 VAQNRKARFNYNILETIEAGLVLKGAEVKSLRLGRATINEAFAGERDGALWLFNSYIPEY 78 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 R RKLL+ ++E+ + A+ + G TLVP+ ++FN +GLAK+ L L GK Sbjct: 79 QGGVLSRFDTRAPRKLLMHRKEMRKFIGAIAKQGATLVPLNVHFNDRGLAKVTLGLGVGK 138 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 K++DKR++ RDW R K R++R Sbjct: 139 KSHDKRQSIADRDWQRDKARLIRNK 163 >gi|239941651|ref|ZP_04693588.1| SsrA-binding protein [Streptomyces roseosporus NRRL 15998] Length = 152 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 58/137 (42%), Positives = 94/137 (68%), Gaps = 1/137 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KAR++Y I+ ++E G+VL GTEVKSLR+ + ++ D + ++ E WL N ++PEY Sbjct: 2 IAQNKKARHDYTILDTYECGLVLMGTEVKSLRMGRASLVDGFVQIDDHEAWLHNIHVPEY 61 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 +Q NH +R RKLLL + EI +L + + G T+VP+ +YF G K+++ALA+GK Sbjct: 62 VQGTWTNHAAKRKRKLLLHRAEIDKLESKSQETGHTIVPLALYFKD-GRVKVEIALAKGK 120 Query: 134 KNYDKRETEKKRDWDRQ 150 K YDKR+T +++ R+ Sbjct: 121 KEYDKRQTLREKQDTRE 137 >gi|238021690|ref|ZP_04602116.1| hypothetical protein GCWU000324_01593 [Kingella oralis ATCC 51147] gi|237866304|gb|EEP67346.1| hypothetical protein GCWU000324_01593 [Kingella oralis ATCC 51147] Length = 148 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKA ++Y I EAG+VL G EVK++R +V + +SY ++ D +L +I Sbjct: 3 IANNRKAFHDYFIEEQIEAGLVLEGWEVKAIRAGRVQLKESYIYWKRDAFYLVGCHITPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL++REI++L R G T+VP+ ++F +G K ++ LA+G Sbjct: 63 PTASTHVKPDPVRPRKLLLNQREINKLIGKTERAGYTIVPLNLHF-LRGRIKAEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRE+ K+ DW R+K R++++ Sbjct: 122 KKLHDKRESSKEADWKREKQRLMKQ 146 >gi|224369005|ref|YP_002603169.1| SmpB [Desulfobacterium autotrophicum HRM2] gi|223691722|gb|ACN15005.1| SmpB [Desulfobacterium autotrophicum HRM2] Length = 154 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + K+++ N+KAR++YH+ EAGIVLTGTEVKS+R +V I D+YA +N E++L Sbjct: 2 TSEHIKIIATNKKARHDYHLSDEVEAGIVLTGTEVKSIRDGRVTIKDAYAEIKNGEVFLR 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y A NH P R+RKLLL EI R+ + G T++P+K+YF G K+ Sbjct: 62 QLHINPYAFAYYDNHDPLRSRKLLLHNYEIKRMIIKTKERGYTIIPLKLYFK-NGKVKVQ 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +ALA+GKK YDKRE+ K+R+ +R+ R+ +++ Sbjct: 121 IALAKGKKLYDKRESIKEREVNRELDRVKKKY 152 >gi|210618047|ref|ZP_03291882.1| hypothetical protein CLONEX_04115 [Clostridium nexile DSM 1787] gi|210149040|gb|EEA80049.1| hypothetical protein CLONEX_04115 [Clostridium nexile DSM 1787] Length = 155 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +++ EN+E+++ Sbjct: 3 KEQGKLIANNKKAYHDYFILDTYEAGISLHGTEVKSLRMGKCSIKEAFIRIENEEVFVYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL + EI+++ ++ GM LVP+K+YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHRSEINKITGKIKEKGMALVPLKVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR K+D R+ R + N Sbjct: 122 GLAKGKKLYDKRNDIAKKDQQREAQRDFKIRN 153 >gi|167772012|ref|ZP_02444065.1| hypothetical protein ANACOL_03386 [Anaerotruncus colihominis DSM 17241] gi|167665810|gb|EDS09940.1| hypothetical protein ANACOL_03386 [Anaerotruncus colihominis DSM 17241] Length = 155 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K +S N+KAR++Y + SFEAGI L GTEVKSLR + N+ DS+ E+++ +I Sbjct: 7 KTISVNKKARHDYFVEESFEAGIELFGTEVKSLRKNACNLKDSWCDITGGELFIKQMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FN P R R+LL+ +REI++L + + G TL+P+ +YF K+ L L + Sbjct: 67 PYEQGNIFNKDPYRPRRLLMHRREINKLMGLIAQQGYTLIPLSLYFKGS-RVKVQLGLCK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR+ +R R R LR+ Sbjct: 126 GKKLYDKRDDMARRAAQRDIDRALRDR 152 >gi|212640317|ref|YP_002316837.1| SsrA-binding protein [Anoxybacillus flavithermus WK1] gi|226734243|sp|B7GLX3|SSRP_ANOFW RecName: Full=SsrA-binding protein gi|212561797|gb|ACJ34852.1| tmRNA-binding protein [Anoxybacillus flavithermus WK1] Length = 154 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I ++EAG+VL GTE+KS+R KVN+ DS+A E E++L N +I Sbjct: 7 KLIAQNKKAHHDYFIEETYEAGLVLQGTEIKSIRAGKVNLKDSFAKVEKGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI +L + G TLVP+K+Y G AK+ L + + Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREISKLIGYTKEQGYTLVPLKLYIK-NGFAKLLLGVGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE KK++ R+ R RE Sbjct: 126 GKKKYDKREDMKKKEAQREVERAFRER 152 >gi|253580865|ref|ZP_04858128.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847935|gb|EES75902.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 160 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 102/159 (64%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K++++N+KA ++Y I ++EAGI L GTEVKSLR+ K +I +S+ EN Sbjct: 5 MAKKK----GMKLIANNKKAFHDYFIEDTYEAGIALAGTEVKSLRMGKCSIKESFIRVEN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLLL + EI+++ A ++ G+TLVP+K+YF Sbjct: 61 GEVYIYGMHISPYEKGNIFNKDPLRIRKLLLHRYEINKIEAKLKEKGLTLVPLKVYFKDS 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ +A+GKK YDKR+ K+D R+ R + N Sbjct: 121 -LVKVEIGMARGKKLYDKRQDIAKKDQRREAEREFKVKN 158 >gi|291557152|emb|CBL34269.1| SsrA-binding protein [Eubacterium siraeum V10Sc8a] Length = 154 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K ++DNRKAR++Y I+ S+EAGI LTGTEVKS+R +N+ DS+ + ++ E+++ Sbjct: 3 KTALKTIADNRKARHDYFILESYEAGIELTGTEVKSIRDGGLNLKDSWISIDDGELFIKQ 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLL+ KREI +L V++DG+TL+P+ +YF K+ + Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLMHKREIMKLLGQVKQDGLTLIPISVYFKGS-RVKVQV 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L +GKK +DKR+ +RD R R L+ N Sbjct: 122 GLCKGKKQHDKRDAMAQRDAKRTIDRELKMRN 153 >gi|39996809|ref|NP_952760.1| SsrA-binding protein [Geobacter sulfurreducens PCA] gi|61216577|sp|Q74CG4|SSRP_GEOSL RecName: Full=SsrA-binding protein gi|39983697|gb|AAR35087.1| SsrA-binding protein [Geobacter sulfurreducens PCA] Length = 153 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 73/150 (48%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA +++ I FEAG+VL GTEVKSLR K N++DS+A N EI+L N + Sbjct: 2 GEKLICNNKKAFHDFFIEERFEAGMVLKGTEVKSLRDGKANLNDSFALIRNGEIFLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLL+ K+EI +L+ +R G ++VP+++YF GLAK++L L Sbjct: 62 INPYAFGNRENHDPDRLRKLLMHKKEIEKLFGKIREKGYSVVPLRLYFK-NGLAKVELGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R+ + LRE + Sbjct: 121 AKGKKLYDKREDMKKKDQSREMAQALREKS 150 >gi|288958237|ref|YP_003448578.1| SsrA-binding protein [Azospirillum sp. B510] gi|288910545|dbj|BAI72034.1| SsrA-binding protein [Azospirillum sp. B510] Length = 157 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 73/149 (48%), Positives = 112/149 (75%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK + NR+AR+++ I EAGI+LTG+EVKSLR + +++++YA + E++L N+YI Sbjct: 8 KKYAAQNRRARFDFFIDDVLEAGIMLTGSEVKSLRGGRASVNEAYAGLKGGELFLFNAYI 67 Query: 71 PEYLQANRFNHY-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 PEYLQA R + + P+R RKLL+ +RE+ +L A +++ G+TLVPM +YFN +G AK+++ L Sbjct: 68 PEYLQAGRVDQHEPKRPRKLLVRRRELDKLAAGIKQKGVTLVPMSVYFNDRGYAKVEIGL 127 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A GKK +DKRE+EK+R W R K R++R+ Sbjct: 128 ATGKKKHDKRESEKERSWQRDKARLMRDK 156 >gi|255323772|ref|ZP_05364898.1| SsrA-binding protein [Corynebacterium tuberculostearicum SK141] gi|311739765|ref|ZP_07713599.1| SsrA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255298952|gb|EET78243.1| SsrA-binding protein [Corynebacterium tuberculostearicum SK141] gi|311304838|gb|EFQ80907.1| SsrA-binding protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 167 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 74/150 (49%), Positives = 104/150 (69%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 + ++ NR+AR++Y I+ +E GIVL GTE+KSLR K++++D++AT ++ E++L N Sbjct: 13 SGEATLATNRRARHDYKILEEYECGIVLLGTEIKSLREGKISLNDAFATIDDGEVYLRNL 72 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY + NH PRR RKLLL +REI +LY VR TLVP+K+Y G AK+ LA Sbjct: 73 HIPEYSMGSWTNHSPRRTRKLLLHRREIDKLYGQVRNGNKTLVPLKVYLK-NGYAKLSLA 131 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LAQGK++YDKRE K+RD DR+ R L Sbjct: 132 LAQGKQDYDKREDIKRRDQDREISRELGRR 161 >gi|29377101|ref|NP_816255.1| SsrA-binding protein [Enterococcus faecalis V583] gi|227519699|ref|ZP_03949748.1| SsrA-binding protein [Enterococcus faecalis TX0104] gi|227554111|ref|ZP_03984158.1| SsrA-binding protein [Enterococcus faecalis HH22] gi|229545016|ref|ZP_04433741.1| SsrA-binding protein [Enterococcus faecalis TX1322] gi|229549260|ref|ZP_04437985.1| SsrA-binding protein [Enterococcus faecalis ATCC 29200] gi|255971973|ref|ZP_05422559.1| SsrA-binding protein [Enterococcus faecalis T1] gi|255975030|ref|ZP_05425616.1| SsrA-binding protein [Enterococcus faecalis T2] gi|256616872|ref|ZP_05473718.1| SsrA-binding protein [Enterococcus faecalis ATCC 4200] gi|256763253|ref|ZP_05503833.1| SsrA-binding protein [Enterococcus faecalis T3] gi|256853926|ref|ZP_05559291.1| SsrA-binding protein [Enterococcus faecalis T8] gi|256957854|ref|ZP_05562025.1| SsrA-binding protein [Enterococcus faecalis DS5] gi|256963734|ref|ZP_05567905.1| SsrA-binding protein [Enterococcus faecalis HIP11704] gi|257079792|ref|ZP_05574153.1| SsrA-binding protein [Enterococcus faecalis JH1] gi|257081862|ref|ZP_05576223.1| SsrA-binding protein [Enterococcus faecalis E1Sol] gi|257084404|ref|ZP_05578765.1| SsrA-binding protein [Enterococcus faecalis Fly1] gi|257087597|ref|ZP_05581958.1| SsrA-binding protein [Enterococcus faecalis D6] gi|257090756|ref|ZP_05585117.1| SsrA-binding protein [Enterococcus faecalis CH188] gi|257416804|ref|ZP_05593798.1| SsrA-binding protein [Enterococcus faecalis AR01/DG] gi|257420020|ref|ZP_05597014.1| SsrA-binding protein [Enterococcus faecalis T11] gi|257421801|ref|ZP_05598791.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294781385|ref|ZP_06746727.1| SsrA-binding protein [Enterococcus faecalis PC1.1] gi|300860846|ref|ZP_07106933.1| SsrA-binding protein [Enterococcus faecalis TUSoD Ef11] gi|307270669|ref|ZP_07551960.1| SsrA-binding protein [Enterococcus faecalis TX4248] gi|307271681|ref|ZP_07552952.1| SsrA-binding protein [Enterococcus faecalis TX0855] gi|307276863|ref|ZP_07557974.1| SsrA-binding protein [Enterococcus faecalis TX2134] gi|307285539|ref|ZP_07565678.1| SsrA-binding protein [Enterococcus faecalis TX0860] gi|307287560|ref|ZP_07567603.1| SsrA-binding protein [Enterococcus faecalis TX0109] gi|312902386|ref|ZP_07761592.1| SsrA-binding protein [Enterococcus faecalis TX0635] gi|312953646|ref|ZP_07772483.1| SsrA-binding protein [Enterococcus faecalis TX0102] gi|30248029|sp|P59630|SSRP_ENTFA RecName: Full=SsrA-binding protein gi|29344567|gb|AAO82325.1| SsrA-binding protein [Enterococcus faecalis V583] gi|227072787|gb|EEI10750.1| SsrA-binding protein [Enterococcus faecalis TX0104] gi|227176737|gb|EEI57709.1| SsrA-binding protein [Enterococcus faecalis HH22] gi|229305497|gb|EEN71493.1| SsrA-binding protein [Enterococcus faecalis ATCC 29200] gi|229309908|gb|EEN75895.1| SsrA-binding protein [Enterococcus faecalis TX1322] gi|255962991|gb|EET95467.1| SsrA-binding protein [Enterococcus faecalis T1] gi|255967902|gb|EET98524.1| SsrA-binding protein [Enterococcus faecalis T2] gi|256596399|gb|EEU15575.1| SsrA-binding protein [Enterococcus faecalis ATCC 4200] gi|256684504|gb|EEU24199.1| SsrA-binding protein [Enterococcus faecalis T3] gi|256710869|gb|EEU25912.1| SsrA-binding protein [Enterococcus faecalis T8] gi|256948350|gb|EEU64982.1| SsrA-binding protein [Enterococcus faecalis DS5] gi|256954230|gb|EEU70862.1| SsrA-binding protein [Enterococcus faecalis HIP11704] gi|256987822|gb|EEU75124.1| SsrA-binding protein [Enterococcus faecalis JH1] gi|256989892|gb|EEU77194.1| SsrA-binding protein [Enterococcus faecalis E1Sol] gi|256992434|gb|EEU79736.1| SsrA-binding protein [Enterococcus faecalis Fly1] gi|256995627|gb|EEU82929.1| SsrA-binding protein [Enterococcus faecalis D6] gi|256999568|gb|EEU86088.1| SsrA-binding protein [Enterococcus faecalis CH188] gi|257158632|gb|EEU88592.1| SsrA-binding protein [Enterococcus faecalis ARO1/DG] gi|257161848|gb|EEU91808.1| SsrA-binding protein [Enterococcus faecalis T11] gi|257163625|gb|EEU93585.1| conserved hypothetical protein [Enterococcus faecalis X98] gi|294451512|gb|EFG19972.1| SsrA-binding protein [Enterococcus faecalis PC1.1] gi|295113593|emb|CBL32230.1| SsrA-binding protein [Enterococcus sp. 7L76] gi|300849885|gb|EFK77635.1| SsrA-binding protein [Enterococcus faecalis TUSoD Ef11] gi|306501298|gb|EFM70601.1| SsrA-binding protein [Enterococcus faecalis TX0109] gi|306502763|gb|EFM72028.1| SsrA-binding protein [Enterococcus faecalis TX0860] gi|306506500|gb|EFM75659.1| SsrA-binding protein [Enterococcus faecalis TX2134] gi|306511559|gb|EFM80558.1| SsrA-binding protein [Enterococcus faecalis TX0855] gi|306512979|gb|EFM81620.1| SsrA-binding protein [Enterococcus faecalis TX4248] gi|310628484|gb|EFQ11767.1| SsrA-binding protein [Enterococcus faecalis TX0102] gi|310634056|gb|EFQ17339.1| SsrA-binding protein [Enterococcus faecalis TX0635] gi|315025245|gb|EFT37177.1| SsrA-binding protein [Enterococcus faecalis TX2137] gi|315030328|gb|EFT42260.1| SsrA-binding protein [Enterococcus faecalis TX4000] gi|315032748|gb|EFT44680.1| SsrA-binding protein [Enterococcus faecalis TX0017] gi|315035794|gb|EFT47726.1| SsrA-binding protein [Enterococcus faecalis TX0027] gi|315143753|gb|EFT87769.1| SsrA-binding protein [Enterococcus faecalis TX2141] gi|315148590|gb|EFT92606.1| SsrA-binding protein [Enterococcus faecalis TX4244] gi|315151913|gb|EFT95929.1| SsrA-binding protein [Enterococcus faecalis TX0031] gi|315155497|gb|EFT99513.1| SsrA-binding protein [Enterococcus faecalis TX0043] gi|315159206|gb|EFU03223.1| SsrA-binding protein [Enterococcus faecalis TX0312] gi|315162855|gb|EFU06872.1| SsrA-binding protein [Enterococcus faecalis TX0645] gi|315164957|gb|EFU08974.1| SsrA-binding protein [Enterococcus faecalis TX1302] gi|315168606|gb|EFU12623.1| SsrA-binding protein [Enterococcus faecalis TX1341] gi|315170135|gb|EFU14152.1| SsrA-binding protein [Enterococcus faecalis TX1342] gi|315173366|gb|EFU17383.1| SsrA-binding protein [Enterococcus faecalis TX1346] gi|315576219|gb|EFU88410.1| SsrA-binding protein [Enterococcus faecalis TX0309B] gi|315579204|gb|EFU91395.1| SsrA-binding protein [Enterococcus faecalis TX0630] gi|315582935|gb|EFU95126.1| SsrA-binding protein [Enterococcus faecalis TX0309A] gi|323481551|gb|ADX80990.1| ssrA-binding protein [Enterococcus faecalis 62] gi|327535846|gb|AEA94680.1| SsrA-binding protein [Enterococcus faecalis OG1RF] gi|329578101|gb|EGG59513.1| SsrA-binding protein [Enterococcus faecalis TX1467] Length = 154 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ DRQ R L+ + Sbjct: 126 GKKQYDKREDLKRKEVDRQISRTLKNN 152 >gi|257897966|ref|ZP_05677619.1| SmpB protein [Enterococcus faecium Com15] gi|257835878|gb|EEV60952.1| SmpB protein [Enterococcus faecium Com15] Length = 159 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITIVPLKVYIR-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+ + LA+GKK+YDKRE K++D DRQ R L+ + Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158 >gi|328882771|emb|CCA56010.1| tmRNA-binding protein SmpB [Streptomyces venezuelae ATCC 10712] Length = 179 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 104/150 (69%), Gaps = 2/150 (1%) Query: 2 SLKSRGN-PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 + K++ P +K+++ N+KAR++YHI+ ++E G+VL GTEVKSLR+ + ++ D + +N Sbjct: 13 AKKNQDKAPERKMIAQNKKARHDYHIIDTYECGVVLMGTEVKSLRMGRASLVDGFVQIDN 72 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL + ++PEY+Q + NH +R RKLLL + EI +L A + G T+VP+ +YF Sbjct: 73 HEAWLHSIHVPEYMQGSWTNHSAKRKRKLLLHREEIDKLEAKSQETGHTIVPLALYF-LN 131 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQ 150 G K+++ALA+GKK +DKR+T +++ R+ Sbjct: 132 GRVKVEIALAKGKKEFDKRQTLREKQDTRE 161 >gi|296134179|ref|YP_003641426.1| SsrA-binding protein [Thermincola sp. JR] gi|296032757|gb|ADG83525.1| SsrA-binding protein [Thermincola potens JR] Length = 153 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 76/144 (52%), Positives = 98/144 (68%), Gaps = 1/144 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 +NRKAR++YHI +EAGI L GTEVKSLR K N+ DS+A N E+++ N +I Y Sbjct: 7 IENRKARHDYHIEEVYEAGIELKGTEVKSLRAGKANLKDSFALVRNGEVFVHNMHISPYE 66 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 Q NRFNH P R RKLLL + EI++L A ++ G+TLVP+KIYF G AK+ LALA+GKK Sbjct: 67 QGNRFNHEPTRVRKLLLHRHEINKLIGATKQKGLTLVPLKIYFK-NGRAKMALALARGKK 125 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKR+ RD R+ + RE Sbjct: 126 LYDKRDDMAARDAKREIEKAFRER 149 >gi|218708663|ref|YP_002416284.1| SsrA-binding protein [Vibrio splendidus LGP32] gi|218321682|emb|CAV17636.1| SsrA-binding protein [Vibrio splendidus LGP32] Length = 184 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 24 MAKNKSKSKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLREGKTNIAESYVYIR 83 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S++E+ L + R+GMTLV +Y++ Sbjct: 84 DGEAFISGMTITPLTQASTHIVANPTRIRKLLMSRKELDNLIGRINREGMTLVATALYWS 143 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + AKI + +A+GKK +DKR K++DW R K RI++ + Sbjct: 144 -RSWAKIKVGVAKGKKLHDKRTDMKEKDWARDKARIMKSN 182 >gi|284046030|ref|YP_003396370.1| SsrA-binding protein [Conexibacter woesei DSM 14684] gi|283950251|gb|ADB52995.1| SsrA-binding protein [Conexibacter woesei DSM 14684] Length = 160 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 72/145 (49%), Positives = 96/145 (66%), Gaps = 1/145 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NR+AR+ + ++ +FEAG+VLTGTEVKSLR + D+YA E+WL N +IP Y Sbjct: 15 VATNRQARFRFRLLDTFEAGMVLTGTEVKSLREGGAQMKDAYALVRGGEVWLVNMHIPPY 74 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 A R NH P R+RKLLL +REI RL R G+TLVP +IYF AK ++ALAQGK Sbjct: 75 ASAYRDNHLPERDRKLLLHRREIERLVGKTRERGLTLVPTRIYFRG-ARAKCEIALAQGK 133 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 +DKR++ K R+ R+ R RE+ Sbjct: 134 DQFDKRQSIKSREQAREMQRATREY 158 >gi|331082269|ref|ZP_08331396.1| SsrA-binding protein [Lachnospiraceae bacterium 6_1_63FAA] gi|330403063|gb|EGG82628.1| SsrA-binding protein [Lachnospiraceae bacterium 6_1_63FAA] Length = 156 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS +++++N+KA ++Y I ++EAGI L GTEVKSLR+ K +I +S+ + Sbjct: 1 MAKKSEN----RLIANNKKAYHDYFIEDTYEAGIALAGTEVKSLRMGKCSIKESFIQIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLLL EI ++ +R G TLVP+K+YF Sbjct: 57 GEVFIFGMHISPYEKGNIFNKDPLRVRKLLLHSYEIRKIEGKIREKGYTLVPLKVYFKGS 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ +A+GKK YDKR+ K+D R+ R + N Sbjct: 117 -LVKVEMGVAKGKKLYDKRQDIAKKDQRRETEREFKVKN 154 >gi|311743773|ref|ZP_07717579.1| SsrA-binding protein [Aeromicrobium marinum DSM 15272] gi|311312903|gb|EFQ82814.1| SsrA-binding protein [Aeromicrobium marinum DSM 15272] Length = 157 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 98/160 (61%), Gaps = 9/160 (5%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS +++V+ NRKAR++YHI +FEAG+VLTGTEVKSLR + ++ D + + Sbjct: 1 MSK----ETGRQLVAQNRKARHDYHIEDTFEAGLVLTGTEVKSLRAGRASLVDGFGEIDR 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +IP Y Q NH RR RKLLL++ EI ++ G+T++P+ +YF Sbjct: 57 GEAWLLQVHIPHYSQGTWTNHETRRRRKLLLNRVEIDKIERRTSEKGLTIIPLSLYFKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKR----DWDRQKHRILR 156 G AK+++ALA+GKK YDKR +R + R+ R ++ Sbjct: 116 GRAKVEIALARGKKEYDKRHAIAERTARNEATRELGRRMK 155 >gi|299143289|ref|ZP_07036369.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517774|gb|EFI41513.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 156 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 72/156 (46%), Positives = 97/156 (62%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ NRKAR++Y I + E GI L GTEVKSLR K NISD+YA +N E Sbjct: 1 MMKMAKSVDNALATNRKARHDYFIEDTIETGIELRGTEVKSLRKGKANISDAYAEIKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +++ N +I Y Q N FN P R RKLLL K EI RL G TL+P+K+Y N +G Sbjct: 61 VFVENMHISPYEQGNIFNVDPLRVRKLLLHKSEIRRLERDTTLKGYTLIPLKLYLN-RGR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LA+A+GKK YDKRET K+D R+ + ++E Sbjct: 120 VKLELAVAKGKKLYDKRETLAKKDAQRKIEQAIKER 155 >gi|331091705|ref|ZP_08340539.1| SsrA-binding protein [Lachnospiraceae bacterium 2_1_46FAA] gi|330403462|gb|EGG83021.1| SsrA-binding protein [Lachnospiraceae bacterium 2_1_46FAA] Length = 155 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 97/152 (63%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +S+ EN E+++ Sbjct: 3 KTEGKLIANNKKAYHDYFILDTYEAGISLHGTEVKSLRMGKCSIKESFIRIENGEVFIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R +KLLL K EI+++ + GM +VP+K+YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRVKKLLLHKSEINKMLGKTKEKGMAIVPLKVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR+ K+D R+ R + N Sbjct: 122 GLARGKKLYDKRDDIAKKDQKREAQREFKIRN 153 >gi|330504851|ref|YP_004381720.1| SsrA-binding protein [Pseudomonas mendocina NK-01] gi|328919137|gb|AEB59968.1| SsrA-binding protein [Pseudomonas mendocina NK-01] Length = 160 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + P+ ++ N+KA ++Y + + FEAG+ L G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKH--PQGTIALNKKALHDYFVEQKFEAGVALAGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DE WL ++I + P R RKLLL+KRE+ +L+ AV++ G T V + +Y+ Sbjct: 59 DEAWLMGAHITPLKTASTHVIADPIRTRKLLLNKRELDKLFGAVQQKGYTCVALSLYWKQ 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++ALA+GKK++DKR EK+RD +R+ R +R Sbjct: 119 H-LVKCEIALAKGKKDFDKRHVEKERDANREVQRAMRSK 156 >gi|167751559|ref|ZP_02423686.1| hypothetical protein EUBSIR_02560 [Eubacterium siraeum DSM 15702] gi|167655367|gb|EDR99496.1| hypothetical protein EUBSIR_02560 [Eubacterium siraeum DSM 15702] gi|291530337|emb|CBK95922.1| SsrA-binding protein [Eubacterium siraeum 70/3] Length = 154 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K ++DNRKAR++Y I+ S+EAGI LTGTEVKS+R +N+ DS+ + +N E+++ Sbjct: 3 KTALKTIADNRKARHDYFILESYEAGIELTGTEVKSIRDGGLNLKDSWISIDNGELFIKQ 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLL+ KREI +L V++DG+TL+P+ +YF K+ + Sbjct: 63 MHISPYEKGNIFNKDPLRTRKLLMHKREIMKLLGQVKQDGLTLIPISVYFKGS-RVKVQV 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L +GKK +DKR+ +RD R R L+ N Sbjct: 122 GLCKGKKQHDKRDAMAQRDAKRTIDRELKMRN 153 >gi|332035644|gb|EGI72134.1| tmRNA-binding protein SmpB [Pseudoalteromonas haloplanktis ANT/505] Length = 159 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 93/159 (58%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNI+++Y +N Sbjct: 1 MAKKNSSKSTSNTIALNKKARHEYFLHDKFEAGVELQGWEVKSIRAGKVNITETYIHLKN 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLLS+RE+ RL A RDG +L+ +Y+ Sbjct: 61 GEAFLLGAQIQPLNSASTHVICDPLRYRKLLLSRRELDRLLGATERDGYSLIATAMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K K++ LA+GKK +DKR+ K +DW R+K R+++ Sbjct: 120 KCWVKLEFHLAKGKKLHDKRDDGKNKDWSREKERLMKHK 158 >gi|296116125|ref|ZP_06834743.1| SsrA-binding protein [Gluconacetobacter hansenii ATCC 23769] gi|295977231|gb|EFG83991.1| SsrA-binding protein [Gluconacetobacter hansenii ATCC 23769] Length = 165 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 71/161 (44%), Positives = 100/161 (62%), Gaps = 3/161 (1%) Query: 1 MSLKSRGNPP---KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ K + + + NRK R+NY I+ + EAG+VL G EVKSLR+ + I+++YA Sbjct: 1 MAAKQKNGSGMISTGIAAQNRKGRFNYTILETLEAGLVLKGPEVKSLRMGRATITEAYAA 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 N E+WL NSYIPEY PR RKLLL ++I RL R+G+TLVP+ I+F Sbjct: 61 ERNGELWLFNSYIPEYQGGVLSRFEPRAPRKLLLHGKQIDRLLGESARNGVTLVPLDIHF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 N++GLAK+ L + +G+K DKR +RDW R K R++R Sbjct: 121 NSRGLAKLTLGIGEGRKKADKRHAIAERDWQRDKARLIRNK 161 >gi|328956763|ref|YP_004374149.1| SsrA-binding protein [Carnobacterium sp. 17-4] gi|328673087|gb|AEB29133.1| SsrA-binding protein [Carnobacterium sp. 17-4] Length = 152 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ NRKA Y++ I+ + EAGIVL GTE+KS+R ++N+ D YA +N EI+L N Sbjct: 3 KGSGKVLAQNRKASYDFSILDTVEAGIVLQGTEIKSIRAGRINLKDGYAKIQNGEIYLHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N+FNH P R RKLL+ K++I L + G TL+P+K+Y G AK+ + Sbjct: 63 VHISPYEQGNQFNHDPLRTRKLLMHKKQITNLLGETKSSGNTLIPLKVYLKD-GYAKVLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKRE K++D R+ R LR Sbjct: 122 GLAKGKKKYDKREDLKRKDQKRELDRALRSR 152 >gi|84623561|ref|YP_450933.1| SsrA-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123522246|sp|Q2P468|SSRP_XANOM RecName: Full=SsrA-binding protein gi|84367501|dbj|BAE68659.1| small protein B [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 167 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 63/157 (40%), Positives = 100/157 (63%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K+ G K ++ N++AR+ YH+ +EAG+ L G E+K++R + NI D YA + EI Sbjct: 9 KANGAKATKTIALNKRARHEYHLEERYEAGLALQGWEIKAIRAGRANIVDGYAYVRSGEI 68 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I +Q + RR+RKLLL + EI ++ V R+G TLVP +Y+++ Sbjct: 69 YLIGAQITPLIQASTHTVPVERRDRKLLLHRAEIDKVLTRVEREGYTLVPTALYWSSN-K 127 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GK+N+DKR+ K+RDW R K R++R HN Sbjct: 128 VKLEIALAKGKQNHDKRDAAKERDWQRDKQRVMRRHN 164 >gi|15602082|ref|NP_245154.1| SsrA-binding protein [Pasteurella multocida subsp. multocida str. Pm70] gi|13431892|sp|P57827|SSRP_PASMU RecName: Full=SsrA-binding protein gi|12720441|gb|AAK02301.1| SmpB [Pasteurella multocida subsp. multocida str. Pm70] Length = 160 Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++AR++Y I EAG+ L G EVKS+R K NISDSY F+ E Sbjct: 3 KKKVKVGTNTIALNKRARHDYFIEDEMEAGLELQGWEVKSMRAGKANISDSYIIFKQGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL ++E+ L+ RDG T+V + +Y+ Sbjct: 63 YLFGATIQPLNVASTHIVCDPTRTRKLLLKQKELASLFGKANRDGYTIVALSLYWKG-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK +DKRE K+R+W K RI++ Sbjct: 122 AKLKIGLAKGKKQHDKREDIKEREWKVTKDRIMKN 156 >gi|227498461|ref|ZP_03928607.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226903919|gb|EEH89837.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 155 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 76/153 (49%), Positives = 100/153 (65%), Gaps = 2/153 (1%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY-ATFENDEIWLT 66 K++++NRKAR++Y I +FE G+VLTGTEVKSLR K N+ DSY A ++ E++L Sbjct: 3 KTNVKIIAENRKARHDYAIHETFETGVVLTGTEVKSLRAGKANLKDSYAAITKSGELYLY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I EY N FNH PRR+RKLL+ KREI +L + G TLVP+ +YF+ GL K+ Sbjct: 63 NLHISEYDHGNIFNHEPRRDRKLLMHKREIAKLIGKTKEKGFTLVPLTLYFS-HGLVKVK 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LALA GKK YDKR R R+ R L+ N Sbjct: 122 LALATGKKLYDKRRDMADRSAKREIDRALKSRN 154 >gi|77456982|ref|YP_346487.1| SsrA-binding protein [Pseudomonas fluorescens Pf0-1] gi|123606021|sp|Q3KIA8|SSRP_PSEPF RecName: Full=SsrA-binding protein gi|77380985|gb|ABA72498.1| SsrA-binding protein [Pseudomonas fluorescens Pf0-1] Length = 160 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL G EVKSLR SK+ + DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL++RE+ +L AAV++ G V + Y++ Sbjct: 59 GEAWLLGSHITPLMTASTHVIADPVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + K ++AL +GKK YDKR+TE++RD R+ R +R Sbjct: 119 H-MVKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNK 156 >gi|163789778|ref|ZP_02184215.1| SsrA-binding protein [Carnobacterium sp. AT7] gi|159875000|gb|EDP69067.1| SsrA-binding protein [Carnobacterium sp. AT7] Length = 152 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ NRKA Y++ I+ + EAGIVL GTE+KS+R ++N+ D YA +N EI+L N +I Sbjct: 7 KVLAQNRKASYDFSILDTVEAGIVLQGTEIKSIRAGRINLKDGYAKIQNGEIFLHNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N+FNH P R RKLL+ K++I RL + G TL+P+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNQFNHDPLRTRKLLMHKKQIVRLLGETKSSGNTLIPLKVYLKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K++D R+ R LR Sbjct: 126 GKKKYDKREDLKRKDQKRELDRALRSR 152 >gi|315634748|ref|ZP_07890031.1| SsrA-binding protein [Aggregatibacter segnis ATCC 33393] gi|315476506|gb|EFU67255.1| SsrA-binding protein [Aggregatibacter segnis ATCC 33393] Length = 160 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R K N+SDSY F+N E Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEGEIEAGLELQGWEVKSMRAGKANLSDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL +RE+ L+ RDG TL+ + +Y+ Sbjct: 63 FLFGASIQPLSVASTHVVCDPTRTRKLLLKQRELDSLFGKANRDGFTLIALSLYWKG-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKRE K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKREDIKEREWKVAKERIMKN 156 >gi|6686320|sp|P43659|SSRP_ENTHR RecName: Full=SsrA-binding protein Length = 154 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFVRIRNGEAFLHNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL + G+T+VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQISRLETETKNTGVTIVPLKVYIRD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK+YDKRE K++D DRQ R L+ + Sbjct: 126 GKKSYDKREDLKRKDVDRQIDRTLKNFS 153 >gi|312885013|ref|ZP_07744702.1| SsrA-binding protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309367345|gb|EFP94908.1| SsrA-binding protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 161 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKSLRQGKANIAESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLLLS+RE+ L + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLLSRRELDNLLGRINREGMTLAALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|301169706|emb|CBW29307.1| trans-translation protein [Haemophilus influenzae 10810] Length = 161 Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 91/155 (58%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I E+G+ L G EVKS+R K NISDSY F+N E Sbjct: 3 KKKVKPNSNTIALNKRARHDYFIEDEIESGLELQGWEVKSMRAGKANISDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL+KRE+ L+ RDG T+V + +Y+ + Sbjct: 63 FLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGKANRDGFTIVALSLYWKS-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKR+ K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 156 >gi|28871649|ref|NP_794268.1| SsrA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213966671|ref|ZP_03394822.1| SsrA-binding protein [Pseudomonas syringae pv. tomato T1] gi|301383181|ref|ZP_07231599.1| SsrA-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302063384|ref|ZP_07254925.1| SsrA-binding protein [Pseudomonas syringae pv. tomato K40] gi|302133757|ref|ZP_07259747.1| SsrA-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|37999559|sp|Q87WN1|SSRP_PSESM RecName: Full=SsrA-binding protein gi|28854901|gb|AAO57963.1| SsrA-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213928521|gb|EEB62065.1| SsrA-binding protein [Pseudomonas syringae pv. tomato T1] gi|330877256|gb|EGH11405.1| SsrA-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330963952|gb|EGH64212.1| SsrA-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016625|gb|EGH96681.1| SsrA-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 160 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +I + P R RKLLL++RE+ +L ++V++ G V + IY+ Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTSSVQQKGYACVALSIYWKQ 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRTK 156 >gi|107028821|ref|YP_625916.1| SsrA-binding protein [Burkholderia cenocepacia AU 1054] gi|116690020|ref|YP_835643.1| SsrA-binding protein [Burkholderia cenocepacia HI2424] gi|134296008|ref|YP_001119743.1| SsrA-binding protein [Burkholderia vietnamiensis G4] gi|170733355|ref|YP_001765302.1| SsrA-binding protein [Burkholderia cenocepacia MC0-3] gi|206560433|ref|YP_002231197.1| SsrA-binding protein [Burkholderia cenocepacia J2315] gi|254247903|ref|ZP_04941224.1| SmpB protein [Burkholderia cenocepacia PC184] gi|123180011|sp|Q1BHG2|SSRP_BURCA RecName: Full=SsrA-binding protein gi|166222366|sp|A0K8C3|SSRP_BURCH RecName: Full=SsrA-binding protein gi|166222372|sp|A4JF55|SSRP_BURVG RecName: Full=SsrA-binding protein gi|105897985|gb|ABF80943.1| SsrA-binding protein [Burkholderia cenocepacia AU 1054] gi|116648109|gb|ABK08750.1| SsrA-binding protein [Burkholderia cenocepacia HI2424] gi|124872679|gb|EAY64395.1| SmpB protein [Burkholderia cenocepacia PC184] gi|134139165|gb|ABO54908.1| SsrA-binding protein [Burkholderia vietnamiensis G4] gi|169816597|gb|ACA91180.1| SsrA-binding protein [Burkholderia cenocepacia MC0-3] gi|198036474|emb|CAR52371.1| SSRA-binding protein [Burkholderia cenocepacia J2315] Length = 148 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|227513640|ref|ZP_03943689.1| SsrA-binding protein [Lactobacillus buchneri ATCC 11577] gi|227083156|gb|EEI18468.1| SsrA-binding protein [Lactobacillus buchneri ATCC 11577] Length = 157 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +++ N+KAR++Y I+ ++EAGIVLTGTE+KS+R ++N+ D + N Sbjct: 1 MAKRKHKQNNDNLMAQNKKARHDYSILETYEAGIVLTGTEIKSIRDRRINLKDGFVQIRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E ++ N +I EY Q N+ NH P RNRKLLL K+EI +L A + G+T+VP+K+Y + Sbjct: 61 GEAYMVNVHISEYAQGNQINHDPLRNRKLLLHKKEIRKLGQATQDKGVTIVPLKVYLKS- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GK+ YDKRET K+RD R R+++ Sbjct: 120 GFAKVLIGVAKGKREYDKRETIKRRDEQRTIERVMKRF 157 >gi|315187228|gb|EFU20985.1| SsrA-binding protein [Spirochaeta thermophila DSM 6578] Length = 153 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ KV+ +N++AR++Y I + E GI L G+EVKS++ +V+ D+Y +N Sbjct: 1 MAKQN----DIKVIGENKRARFDYLIEDTLECGIELKGSEVKSVKEGRVSFGDAYVRVKN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE+WL +I Y A NH P R RKLL EIH+L G TLVP++ Y + Sbjct: 57 DELWLMGLHITPYSHATIENHDPLRPRKLLAHAEEIHQLRRKTEERGYTLVPLRFYVK-R 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K+ + +A+GKK ++KRE K+RD R+ R LR + Sbjct: 116 GLVKVLVGIAKGKKKHEKREAIKERDIKREMDRELRRY 153 >gi|62263009|gb|AAX78119.1| unknown protein [synthetic construct] Length = 192 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 93/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ ++ Sbjct: 24 MLEMSKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKH 83 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL N P + RKLLL++REI+++ + + G T +P+ +Y+ Sbjct: 84 GEAWLFNCLITPLLSASTHVVADAAATRKLLLNRREINKIMGRIEQKGFTCIPLSMYWKG 143 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALAQGKK +DKR+ +K +DW R+K R+ ++ Sbjct: 144 P-RVKVEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 180 >gi|254252078|ref|ZP_04945396.1| tmRNA-binding protein [Burkholderia dolosa AUO158] gi|124894687|gb|EAY68567.1| tmRNA-binding protein [Burkholderia dolosa AUO158] Length = 148 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 68/144 (47%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RILR Sbjct: 122 KKLHDKRETEKKRDWEREKARILR 145 >gi|331701668|ref|YP_004398627.1| SsrA-binding protein [Lactobacillus buchneri NRRL B-30929] gi|329129011|gb|AEB73564.1| SsrA-binding protein [Lactobacillus buchneri NRRL B-30929] Length = 157 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + +++ N+KAR++Y I ++EAGIVLTGTE+KS+R ++N+ D + N Sbjct: 1 MAKGKKQHNNDNLMAQNKKARHDYSISETYEAGIVLTGTEIKSIRARRINLKDGFVQIRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE ++ N +I EY + N+FNH P RNRKLLL K++I +L + G+T+VP+K+Y Sbjct: 61 DEAYMMNVHISEYAEGNQFNHDPLRNRKLLLHKKQIRKLAQITQDKGVTIVPLKVYLK-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A GK YDKRET K+RD RQ R+++ + Sbjct: 120 GFAKVLIGVATGKHEYDKRETIKRRDQKRQIERVMKHY 157 >gi|119897867|ref|YP_933080.1| SsrA-binding protein [Azoarcus sp. BH72] gi|166222357|sp|A1K5T8|SSRP_AZOSB RecName: Full=SsrA-binding protein gi|119670280|emb|CAL94193.1| probable SsrA-binding protein [Azoarcus sp. BH72] Length = 148 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R + NI ++Y +EI++ +I Sbjct: 3 IIDNRKAYHDYFIEEKYEAGLVLEGWEVKAIRAGRANIKEAYIIVRGEEIFILGMHITPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL EI RL V R G TLVP+ +++ AKG K ++ LA+G Sbjct: 63 ASASTHIRTDPTRTRKLLLHGAEIARLIGKVERAGFTLVPLDLHY-AKGRVKAEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK YDKRE EKKRDW+R+K R++R Sbjct: 122 KKQYDKREDEKKRDWEREKQRLMR 145 >gi|300932670|ref|ZP_07147926.1| SsrA-binding protein [Corynebacterium resistens DSM 45100] Length = 184 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 72/152 (47%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 VV+ NRKAR++YHI+ ++E G+VL GTEVK+LR K ++ D+YAT + E+WL Sbjct: 28 KGAGPLVVATNRKARHDYHILDTYECGVVLVGTEVKALREGKASLVDAYATIDEGEVWLR 87 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY + NH PRR RKLLL +REI L VR TLVP+++YF A G K++ Sbjct: 88 GLHIPEYSMGHWTNHSPRRTRKLLLHRREIDSLMGKVRDGNSTLVPLQLYFVA-GRLKVE 146 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA+GK+ YDKR+ K+R +R+ R + Sbjct: 147 LALARGKQEYDKRQDIKRRTEEREITREMGRR 178 >gi|256961147|ref|ZP_05565318.1| SsrA-binding protein [Enterococcus faecalis Merz96] gi|293386908|ref|ZP_06631477.1| SsrA-binding protein [Enterococcus faecalis S613] gi|312907956|ref|ZP_07766939.1| SsrA-binding protein [Enterococcus faecalis DAPTO 512] gi|312978516|ref|ZP_07790254.1| SsrA-binding protein [Enterococcus faecalis DAPTO 516] gi|256951643|gb|EEU68275.1| SsrA-binding protein [Enterococcus faecalis Merz96] gi|291083578|gb|EFE20541.1| SsrA-binding protein [Enterococcus faecalis S613] gi|310626047|gb|EFQ09330.1| SsrA-binding protein [Enterococcus faecalis DAPTO 512] gi|311288665|gb|EFQ67221.1| SsrA-binding protein [Enterococcus faecalis DAPTO 516] Length = 154 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNAGITLVPLKVYIKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ DRQ R L+ + Sbjct: 126 GKKQYDKREDLKRKEVDRQISRTLKNN 152 >gi|253699883|ref|YP_003021072.1| SsrA-binding protein [Geobacter sp. M21] gi|251774733|gb|ACT17314.1| SsrA-binding protein [Geobacter sp. M21] Length = 157 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I +EAG+VL GTEVKSLR K N++DS+A +N E +L N + Sbjct: 2 GEKLICNNKKAFHDYFIEERYEAGMVLQGTEVKSLRNGKANLNDSFAMVKNGEAFLHNFH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLLL K+EI +L++ +R G TL+P++IYF G K +L L Sbjct: 62 ILPYDFGNRENHDPDRMRKLLLHKKEIVKLFSKIREQGYTLIPLRIYFKD-GKVKAELGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKKNYDKRE K++D R L+E + Sbjct: 121 AKGKKNYDKREVLKQKDVQRDIVAGLKERS 150 >gi|229916579|ref|YP_002885225.1| SsrA-binding protein [Exiguobacterium sp. AT1b] gi|259511422|sp|C4L5G5|SSRP_EXISA RecName: Full=SsrA-binding protein gi|229468008|gb|ACQ69780.1| SsrA-binding protein [Exiguobacterium sp. AT1b] Length = 156 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K N ++ NRKA ++Y I + EAG+VLTGTE+KS+R SK+NI+D+Y F+ Sbjct: 1 MAKKKDSNA----LAQNRKASFDYAIEDTIEAGMVLTGTEIKSVRQSKINIADAYVRFDG 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E L N +I + Q NRFNH P R RKLLL K++I++L A RDG T++P+K+Y Sbjct: 57 GEATLHNCHISPFEQGNRFNHDPLRVRKLLLHKKQINQLIGASGRDGYTIIPLKVYIK-N 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK L + +GKK YDKRE KK+D R R +R+ Sbjct: 116 GFAKCLLGVGKGKKKYDKREDLKKKDAKRDVDRAMRDR 153 >gi|222055956|ref|YP_002538318.1| SsrA-binding protein [Geobacter sp. FRC-32] gi|221565245|gb|ACM21217.1| SsrA-binding protein [Geobacter sp. FRC-32] Length = 151 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ +N+KA ++Y I FEAG+VL GTEVKSLR K N++DS+A +N E +L N + Sbjct: 2 SEKLICNNKKAYHDYFIEEKFEAGMVLKGTEVKSLRNGKANLNDSFALIKNGEAFLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLLL K+EI +L+ +R G ++VP+++YF GL K++L + Sbjct: 62 ISPYDFGNRENHDPDRMRKLLLHKKEIGKLFGKIREQGYSVVPLRLYFKT-GLVKVELGM 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE KK+D R L+E N Sbjct: 121 AKGKKLYDKREDMKKKDMRRDVAVALKERN 150 >gi|161524450|ref|YP_001579462.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616] gi|189350795|ref|YP_001946423.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616] gi|221198302|ref|ZP_03571348.1| SsrA-binding protein [Burkholderia multivorans CGD2M] gi|221208241|ref|ZP_03581245.1| SsrA-binding protein [Burkholderia multivorans CGD2] gi|221215477|ref|ZP_03588441.1| SsrA-binding protein [Burkholderia multivorans CGD1] gi|160341879|gb|ABX14965.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616] gi|189334817|dbj|BAG43887.1| SsrA-binding protein [Burkholderia multivorans ATCC 17616] gi|221164661|gb|EED97143.1| SsrA-binding protein [Burkholderia multivorans CGD1] gi|221171889|gb|EEE04332.1| SsrA-binding protein [Burkholderia multivorans CGD2] gi|221182234|gb|EEE14635.1| SsrA-binding protein [Burkholderia multivorans CGD2M] Length = 148 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|297623814|ref|YP_003705248.1| SsrA-binding protein [Truepera radiovictrix DSM 17093] gi|297164994|gb|ADI14705.1| SsrA-binding protein [Truepera radiovictrix DSM 17093] Length = 143 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 69/143 (48%), Positives = 94/143 (65%), Gaps = 1/143 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 NR+A ++Y ++ FEAG+VLTG+EVK+LR V + ++YA E+WL YIP Y Sbjct: 2 IQNRRASFDYELLERFEAGLVLTGSEVKALRQGGVTLGEAYARVRGGEVWLEGLYIPPYK 61 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 +A+ NH PRR RKLLL REI + A+ R G+TLVP K+YF G AK+++AL +GKK Sbjct: 62 EASYNNHEPRRPRKLLLRAREIAEVQRALERKGLTLVPTKLYFK-NGWAKLEVALGRGKK 120 Query: 135 NYDKRETEKKRDWDRQKHRILRE 157 +DKR+ KRD RQ R L+ Sbjct: 121 RFDKRQDAAKRDAQRQIERALKR 143 >gi|294786678|ref|ZP_06751932.1| SsrA-binding protein [Parascardovia denticolens F0305] gi|294485511|gb|EFG33145.1| SsrA-binding protein [Parascardovia denticolens F0305] Length = 156 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 2/148 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE-IWLTNSYIP 71 V++ NR+AR++Y + EAG+VL GTEVKSLR + ++S ++ T + +WL + IP Sbjct: 3 VIALNRRARHDYTLENRVEAGLVLRGTEVKSLREGRASLSQAFVTIDPHHEMWLEGANIP 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EYL NH P+R RKLLL +I R ++ G T+VP+ +YF G K+++ALA+ Sbjct: 63 EYLNGTWTNHAPKRKRKLLLHADQITRFERGIQAKGYTIVPLSLYFKE-GRVKVEIALAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKR+ ++ R+ R +R HN Sbjct: 122 GKKEYDKRQALREEQDKREAQRQMRLHN 149 >gi|225575031|ref|ZP_03783641.1| hypothetical protein RUMHYD_03112 [Blautia hydrogenotrophica DSM 10507] gi|225037755|gb|EEG48001.1| hypothetical protein RUMHYD_03112 [Blautia hydrogenotrophica DSM 10507] Length = 155 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 58/153 (37%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +++++N+KA ++Y I ++EAG+ L GTEVKSLR K +I +++ E E+++ Sbjct: 3 KKESIRLIANNKKAFHDYFIDDTYEAGVELFGTEVKSLRNGKCSIKEAFIRIEKGEVYVY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 ++ Y + N FN P R +KLLL + EI +L + + G TLVP+K+YF L K++ Sbjct: 63 GMHVSPYEKGNIFNKDPLRVKKLLLHRYEIQKLEGKIAQKGYTLVPLKVYFKGS-LVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR+ K+D R+ R + N Sbjct: 122 VGLARGKKLYDKRQDIAKKDQKREAQREFKIKN 154 >gi|126654056|ref|ZP_01725883.1| SsrA-binding protein [Bacillus sp. B14905] gi|126589461|gb|EAZ83607.1| SsrA-binding protein [Bacillus sp. B14905] Length = 155 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 99/152 (65%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I + EAG+VLTGTE+KS+R K + DSY N E W++N Sbjct: 3 KGSGKVLAQNKKAGHDYFIEETIEAGMVLTGTEIKSIRAGKAQLKDSYVRITNGEAWISN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 ++ + Q NRFNH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ + Sbjct: 63 MHVSPFDQGNRFNHDPLRARKLLLHKKQIGELVGAVKRDGYTIVPLKMYIKD-GYAKLLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + +GKK+YDKR +K++ R+ R + +N Sbjct: 122 GVGKGKKDYDKRNDMRKKEAKREMERTFKSNN 153 >gi|153955984|ref|YP_001396749.1| SsrA-binding protein [Clostridium kluyveri DSM 555] gi|219856325|ref|YP_002473447.1| hypothetical protein CKR_2982 [Clostridium kluyveri NBRC 12016] gi|187611476|sp|A5N2N2|SSRP_CLOK5 RecName: Full=SsrA-binding protein gi|254778355|sp|B9E6A8|SSRP_CLOK1 RecName: Full=SsrA-binding protein gi|146348842|gb|EDK35378.1| Hypothetical protein CKL_3375 [Clostridium kluyveri DSM 555] gi|219570049|dbj|BAH08033.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 157 Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ K +++NRKAR++Y I S EAGI L GTEVKS+R K N+ DSY N E Sbjct: 1 MSAKNKSNNKTLAENRKARHDYFIEESMEAGIQLVGTEVKSIRAGKSNLKDSYGEIINGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I++ N +I Y + N FN P R+RKLLL K+EI RL + G T+VP+ +Y G Sbjct: 61 IFIRNMHISPYEKGNIFNRDPLRDRKLLLHKKEIARLLGYTAQQGYTIVPLSLYLK-NGR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++LA+A+GKKNYDKR++ ++ R R ++E Sbjct: 120 VKVNLAVAKGKKNYDKRDSMLEKAAKRDIERQMKER 155 >gi|261856125|ref|YP_003263408.1| SsrA-binding protein [Halothiobacillus neapolitanus c2] gi|261836594|gb|ACX96361.1| SsrA-binding protein [Halothiobacillus neapolitanus c2] Length = 158 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS + + ++ N+KA+++Y + FEAGI L G EVKSLR KV ++D++ +N Sbjct: 1 MSKTKKS-AGESTIALNKKAKFDYFLNDRFEAGIALEGWEVKSLREGKVQLTDAHILLKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ I +Q ++ R RKLLL KREI +L AV R G T+VP +Y+ Sbjct: 60 GEAFMIGGQINPLIQASSHVRPDNTRIRKLLLHKREIAQLIGAVDRKGFTVVPTAMYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 G AK+++ALAQGKK++DKR T K++DW R K RILR Sbjct: 119 NGRAKLEIALAQGKKDHDKRATLKEKDWARDKQRILR 155 >gi|237798540|ref|ZP_04587001.1| SsrA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021393|gb|EGI01450.1| SsrA-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 160 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 93/159 (58%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +I + P R RKLLL++RE+ +L AV++ G V + IY+ Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNQRELEKLTTAVQQKGYACVALSIYWKQ 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156 >gi|257882700|ref|ZP_05662353.1| SmpB protein [Enterococcus faecium 1,231,502] gi|257892979|ref|ZP_05672632.1| SmpB protein [Enterococcus faecium 1,231,408] gi|257895354|ref|ZP_05675007.1| SmpB protein [Enterococcus faecium Com12] gi|261208699|ref|ZP_05923136.1| SmpB protein [Enterococcus faecium TC 6] gi|289566044|ref|ZP_06446481.1| SsrA-binding protein [Enterococcus faecium D344SRF] gi|257818358|gb|EEV45686.1| SmpB protein [Enterococcus faecium 1,231,502] gi|257829358|gb|EEV55965.1| SmpB protein [Enterococcus faecium 1,231,408] gi|257831919|gb|EEV58340.1| SmpB protein [Enterococcus faecium Com12] gi|260077201|gb|EEW64921.1| SmpB protein [Enterococcus faecium TC 6] gi|289162151|gb|EFD10014.1| SsrA-binding protein [Enterococcus faecium D344SRF] Length = 159 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITVVPLKVYIR-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+ + LA+GKK+YDKRE K++D DRQ R L+ + Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158 >gi|317051882|ref|YP_004112998.1| SsrA-binding protein [Desulfurispirillum indicum S5] gi|316946966|gb|ADU66442.1| SsrA-binding protein [Desulfurispirillum indicum S5] Length = 150 Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 96/150 (64%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K++SDNR AR+++ I+ + E G+VL G+EVKS+R KVN+ D+Y + E++L + Sbjct: 2 GIKIISDNRSARHHFEILETLETGVVLKGSEVKSIRQGKVNLKDAYCRVDRGELFLFQCH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y +A P R RKLL K EI +L A ++ G+ +VP K+YF G K+++AL Sbjct: 62 ISPYEEAGPMAPDPTRVRKLLAHKMEIDKLAAKAQQGGLAIVPTKMYFK-NGKVKVEVAL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKRE+ K++D R+ + L+ H+ Sbjct: 121 GKGKKLHDKRESLKQKDAQREAQQALKSHS 150 >gi|226946328|ref|YP_002801401.1| SsrA-binding protein [Azotobacter vinelandii DJ] gi|30173316|sp|Q8KTI4|SSRP_AZOVI RecName: Full=SsrA-binding protein gi|259511415|sp|C1DFN0|SSRP_AZOVD RecName: Full=SsrA-binding protein gi|22652757|gb|AAN03803.1|AF490983_3 small protein B [Azotobacter vinelandii] gi|226721255|gb|ACO80426.1| SsrA-binding protein [Azotobacter vinelandii DJ] Length = 160 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KA ++Y I + FEAG+ L+G EVKSLR K + DSY ++ Sbjct: 1 MAKQKKHPQGN--IAQNKKALHDYFIEQKFEAGLALSGWEVKSLRAGKAQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL S+I + P R RKLLL KRE+ RL+ +V++ G V + +Y+ Sbjct: 59 GEAWLMGSHITPLKTASTHVIADPTRTRKLLLHKRELGRLFGSVQQKGYACVALSLYWKK 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++ALA+GKK YDKR+TEK RD DR+ R +R Sbjct: 119 H-LIKCEIALAKGKKEYDKRDTEKARDSDREIQRAIRSK 156 >gi|315304612|ref|ZP_07874849.1| SsrA-binding protein [Listeria ivanovii FSL F6-596] gi|313627018|gb|EFR95914.1| SsrA-binding protein [Listeria ivanovii FSL F6-596] Length = 154 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ N+KAR++Y I +FEAGIVL GTE+KS+R ++VN+ DSYA + EI+L N +I Sbjct: 7 KLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL K++I L + G ++VP+K+Y G AK+ + +A+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHKKQISHLIGETKESGYSIVPLKMYIKD-GYAKVLIGVAR 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR+ K+++ R R +E Sbjct: 126 GKKKYDKRQDLKQKEAKRDIERAFKER 152 >gi|187478250|ref|YP_786274.1| SsrA-binding protein [Bordetella avium 197N] gi|123515008|sp|Q2L136|SSRP_BORA1 RecName: Full=SsrA-binding protein gi|115422836|emb|CAJ49364.1| SsrA-binding protein [Bordetella avium 197N] Length = 153 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 89/145 (61%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVKS+R +V + +SY + E++L ++ Sbjct: 3 IIDNRKASHDYFIEDRYEAGLVLQGWEVKSIRAGRVQLKESYVIVRDGELFLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL EIH+L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEIHKLIGKVEQRGFTLVPLNLHYK-NGRVKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKR+T +++DW R++ R+++ Sbjct: 122 KKLYDKRDTSREKDWLRERERVMKH 146 >gi|66047430|ref|YP_237271.1| SsrA-binding protein [Pseudomonas syringae pv. syringae B728a] gi|302185409|ref|ZP_07262082.1| SsrA-binding protein [Pseudomonas syringae pv. syringae 642] gi|75500687|sp|Q4ZNN9|SSRP_PSEU2 RecName: Full=SsrA-binding protein gi|63258137|gb|AAY39233.1| SmpB protein [Pseudomonas syringae pv. syringae B728a] gi|330969628|gb|EGH69694.1| SsrA-binding protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 160 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +I + P R RKLLL+KRE+ +L ++V++ G V + +Y+ Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKE 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LVKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156 >gi|312868390|ref|ZP_07728590.1| SsrA-binding protein [Streptococcus parasanguinis F0405] gi|322389983|ref|ZP_08063522.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 903] gi|311096135|gb|EFQ54379.1| SsrA-binding protein [Streptococcus parasanguinis F0405] gi|321143296|gb|EFX38735.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 903] Length = 155 Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 107/148 (72%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQDPDRRRKLLLHKKQIQKLDQDTKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++++N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKQYN 153 >gi|323494432|ref|ZP_08099541.1| SsrA-binding protein [Vibrio brasiliensis LMG 20546] gi|323311362|gb|EGA64517.1| SsrA-binding protein [Vibrio brasiliensis LMG 20546] Length = 161 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGMELQGWEVKSLRQGKANIAESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLLLS+RE+ L + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHIVANPTRVRKLLLSRRELDNLLGRINREGMTLAALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|199597282|ref|ZP_03210713.1| SsrA-binding protein [Lactobacillus rhamnosus HN001] gi|229551790|ref|ZP_04440515.1| SsrA-binding protein SmpB [Lactobacillus rhamnosus LMS2-1] gi|258539189|ref|YP_003173688.1| SsrA-binding protein [Lactobacillus rhamnosus Lc 705] gi|199591798|gb|EDY99873.1| SsrA-binding protein [Lactobacillus rhamnosus HN001] gi|229314844|gb|EEN80817.1| SsrA-binding protein SmpB [Lactobacillus rhamnosus LMS2-1] gi|257150865|emb|CAR89837.1| SsrA-binding protein [Lactobacillus rhamnosus Lc 705] Length = 157 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL N +I Y + N FN P RNRKLLL K+EI +L R G+TLVP+++Y Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQGVTLVPLRMYLK-H 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GK NYDKRET K++D +R+ R L+ Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 156 >gi|119471585|ref|ZP_01613999.1| SsrA-binding protein [Alteromonadales bacterium TW-7] gi|119445528|gb|EAW26814.1| SsrA-binding protein [Alteromonadales bacterium TW-7] Length = 159 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNIS++Y +N Sbjct: 1 MAKKNSSKSTSNTIALNKKARHEYFLHDKFEAGVELQGWEVKSIRAGKVNISETYIHLKN 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S I + P R RKLLLS+RE+ RL A RDG +LV +Y+ Sbjct: 61 GEAFLLGSQIQPLNSASTHVICDPMRYRKLLLSRRELDRLVGATERDGYSLVATAMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K K++ LA+GKK +DKRE K +DW R+K R+++ Sbjct: 120 KCWVKLEFHLAKGKKMHDKREDGKNKDWSREKERLMKHK 158 >gi|325528305|gb|EGD05464.1| SsrA-binding protein [Burkholderia sp. TJI49] Length = 148 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y ++ EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVIKHAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIKPDPVRTRKLLLHRDEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKRDW+R+K RI+R Sbjct: 122 KKLHDKRETEKKRDWEREKARIMR 145 >gi|239905387|ref|YP_002952126.1| SsrA-binding protein [Desulfovibrio magneticus RS-1] gi|259511419|sp|C4XJ76|SSRP_DESMR RecName: Full=SsrA-binding protein gi|239795251|dbj|BAH74240.1| SsrA-binding protein [Desulfovibrio magneticus RS-1] Length = 154 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +K+V+ N+KAR+ Y + +EAG+VL G+EVKSLR+ +++ D Y F++ Sbjct: 1 MAAKE---SGEKLVALNKKARHLYEFLEKYEAGLVLMGSEVKSLRLGRISFKDGYVKFQD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E ++ +I Y A H P R RKLLL EI+ + V + G+T+VP+++YF Sbjct: 58 GEAFMIGVHIAPYENAGYAGHEPERPRKLLLHAAEINAMRVKVEQKGLTVVPVRVYFK-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+GKK +D+R+ K RD DR R L H Sbjct: 117 GRAKVEIALARGKKVFDRRDDLKSRDLDRDAARELARH 154 >gi|118602404|ref|YP_903619.1| SsrA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166223448|sp|A1AW41|SSRP_RUTMC RecName: Full=SsrA-binding protein gi|118567343|gb|ABL02148.1| SsrA-binding protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 165 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 104/161 (64%), Gaps = 3/161 (1%) Query: 1 MSLKSRG-NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ ++ +++ N+KAR+NY I ++ EAG+ L G EVKSLR SKV I +SY + Sbjct: 1 MAKNNKKIKTSLNIIALNKKARHNYFIEQTLEAGLSLEGWEVKSLRDSKVQIKESYVILK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N+E++L ++I + N R RKLLL++ EI+R+ + + G T+VP+K+Y+ Sbjct: 61 NNELFLFGAHISPLKSVSTHVNSDSTRTRKLLLNRLEINRIKDNINQKGATIVPLKLYW- 119 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+G K+++ +A+GKK++DKR+ K +DW R K R L+E N Sbjct: 120 ARGKVKLEIGMAKGKKSHDKRQDIKLKDWQRDKQRTLKETN 160 >gi|300858000|ref|YP_003782983.1| hypothetical protein cpfrc_00582 [Corynebacterium pseudotuberculosis FRC41] gi|300685454|gb|ADK28376.1| hypothetical protein cpfrc_00582 [Corynebacterium pseudotuberculosis FRC41] gi|302205727|gb|ADL10069.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis C231] gi|302330281|gb|ADL20475.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis 1002] gi|308275964|gb|ADO25863.1| SsrA-binding protein/SmpB superfamily [Corynebacterium pseudotuberculosis I19] Length = 163 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 69/146 (47%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ NRKAR++Y I+ S+E GIVL GTE+KSLR K ++ D++AT + E+WL N IP Sbjct: 13 VIATNRKARHDYKILESYECGIVLLGTEIKSLREGKASLVDAFATIDEGEVWLRNLNIPI 72 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH P+R RKLL+ +REI L VR TLVP+ +YF+ G K++L LAQG Sbjct: 73 YSMGSWTNHSPKRTRKLLMHRREIDSLMGKVRDGNKTLVPLSLYFSG-GRLKVELGLAQG 131 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K++YDKR+ K+R +R+ R L Sbjct: 132 KQDYDKRQDIKRRTEEREVVRELGHR 157 >gi|258645870|ref|ZP_05733339.1| SsrA-binding protein [Dialister invisus DSM 15470] gi|260403243|gb|EEW96790.1| SsrA-binding protein [Dialister invisus DSM 15470] Length = 156 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P VS NR+A ++Y I ++E GI LTGTEVKS+R +VN+ DS+A + Sbjct: 1 MAAEKNAPP----VSANRQAYHDYFIHETYECGIALTGTEVKSIRAGRVNLRDSFARVQK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N++I Y Q N FNH P R RKLLL K+EI ++ ++ G TLVP+K+YF Sbjct: 57 GEVFLWNAHISPYEQGNIFNHDPLRTRKLLLHKKEILKIENTLKTKGYTLVPLKMYFR-H 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+++ LA GKK YDKR+ ++ R R ++E Sbjct: 116 GKIKVEIGLATGKKLYDKRQDMAAKEAKRDLARRIKE 152 >gi|15894004|ref|NP_347353.1| SsrA-binding protein [Clostridium acetobutylicum ATCC 824] gi|22096170|sp|Q97L49|SSRP_CLOAB RecName: Full=SsrA-binding protein gi|15023597|gb|AAK78693.1|AE007587_1 TmRNA-binding protein SmpB [Clostridium acetobutylicum ATCC 824] gi|325508130|gb|ADZ19766.1| SsrA-binding protein [Clostridium acetobutylicum EA 2018] Length = 155 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K N ++DNRKA ++Y I ++E G+ L GTEVKS++ K N+ DSYA N Sbjct: 1 MAKK---NTENNTLADNRKAWHDYFIEETYECGVELVGTEVKSIKNGKANLKDSYAEIRN 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++ N ++ Y + N FN P R R+LLL K EI +L + G TLVP+ +Y + Sbjct: 58 GEVFACNMHVSPYKEGNIFNVDPLRKRRLLLHKSEIDKLLGFTSQKGYTLVPIALYLKNR 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ LA+A GKKNYDKR+ K++D R+ R ++ + Sbjct: 118 -RVKVKLAVAVGKKNYDKRDALKEKDARREIDRAMKNN 154 >gi|289675996|ref|ZP_06496886.1| SsrA-binding protein [Pseudomonas syringae pv. syringae FF5] gi|330895327|gb|EGH27665.1| SsrA-binding protein [Pseudomonas syringae pv. japonica str. M301072PT] gi|330950333|gb|EGH50593.1| SsrA-binding protein [Pseudomonas syringae Cit 7] gi|330981065|gb|EGH79168.1| SsrA-binding protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 160 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +I + P R RKLLL+KRE+ +L ++V++ G V + +Y+ Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKE 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LVKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156 >gi|291165727|gb|EFE27775.1| SsrA-binding protein [Filifactor alocis ATCC 35896] Length = 152 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + KVV+ NRKAR+NY I+ ++EAGI L GTEVKS+R SKVN+++ + + +N E +L Sbjct: 2 KDSNVKVVAKNRKARFNYEILETYEAGIELKGTEVKSVRASKVNLTEGFISIDNGEAFLK 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y Q N FN P R RKLLL KREI +L + G TLVP+ +Y G K+ Sbjct: 62 QVHISPYEQGNIFNVDPVRVRKLLLHKREIKKLIGETAQKGFTLVPLSMYLK-NGKVKLS 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + LA+GK +DKR+ K+D R R ++ + Sbjct: 121 VGLARGKNIHDKRQDMAKKDAQRSIERAMKNY 152 >gi|315127269|ref|YP_004069272.1| SsrA-binding protein [Pseudoalteromonas sp. SM9913] gi|315015783|gb|ADT69121.1| SsrA-binding protein [Pseudoalteromonas sp. SM9913] Length = 159 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ ++ N+KAR+ Y + FEAGI L G EVKS+R KVNIS++Y +N Sbjct: 1 MAKKNSSKSTSNTIALNKKARHEYFLHDKFEAGIELQGWEVKSIRAGKVNISETYIHLKN 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S I + P R RKLLLS+RE+ RL A RDG +L+ +Y+ Sbjct: 61 GEAFLLGSTIQPLNSASTHVICDPLRYRKLLLSRRELDRLVGATERDGYSLIATAMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K K++ LA+GKK +DKRE K +DW R+K R+++ Sbjct: 120 KCWVKLEFHLAKGKKMHDKREDGKNKDWSREKERLMKHK 158 >gi|261868535|ref|YP_003256457.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413867|gb|ACX83238.1| SsrA-binding protein [Aggregatibacter actinomycetemcomitans D11S-1] Length = 160 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 89/155 (57%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P ++ N++AR++Y I EAG+ L G EVKS+R KVN+SDSY F+N E Sbjct: 3 KKKVKPGSNTIALNKRARHDYFIEDEIEAGLELQGWEVKSMRAGKVNLSDSYVIFKNGEA 62 Query: 64 WLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I + P R RKLLL +RE+ L+ RDG TL+ + + + Sbjct: 63 FLFGATIQPLSVASTHIVCDPTRTRKLLLKQRELDSLFGKANRDGFTLIALSLSWKG-AW 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AK+ + LA+GKK DKRE K+R+W K RI++ Sbjct: 122 AKVKIGLAKGKKQQDKREDIKEREWKVVKERIMKN 156 >gi|149926565|ref|ZP_01914826.1| SsrA-binding protein [Limnobacter sp. MED105] gi|149824928|gb|EDM84142.1| SsrA-binding protein [Limnobacter sp. MED105] Length = 149 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 63/146 (43%), Positives = 93/146 (63%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DN+KA ++Y I +EAGIVL G EVKS+R +V I +S+ N E+WL N +I Sbjct: 3 IIDNKKAGFDYFIEEKYEAGIVLEGWEVKSIRDGRVQIKESHIVVRNGELWLLNCHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N R RKLL+ K+EI RL V + G +LVP+ ++F G K+D+ALA+G Sbjct: 63 TSASTHVNPVNTRTRKLLMHKKEISRLIGKVEQKGYSLVPLNLHFK-NGRVKVDMALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR+T K +DW R++ R+++ H Sbjct: 122 KKQHDKRDTLKDKDWKREQERLMKIH 147 >gi|116618814|ref|YP_819185.1| SsrA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270986|sp|Q03VG0|SSRP_LEUMM RecName: Full=SsrA-binding protein gi|116097661|gb|ABJ62812.1| SsrA-binding protein [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 154 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T N Sbjct: 1 MAKKKQNTENY--LAQNRKARFNYAIAETFEAGISLTGTEIKSVRAGQITIGDGFVTIHN 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 LTN +I Y+Q N+FN P R R+LLL KREI L A + G+T+VP+K+Y Sbjct: 59 GNALLTNVHISSYVQGNQFNVDPLRTRQLLLHKREIRVLEKATQEQGVTIVPLKVYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+ + + +GKK YDKRE KKRD +R+ R + Sbjct: 118 GFAKVLVGIGRGKKKYDKREDIKKRDQERELSRRFKN 154 >gi|257879707|ref|ZP_05659360.1| SmpB protein [Enterococcus faecium 1,230,933] gi|257890371|ref|ZP_05670024.1| SmpB protein [Enterococcus faecium 1,231,410] gi|260559634|ref|ZP_05831814.1| SmpB protein [Enterococcus faecium C68] gi|257813935|gb|EEV42693.1| SmpB protein [Enterococcus faecium 1,230,933] gi|257826731|gb|EEV53357.1| SmpB protein [Enterococcus faecium 1,231,410] gi|260074302|gb|EEW62624.1| SmpB protein [Enterococcus faecium C68] Length = 159 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+ + LA+GKK+YDKRE K++D DRQ R L+ + Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158 >gi|224475926|ref|YP_002633532.1| SsrA-binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254778379|sp|B9DJK4|SSRP_STACT RecName: Full=SsrA-binding protein gi|222420533|emb|CAL27347.1| putative tmRNA-binding protein SmpB [Staphylococcus carnosus subsp. carnosus TM300] Length = 156 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DS+A +N Sbjct: 1 MSKKKKKSPG--TLAENRKARHDYNIEDTIEAGIVLRGTEIKSIRRGSANLKDSFAQVKN 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI++ N +I Y + NRFNH P R RKLLL KREI +L R G +++P+K+Y Sbjct: 59 GEIYVHNMHIAPYEEGNRFNHDPLRPRKLLLHKREIEKLGTRTREIGYSIIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ K+ + +A+GKK YDKR+ K + R R +++ Sbjct: 118 GVCKVLIGVARGKKKYDKRQDLKDKAVKRDMQRAMKDR 155 >gi|296876087|ref|ZP_06900141.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 15912] gi|296432798|gb|EFH18591.1| SsrA-binding protein [Streptococcus parasanguinis ATCC 15912] Length = 155 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 107/148 (72%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTMEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQDPDRRRKLLLHKKQIQKLDQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++++N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKQYN 153 >gi|90407679|ref|ZP_01215859.1| SsrA-binding protein (small protein B) [Psychromonas sp. CNPT3] gi|90311270|gb|EAS39375.1| SsrA-binding protein (small protein B) [Psychromonas sp. CNPT3] Length = 161 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 3/159 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + + ++ N++A + YH+ FEAG+ L G EVKSLR K NI+DSY + Sbjct: 1 MAKKKSKTKNNENTIARNKRASHEYHLEERFEAGLELQGWEVKSLRAGKANIADSYIFLK 60 Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E WL + P + P R RKLLL +RE+ L V R G +++P+ +Y+ Sbjct: 61 NGEAWLLGASFPPLDAACSHVVCEPMRYRKLLLKRRELDNLLGKVDRQGYSIIPISLYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI ALA+GK+ +DKR +K R+W QK R+++ Sbjct: 121 -NAWVKISFALAKGKQAHDKRNADKDREWQVQKERMMKH 158 >gi|307290371|ref|ZP_07570286.1| SsrA-binding protein [Enterococcus faecalis TX0411] gi|306498564|gb|EFM68066.1| SsrA-binding protein [Enterococcus faecalis TX0411] Length = 154 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ RQ R L+ + Sbjct: 126 GKKQYDKREDLKRKEVARQISRTLKNN 152 >gi|284006722|emb|CBA71979.1| SsrA-binding protein (small protein B) [Arsenophonus nasoniae] Length = 160 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 87/158 (55%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N +AR+ Y I EAG+ L G EVK+LR K NISDSY + Sbjct: 1 MTKKKAHKPGSATITLNTRARHEYFINEEIEAGLALQGWEVKALRAGKANISDSYVLLKE 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R RKLLL++RE+ L+ + R+G T V + +Y+ Sbjct: 61 GEAYLFGATITPLNVASSHVVCDPMRTRKLLLNQRELDSLFGKINREGHTAVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 120 NAWCKVKIGVAKGKKEHDKRSDIKEREWKLDKARIMKN 157 >gi|300857051|ref|YP_003782035.1| putative SsrA-binding protein [Clostridium ljungdahlii DSM 13528] gi|300437166|gb|ADK16933.1| predicted SsrA-binding protein [Clostridium ljungdahlii DSM 13528] Length = 157 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 99/159 (62%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K N K +++NRKAR++Y I S EAGI L GTEVKS+R K N+ DSYA N Sbjct: 1 MTNKKSSN---KTLAENRKARHDYFIEESMEAGIELVGTEVKSIRAGKCNLKDSYAEIRN 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI++ N +I Y Q N FN P RNRKLLL K EI +L + G TLVPM +Y Sbjct: 58 GEIFICNMHISPYEQGNIFNKDPLRNRKLLLHKNEIIKLQQYTAQQGYTLVPMSLYLK-Y 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K++LA+A+GKKNYDKR T +R R R ++E + Sbjct: 117 GRVKVNLAVAKGKKNYDKRNTMLERAAKRDIDRQMKERS 155 >gi|257884014|ref|ZP_05663667.1| SmpB protein [Enterococcus faecium 1,231,501] gi|257819852|gb|EEV47000.1| SmpB protein [Enterococcus faecium 1,231,501] Length = 159 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N Sbjct: 1 MEETTMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+ + LA+GKK+YDKRE K++D DRQ R L+ + Sbjct: 120 GYAKVLIGLAKGKKSYDKREDLKRKDIDRQIDRTLKNFS 158 >gi|330468491|ref|YP_004406234.1| SsrA-binding protein [Verrucosispora maris AB-18-032] gi|328811462|gb|AEB45634.1| SsrA-binding protein [Verrucosispora maris AB-18-032] Length = 163 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + + V+ NRKAR++Y I++++EAGIVL GTEVKSLR +V++ D++A + E Sbjct: 1 MSTSRSGERTFVASNRKARHDYTILKTYEAGIVLAGTEVKSLRAGRVSLVDAFAQERDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I L +I EY + NH PRR RKLLL + EI R+ A +R G TLVP+ +YF+ G Sbjct: 61 IMLYGLHIAEYGYGSWTNHAPRRTRKLLLRRVEIDRILAQIREGGFTLVPLSMYFSD-GW 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK++LA+A+G+K+YDKR+ RD DR+ R L Sbjct: 120 AKVELAVAKGRKSYDKRQALAARDADREIARELGRR 155 >gi|239618097|ref|YP_002941419.1| SsrA-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239506928|gb|ACR80415.1| SsrA-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 147 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 72/142 (50%), Positives = 103/142 (72%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ N+KAR+ YHI+ ++EAGI L GTEVKSLR +IS+++ FE+ E++L N+ I Sbjct: 2 KIVATNKKARFQYHILETYEAGIQLLGTEVKSLRNGSASISEAFCKFEDGELFLINANIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y +NH P R RKLL+ KRE+ R+ V+ G+TL+P KIYFN KG+AK+++ALA+ Sbjct: 62 QYSHGTHWNHDPLRKRKLLMHKRELLRIAQKVKERGLTLIPTKIYFNDKGIAKVEIALAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHR 153 GK+ YDKRE KRD +R+ R Sbjct: 122 GKRLYDKREDIAKRDLERRLKR 143 >gi|238059317|ref|ZP_04604026.1| SsrA-binding protein [Micromonospora sp. ATCC 39149] gi|237881128|gb|EEP69956.1| SsrA-binding protein [Micromonospora sp. ATCC 39149] Length = 162 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 + +V+ N+KAR++Y I++++EAG+VL GTEVKSLR V++ D++A + E+ L Sbjct: 5 TGRTLVASNKKARHDYDILKTYEAGLVLAGTEVKSLRAGYVSLVDAFAQEHDGELMLHGL 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY + NH PRR RKLLL + EI R+ VR G+TLVP+ +YF+ G AK++L Sbjct: 65 HIAEYGFGSWTNHQPRRTRKLLLRRIEIDRILDRVREGGLTLVPLSLYFSD-GWAKVELG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+G+++YDKR+ +RD +R+ R L Sbjct: 124 LARGRRSYDKRQALAERDANREIARELGRR 153 >gi|323484419|ref|ZP_08089785.1| hypothetical protein HMPREF9474_01536 [Clostridium symbiosum WAL-14163] gi|323692433|ref|ZP_08106668.1| SsrA-binding protein [Clostridium symbiosum WAL-14673] gi|323402197|gb|EGA94529.1| hypothetical protein HMPREF9474_01536 [Clostridium symbiosum WAL-14163] gi|323503485|gb|EGB19312.1| SsrA-binding protein [Clostridium symbiosum WAL-14673] Length = 154 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 65/153 (42%), Positives = 99/153 (64%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K++++N+KA ++Y I +EAGI L GTEVKSLR+ K +I +S+ EN+++++ Sbjct: 2 GKESVKLIANNKKAYHDYFIDEKYEAGIELFGTEVKSLRMGKCSIKESFIKIENNQVYVY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R+RKLLL K EI +L A ++ G TLVP+++YF L K++ Sbjct: 62 GMHISPYEKGNIFNKDPLRSRKLLLHKLEIRKLQAKIKEKGYTLVPLQVYFKGS-LVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR+ K+D R+ R + N Sbjct: 121 IGLARGKKLYDKRDDIAKKDAKREIEREFKARN 153 >gi|227832562|ref|YP_002834269.1| tmRNA-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|262183569|ref|ZP_06042990.1| SsrA-binding protein [Corynebacterium aurimucosum ATCC 700975] gi|227453578|gb|ACP32331.1| tmRNA-binding protein [Corynebacterium aurimucosum ATCC 700975] Length = 167 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 101/150 (67%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 ++ NR+AR++Y I+ + E G+VL GTE+KS+R K++++D++AT ++ E+++ N Sbjct: 13 DNNSTLATNRRARHDYTILDTLECGMVLVGTEIKSMREGKISLADAFATIDDGEVYIRNL 72 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY Q + NH P+R RKLLL +REI +L VR TL+P+K+Y G AK +L Sbjct: 73 HIPEYSQGSWTNHSPKRTRKLLLHRREIDKLMGQVRDGNKTLIPLKVYLKD-GRAKCELG 131 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK++YDKRE K+RD DR R L Sbjct: 132 LAKGKQDYDKREAIKRRDQDRDITRELGRR 161 >gi|261338112|ref|ZP_05965996.1| SsrA-binding protein [Bifidobacterium gallicum DSM 20093] gi|270276734|gb|EFA22588.1| SsrA-binding protein [Bifidobacterium gallicum DSM 20093] Length = 164 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ KS G +++ N+KAR++Y + +EAGIVLTGTEVKSLR + ++++++ Sbjct: 1 MAKKSSG-VRDGIIAQNKKARHDYALEDEYEAGIVLTGTEVKSLREGRASLAEAFISIDR 59 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EIWL + IPEYL NH P+R RKLLL +I +L + G T+VP+ +YF Sbjct: 60 RGEIWLEGANIPEYLNGTWNNHAPKRKRKLLLHGAQIEKLARQTQAKGYTIVPLSLYFKD 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ +ALA+GKK +DKR+ ++ R+ R++R N Sbjct: 120 -GRVKVKIALARGKKEFDKRQALREEQDKREALRVMRYRN 158 >gi|302386590|ref|YP_003822412.1| SsrA-binding protein [Clostridium saccharolyticum WM1] gi|302197218|gb|ADL04789.1| SsrA-binding protein [Clostridium saccharolyticum WM1] Length = 154 Score = 169 bits (428), Expect = 2e-40, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 95/153 (62%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K++++N+KA ++Y I +EAGI L GTEVKS+R+ K ++ +S+ + E+++ Sbjct: 2 GKESFKLIANNKKAYHDYFIDEKYEAGIELAGTEVKSIRMGKCSVKESFVRIDKGEVYVY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 I Y + N FN P R RKLLL + EI +L A + + G TLVP+++YF L K++ Sbjct: 62 GMNISPYEKGNIFNKDPLRVRKLLLHRTEIGKLDAKIAQKGYTLVPLQVYFKGS-LVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR+ K+D R+ R + N Sbjct: 121 IGLARGKKLYDKRDDIAKKDQKRELERDFKVRN 153 >gi|225570838|ref|ZP_03779861.1| hypothetical protein CLOHYLEM_06942 [Clostridium hylemonae DSM 15053] gi|225160300|gb|EEG72919.1| hypothetical protein CLOHYLEM_06942 [Clostridium hylemonae DSM 15053] Length = 161 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ ++E GI L GTEVKSLR+ K +I +S+ EN E+++ Sbjct: 9 KSNGKMIANNKKAYHDYFILDTYETGIALHGTEVKSLRMGKCSIKESFIRIENGEVYIYG 68 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K EI+++ + G+ +VP+K+YF L K+++ Sbjct: 69 MHISPYEKGNIFNKDPLRVRKLLLHKSEINKMLGKTKEKGIAIVPLKVYFKGS-LVKVEI 127 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR+ K+D R+ R + N Sbjct: 128 GLAKGKKLYDKRQDIAKKDQQREAQRDFKVRN 159 >gi|127512200|ref|YP_001093397.1| SsrA-binding protein [Shewanella loihica PV-4] gi|166223453|sp|A3QCE0|SSRP_SHELP RecName: Full=SsrA-binding protein gi|126637495|gb|ABO23138.1| SsrA-binding protein [Shewanella loihica PV-4] Length = 163 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P ++ N++A ++Y FEAG+ L G EVKS+RV KVN+S+SY + E +L Sbjct: 12 PPATIARNKRANFDYKFEEKFEAGLSLMGWEVKSIRVGKVNLSESYVFLRDGEAYLFGCT 71 Query: 70 IPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I + P R+RKLLL++RE+ +L V R G ++VP+ +Y+ K+++ Sbjct: 72 ITPLNTASTHVVCDPMRDRKLLLNRRELDKLQGLVERQGYSIVPISMYWRKNAWVKLEIG 131 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L +GKK +DKR+ K+R+W +K R ++ Sbjct: 132 LGKGKKEHDKRDDTKEREWKIEKSRTMKH 160 >gi|320095993|ref|ZP_08027606.1| SsrA-binding protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977064|gb|EFW08794.1| SsrA-binding protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 175 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 97/154 (62%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KK V+ N++AR++Y I ++EAG+ L GTEVK+LR+ + ++ DS+ E W Sbjct: 17 KAASDAKKTVARNKRARHDYLIEDTWEAGLSLMGTEVKALRMGRASLVDSWVEVSGGEAW 76 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IP Y Q + NH P R RKLLL + EI R+ + G T+VP+++YF G AK Sbjct: 77 LYGANIPLYAQGSWTNHAPTRKRKLLLHRAEIDRMASKASAKGYTIVPLELYFMG-GRAK 135 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ALA+GK+ +DKR+ +++ R+ R +R + Sbjct: 136 VEIALAKGKQEWDKRQALREKQDQREAERAMRRY 169 >gi|289450836|ref|YP_003475571.1| SsrA-binding protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185383|gb|ADC91808.1| SsrA-binding protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 155 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 74/151 (49%), Positives = 105/151 (69%), Gaps = 1/151 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KVV+DNRKA Y+Y ++ +EAGIVL+GTEVKS+R VN+ DSYA + E+W+ Sbjct: 5 KGIKVVADNRKAHYDYIVLNKYEAGIVLSGTEVKSIRGGNVNLKDSYAKILHGEMWVIGM 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y Q NR+N P R+RKLLL K+EI RL+ ++++G+TLVP+++YF G K++L Sbjct: 65 HISPYEQGNRYNLDPMRSRKLLLHKQEIDRLFGKIKQEGLTLVPLQLYFK-NGRVKLELG 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKKNYDKR++ +R R R L+ N Sbjct: 124 LAKGKKNYDKRQSMIQRTVKRDIDRALKNSN 154 >gi|307718824|ref|YP_003874356.1| SsrA-binding protein [Spirochaeta thermophila DSM 6192] gi|306532549|gb|ADN02083.1| SsrA-binding protein [Spirochaeta thermophila DSM 6192] Length = 153 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ KV+ +N++AR++Y I + E GI L G+EVKS++ +V+ D+Y +N Sbjct: 1 MAKQN----DIKVLGENKRARFDYLIEDTLECGIELKGSEVKSVKEGRVSFGDAYVRVKN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE+WL +I Y A NH P R RKLL EIH+L G TLVP++ Y + Sbjct: 57 DELWLMGLHITPYSHATIENHDPLRPRKLLAHAEEIHQLRRKTEERGYTLVPLRFYVK-R 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K+ + +A+GKK ++KRE K+RD R+ R LR + Sbjct: 116 GLVKVLVGIAKGKKKHEKREAIKERDIKREMDRELRRY 153 >gi|119025485|ref|YP_909330.1| SsrA-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|154486917|ref|ZP_02028324.1| hypothetical protein BIFADO_00750 [Bifidobacterium adolescentis L2-32] gi|166222362|sp|A1A0L5|SSRP_BIFAA RecName: Full=SsrA-binding protein gi|118765069|dbj|BAF39248.1| SsrA-binding protein [Bifidobacterium adolescentis ATCC 15703] gi|154084780|gb|EDN83825.1| hypothetical protein BIFADO_00750 [Bifidobacterium adolescentis L2-32] Length = 159 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+ Sbjct: 1 MAK----EQGTKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDR 56 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL + IPEYL NH P+R RKLLL +I +L + G T++P+ +YF Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAQIDKLARQTQAKGFTIIPLSLYFKD 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+++ALA+GKK +DKR++ ++ R+ R +R N Sbjct: 117 -GRVKVEIALARGKKEFDKRQSLREEQDKREALRAMRYAN 155 >gi|148980252|ref|ZP_01815960.1| SsrA-binding protein [Vibrionales bacterium SWAT-3] gi|145961346|gb|EDK26655.1| SsrA-binding protein [Vibrionales bacterium SWAT-3] Length = 161 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 1 MAKNKSKSKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLREGKTNIAESYVYIR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S++E+ L+ + R+GMTLV +Y++ Sbjct: 61 DGEAFISGMTITPLTQASTHIVANPTRVRKLLMSRKELDNLFGRINREGMTLVATALYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + AKI + +A+GKK +DKR K++DW R K RI++ + Sbjct: 121 -RSWAKIKVGVAKGKKLHDKRTDMKEKDWARDKARIMKSN 159 >gi|257093522|ref|YP_003167163.1| SsrA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046046|gb|ACV35234.1| SsrA-binding protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 148 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 92/146 (63%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72 + N+KA +++ I EAGIVL G EVK++R + +I ++Y + E++L +I P Sbjct: 3 IVANKKAFHDFFIEEKIEAGIVLEGWEVKAIRGGRASIKEAYVVIRSGEVFLFGMHITPL 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL R+I +L V R G TLVP+ ++F +G K+++ LA+G Sbjct: 63 LAASTHVKPDPVRTRKLLLHSRQIGKLIGQVERAGYTLVPLDLHF-QRGRIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE+EK+RDW R+K R++RE Sbjct: 122 KKQFDKRESEKERDWVREKARLMREK 147 >gi|150015523|ref|YP_001307777.1| SsrA-binding protein [Clostridium beijerinckii NCIMB 8052] gi|189046823|sp|A6LR41|SSRP_CLOB8 RecName: Full=SsrA-binding protein gi|149901988|gb|ABR32821.1| SsrA-binding protein [Clostridium beijerinckii NCIMB 8052] Length = 156 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 98/159 (61%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K N +++NRKAR++Y + + EAG+VL GTEVKS+R +VN+ D YA N Sbjct: 1 MARKRNENS----LAENRKARHDYFVEEAMEAGLVLVGTEVKSIRNGRVNLKDCYADIYN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI++ N +I Y Q N FN P R RKLLL + EI RL V RDG TL+P+ +Y Sbjct: 57 GEIFVKNMHISPYEQGNIFNVDPLRERKLLLHRDEIRRLDGLVSRDGYTLIPLSLYLKD- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ L + +GKKNYDKR++ ++ R R ++E N Sbjct: 116 GKVKVALGVCKGKKNYDKRDSMLEKAHKRDMDRAIKEKN 154 >gi|71737867|ref|YP_276334.1| SsrA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482286|ref|ZP_05636327.1| SsrA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289626211|ref|ZP_06459165.1| SsrA-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646938|ref|ZP_06478281.1| SsrA-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|298488432|ref|ZP_07006463.1| SsrA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|123635176|sp|Q48E54|SSRP_PSE14 RecName: Full=SsrA-binding protein gi|71558420|gb|AAZ37631.1| SsrA-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157057|gb|EFH98146.1| SsrA-binding protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320322551|gb|EFW78644.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329980|gb|EFW85967.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330868223|gb|EGH02932.1| SsrA-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330888683|gb|EGH21344.1| SsrA-binding protein [Pseudomonas syringae pv. mori str. 301020] gi|330987032|gb|EGH85135.1| SsrA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011475|gb|EGH91531.1| SsrA-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 160 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 94/159 (59%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL +I + P R RKLLL+KRE+ +L ++V++ G V + +Y+ Sbjct: 59 GEAWLMGCHITPLKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKE 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K ++AL +GKK YDKR TE++RD DR+ R +R Sbjct: 119 H-LIKCEIALGKGKKEYDKRHTERERDSDRELQRAVRSK 156 >gi|227431093|ref|ZP_03913151.1| SsrA-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353133|gb|EEJ43301.1| SsrA-binding protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 154 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T N Sbjct: 1 MAKKKQNTENY--LAQNRKARFNYAIAETFEAGISLTGTEIKSVRAGQITIGDGFVTIHN 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 LTN +I Y+Q N+FN P R R+LLL KREI L A + G+T+VP+K+Y Sbjct: 59 GNALLTNVHISSYMQGNQFNVDPLRTRQLLLHKREIRVLEKATQEQGVTIVPLKVYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+ + + +GKK YDKRE KKRD +R+ R + Sbjct: 118 GFAKVLVGIGRGKKKYDKREDIKKRDQERELSRRFKN 154 >gi|225175330|ref|ZP_03729325.1| SsrA-binding protein [Dethiobacter alkaliphilus AHT 1] gi|225169082|gb|EEG77881.1| SsrA-binding protein [Dethiobacter alkaliphilus AHT 1] Length = 151 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 74/148 (50%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KV + NRKA ++YHI +EAG+VLTGTEVKS+R KVN+ DSYA EN+EI++ N +I Sbjct: 2 DKVFAKNRKAFHDYHIDEKYEAGMVLTGTEVKSIRAGKVNLKDSYARIENNEIFIHNLHI 61 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y Q NRFNH P R RKLL+ +R+I RL + G TL+P+++Y +KG KI++ALA Sbjct: 62 SPYEQGNRFNHEPLRKRKLLMHRRQISRLIGLTKEKGYTLIPLQMY-ASKGFIKIEIALA 120 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR+ ++ R+ R +E Sbjct: 121 RGKKQYDKRQALAAKEAKREVERAFKEK 148 >gi|169826078|ref|YP_001696236.1| SsrA-binding protein [Lysinibacillus sphaericus C3-41] gi|238688202|sp|B1HWE9|SSRP_LYSSC RecName: Full=SsrA-binding protein gi|168990566|gb|ACA38106.1| SsrA-binding protein [Lysinibacillus sphaericus C3-41] Length = 155 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I + EAG+VLTGTE+KS+R K + DSY N E W++N Sbjct: 3 KGSGKVLAQNKKAGHDYFIEDTIEAGMVLTGTEIKSIRAGKAQLKDSYVRITNGEAWISN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 ++ + Q NRFNH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ + Sbjct: 63 MHVSPFDQGNRFNHDPLRARKLLLHKKQIGELVGAVKRDGYTIVPLKMYIKD-GYAKLLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + +GKK+YDKR +K++ R+ R + N Sbjct: 122 GVGKGKKDYDKRNDMRKKEAKREMERTFKSKN 153 >gi|254506717|ref|ZP_05118857.1| SsrA-binding protein [Vibrio parahaemolyticus 16] gi|219550298|gb|EED27283.1| SsrA-binding protein [Vibrio parahaemolyticus 16] Length = 161 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANIAESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|291522314|emb|CBK80607.1| SsrA-binding protein [Coprococcus catus GD/7] Length = 154 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K++++N+KA ++Y I +EAGIVL GTEVKSLR+ K +I +S+ ++ EI++ + Sbjct: 4 KGTKLIANNKKAYHDYFIEDKYEAGIVLHGTEVKSLRMGKCSIKESFIHADHGEIYIEHM 63 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y + N FN P R RKLLL KREI +L V + G T++P+++YF L K+ + Sbjct: 64 HIAPYEKGNIFNKDPLRTRKLLLHKREITKLLGQVSQKGYTIMPLQVYFKDS-LVKVQIG 122 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK YDKRE K+D R+ R ++ Sbjct: 123 LARGKKLYDKREDIAKKDQRREAEREMKIR 152 >gi|327539721|gb|EGF26327.1| SsrA-binding protein [Rhodopirellula baltica WH47] Length = 210 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 95/152 (62%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 P V++NRKA++ Y I+ S E G++L G+EVKS+R K+++ +++ N E+WL Sbjct: 59 NQPNTTPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 118 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 S I Y A +NH PRR RKLL+ +E + G+TL+P+++YF+ +GLAK Sbjct: 119 GSDIAHYNNAGMWNHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKCV 178 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +GKK +DKRET KKR+ DR R +R Sbjct: 179 MGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 210 >gi|319957115|ref|YP_004168378.1| ssra-binding protein [Nitratifractor salsuginis DSM 16511] gi|319419519|gb|ADV46629.1| SsrA-binding protein [Nitratifractor salsuginis DSM 16511] Length = 153 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR+ Y I+ +EAGI L G+EVK+LR +VNI+D+Y F E+WL N++I Sbjct: 4 KIIAQNKKARHEYEILEKYEAGIELQGSEVKALRQGRVNINDAYCRFIKGELWLLNAHIG 63 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 AN F R RKLLL K+++H LY V R+G+T+VP+ +YFN + AK+ +ALA Sbjct: 64 HLDTANRHFARDERAPRKLLLHKKQLHSLYGKVSREGLTIVPLMLYFNERNRAKLSIALA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKRET K+R +R+ + ++ + Sbjct: 124 KGKKLHDKRETLKRRTMEREAAQAMKNRD 152 >gi|283783518|ref|YP_003374272.1| SsrA-binding protein [Gardnerella vaginalis 409-05] gi|297243835|ref|ZP_06927765.1| tmRNA-binding protein [Gardnerella vaginalis AMD] gi|298252595|ref|ZP_06976389.1| tmRNA-binding protein [Gardnerella vaginalis 5-1] gi|283441324|gb|ADB13790.1| SsrA-binding protein [Gardnerella vaginalis 409-05] gi|296888256|gb|EFH26998.1| tmRNA-binding protein [Gardnerella vaginalis AMD] gi|297532959|gb|EFH71843.1| tmRNA-binding protein [Gardnerella vaginalis 5-1] Length = 165 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 94/160 (58%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ K + V+ NRKA ++Y I +EAG+ LTGTEVKSLR + ++++S+ Sbjct: 1 MANKPAQD-GTVTVAQNRKAHHDYVIEDCYEAGLALTGTEVKSLREGRASLAESFVNIDR 59 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL + IPEYL NH P+R RKLLL EI +L G T+VP+++YF Sbjct: 60 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAEIAKLSRQTEAKGYTVVPLRLYFKG 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 120 S-YVKVEIALARGKKEFDKRQALREEQDKREALREMRYRN 158 >gi|160945464|ref|ZP_02092690.1| hypothetical protein FAEPRAM212_02989 [Faecalibacterium prausnitzii M21/2] gi|158443195|gb|EDP20200.1| hypothetical protein FAEPRAM212_02989 [Faecalibacterium prausnitzii M21/2] gi|295105375|emb|CBL02919.1| SsrA-binding protein [Faecalibacterium prausnitzii SL3/3] Length = 160 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 88/153 (57%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + P K ++ NR+AR+ Y ++ + E G+ L GTEVKSLR VN+ DS+ EN E+ + Sbjct: 5 KERPATKSIATNREARHEYFVLEALETGVELKGTEVKSLRAGGVNLKDSWVDIENGELLV 64 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +I Y N FN P R R+LL K EI RL+ + G TLVP+ +YF G K+ Sbjct: 65 KGMHISPYDHGNLFNQDPMRVRRLLAHKSEIRRLHQQCKLQGYTLVPLSLYFK-HGRVKM 123 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++ L +GKK YDKR +RD R R ++ + Sbjct: 124 EVGLCKGKKLYDKRADAAQRDAKRSIDRAVKSN 156 >gi|16801604|ref|NP_471872.1| SsrA-binding protein [Listeria innocua Clip11262] gi|16804486|ref|NP_465971.1| SsrA-binding protein [Listeria monocytogenes EGD-e] gi|46908621|ref|YP_015010.1| SsrA-binding protein [Listeria monocytogenes str. 4b F2365] gi|47093650|ref|ZP_00231406.1| SsrA-binding protein [Listeria monocytogenes str. 4b H7858] gi|47096835|ref|ZP_00234416.1| SsrA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|116873812|ref|YP_850593.1| SsrA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217963450|ref|YP_002349128.1| SsrA-binding protein [Listeria monocytogenes HCC23] gi|224500110|ref|ZP_03668459.1| SsrA-binding protein [Listeria monocytogenes Finland 1988] gi|224503406|ref|ZP_03671713.1| SsrA-binding protein [Listeria monocytogenes FSL R2-561] gi|226224996|ref|YP_002759103.1| hypothetical protein Lm4b_02417 [Listeria monocytogenes Clip81459] gi|254825430|ref|ZP_05230431.1| SsrA-binding protein [Listeria monocytogenes FSL J1-194] gi|254828023|ref|ZP_05232710.1| smpB [Listeria monocytogenes FSL N3-165] gi|254831129|ref|ZP_05235784.1| SsrA-binding protein [Listeria monocytogenes 10403S] gi|254853549|ref|ZP_05242897.1| SsrA-binding protein [Listeria monocytogenes FSL R2-503] gi|254900414|ref|ZP_05260338.1| SsrA-binding protein [Listeria monocytogenes J0161] gi|254913347|ref|ZP_05263359.1| SsrA-binding protein [Listeria monocytogenes J2818] gi|254933126|ref|ZP_05266485.1| SsrA-binding protein [Listeria monocytogenes HPB2262] gi|254937728|ref|ZP_05269425.1| SsrA-binding protein [Listeria monocytogenes F6900] gi|254993185|ref|ZP_05275375.1| SsrA-binding protein [Listeria monocytogenes FSL J2-064] gi|255017266|ref|ZP_05289392.1| SsrA-binding protein [Listeria monocytogenes FSL F2-515] gi|255027029|ref|ZP_05299015.1| SsrA-binding protein [Listeria monocytogenes FSL J2-003] gi|255028117|ref|ZP_05300068.1| SsrA-binding protein [Listeria monocytogenes LO28] gi|255520585|ref|ZP_05387822.1| SsrA-binding protein [Listeria monocytogenes FSL J1-175] gi|284802887|ref|YP_003414752.1| SsrA-binding protein [Listeria monocytogenes 08-5578] gi|284996028|ref|YP_003417796.1| SsrA-binding protein [Listeria monocytogenes 08-5923] gi|289435708|ref|YP_003465580.1| SsrA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290893674|ref|ZP_06556655.1| SsrA-binding protein [Listeria monocytogenes FSL J2-071] gi|300765223|ref|ZP_07075208.1| SsrA-binding protein [Listeria monocytogenes FSL N1-017] gi|315283560|ref|ZP_07871718.1| SsrA-binding protein [Listeria marthii FSL S4-120] gi|54039640|sp|P66861|SSRP_LISIN RecName: Full=SsrA-binding protein gi|54042227|sp|P66860|SSRP_LISMO RecName: Full=SsrA-binding protein gi|61216553|sp|Q71WX8|SSRP_LISMF RecName: Full=SsrA-binding protein gi|123464150|sp|A0ALD2|SSRP_LISW6 RecName: Full=SsrA-binding protein gi|254778365|sp|B8DDA8|SSRP_LISMH RecName: Full=SsrA-binding protein gi|259511425|sp|C1KY87|SSRP_LISMC RecName: Full=SsrA-binding protein gi|16411936|emb|CAD00526.1| lmo2448 [Listeria monocytogenes EGD-e] gi|16415064|emb|CAC97769.1| lin2542 [Listeria innocua Clip11262] gi|46881893|gb|AAT05187.1| SsrA-binding protein [Listeria monocytogenes serotype 4b str. F2365] gi|47014812|gb|EAL05764.1| SsrA-binding protein [Listeria monocytogenes str. 1/2a F6854] gi|47017985|gb|EAL08762.1| SsrA-binding protein [Listeria monocytogenes str. 4b H7858] gi|116742690|emb|CAK21814.1| SsrA-binding protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|217332720|gb|ACK38514.1| SsrA-binding protein [Listeria monocytogenes HCC23] gi|225877458|emb|CAS06172.1| unnamed protein product [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600407|gb|EEW13732.1| smpB [Listeria monocytogenes FSL N3-165] gi|258606922|gb|EEW19530.1| SsrA-binding protein [Listeria monocytogenes FSL R2-503] gi|258610331|gb|EEW22939.1| SsrA-binding protein [Listeria monocytogenes F6900] gi|284058449|gb|ADB69390.1| SsrA-binding protein [Listeria monocytogenes 08-5578] gi|284061495|gb|ADB72434.1| SsrA-binding protein [Listeria monocytogenes 08-5923] gi|289171952|emb|CBH28498.1| SsrA-binding protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|290556747|gb|EFD90280.1| SsrA-binding protein [Listeria monocytogenes FSL J2-071] gi|293584684|gb|EFF96716.1| SsrA-binding protein [Listeria monocytogenes HPB2262] gi|293591352|gb|EFF99686.1| SsrA-binding protein [Listeria monocytogenes J2818] gi|293594673|gb|EFG02434.1| SsrA-binding protein [Listeria monocytogenes FSL J1-194] gi|300514044|gb|EFK41106.1| SsrA-binding protein [Listeria monocytogenes FSL N1-017] gi|307571976|emb|CAR85155.1| SsrA-binding protein [Listeria monocytogenes L99] gi|313606980|gb|EFR83548.1| SsrA-binding protein [Listeria monocytogenes FSL F2-208] gi|313612790|gb|EFR86774.1| SsrA-binding protein [Listeria marthii FSL S4-120] gi|313617317|gb|EFR89752.1| SsrA-binding protein [Listeria innocua FSL S4-378] gi|313632053|gb|EFR99153.1| SsrA-binding protein [Listeria seeligeri FSL N1-067] gi|313636431|gb|EFS02189.1| SsrA-binding protein [Listeria seeligeri FSL S4-171] gi|328465313|gb|EGF36570.1| SsrA-binding protein [Listeria monocytogenes 1816] gi|328471363|gb|EGF42260.1| SsrA-binding protein [Listeria monocytogenes 220] Length = 154 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ N+KAR++Y I +FEAGIVL GTE+KS+R ++VN+ DSYA + EI+L N +I Sbjct: 7 KLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIDKGEIFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL K++I RL + G ++VP+K+Y G AK+ + +A+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKD-GYAKVLIGVAR 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR+ K+++ R R +E Sbjct: 126 GKKKYDKRQDLKQKEAKRDIERAFKER 152 >gi|319650505|ref|ZP_08004645.1| SsrA-binding protein [Bacillus sp. 2_A_57_CT2] gi|317397686|gb|EFV78384.1| SsrA-binding protein [Bacillus sp. 2_A_57_CT2] Length = 155 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DSYA +N+EI+L ++ Sbjct: 7 KMVAQNKKAYHDYAIEETYEAGIVLQGTEIKSIRAGKVNLKDSYARIQNNEIYLFGMHVS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL ++EI +L + G ++VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKEISKLIGESKEVGYSIVPLKMYLK-NGYAKVLIGLAR 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE KK++ R+ R RE Sbjct: 126 GKKKYDKREDLKKKEAKREVERAFRER 152 >gi|114565846|ref|YP_753000.1| SsrA-binding protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122319016|sp|Q0B075|SSRP_SYNWW RecName: Full=SsrA-binding protein gi|114336781|gb|ABI67629.1| SsrA-binding protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 157 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 85/159 (53%), Positives = 107/159 (67%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + K V DNR+ARY YHI + EAG+VL GTEVKSLR+ K N+ D+YA ++ Sbjct: 1 MGKKGK---GIKPVVDNRRARYEYHIKENLEAGLVLVGTEVKSLRMGKANLRDAYAVVKD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EIW+ N +I Y + N+FNH P R +KLLL +REI+RLYA R G+TL+P+KIYF Sbjct: 58 GEIWVNNFHISPYDKGNQFNHDPLRPKKLLLHRREINRLYALQREKGLTLIPLKIYFKE- 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+DLA+A GKK YDKRE RD R R L+E N Sbjct: 117 GRAKMDLAVAVGKKLYDKREDIASRDAWRDMERSLKERN 155 >gi|38233356|ref|NP_939123.1| SsrA-binding protein [Corynebacterium diphtheriae NCTC 13129] gi|61216545|sp|Q6NIL8|SSRP_CORDI RecName: Full=SsrA-binding protein gi|38199616|emb|CAE49272.1| SsrA-binding protein [Corynebacterium diphtheriae] Length = 163 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + V++ NRKAR++Y I+ +FE GIVL GTE+KS+R KV+++DS+AT + Sbjct: 1 MAKKKKAKNSNPVIASNRKARHDYKILDTFECGIVLLGTEIKSIREGKVSLTDSFATIDE 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E W+ N IP Y + + NH P R RKLLL +REI L VR TLVP+ +YF Sbjct: 61 GEAWIRNLNIPIYSRGSWTNHSPMRTRKLLLHRREIDSLMGKVRDGNKTLVPLSLYFKE- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++L LAQGK++YDKR+ K+R +R+ R L Sbjct: 120 GRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRDLGRR 157 >gi|312109558|ref|YP_003987874.1| SsrA-binding protein [Geobacillus sp. Y4.1MC1] gi|311214659|gb|ADP73263.1| SsrA-binding protein [Geobacillus sp. Y4.1MC1] Length = 155 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DS+A E E++L N +I Sbjct: 7 KLIAQNKKAHHDYFIEETYEAGIVLKGTEIKSIRAGKVNLKDSFAKVEKGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK+ L + + Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPIKLYIK-NGFAKVLLGVGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ R+ R RE Sbjct: 126 GKKKYDKREDMKRKEAQREIERAFRER 152 >gi|319790654|ref|YP_004152287.1| SsrA-binding protein [Thermovibrio ammonificans HB-1] gi|317115156|gb|ADU97646.1| SsrA-binding protein [Thermovibrio ammonificans HB-1] Length = 153 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 71/144 (49%), Positives = 98/144 (68%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA Y+Y I+ +EAGI L GTEVKSLR K N+ DS+ EN E +L N+YI Y Sbjct: 9 IKNKKAFYDYDILERYEAGIELKGTEVKSLREGKANLRDSFVRIENGEAFLFNAYIAPYT 68 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 N FNH P R R+LLL KREI RL V G+T+VP++IYFN +G AK+++AL +G+K Sbjct: 69 HGNLFNHEPTRKRRLLLHKREIKRLAGKVAEKGLTIVPLRIYFNERGKAKVEIALVKGRK 128 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKRE K+R+ +R+ + ++ + Sbjct: 129 KYDKREAIKRRELEREAQKAMKFY 152 >gi|229062767|ref|ZP_04200072.1| hypothetical protein bcere0026_48290 [Bacillus cereus AH603] gi|229169828|ref|ZP_04297525.1| hypothetical protein bcere0007_47690 [Bacillus cereus AH621] gi|228613678|gb|EEK70806.1| hypothetical protein bcere0007_47690 [Bacillus cereus AH621] gi|228716527|gb|EEL68230.1| hypothetical protein bcere0026_48290 [Bacillus cereus AH603] Length = 164 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 16 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 75 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L + G L+P++IY G AK+ L LA+ Sbjct: 76 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGYAKETGYALIPVRIYLK-NGFAKMALGLAK 134 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R+ R+ Sbjct: 135 GKKQYDKRHDLKEKEAKREIARVFRDR 161 >gi|256848061|ref|ZP_05553505.1| SsrA-binding protein [Lactobacillus coleohominis 101-4-CHN] gi|256715121|gb|EEU30098.1| SsrA-binding protein [Lactobacillus coleohominis 101-4-CHN] Length = 157 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P +V+ N+KAR++Y ++ ++EAG+VLTGTE+KS+R ++N+ D YA F N Sbjct: 1 MAGKKHQAPNDNLVAQNKKARHDYAVMATYEAGMVLTGTEIKSVRARRINLKDGYAQFHN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N +I EY FNH P RNRKLLL K+E+ +L + G+TL+P+K+Y Sbjct: 61 GELWLMNVHISEYSNGTIFNHDPLRNRKLLLHKKELKKLAGEMSAKGVTLIPLKVYLK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L LA+GK YDKR KKR+ +RQ R+++ + Sbjct: 120 GFAKVLLGLAKGKHEYDKRNDIKKREQERQIERVMKHY 157 >gi|269962385|ref|ZP_06176735.1| SsrA-binding protein [Vibrio harveyi 1DA3] gi|269832881|gb|EEZ86990.1| SsrA-binding protein [Vibrio harveyi 1DA3] Length = 161 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 KS+ ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY + Sbjct: 3 KKKSKQKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKALRQGKANIAESYVFMRDG 62 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ + Sbjct: 63 EAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS-R 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 KI + +A+GKK +DKR K++DW R+K R+++ Sbjct: 122 SWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|254455792|ref|ZP_05069221.1| SsrA-binding protein [Candidatus Pelagibacter sp. HTCC7211] gi|207082794|gb|EDZ60220.1| SsrA-binding protein [Candidatus Pelagibacter sp. HTCC7211] Length = 156 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 78/155 (50%), Positives = 110/155 (70%), Gaps = 1/155 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + N K++ NRKA +NY EAGIVL G+E+KS+R KVNI++SYA +N E Sbjct: 1 MNKKTNSGLKIICLNRKASFNYFFEDLLEAGIVLKGSEIKSIRDGKVNIAESYAVEKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 + L N++I +Y QA+ +H P RKLLL+KREI++L ++RDG T+VP K+YF KG Sbjct: 61 LILINAHIAQYKQASYSSHNPTDERKLLLNKREINKLIGKMQRDGFTIVPTKMYFK-KGK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AKI+LA+A+GKK +DKR T+K RDW+R K R +R+ Sbjct: 120 AKIELAVAKGKKQFDKRATKKNRDWNRDKARYIRK 154 >gi|295401517|ref|ZP_06811486.1| SsrA-binding protein [Geobacillus thermoglucosidasius C56-YS93] gi|294976429|gb|EFG52038.1| SsrA-binding protein [Geobacillus thermoglucosidasius C56-YS93] Length = 155 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 70/151 (46%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+++ N+KA ++Y I ++EAGIVL GTE+KS+R KVN+ DS+A E E++L N Sbjct: 3 KDEGKLIAQNKKAHHDYFIEETYEAGIVLKGTEIKSIRAGKVNLKDSFAKVEKGEVFLHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q NR+NH P R RKLLL +REI++L + G TLVP+K+Y G AK+ L Sbjct: 63 MHISPYEQGNRYNHDPLRTRKLLLHRREINKLIGYTKEQGYTLVPIKLYIK-NGFAKVLL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +GKK YDKRE K+++ R+ R RE Sbjct: 122 GVGKGKKKYDKREDMKRKEAQREIERAFRER 152 >gi|32473366|ref|NP_866360.1| SsrA-binding protein [Rhodopirellula baltica SH 1] gi|32398046|emb|CAD78141.1| ssrA-binding protein [Rhodopirellula baltica SH 1] Length = 210 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 95/152 (62%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 P V++NRKA++ Y I+ S E G++L G+EVKS+R K+++ +++ N E+WL Sbjct: 59 NQPNITPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 118 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 S I Y A +NH PRR RKLL+ +E + G+TL+P+++YF+ +GLAK Sbjct: 119 GSDIAHYNNAGMWNHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKCV 178 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +GKK +DKRET KKR+ DR R +R Sbjct: 179 MGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 210 >gi|227552052|ref|ZP_03982101.1| SsrA-binding protein SmpB [Enterococcus faecium TX1330] gi|293378225|ref|ZP_06624394.1| SsrA-binding protein [Enterococcus faecium PC4.1] gi|293556423|ref|ZP_06675004.1| SsrA-binding protein [Enterococcus faecium E1039] gi|293572432|ref|ZP_06683412.1| SsrA-binding protein [Enterococcus faecium E980] gi|294617574|ref|ZP_06697204.1| SsrA-binding protein [Enterococcus faecium E1679] gi|294623197|ref|ZP_06702075.1| SsrA-binding protein [Enterococcus faecium U0317] gi|227178805|gb|EEI59777.1| SsrA-binding protein SmpB [Enterococcus faecium TX1330] gi|291596180|gb|EFF27443.1| SsrA-binding protein [Enterococcus faecium E1679] gi|291597392|gb|EFF28565.1| SsrA-binding protein [Enterococcus faecium U0317] gi|291601490|gb|EFF31761.1| SsrA-binding protein [Enterococcus faecium E1039] gi|291607494|gb|EFF36836.1| SsrA-binding protein [Enterococcus faecium E980] gi|292643089|gb|EFF61230.1| SsrA-binding protein [Enterococcus faecium PC4.1] Length = 154 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRNGEAFLHNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITVVPLKVYIR-NGYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK+YDKRE K++D DRQ R L+ + Sbjct: 126 GKKSYDKREDLKRKDIDRQIDRTLKNFS 153 >gi|313891891|ref|ZP_07825493.1| SsrA-binding protein [Dialister microaerophilus UPII 345-E] gi|313119666|gb|EFR42856.1| SsrA-binding protein [Dialister microaerophilus UPII 345-E] Length = 156 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K P + NRKA ++Y I ++EAGIVLTGTEVKS+R ++NI DSYA E Sbjct: 1 MIKKEFTLPS----AVNRKAYHDYFIHDTYEAGIVLTGTEVKSIRSGRMNIKDSYARIEK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N++I Y Q NRFNH P R RKLL+ K+E+++L ++ G TL+P+KIYFN + Sbjct: 57 GELWLWNAHISPYEQGNRFNHDPLRTRKLLVHKKELNKLEIMMKTKGYTLIPLKIYFN-R 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K + +A GKK +DKR ++ R R L+E N Sbjct: 116 GKIKCLIGVATGKKLHDKRRDIAEKSVKRDLDRRLKERN 154 >gi|256372519|ref|YP_003110343.1| SsrA-binding protein [Acidimicrobium ferrooxidans DSM 10331] gi|256009103|gb|ACU54670.1| SsrA-binding protein [Acidimicrobium ferrooxidans DSM 10331] Length = 171 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 95/157 (60%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 K++ +V++ NR+AR++Y ++ +FEAGIVL G+EVK++R V + D+YA + E Sbjct: 9 AKAQQLGGVRVLAQNRRARHDYDVLETFEAGIVLVGSEVKAVREGHVQLRDAYARIRDGE 68 Query: 63 IWLTNSYIPEYLQANRFNHYPR-RNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L + I Y A F + R RKLLL + EI RL + ++ +TL+P+ +Y G Sbjct: 69 LFLFQAVISPYRHATGFGTHVTDRPRKLLLHRDEIDRLRGRLEQERLTLIPLSLYLRD-G 127 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K++LALA+G+ YDKR RD R+ R+ + Sbjct: 128 LVKVELALAKGRTLYDKRHVLATRDAQREVERLRSRY 164 >gi|303327972|ref|ZP_07358411.1| SsrA-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302861798|gb|EFL84733.1| SsrA-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 151 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 P ++ N+KAR+ Y + EAGI LTG EVKS+R KVN DSY F+ E WL Sbjct: 2 SQKTPPSTIAANKKARHLYELSEFLEAGIALTGPEVKSIRAGKVNFIDSYVEFKRGEAWL 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + ++ Y A P R R+LLL REI +L V + G+T+VP+++Y +G K+ Sbjct: 62 LSLHVAPYANAGYAPQEPDRPRRLLLHAREIAKLAGLVAQKGLTVVPVRVYLK-RGKVKL 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 ++AL +GKK +D R+T K+R +R R L Sbjct: 121 EIALGRGKKLHDHRDTLKRRAEERDLAREL 150 >gi|254518106|ref|ZP_05130162.1| SsrA-binding protein [Clostridium sp. 7_2_43FAA] gi|226911855|gb|EEH97056.1| SsrA-binding protein [Clostridium sp. 7_2_43FAA] Length = 156 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 65/151 (43%), Positives = 88/151 (58%), Gaps = 1/151 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +++NRKAR++Y + + EAGI L GTEVKS+R K N+ +SYA EN EI + Sbjct: 3 RKKNSNTLAENRKARHDYFVEETIEAGIALVGTEVKSIRAGKCNLKESYADVENGEITIK 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y Q N FN P R RKLLL K +I R V + G TLVP+ +Y G K+ Sbjct: 63 GMHISPYEQGNIFNVDPLRERKLLLHKEQISRFAGLVSQQGFTLVPLSLYLKD-GKVKVA 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L L +GKKNYDKR++ ++ R R L+ Sbjct: 122 LGLCRGKKNYDKRDSMLEKAHKRDIERQLKN 152 >gi|160871526|ref|ZP_02061658.1| SsrA-binding protein [Rickettsiella grylli] gi|159120325|gb|EDP45663.1| SsrA-binding protein [Rickettsiella grylli] Length = 158 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + S+ + ++ NR+AR++Y + +S EAG+VL G EVKSLR + +++SY +N E Sbjct: 1 MNSKKALQEATIALNRRARHDYFVEQSTEAGLVLQGWEVKSLRSGRAQLTESYVVIKNGE 60 Query: 63 IWLTNSYIPEYL--QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 WL +I + + R RKLLL++RE+++L + R G TL+ +K+Y+ Sbjct: 61 AWLLGCHITPISTVSTHHSHPDSTRTRKLLLNERELNKLSGCIMRKGYTLIALKLYWK-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 K+++ LA+GK+ +DKR + K++DW R+K R+ R Sbjct: 120 NRVKLEVGLAKGKQAHDKRASLKEKDWKREKLRLGR 155 >gi|260438445|ref|ZP_05792261.1| SsrA-binding protein [Butyrivibrio crossotus DSM 2876] gi|292809034|gb|EFF68239.1| SsrA-binding protein [Butyrivibrio crossotus DSM 2876] Length = 156 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 97/155 (62%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + + K+V++N+KA ++Y I +EAGI L GTEVKS+R+ K +I +SY EN E++ Sbjct: 2 EKKDNGFKLVANNKKAYFDYFIEDKWEAGIALYGTEVKSIRMGKASIKESYIKIENGEVF 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + N +I Y + N FN P R RKLLL K EI+++ G TLVP++IY GL K Sbjct: 62 IYNMHISPYEKGNIFNRDPVRVRKLLLHKAEINKIAGKTAEKGYTLVPLQIYIKD-GLCK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++ L +GKK YDKR++ K+D R+ R + N Sbjct: 121 VEIGLGKGKKLYDKRDSIAKKDVRRENERDFKIKN 155 >gi|190573953|ref|YP_001971798.1| SsrA-binding protein [Stenotrophomonas maltophilia K279a] gi|229559894|sp|B2FMX5|SSRP_STRMK RecName: Full=SsrA-binding protein gi|190011875|emb|CAQ45496.1| putative SsrA-binding protein [Stenotrophomonas maltophilia K279a] Length = 167 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 100/165 (60%), Gaps = 7/165 (4%) Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K++ K ++ N++AR+ YHI FEAG+ L G EVKS+R + NI D+Y Sbjct: 1 MSKNSGKDKAKSATANKTIALNKRARHEYHIEERFEAGLALQGWEVKSIRAGRGNIIDAY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A ++ EI+L + I +Q + RR RKLLL + EI +L V RDG T+VP Sbjct: 61 AYVKHGEIFLIGAQITPLIQASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y++ K K+++ALA+GK+ +DKR+ K RDW +K R++R N Sbjct: 121 MYWS-KNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVMRRGN 164 >gi|319946547|ref|ZP_08020782.1| SsrA-binding protein [Streptococcus australis ATCC 700641] gi|319747293|gb|EFV99551.1| SsrA-binding protein [Streptococcus australis ATCC 700641] Length = 155 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKASHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQDPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++++N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKQYN 153 >gi|254820374|ref|ZP_05225375.1| SsrA-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 169 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 + + G K VV+ NRKAR+NY I+ SFEAG+ L GTEVKSLR + +++D++AT ++ Sbjct: 8 AKAAGGKGGSKQVVATNRKARHNYSIIESFEAGVALQGTEVKSLREGQASLADAFATIDD 67 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N YI EY + NH PRRNRKLLL +++I RL +R + L+P+ +YF+ Sbjct: 68 GEVWLRNLYIAEYQHGSWTNHDPRRNRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE- 126 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GK+ YDKR+ +RD R+ R L Sbjct: 127 GKVKVELALARGKRAYDKRQDMAQRDAQREVVRELGRR 164 >gi|256832105|ref|YP_003160832.1| SsrA-binding protein [Jonesia denitrificans DSM 20603] gi|256685636|gb|ACV08529.1| SsrA-binding protein [Jonesia denitrificans DSM 20603] Length = 176 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 99/155 (63%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEI 63 P ++++++N+KAR++Y I +EAG+VL+GTEVK+LR + ++ D + N E Sbjct: 20 KDSAPRRELIANNKKARHDYLIEDVYEAGLVLSGTEVKALRAGRASLIDGWVSIDHNQEA 79 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL ++I EY NH PRR RKLLL ++E+ RL G T++P+++YF G A Sbjct: 80 WLEGAHISEYSHGTWTNHAPRRKRKLLLHRQELIRLADRSTDKGYTIIPLQLYFLD-GRA 138 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++A+A+GK+ +DKR+ ++R + + HR +R Sbjct: 139 KVEIAVARGKREFDKRQALRERQDNLEAHRAMRHR 173 >gi|317406244|gb|EFV86488.1| SsrA-binding protein [Achromobacter xylosoxidans C54] Length = 155 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + E++L ++ Sbjct: 3 IIDNRKATHDYFIEDRYEAGLVLQGWEVKAIRDGRVQLKESYVIVRDGELFLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+T +++DW R+K RI++ Sbjct: 122 KKLFDKRDTAREKDWQREKERIMKH 146 >gi|115352083|ref|YP_773922.1| SsrA-binding protein [Burkholderia ambifaria AMMD] gi|122322856|sp|Q0BE35|SSRP_BURCM RecName: Full=SsrA-binding protein gi|115282071|gb|ABI87588.1| SsrA-binding protein [Burkholderia ambifaria AMMD] Length = 148 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 66/144 (45%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVVVKNAEIFLIGTHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL + EI +L V + G TLVP+ ++ G K D+ALA+G Sbjct: 63 PEASTHIHPDPVRTRKLLLHREEIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRETEKKR W+R+K RI+R Sbjct: 122 KKLHDKRETEKKRHWEREKARIMR 145 >gi|260776593|ref|ZP_05885488.1| tmRNA-binding protein SmpB [Vibrio coralliilyticus ATCC BAA-450] gi|260607816|gb|EEX34081.1| tmRNA-binding protein SmpB [Vibrio coralliilyticus ATCC BAA-450] Length = 161 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGMELQGWEVKALREGKANIAESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L+ + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLFGRINREGMTLAALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|187934027|ref|YP_001887236.1| SsrA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|188589393|ref|YP_001922179.1| SsrA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|251779935|ref|ZP_04822855.1| SsrA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|238689628|sp|B2UY12|SSRP_CLOBA RecName: Full=SsrA-binding protein gi|238691656|sp|B2TPV9|SSRP_CLOBB RecName: Full=SsrA-binding protein gi|187722180|gb|ACD23401.1| SsrA-binding protein [Clostridium botulinum B str. Eklund 17B] gi|188499674|gb|ACD52810.1| SsrA-binding protein [Clostridium botulinum E3 str. Alaska E43] gi|243084250|gb|EES50140.1| SsrA-binding protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 156 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 99/159 (62%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K N +++NRKAR+ Y I + EAGI L GTEVKS+R + N+ +SYA N Sbjct: 1 MVRKKSSN----TLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI++ + +I Y Q N FN P R +KLLL K EIHRL V RDG TL+P+ +Y A Sbjct: 57 GEIFILSMHISPYEQGNIFNVEPLREKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKA- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ L + +GKK+YDKR++ ++ +R+ R L+E + Sbjct: 116 GKVKVALGICKGKKDYDKRDSMLEKAHNREMQRALKERS 154 >gi|328952479|ref|YP_004369813.1| SsrA-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328452803|gb|AEB08632.1| SsrA-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 153 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K++ NRKA ++Y I EAGIVL G EVKS+R+ KVNI+D +A E++L Sbjct: 2 KKDAVKIICQNRKAYFDYFIDDVIEAGIVLIGPEVKSVRLGKVNINDGFARIHKGEVYLH 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N++I Y ++ P R RKLLL ++EI RL G TL+P+K+YF KI Sbjct: 62 NTHISPYPFTPLDSYDPTRTRKLLLHRQEIKRLIGKTEEKGYTLIPLKLYFRDH-RIKIA 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L LA+GKK YDKRET ++RD +R+ R + Sbjct: 121 LGLAKGKKKYDKRETIRRRDEEREMQRQKKNR 152 >gi|262376640|ref|ZP_06069868.1| SsrA-binding protein [Acinetobacter lwoffii SH145] gi|262308350|gb|EEY89485.1| SsrA-binding protein [Acinetobacter lwoffii SH145] Length = 159 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 4/158 (2%) Query: 1 MSLKS--RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ S ++ N++AR++Y I FEAG+ L G EVKS+R ++ I +SY TF Sbjct: 1 MAKASIVVKKNNGGTIALNKRARHDYFIEEKFEAGLSLKGWEVKSMRAGRMTIVESYITF 60 Query: 59 ENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 +N E +L + + P + R RKLLL++REI +L A+ + G + VP+ Y+ Sbjct: 61 KNGEAFLFGAQVQPLLSASTHVVPEATRTRKLLLNRREIEKLMGAINQKGYSCVPLACYW 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 AK+++AL +GK+ +DKR TEK RDW R K RI Sbjct: 121 KGPH-AKLEIALVKGKQLHDKRATEKDRDWQRDKARIF 157 >gi|257886786|ref|ZP_05666439.1| SmpB protein [Enterococcus faecium 1,141,733] gi|257822840|gb|EEV49772.1| SmpB protein [Enterococcus faecium 1,141,733] Length = 159 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 70/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N Sbjct: 1 MEETAMPKGEGKLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L N +I Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y Sbjct: 61 GEAFLHNVHISPYEQGNIFNHDPLRTRKLLLHKKQIVRLENELKNTGITVVPLKVYIR-N 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+ + LA+GKK+YDKRE K++D DRQ R L+ + Sbjct: 120 GYAKVLIGLAKGKKSYDKREELKRKDIDRQIDRTLKNFS 158 >gi|163942812|ref|YP_001647696.1| SsrA-binding protein [Bacillus weihenstephanensis KBAB4] gi|229014285|ref|ZP_04171404.1| hypothetical protein bmyco0001_46880 [Bacillus mycoides DSM 2048] gi|229135928|ref|ZP_04264690.1| hypothetical protein bcere0014_48060 [Bacillus cereus BDRD-ST196] gi|226706519|sp|A9VQ41|SSRP_BACWK RecName: Full=SsrA-binding protein gi|163865009|gb|ABY46068.1| SsrA-binding protein [Bacillus weihenstephanensis KBAB4] gi|228647541|gb|EEL03614.1| hypothetical protein bcere0014_48060 [Bacillus cereus BDRD-ST196] gi|228746885|gb|EEL96769.1| hypothetical protein bmyco0001_46880 [Bacillus mycoides DSM 2048] Length = 155 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++E G+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEVGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L + G LVP++IY G AK+ L LA+ Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGYAKETGYALVPVRIYLK-NGFAKMALGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++ R+ R+ R+ Sbjct: 126 GKKQYDKRHDLKEKEAKREIARVFRDR 152 >gi|323488675|ref|ZP_08093917.1| SsrA-binding protein [Planococcus donghaensis MPA1U2] gi|323397693|gb|EGA90497.1| SsrA-binding protein [Planococcus donghaensis MPA1U2] Length = 154 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA +++ I + EAGIVL GTE+KS R KV + DS+ N E W++N +I Sbjct: 7 KVIAQNKKAGFDFFIEETIEAGIVLQGTEIKSARNGKVQLKDSFVRIRNGEAWISNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N+FNH P R+RKLLL K++I L A + G ++P+K+Y G AK+ L + + Sbjct: 67 PYDQGNQFNHDPTRSRKLLLHKKQIANLLAHSKVQGSAIIPLKMYLKD-GFAKVLLGVGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKKNYDKRE KK+D R+ R ++E N Sbjct: 126 GKKNYDKREDLKKKDAKREIDRAMKERN 153 >gi|323499779|ref|ZP_08104738.1| SsrA-binding protein [Vibrio sinaloensis DSM 21326] gi|323315020|gb|EGA68072.1| SsrA-binding protein [Vibrio sinaloensis DSM 21326] Length = 161 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY Sbjct: 1 MAKKKSKQKAGSNTIAVNKKARHEYFIDDEIEAGMELQGWEVKALRQGKANIAESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + K+ + +A+GKK +DKR K++DW R+K R+++ Sbjct: 121 -RSWVKMKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|325690763|gb|EGD32764.1| SsrA-binding protein [Streptococcus sanguinis SK115] Length = 155 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRTARINLKDGFAQIKNGEAWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K +I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKNQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R ++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARQMKNFN 153 >gi|239815735|ref|YP_002944645.1| SsrA-binding protein [Variovorax paradoxus S110] gi|239802312|gb|ACS19379.1| SsrA-binding protein [Variovorax paradoxus S110] Length = 158 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 4/160 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++DN+KA YNY FEAGIVL G EVKSLR KV ++D Y + Sbjct: 1 MATKKQDTSSR--IADNKKAAYNYFFEERFEAGIVLEGWEVKSLREGKVQLTDGYVVIRD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+++ I + N R +KLLL K EI RL V + G TLVP+ +++ A Sbjct: 59 GELFVVGLQINPLKSASTHVNPDSIRTKKLLLHKEEIRRLVGKVEQKGYTLVPLNLHWKA 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K ++ALA+GK +DKR+T K R+ R+ R ++ + Sbjct: 119 -GKVKCEIALAKGKAEHDKRDTIKDREGKREVERAMKSRS 157 >gi|325263486|ref|ZP_08130220.1| SsrA-binding protein [Clostridium sp. D5] gi|324031195|gb|EGB92476.1| SsrA-binding protein [Clostridium sp. D5] Length = 154 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 99/152 (65%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KA ++Y I+ +E GIVL GTEVKSLR+ + +I +++ EN E+++ Sbjct: 3 KTEGKLIANNKKAYHDYFILEKYETGIVLHGTEVKSLRMGQCSIKEAFIRIENGEMFIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K EI++L+ ++ G TLVP+++YF+ L KI++ Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHKNEINKLFGKMKEKGNTLVPLRVYFSGS-LVKIEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GKK YDKR+ K+D R+ R + N Sbjct: 122 GLAKGKKLYDKRDDIAKKDQKREAQREFKIRN 153 >gi|260585035|ref|ZP_05852777.1| SsrA-binding protein [Granulicatella elegans ATCC 700633] gi|260157231|gb|EEW92305.1| SsrA-binding protein [Granulicatella elegans ATCC 700633] Length = 154 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KV++ NRKA ++Y I+ + EAG+VLTGTE+KS+R +++N+ D Y +F+N E +L Sbjct: 3 KGTDNKVLAQNRKANHDYTILDTIEAGLVLTGTEIKSVRQARMNLKDGYCSFKNGEAFLV 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I + Q N FNH P R RKLLL K++I L VR+ G T+VP+K+Y G+AK+ Sbjct: 63 GVHISPFEQGNIFNHDPLRTRKLLLHKKQIQMLEQEVRQAGNTVVPLKVYIK-NGVAKLL 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +A+GKKNYDKRE K++D R R L+ + Sbjct: 122 IGIAKGKKNYDKREALKQKDIKRDVQRELKNY 153 >gi|69247782|ref|ZP_00604487.1| SmpB protein [Enterococcus faecium DO] gi|258616683|ref|ZP_05714453.1| SsrA-binding protein [Enterococcus faecium DO] gi|293560035|ref|ZP_06676539.1| SsrA-binding protein [Enterococcus faecium E1162] gi|293568731|ref|ZP_06680046.1| SsrA-binding protein [Enterococcus faecium E1071] gi|314939619|ref|ZP_07846846.1| SsrA-binding protein [Enterococcus faecium TX0133a04] gi|314941245|ref|ZP_07848141.1| SsrA-binding protein [Enterococcus faecium TX0133C] gi|314949822|ref|ZP_07853132.1| SsrA-binding protein [Enterococcus faecium TX0082] gi|314953386|ref|ZP_07856311.1| SsrA-binding protein [Enterococcus faecium TX0133A] gi|314993463|ref|ZP_07858828.1| SsrA-binding protein [Enterococcus faecium TX0133B] gi|314997314|ref|ZP_07862279.1| SsrA-binding protein [Enterococcus faecium TX0133a01] gi|68194711|gb|EAN09193.1| SmpB protein [Enterococcus faecium DO] gi|291588691|gb|EFF20524.1| SsrA-binding protein [Enterococcus faecium E1071] gi|291605902|gb|EFF35332.1| SsrA-binding protein [Enterococcus faecium E1162] gi|313588605|gb|EFR67450.1| SsrA-binding protein [Enterococcus faecium TX0133a01] gi|313592128|gb|EFR70973.1| SsrA-binding protein [Enterococcus faecium TX0133B] gi|313594579|gb|EFR73424.1| SsrA-binding protein [Enterococcus faecium TX0133A] gi|313599969|gb|EFR78812.1| SsrA-binding protein [Enterococcus faecium TX0133C] gi|313641159|gb|EFS05739.1| SsrA-binding protein [Enterococcus faecium TX0133a04] gi|313643895|gb|EFS08475.1| SsrA-binding protein [Enterococcus faecium TX0082] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRNGEAFLHNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-NGYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK+YDKRE K++D DRQ R L+ + Sbjct: 126 GKKSYDKREDLKRKDIDRQIDRTLKNFS 153 >gi|193216001|ref|YP_001997200.1| SsrA-binding protein [Chloroherpeton thalassium ATCC 35110] gi|193089478|gb|ACF14753.1| SsrA-binding protein [Chloroherpeton thalassium ATCC 35110] Length = 150 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 72/149 (48%), Positives = 100/149 (67%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 P NRKAR+ +HI+ + EAGIVL GTEVKS+R+ K +++SYA E++L Sbjct: 2 SKPTYVTSLLNRKARHEFHILDTLEAGIVLKGTEVKSIRLGKAGLNESYAMIHRGEVFLE 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N I Y NH P+R+RKLLL ++EI +L V G+TL+P+K+YFN KG+AKI+ Sbjct: 62 NMQITPYEHGTIENHEPKRSRKLLLHRKEILKLQQKVADSGLTLIPLKLYFNQKGIAKIE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRIL 155 LALA+GKK +DKRE K+RD +R+ R + Sbjct: 122 LALAKGKKLHDKREAIKQRDTERELRRFI 150 >gi|315150001|gb|EFT94017.1| SsrA-binding protein [Enterococcus faecalis TX0012] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ NRKAR++Y I+ + EAG+VL GTE+KS+R ++N+ D +A N E +L N +I Sbjct: 7 KLIAQNRKARHDYSIIDTVEAGLVLQGTEIKSIRNGRINLKDGFARIRNGEAFLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I++L + G+TLVP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQINKLIGETKNTGITLVPLKVYIKD-GYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ DR+ R L+ + Sbjct: 126 GKKQYDKREDLKRKEVDRKISRTLKNN 152 >gi|146319044|ref|YP_001198756.1| SsrA-binding protein [Streptococcus suis 05ZYH33] gi|146321251|ref|YP_001200962.1| SsrA-binding protein [Streptococcus suis 98HAH33] gi|253752107|ref|YP_003025248.1| SsrA-binding protein [Streptococcus suis SC84] gi|253753932|ref|YP_003027073.1| SsrA-binding protein [Streptococcus suis P1/7] gi|253755193|ref|YP_003028333.1| SsrA-binding protein [Streptococcus suis BM407] gi|166223465|sp|A4W2H3|SSRP_STRS2 RecName: Full=SsrA-binding protein gi|166223467|sp|A4VW67|SSRP_STRSY RecName: Full=SsrA-binding protein gi|145689850|gb|ABP90356.1| tmRNA-binding protein [Streptococcus suis 05ZYH33] gi|145692057|gb|ABP92562.1| tmRNA-binding protein [Streptococcus suis 98HAH33] gi|251816396|emb|CAZ52027.1| SsrA-binding protein [Streptococcus suis SC84] gi|251817657|emb|CAZ55405.1| SsrA-binding protein [Streptococcus suis BM407] gi|251820178|emb|CAR46541.1| SsrA-binding protein [Streptococcus suis P1/7] gi|292558690|gb|ADE31691.1| SmpB protein [Streptococcus suis GZ1] gi|319758483|gb|ADV70425.1| SsrA-binding protein [Streptococcus suis JS14] Length = 155 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ N+KAR++Y IV + EAG+VLTGTE+KS+R ++N+ D +A + E WL N +I Sbjct: 7 NVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRINLKDGFAQIKQGEAWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I L V+ GMTLVP+K+Y G AK+ + LA+ Sbjct: 67 PYDEGNIWNQEPTRTRKLLLRKKQIESLDNEVKGTGMTLVPLKVYIKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R ++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIKRTMKAIN 153 >gi|223932656|ref|ZP_03624655.1| SsrA-binding protein [Streptococcus suis 89/1591] gi|302024108|ref|ZP_07249319.1| SsrA-binding protein [Streptococcus suis 05HAS68] gi|330832415|ref|YP_004401240.1| SsrA-binding protein [Streptococcus suis ST3] gi|223898626|gb|EEF64988.1| SsrA-binding protein [Streptococcus suis 89/1591] gi|329306638|gb|AEB81054.1| SsrA-binding protein [Streptococcus suis ST3] Length = 155 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 99/148 (66%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ N+KAR++Y IV + EAG+VLTGTE+KS+R ++N+ D +A + E WL N +I Sbjct: 7 NVIAQNKKARHDYTIVDTVEAGMVLTGTEIKSIRAGRINLKDGFAQIKQGEAWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I L V+ GMTLVP+K+Y G AK+ + LA+ Sbjct: 67 PYDEGNIWNQEPTRTRKLLLRKKQIESLGNEVKGTGMTLVPLKVYIKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R ++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIKRTMKAIN 153 >gi|18310277|ref|NP_562211.1| SsrA-binding protein [Clostridium perfringens str. 13] gi|110800123|ref|YP_695944.1| SsrA-binding protein [Clostridium perfringens ATCC 13124] gi|110801604|ref|YP_698613.1| SsrA-binding protein [Clostridium perfringens SM101] gi|168207559|ref|ZP_02633564.1| SsrA-binding protein [Clostridium perfringens E str. JGS1987] gi|168209587|ref|ZP_02635212.1| SsrA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|168213003|ref|ZP_02638628.1| SsrA-binding protein [Clostridium perfringens CPE str. F4969] gi|168217055|ref|ZP_02642680.1| SsrA-binding protein [Clostridium perfringens NCTC 8239] gi|169344559|ref|ZP_02865527.1| SsrA-binding protein [Clostridium perfringens C str. JGS1495] gi|182624216|ref|ZP_02952002.1| SsrA-binding protein [Clostridium perfringens D str. JGS1721] gi|22096161|sp|Q8XKU7|SSRP_CLOPE RecName: Full=SsrA-binding protein gi|123047401|sp|Q0STE4|SSRP_CLOPS RecName: Full=SsrA-binding protein gi|123344778|sp|Q0TQZ6|SSRP_CLOP1 RecName: Full=SsrA-binding protein gi|18144957|dbj|BAB81001.1| probable SSRA-binding protein [Clostridium perfringens str. 13] gi|110674770|gb|ABG83757.1| SsrA-binding protein [Clostridium perfringens ATCC 13124] gi|110682105|gb|ABG85475.1| SsrA-binding protein [Clostridium perfringens SM101] gi|169297320|gb|EDS79430.1| SsrA-binding protein [Clostridium perfringens C str. JGS1495] gi|170661106|gb|EDT13789.1| SsrA-binding protein [Clostridium perfringens E str. JGS1987] gi|170712205|gb|EDT24387.1| SsrA-binding protein [Clostridium perfringens B str. ATCC 3626] gi|170715442|gb|EDT27624.1| SsrA-binding protein [Clostridium perfringens CPE str. F4969] gi|177910630|gb|EDT72998.1| SsrA-binding protein [Clostridium perfringens D str. JGS1721] gi|182380804|gb|EDT78283.1| SsrA-binding protein [Clostridium perfringens NCTC 8239] Length = 156 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 69/159 (43%), Positives = 99/159 (62%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K +++NRKAR++Y + + EAGI L GTEVKS+R +VN+ D YA N Sbjct: 1 MAKRK----DNKTLAENRKARHDYFVDEAMEAGIALVGTEVKSIRNGRVNLKDCYADINN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI++ N +I Y Q N FN P R RKLLL K EI RL V++ G+ L+P+ +Y Sbjct: 57 GEIFINNMHISPYEQGNIFNVDPLRKRKLLLHKSEIQRLIGIVQQQGVALIPLSLYLK-N 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K++L + +GKKNYDKR+T ++ R+ R L+E N Sbjct: 116 GRVKVNLGVCRGKKNYDKRDTMLEKAHKREMDRQLKERN 154 >gi|22537624|ref|NP_688475.1| SsrA-binding protein [Streptococcus agalactiae 2603V/R] gi|25011589|ref|NP_735984.1| SsrA-binding protein [Streptococcus agalactiae NEM316] gi|76788109|ref|YP_330118.1| SsrA-binding protein [Streptococcus agalactiae A909] gi|76799425|ref|ZP_00781574.1| SsrA-binding protein [Streptococcus agalactiae 18RS21] gi|77405173|ref|ZP_00782271.1| SsrA-binding protein [Streptococcus agalactiae H36B] gi|77408544|ref|ZP_00785280.1| SsrA-binding protein [Streptococcus agalactiae COH1] gi|77411052|ref|ZP_00787406.1| SsrA-binding protein [Streptococcus agalactiae CJB111] gi|77414830|ref|ZP_00790947.1| SsrA-binding protein [Streptococcus agalactiae 515] gi|54039642|sp|P66865|SSRP_STRA5 RecName: Full=SsrA-binding protein gi|54042229|sp|P66864|SSRP_STRA3 RecName: Full=SsrA-binding protein gi|123601498|sp|Q3K035|SSRP_STRA1 RecName: Full=SsrA-binding protein gi|22534510|gb|AAN00348.1|AE014260_4 SsrA-binding protein [Streptococcus agalactiae 2603V/R] gi|24413128|emb|CAD47206.1| Unknown [Streptococcus agalactiae NEM316] gi|76563166|gb|ABA45750.1| SsrA-binding protein [Streptococcus agalactiae A909] gi|76585220|gb|EAO61829.1| SsrA-binding protein [Streptococcus agalactiae 18RS21] gi|77159121|gb|EAO70315.1| SsrA-binding protein [Streptococcus agalactiae 515] gi|77162875|gb|EAO73832.1| SsrA-binding protein [Streptococcus agalactiae CJB111] gi|77172818|gb|EAO75951.1| SsrA-binding protein [Streptococcus agalactiae COH1] gi|77176175|gb|EAO78946.1| SsrA-binding protein [Streptococcus agalactiae H36B] gi|319745437|gb|EFV97743.1| SsrA-binding protein [Streptococcus agalactiae ATCC 13813] Length = 155 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 72/152 (47%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 VV+ N+KA ++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N Sbjct: 3 KGQGNVVAQNKKAHHDYTIVETIEAGIVLTGTEIKSVRAARITLKDGYAQIKNGEAWLIN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y Q N +N P R RKLLL KREI ++ ++ GMTLVP+K+Y G AK+ L Sbjct: 63 VHITPYDQGNIWNQDPDRTRKLLLKKREIEKISNELKGTGMTLVPLKVYLKD-GFAKVLL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 LA+GK +YDKRE+ K+R+ +R R L+ +N Sbjct: 122 GLAKGKHDYDKRESIKRREQNRDIARQLKNYN 153 >gi|54295663|ref|YP_128078.1| SsrA-binding protein [Legionella pneumophila str. Lens] gi|54298831|ref|YP_125200.1| SsrA-binding protein [Legionella pneumophila str. Paris] gi|61216433|sp|Q5WSX5|SSRP_LEGPL RecName: Full=SsrA-binding protein gi|61216436|sp|Q5X148|SSRP_LEGPA RecName: Full=SsrA-binding protein gi|53752616|emb|CAH14051.1| hypothetical protein lpp2898 [Legionella pneumophila str. Paris] gi|53755495|emb|CAH16994.1| hypothetical protein lpl2751 [Legionella pneumophila str. Lens] gi|307611711|emb|CBX01407.1| hypothetical protein LPW_30991 [Legionella pneumophila 130b] Length = 156 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++ NRKA ++Y I +EAG+VL G EVKSLR K+N+SDS+ + Sbjct: 1 MTTKKQPDS---TIALNRKAGFDYFIEDQYEAGLVLEGWEVKSLRAGKINLSDSHVIIKY 57 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + F P R RKLL++K+E++ L +V R G T+VP+ +Y+ Sbjct: 58 GEAFLLGAQIQPLPTASTHFIPDPVRTRKLLMNKKELNHLIGSVERQGYTIVPLSLYWKK 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + ALA+GKK +DKR+T K R+W R + RI++++ Sbjct: 118 NKIKIKI-ALAKGKKEHDKRDTIKDREWQRDRSRIMKKN 155 >gi|241894753|ref|ZP_04782049.1| SsrA-binding protein [Weissella paramesenteroides ATCC 33313] gi|241871965|gb|EER75716.1| SsrA-binding protein [Weissella paramesenteroides ATCC 33313] Length = 156 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 76/158 (48%), Positives = 104/158 (65%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ N KARYNY I ++EAGI LTGTE+KS+R SK+ I D + + Sbjct: 1 MAKKKQRADGA--LATNNKARYNYAIAETYEAGIELTGTEIKSVRASKITIGDGFVQVRD 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 + WL N +I + Q NRFNH P R+R+LLL K+EI L AAV + G T+VP+K+Y Sbjct: 59 GQAWLDNVHISPFEQGNRFNHDPLRSRRLLLHKKEIQVLQAAVAQQGKTIVPLKVYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A GK NYDKRET K+RD DR+ HR L++ Sbjct: 118 GFAKVLIGVATGKHNYDKRETIKRRDQDRELHRTLKKR 155 >gi|307244704|ref|ZP_07526807.1| SsrA-binding protein [Peptostreptococcus stomatis DSM 17678] gi|306491955|gb|EFM64005.1| SsrA-binding protein [Peptostreptococcus stomatis DSM 17678] Length = 151 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KK+++ N+KAR++Y I FE GI L GTEVKS+R +VN+ + YA+ +N E++L Sbjct: 2 SGKKILATNKKARHDYFIDEVFECGIELKGTEVKSIRQGRVNLKEGYASVDNSEVFLKQV 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y Q NRFN P R RKLLL K EI +L A G +LVPM +Y G K++L Sbjct: 62 HISPYDQGNRFNVDPLRTRKLLLHKSEIRKLIGATTVKGYSLVPMSMYLK-NGKVKLELG 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +GKK YDKR+ K+D R+ R ++ Sbjct: 121 LGKGKKLYDKRQDLAKKDAMRRIERESKDR 150 >gi|300173698|ref|YP_003772864.1| SsrA-binding protein [Leuconostoc gasicomitatum LMG 18811] gi|299888077|emb|CBL92045.1| SsrA-binding protein [Leuconostoc gasicomitatum LMG 18811] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 96/157 (61%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ ++ NRKAR+NY I +FEAGI LTGTE+KS+R ++ I D + T N Sbjct: 1 MAKTNKNVGNY--LAQNRKARFNYAIEETFEAGISLTGTEIKSVRAGQITIGDGFITIHN 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 LTN I Y Q N+FN P R R+LLL KREI L A G+T+VP+K+Y Sbjct: 59 GNAILTNVNIAAYTQGNQFNVDPLRPRQLLLHKREIVSLNKAAIEPGVTIVPLKVYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AKI + + +GKK YDKRE KKRD +R+ R L+ Sbjct: 118 GFAKILIGVGRGKKKYDKREDIKKRDQERELGRRLKH 154 >gi|330428256|gb|AEC19590.1| SsrA-binding protein [Pusillimonas sp. T7-7] Length = 155 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R V + +SY + EIW+ N +I Sbjct: 3 IVDNRKATHDYFIEDRYEAGLVLEGWEVKAIRAGHVQLKESYVIVRDGEIWIINMHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL EI +L V + G TLVP+ +++ G K+D L +G Sbjct: 63 PTASTHIHPNSTRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFGLGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+T + +DW+R+K RI++ Sbjct: 122 KKLHDKRDTARDKDWEREKERIMKH 146 >gi|88860467|ref|ZP_01135105.1| SsrA-binding protein [Pseudoalteromonas tunicata D2] gi|88817665|gb|EAR27482.1| SsrA-binding protein [Pseudoalteromonas tunicata D2] Length = 159 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 91/158 (57%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P ++ N+KAR+ Y + FEAG+ L G EVKS+R KVNISD+Y +N Sbjct: 1 MA-NKKSKPGSNTIALNKKARHEYSLGDKFEAGLELQGWEVKSIRAGKVNISDTYIHLKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S I + P R RKLLL KREI RL + RDG TLV +Y+ Sbjct: 60 GEAFLLGSQIQPLNSASTHVICDPYRYRKLLLKKREIDRLVGSTERDGFTLVATAMYWKQ 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K++ LA+GKK +DKRE K++DW R+K R ++ Sbjct: 120 -CWVKLEFHLAKGKKLHDKREDGKEKDWAREKERTMKH 156 >gi|163802494|ref|ZP_02196387.1| SsrA-binding protein [Vibrio sp. AND4] gi|159173795|gb|EDP58610.1| SsrA-binding protein [Vibrio sp. AND4] Length = 161 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 2/156 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY + Sbjct: 3 KKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKSLRQGKANIAESYVFMRDG 62 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ + Sbjct: 63 EAYVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS-R 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 KI + +A+GKK +DKR K++DW R K RI++ Sbjct: 122 SWVKIKIGVAKGKKLHDKRTDMKEKDWARDKARIMK 157 >gi|283851022|ref|ZP_06368307.1| SsrA-binding protein [Desulfovibrio sp. FW1012B] gi|283573668|gb|EFC21643.1| SsrA-binding protein [Desulfovibrio sp. FW1012B] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 92/158 (58%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K +K+++ N+KAR+ Y + +EAG+VL GTEVKSLR ++ D Y F Sbjct: 1 MSAKE---SGEKLIAQNKKARHLYEFIDKYEAGLVLVGTEVKSLRAGHISFKDGYVKFTA 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L +I Y A + H P R RKLLL EI+ L A V + G+T+ P+++YF Sbjct: 58 TEAFLVGVHIAPYENAGQDGHDPERPRKLLLHAAEINTLRAKVEQKGLTVAPVRVYFK-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++AL +GKK +D+R+ K RD R R L H Sbjct: 117 GKVKVEIALCRGKKTFDRRDDLKNRDLARDAARELARH 154 >gi|260773335|ref|ZP_05882251.1| tmRNA-binding protein SmpB [Vibrio metschnikovii CIP 69.14] gi|260612474|gb|EEX37677.1| tmRNA-binding protein SmpB [Vibrio metschnikovii CIP 69.14] Length = 161 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNP-PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M K ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 1 MVKKKSTKKAGSSTIALNKKARHEYFIEDEVEAGLELQGWEVKSLRQGKANIAESYVFLR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLLLS+RE+ L+ + R+GMTL + +Y++ Sbjct: 61 DGEAFISGMTITPLQQASTHVVANPTRVRKLLLSRRELDNLFGRINREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +++GKK +DKR+ K++DW R+K R+++ Sbjct: 121 -RSWVKIKVGVSKGKKLHDKRDDLKEKDWAREKARVMK 157 >gi|154503017|ref|ZP_02040077.1| hypothetical protein RUMGNA_00839 [Ruminococcus gnavus ATCC 29149] gi|153796371|gb|EDN78791.1| hypothetical protein RUMGNA_00839 [Ruminococcus gnavus ATCC 29149] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 103/159 (64%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K K++++N+KA ++Y I+ +EAGIVL GTEVKSLR+ + +I +++ EN Sbjct: 1 MAKKE-----GKLIANNKKAYHDYFILEKYEAGIVLHGTEVKSLRMGQCSIKEAFIRIEN 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ ++ Y + N FN P R RKLLL K+EI +++ ++ G T+VP+++YFN Sbjct: 56 GEMFIYGMHVSPYEKGNIFNKDPLRPRKLLLHKKEIDKIFGKMKEKGNTVVPLQVYFNGS 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ LA+GKK YDKR+ K+D R+ R + N Sbjct: 116 -LVKVEVGLAKGKKLYDKRDDIAKKDQKREAQREFKIRN 153 >gi|194365368|ref|YP_002027978.1| SsrA-binding protein [Stenotrophomonas maltophilia R551-3] gi|238693491|sp|B4SS56|SSRP_STRM5 RecName: Full=SsrA-binding protein gi|194348172|gb|ACF51295.1| SsrA-binding protein [Stenotrophomonas maltophilia R551-3] Length = 167 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 67/165 (40%), Positives = 99/165 (60%), Gaps = 7/165 (4%) Query: 1 MSL-----KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 MS K++ K ++ N++AR+ YHI FEAG+ L G EVKS+R + NI D+Y Sbjct: 1 MSKNSVKDKAKSATANKTIALNKRARHEYHIEERFEAGLALQGWEVKSIRAGRGNIIDAY 60 Query: 56 ATFENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMK 114 A + EI+L + I +Q + RR RKLLL + EI +L V RDG T+VP Sbjct: 61 AYVKQGEIFLIGAQITPLIQASTHVVANDRRERKLLLHRSEIDKLVGKVERDGYTIVPTA 120 Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y++ K K+++ALA+GK+ +DKR+ K RDW +K R++R N Sbjct: 121 MYWS-KNKIKLEVALAKGKQTHDKRDAAKDRDWAIEKQRVMRRGN 164 >gi|332181251|gb|AEE16939.1| SsrA-binding protein [Treponema brennaborense DSM 12168] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + +K+++ NRKAR+NY I S E GIVL GTEVKS++ ++ D++A +N E+W+ Sbjct: 2 SEGRKLIAQNRKARFNYSIEDSIECGIVLEGTEVKSVKAGNISFPDAFAEIQNGEVWVKG 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I EY ++ FNH P R +KLLL K EI RL + G TL+P+ Y G K++L Sbjct: 62 LHIAEYAFSSVFNHDPDRPKKLLLHKDEIKRLIRKIDEKGFTLIPLDFYLKD-GRVKVNL 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + +GKK +DKR + RD R R R+ Sbjct: 121 GVCRGKKQFDKRADIRDRDVKRDMQREFRK 150 >gi|315641273|ref|ZP_07896350.1| SsrA-binding protein [Enterococcus italicus DSM 15952] gi|315483040|gb|EFU73559.1| SsrA-binding protein [Enterococcus italicus DSM 15952] Length = 152 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N E +L N +I Sbjct: 7 KLIAQNKKARHDYSILETIEAGVVLQGTEIKSVRDSRINLKDGFVRIRNGEAYLYNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I +L + G T+VP+K+Y G AK+ + LA+ Sbjct: 67 PYDQGNIFNHDPLRTRKLLLHKKQIQKLANEAKNPGTTIVPLKVYIKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK+ YDKRET K++D +RQ R+L+ Sbjct: 126 GKREYDKRETLKRKDQERQISRVLKNF 152 >gi|153833551|ref|ZP_01986218.1| SsrA-binding protein [Vibrio harveyi HY01] gi|156973434|ref|YP_001444341.1| SsrA-binding protein [Vibrio harveyi ATCC BAA-1116] gi|166223473|sp|A7MWX4|SSRP_VIBHB RecName: Full=SsrA-binding protein gi|148870202|gb|EDL69143.1| SsrA-binding protein [Vibrio harveyi HY01] gi|156525028|gb|ABU70114.1| hypothetical protein VIBHAR_01124 [Vibrio harveyi ATCC BAA-1116] Length = 161 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 2/156 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 KS+ ++ N+KAR+ Y I EAG+ L G EVK+LR K NI++SY + Sbjct: 3 KKKSKQKAGSNTIALNKKARHEYFIDDEIEAGMELQGWEVKALRQGKANIAESYVFMRDG 62 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y++ + Sbjct: 63 EAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYWS-R 121 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 KI + +A+GKK +DKR K++DW R+K R+++ Sbjct: 122 SWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 157 >gi|299821976|ref|ZP_07053864.1| SsrA-binding protein [Listeria grayi DSM 20601] gi|299817641|gb|EFI84877.1| SsrA-binding protein [Listeria grayi DSM 20601] Length = 154 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR+++ I +FEAGIVL GTE+KS+R ++VN+ DSYA E EI+L N +I Sbjct: 7 KLIAQNKKARHDFAIEETFEAGIVLQGTEIKSVRNARVNLKDSYARIERGEIFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K++I RL + G ++VP+K+Y G AK+ + +A+ Sbjct: 67 PYDQGNRFNHDPLRTRKLLLHKKQISRLIGETKEAGYSIVPLKLYIKD-GFAKVLIGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ R R +E Sbjct: 126 GKKKYDKREDLKRKEAKRDIERAFKER 152 >gi|229821247|ref|YP_002882773.1| SsrA-binding protein [Beutenbergia cavernae DSM 12333] gi|229567160|gb|ACQ81011.1| SsrA-binding protein [Beutenbergia cavernae DSM 12333] Length = 177 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 62/152 (40%), Positives = 99/152 (65%), Gaps = 1/152 (0%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K K VV+ N++AR++YH+ ++EAG+ LTGTEVK+LR + +++D + + + E Sbjct: 21 KRDKKTEKVVVARNKRARHDYHVDDTYEAGLSLTGTEVKALRAGRASLADGWVSIDGGEA 80 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL + +IPEY Q NH PRR RKLLL + EI +L R G T++P+++YF G A Sbjct: 81 WLESVHIPEYTQGTWTNHAPRRKRKLLLHREEIDKLAGKAREKGYTVIPLELYFLG-GRA 139 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K+++ LA+GK+ +DKR+T + + R+ R + Sbjct: 140 KVEIGLARGKQEWDKRQTLRAKQDLREAQRAM 171 >gi|325982585|ref|YP_004294987.1| SsrA-binding protein [Nitrosomonas sp. AL212] gi|325532104|gb|ADZ26825.1| SsrA-binding protein [Nitrosomonas sp. AL212] Length = 147 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA ++Y I +EAG+ L G EVKS+R +V + ++Y N ++L S+I Sbjct: 3 IVQNKKAFHDYFIEEKYEAGLALEGWEVKSIRDGRVQLKEAYVIIRNSALYLIGSHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R RKLLL +I RL V R G TLVP+ +++ G K+++ LA+G Sbjct: 63 KTASTHINPDPVRTRKLLLHSEQIRRLIGKVERAGYTLVPLDMHYKT-GRIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE+EK+++W+R K R++R+ Sbjct: 122 KKQHDKRESEKQKEWERTKQRLMRDK 147 >gi|325265614|ref|ZP_08132304.1| SsrA-binding protein [Kingella denitrificans ATCC 33394] gi|324982884|gb|EGC18506.1| SsrA-binding protein [Kingella denitrificans ATCC 33394] Length = 196 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 94/145 (64%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKA ++Y+I +AG+VL G EVK++R +V + +SY ++ D +L +I Sbjct: 51 IANNRKAFHDYYIEEQIQAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVGCHITAL 110 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL++REI++L R G T+VP+ ++F+ +G K ++ LA+G Sbjct: 111 PTASTHVRPDPVRPRKLLLNQREINKLIGKTERAGYTIVPLNMHFH-RGKIKAEIGLAKG 169 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRE+ K+ DW R+K R++++ Sbjct: 170 KKLHDKRESSKESDWKREKQRLMKQ 194 >gi|114330602|ref|YP_746824.1| SsrA-binding protein [Nitrosomonas eutropha C91] gi|122314404|sp|Q0AIG7|SSRP_NITEC RecName: Full=SsrA-binding protein gi|114307616|gb|ABI58859.1| SsrA-binding protein [Nitrosomonas eutropha C91] Length = 149 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I +EAGIVL G EVK++R +V + ++Y E++L +I Sbjct: 3 IAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRAGRVQLKEAYIVIRRGELFLIGCHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P + RKLLL +I L V R G TLVP+ +++ A G K+++ LA+G Sbjct: 63 PTASTHVNPDPVKTRKLLLHAFQIKELIGKVERAGYTLVPLDMHYKA-GKIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE+EK+++W+R K R+LR Sbjct: 122 KKQYDKRESEKRKEWERDKQRLLRMR 147 >gi|28377651|ref|NP_784543.1| SsrA-binding protein [Lactobacillus plantarum WCFS1] gi|254555830|ref|YP_003062247.1| SsrA-binding protein [Lactobacillus plantarum JDM1] gi|300767620|ref|ZP_07077530.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179811|ref|YP_003923939.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258539|sp|Q88YG7|SSRP_LACPL RecName: Full=SsrA-binding protein gi|28270484|emb|CAD63386.1| SSRA RNA binding protein [Lactobacillus plantarum WCFS1] gi|254044757|gb|ACT61550.1| SsrA-binding protein [Lactobacillus plantarum JDM1] gi|300494605|gb|EFK29763.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045302|gb|ADN97845.1| SsrA-binding protein [Lactobacillus plantarum subsp. plantarum ST-III] Length = 156 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K G P ++ NRKAR++Y + ++EAGI LTGTE+KS+R +VN+ D + N Sbjct: 1 MA-KQHGKHPDTALAQNRKARHDYAVEETYEAGIALTGTEIKSVRDRRVNLKDGFVQVRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E W+ N +I + + NR+N P R+RKLLL K+EI +L AA G+T++P+K+Y Sbjct: 60 GEAWMQNVHISPFKEGNRYNVDPLRSRKLLLHKKEISKLGAATMTKGVTIIPLKMYLK-H 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A GK+ YDKR+ KKR+ RQ R+++ + Sbjct: 119 GFAKVLIGVAHGKREYDKRQDIKKREQQRQIDRVMKHY 156 >gi|52843035|ref|YP_096834.1| SsrA-binding protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148361149|ref|YP_001252356.1| SsrA (tmRNA) binding protein [Legionella pneumophila str. Corby] gi|296108483|ref|YP_003620184.1| SsrA-binding protein [Legionella pneumophila 2300/99 Alcoy] gi|61216447|sp|Q5ZRP1|SSRP_LEGPH RecName: Full=SsrA-binding protein gi|166223225|sp|A5II10|SSRP_LEGPC RecName: Full=SsrA-binding protein gi|52630146|gb|AAU28887.1| SsrA (tmRNA) binding protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148282922|gb|ABQ57010.1| SsrA (tmRNA) binding protein [Legionella pneumophila str. Corby] gi|295650385|gb|ADG26232.1| SsrA-binding protein [Legionella pneumophila 2300/99 Alcoy] Length = 156 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 97/159 (61%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++ NRKA ++Y I +EAG+VL G EVKSLR K+N+SDS+ + Sbjct: 1 MTTKKQPDS---TIALNRKAGFDYFIEDQYEAGLVLEGWEVKSLRAGKINLSDSHVIIKY 57 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + F P R RKLL++K+E++ L +V R G T+VP+ +Y+ Sbjct: 58 GEAFLLGAQIQPLPTASTHFIPDPIRTRKLLMNKKELNHLIGSVERQGYTIVPLSLYWKK 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + ALA+GKK +DKR+T K R+W R + RI++++ Sbjct: 118 NKIKIKI-ALAKGKKEHDKRDTIKDREWQRDRSRIMKKN 155 >gi|291549470|emb|CBL25732.1| SsrA-binding protein [Ruminococcus torques L2-14] Length = 154 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 105/159 (66%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA ++Y I+ +EAG+VL GTEVKSLR+ K +I +++ E+ Sbjct: 1 MAKTEK-----KLIANNKKAYHDYFILEKYEAGLVLHGTEVKSLRMGKCSIKEAFIRVED 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLLL K+EI +++ ++ G+T+VP+++YF+ Sbjct: 56 GEMYIYGMHISPYEKGNIFNKDPLRVRKLLLHKKEILKIFGKMKEQGITVVPLQVYFSGS 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L KI++ LA+GKK YDKRET K+D R+ R + N Sbjct: 116 -LVKIEIGLAKGKKLYDKRETIAKKDQKREAQREFKAFN 153 >gi|209542290|ref|YP_002274519.1| SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|209529967|gb|ACI49904.1| SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 162 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 102/159 (64%), Gaps = 1/159 (0%) Query: 1 MS-LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K G + + NRK R+NY I+ + EAG+VL G EVKSLR+ + I+++YA Sbjct: 1 MAEKKKSGMISTGIAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDR 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + EIWL NSYIPEY R RKLLL ++++ +L AV RDG+TLVP+ I+FNA Sbjct: 61 DGEIWLFNSYIPEYQGGVLSRFETRAPRKLLLHRKQVDKLLGAVARDGVTLVPLDIHFNA 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+AK+ L + +G+K DKR+ RDW R K R+LR Sbjct: 121 RGVAKVTLGIGEGRKKADKRQAIADRDWQRDKARLLRNK 159 >gi|84387677|ref|ZP_00990694.1| SsrA-binding protein [Vibrio splendidus 12B01] gi|86145626|ref|ZP_01063956.1| SsrA-binding protein [Vibrio sp. MED222] gi|84377522|gb|EAP94388.1| SsrA-binding protein [Vibrio splendidus 12B01] gi|85836597|gb|EAQ54723.1| SsrA-binding protein [Vibrio sp. MED222] Length = 161 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ KS+ ++ N+KAR+ Y I EAG+ L G EVKSLR K NI++SY Sbjct: 1 MAKNKSKSKAGSNTIALNKKARHEYFIDDEIEAGLELQGWEVKSLREGKTNIAESYVYIR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S++E+ L + R+GMTLV +Y++ Sbjct: 61 DGEAFISGMTITPLTQASTHIVANPTRIRKLLMSRKELDNLIGRINREGMTLVATALYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + AKI + +A+GKK +DKR K++DW R K RI++ + Sbjct: 121 -RSWAKIKVGVAKGKKLHDKRTDMKEKDWARDKARIMKSN 159 >gi|160898445|ref|YP_001564027.1| SsrA-binding protein [Delftia acidovorans SPH-1] gi|160364029|gb|ABX35642.1| SsrA-binding protein [Delftia acidovorans SPH-1] Length = 173 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++DN+KA +NY FEAGIVL G EVK+LR KV ++D Y ++ Sbjct: 17 MAKKPETQSR---IADNKKAAFNYFFEERFEAGIVLHGWEVKALRSGKVQLTDGYVIVKD 73 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L I + N R +KLLL K +I RL V + G TLVP+ +++ Sbjct: 74 GELFLLGCQINPLKTASTHVNPDAARIKKLLLKKDDILRLIGKVEQKGFTLVPINLHWK- 132 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K D+ALA+GK +DKR+ K R+ R+ R ++ N Sbjct: 133 NGFVKCDIALAKGKAEHDKRDVIKDREGKREVERAMKSFN 172 >gi|326330848|ref|ZP_08197149.1| SsrA-binding protein [Nocardioidaceae bacterium Broad-1] gi|325951378|gb|EGD43417.1| SsrA-binding protein [Nocardioidaceae bacterium Broad-1] Length = 159 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 5/152 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +K+++ N+KAR++YHI ++EAG+VL GTEVKSLR + ++ D + + Sbjct: 1 MAK----EQGRKMIAQNKKARHDYHIEDTYEAGMVLQGTEVKSLREGRASLVDGFVDIDR 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E W+ +IPEYL NH RR RKLLL + EI ++ V G+T+VP+ +YF Sbjct: 57 GEAWIHGIHIPEYLNGTWTNHAARRKRKLLLHRAEIDKIERKVAEKGLTVVPLALYF-LN 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152 G AK+++ +A+GKK++DKR T +R R+ Sbjct: 116 GRAKVEIGVAKGKKSWDKRNTIAERTAKREAE 147 >gi|294616242|ref|ZP_06696035.1| SsrA-binding protein [Enterococcus faecium E1636] gi|291590756|gb|EFF22472.1| SsrA-binding protein [Enterococcus faecium E1636] Length = 154 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++Y I+ + EAG+VL GTE+KS+R S++N+ D + N+E +L N +I Sbjct: 7 KLIAQNKKARHDYSIIDTMEAGMVLQGTEIKSIRNSRINLKDGFIRVRNEEAFLHNVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N FNH P R RKLLL K++I RL ++ G+T+VP+K+Y G AK+ + LA+ Sbjct: 67 PYEQGNIFNHDPLRTRKLLLHKKQIIRLENELKNTGITVVPLKVYIR-NGYAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK+YDKRE K++D DRQ R L+ + Sbjct: 126 GKKSYDKREDLKRKDIDRQIDRTLKNFS 153 >gi|119478699|ref|ZP_01618578.1| SsrA-binding protein [marine gamma proteobacterium HTCC2143] gi|119448380|gb|EAW29633.1| SsrA-binding protein [marine gamma proteobacterium HTCC2143] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 101/158 (63%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ N+KAR++YH+ FEAG+VL G EVKSLR+ KV I+D+Y +N Sbjct: 1 MAKK-KPKQTSNTIAQNKKARHDYHLTEKFEAGLVLHGWEVKSLRMGKVQITDTYVLIKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L ++I + F P R RKLLL+KREI +L A ++G T V +Y+ Sbjct: 60 GEAFLIGTHITPLNTASTHFIADPTRTRKLLLNKREIAKLLVATTQEGHTCVCTALYWKN 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + K ++ +A+GK+ +DKRETEK+RDW++QK R++R Sbjct: 120 H-IVKAEICIAKGKQQHDKRETEKERDWNKQKSRVMRH 156 >gi|90416959|ref|ZP_01224888.1| SmpB protein [marine gamma proteobacterium HTCC2207] gi|90331306|gb|EAS46550.1| SmpB protein [marine gamma proteobacterium HTCC2207] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 99/155 (63%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N+KA++NY + + FEAGI L G EVKSLR KVN++D+Y +N E Sbjct: 3 KKKPKAQSSTIALNKKAKHNYFLEQKFEAGIALMGWEVKSLREGKVNLTDTYVLLQNGEA 62 Query: 64 WLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL + I + + P R+RKLLL++RE+ +L A V + G T V +Y+ + L Sbjct: 63 WLIGTNITPLPTASTHYVTEPIRSRKLLLNRRELDKLEAGVNQKGHTCVCTAMYWKSH-L 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALA+GK ++DKR +K+RDWDRQK RI+R Sbjct: 122 IKVEIALAKGKADFDKRNDDKERDWDRQKQRIMRH 156 >gi|329121969|ref|ZP_08250581.1| SsrA-binding protein [Dialister micraerophilus DSM 19965] gi|327467267|gb|EGF12770.1| SsrA-binding protein [Dialister micraerophilus DSM 19965] Length = 156 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 74/159 (46%), Positives = 101/159 (63%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K P + NRKA ++Y I ++EAGIVLTGTEVKS+R ++NI DSYA E Sbjct: 1 MIKKEFTLPS----AVNRKAYHDYFIHDTYEAGIVLTGTEVKSIRSGRMNIKDSYARIEK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N++I Y Q NRFNH P R RKLL+ K+E+++L ++ G TL+P+KIYFN + Sbjct: 57 GELWLWNAHISPYEQGNRFNHDPLRTRKLLVHKKELNKLEIMMKTKGYTLIPLKIYFN-R 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K + +A GKK +DKR ++ R R L+E N Sbjct: 116 GKIKCLIGVATGKKLHDKRRDIAEKAVKRDLDRRLKERN 154 >gi|290959963|ref|YP_003491145.1| hypothetical protein SCAB_55751 [Streptomyces scabiei 87.22] gi|260649489|emb|CBG72604.1| small protein B homologue [Streptomyces scabiei 87.22] Length = 184 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/145 (45%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+V+ N+KAR++Y I+ ++EAG+VL GTEVKSLR + +++D + + E WL N++I Sbjct: 31 KKIVAQNKKARHDYAIIDTYEAGLVLMGTEVKSLREGRTSLADGFVQIDRGEAWLHNAHI 90 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 PEY Q + NH RR RKLLL + EI +L + + G T+VP+ +YF G AK ++ALA Sbjct: 91 PEYHQGSWTNHSARRKRKLLLHREEIDKLESKAQETGHTIVPLALYFKD-GRAKAEIALA 149 Query: 131 QGKKNYDKRETEKKRDWDRQKHRIL 155 +GKK YDKR+T +++ R+ R + Sbjct: 150 RGKKEYDKRQTLREQQDRRESDRAI 174 >gi|148260900|ref|YP_001235027.1| SsrA-binding protein [Acidiphilium cryptum JF-5] gi|326404297|ref|YP_004284379.1| ssrA-binding protein [Acidiphilium multivorum AIU301] gi|187611492|sp|A5FZS6|SSRP_ACICJ RecName: Full=SsrA-binding protein gi|146402581|gb|ABQ31108.1| SsrA-binding protein [Acidiphilium cryptum JF-5] gi|325051159|dbj|BAJ81497.1| ssrA-binding protein [Acidiphilium multivorum AIU301] Length = 159 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 66/146 (45%), Positives = 98/146 (67%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + + NRKAR+NY I + EAGIVL G EVKSLR+ + +S+++A + E++L N YIPE Sbjct: 14 IAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYIPE 73 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + RKLLL +++I +L A+ R G T+VP+ ++FN +GLAK+ L +A+G Sbjct: 74 YQGGVLSRFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEG 133 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 +K +DKR+ KRDW+R K RIL+ Sbjct: 134 RKQHDKRQAIAKRDWERDKARILKNR 159 >gi|283797701|ref|ZP_06346854.1| SsrA-binding protein [Clostridium sp. M62/1] gi|291074595|gb|EFE11959.1| SsrA-binding protein [Clostridium sp. M62/1] Length = 154 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K+V++N+KA ++Y I +E GI L GTEVKS+R+ K +I +++ EN ++++ Sbjct: 2 GTNNFKLVANNKKAFHDYFIDDKYETGIELYGTEVKSIRMGKCSIKEAFVRIENGQVYVY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R RKLL+ ++EI RL + ++ G TLVP+++Y L K++ Sbjct: 62 GMHISPYEKGNIFNRDPLRQRKLLMHRKEIDRLVSEIKEKGFTLVPLQVYLKGS-LVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + LA+GKK YDKRE K+D R+ R + Sbjct: 121 IGLARGKKLYDKREDLAKKDARREIERGFKAK 152 >gi|254468974|ref|ZP_05082380.1| SsrA-binding protein [beta proteobacterium KB13] gi|207087784|gb|EDZ65067.1| SsrA-binding protein [beta proteobacterium KB13] Length = 151 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 92/148 (62%), Gaps = 2/148 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N+KA ++Y I +EAGIVL G EVK++R +++NI +SY + EI+L +I Sbjct: 2 TIITNKKAFHDYFIEEKYEAGIVLEGWEVKAVRDNRINIKESYVIIQRGEIYLLGCHITP 61 Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + R RKLLL +EI +L V R G TLVP+ +F+ KG K+ + LA+ Sbjct: 62 LGAASTHIRPDAIRTRKLLLKGQEIVKLIGKVERSGFTLVPLDFHFS-KGKIKVQIGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKR+TEK++DW R+K RILR N Sbjct: 121 GKKQYDKRQTEKEKDWQREKERILRSAN 148 >gi|160880996|ref|YP_001559964.1| SsrA-binding protein [Clostridium phytofermentans ISDg] gi|187611477|sp|A9KPF1|SSRP_CLOPH RecName: Full=SsrA-binding protein gi|160429662|gb|ABX43225.1| SsrA-binding protein [Clostridium phytofermentans ISDg] Length = 154 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 99/152 (65%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K++++N+KAR++Y I ++EAG+VL GTEVKSLR+ K +I +S+ EN E+++ N Sbjct: 3 KEGIKLIANNKKARFDYFIEETYEAGVVLHGTEVKSLRMGKCSIKESFMRIENGEVYVYN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R +KLLL K +I+++ +++ G TLVP+ IY L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRVKKLLLHKFQINKIVGQIQQKGYTLVPLTIYLKDS-LVKMEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +A+GKK YDKR+ K+D R+ + + N Sbjct: 122 GVARGKKLYDKRQDIAKKDQKREAEKDFKVKN 153 >gi|293605085|ref|ZP_06687477.1| SsrA-binding protein [Achromobacter piechaudii ATCC 43553] gi|292816488|gb|EFF75577.1| SsrA-binding protein [Achromobacter piechaudii ATCC 43553] Length = 157 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + E++L ++ Sbjct: 3 IIDNRKASHDYFIEDRYEAGLVLQGWEVKAIRDGRVQLKESYVIVRDGELYLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+T +++DW R+K RI++ Sbjct: 122 KKLFDKRDTAREKDWQREKERIMKH 146 >gi|34498919|ref|NP_903134.1| SsrA-binding protein [Chromobacterium violaceum ATCC 12472] gi|39932275|sp|Q7NSG2|SSRP_CHRVO RecName: Full=SsrA-binding protein gi|34104768|gb|AAQ61125.1| small protein B [Chromobacterium violaceum ATCC 12472] Length = 151 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + NRKA ++Y I EAG+VL G EVK++R +V + +SY ++N WL +I Sbjct: 3 IIQNRKAFHDYFIEEKLEAGLVLEGWEVKAIRAGRVQLKESYVDWKNGAFWLIGCHITPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLL+S+ EI+R V R G T++ + +++ KG K ++ LA+G Sbjct: 63 QSASTHVKPDPVRPRKLLMSQAEINRFIGKVERAGYTMMALDLHYT-KGNVKAEVGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+TEK R+W R+K R+++ Sbjct: 122 KKLHDKRDTEKDREWQREKQRVMKN 146 >gi|81429020|ref|YP_396020.1| SsrA-binding protein [Lactobacillus sakei subsp. sakei 23K] gi|123563938|sp|Q38VS0|SSRP_LACSS RecName: Full=SsrA-binding protein gi|78610662|emb|CAI55713.1| t/mRNA binding protein (SsrA RNA binding protein) [Lactobacillus sakei subsp. sakei 23K] Length = 156 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P +++ N+KA ++Y+I+ +FEAG+VLTGTE+KS+R K+++ D +A Sbjct: 1 MAKKHPQKPA-NLIAQNKKAGHDYNILETFEAGLVLTGTEIKSVRKGKISLRDGFARVRR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L N +I Y Q N+FNH P RNRKLLL K+EI ++ A + G+T+VP+++Y Sbjct: 60 GEAYLENVHISPYEQGNQFNHDPLRNRKLLLHKKEIAKIGALTKDKGITIVPLRVYLK-H 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + + +GK+ YDKRET K+++ DR+ R LR+ Sbjct: 119 GFAKVLIGVGEGKREYDKRETLKRKEQDREMARALRKR 156 >gi|295111962|emb|CBL28712.1| SsrA-binding protein [Synergistetes bacterium SGP1] Length = 157 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 95/150 (63%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K V+ NRKAR++Y IV +FE GIVLTGTE+KS+R +N+ DSYA+ + E+WL Sbjct: 4 KANKTVAQNRKARHDYFIVDAFECGIVLTGTEIKSVRAGNLNLKDSYASLDEGELWLVGM 63 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y + +NH P R RKLLL + E+ RL VR G+TLVP+ +Y AK++LA Sbjct: 64 HISPYEKGTYYNHEPERRRKLLLHRHELLRLKGRVREKGLTLVPLSVYIKEGRRAKVELA 123 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+G+ +DKR+ RD R R +R + Sbjct: 124 LARGRTAHDKRDAIADRDAKRDMARAVRHN 153 >gi|220913142|ref|YP_002488451.1| SsrA-binding protein [Arthrobacter chlorophenolicus A6] gi|254778341|sp|B8HBH4|SSRP_ARTCA RecName: Full=SsrA-binding protein gi|219860020|gb|ACL40362.1| SsrA-binding protein [Arthrobacter chlorophenolicus A6] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 1/146 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KVV+ NRKAR++YH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+ Sbjct: 3 KESGRKVVATNRKARHDYHVLDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWME 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY Q + NH RR RKLLL + E+ ++ V+ G T+VP+++YF G AK++ Sbjct: 63 AIHIPEYNQGSWTNHAARRRRKLLLHREELIKISRKVQEAGYTIVPLQLYFVD-GRAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKH 152 + +A+GK+ YDKR+T +++ +R+ Sbjct: 122 IGVARGKREYDKRQTLREQQDNREAQ 147 >gi|328955243|ref|YP_004372576.1| SsrA-binding protein [Coriobacterium glomerans PW2] gi|328455567|gb|AEB06761.1| SsrA-binding protein [Coriobacterium glomerans PW2] Length = 158 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 89/148 (60%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+++ NR ARY Y I +FE G+VL+GTEV+SLR +SD++A E WL +I Sbjct: 7 KKLIARNRAARYEYAIEETFECGLVLSGTEVRSLRERAAQLSDTFALVRGGECWLVGLHI 66 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + FN P R RKLLL +R+I L +R G LVP+++YF+ G K+ + L Sbjct: 67 HPYSNGSIFNRDPDRRRKLLLHRRQIDYLDKKLRARGYALVPLELYFDRNGRVKLTVGLG 126 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR+ KRD R R L+E Sbjct: 127 RGKKLYDKRDDVAKRDMQRDIDRALKER 154 >gi|269103353|ref|ZP_06156050.1| tmRNA-binding protein SmpB [Photobacterium damselae subsp. damselae CIP 102761] gi|268163251|gb|EEZ41747.1| tmRNA-binding protein SmpB [Photobacterium damselae subsp. damselae CIP 102761] Length = 160 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N+ AR+ + I +EAGI L G EVK++R KVN+++SY N Sbjct: 1 MAKKPNKKPGSNTIAKNKSARFEFAITDEYEAGISLQGWEVKAIRDGKVNMTESYVYLRN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++++ I + P R RKLLL++REI +L AV RDG T+V + +Y+ A Sbjct: 61 GEVFISGLTITPLQAASTHVVADPTRIRKLLLNRREIDKLTGAVNRDGETIVALNMYWKA 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 K+ + A+GKK +DKR K RDW R K RI++ Sbjct: 121 S-FVKVKIGTARGKKLHDKRADTKARDWQRDKARIMK 156 >gi|257456966|ref|ZP_05622147.1| SsrA-binding protein [Treponema vincentii ATCC 35580] gi|257445675|gb|EEV20737.1| SsrA-binding protein [Treponema vincentii ATCC 35580] Length = 200 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 91/150 (60%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P K+++ N+KA ++Y I + E GI L GTE+KS+R +++ DS+A +E+WL N + Sbjct: 51 PIKIIAKNKKAHFDYSIEETIECGIALQGTEIKSVRDGRISFPDSFAEIIRNEVWLKNFH 110 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY+ ++ FNH P R +KLLL K EI RL G TL+P++ Y +G K+ L + Sbjct: 111 ISEYVYSSIFNHDPDRPKKLLLHKDEIKRLTRKTEEKGYTLIPLEFYLK-RGRIKVMLGI 169 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKR K+RD R R L N Sbjct: 170 CKGKKQFDKRADIKERDIKRDMQRELHLKN 199 >gi|149178101|ref|ZP_01856696.1| SsrA-binding protein [Planctomyces maris DSM 8797] gi|148843021|gb|EDL57389.1| SsrA-binding protein [Planctomyces maris DSM 8797] Length = 164 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 67/155 (43%), Positives = 96/155 (61%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ +P + + NRKAR+NY I+ + + GIVL G+EVKS+R +KV+I + +A +NDE+W Sbjct: 10 SKEDPNSRTICQNRKARHNYEILDTLDCGIVLAGSEVKSIRANKVSIEEGFARMQNDEVW 69 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N I Y QAN NH RR RKLL+ K EI + +TL+P+ +YF +GL K Sbjct: 70 LFNVDIALYPQANTMNHQTRRPRKLLMKKAEIRKFAERSENSSLTLIPLSMYFT-RGLVK 128 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + L +A+G+K +DKRE KK R +R N Sbjct: 129 VKLGIAKGRKLHDKREKLKKDSARMDIQRAMRARN 163 >gi|125718407|ref|YP_001035540.1| SsrA-binding protein [Streptococcus sanguinis SK36] gi|157150641|ref|YP_001450021.1| SsrA-binding protein [Streptococcus gordonii str. Challis substr. CH1] gi|262282696|ref|ZP_06060464.1| SsrA-binding protein [Streptococcus sp. 2_1_36FAA] gi|322385826|ref|ZP_08059469.1| SsrA-binding protein [Streptococcus cristatus ATCC 51100] gi|323351182|ref|ZP_08086838.1| SsrA-binding protein [Streptococcus sanguinis VMC66] gi|166223466|sp|A3CP85|SSRP_STRSV RecName: Full=SsrA-binding protein gi|189046851|sp|A8AW61|SSRP_STRGC RecName: Full=SsrA-binding protein gi|125498324|gb|ABN44990.1| VacB-like protein, putative [Streptococcus sanguinis SK36] gi|157075435|gb|ABV10118.1| SsrA-binding protein [Streptococcus gordonii str. Challis substr. CH1] gi|262261987|gb|EEY80685.1| SsrA-binding protein [Streptococcus sp. 2_1_36FAA] gi|321270111|gb|EFX53028.1| SsrA-binding protein [Streptococcus cristatus ATCC 51100] gi|322122406|gb|EFX94117.1| SsrA-binding protein [Streptococcus sanguinis VMC66] gi|324991460|gb|EGC23393.1| SsrA-binding protein [Streptococcus sanguinis SK353] gi|324993811|gb|EGC25730.1| SsrA-binding protein [Streptococcus sanguinis SK405] gi|324994868|gb|EGC26781.1| SsrA-binding protein [Streptococcus sanguinis SK678] gi|325687302|gb|EGD29324.1| SsrA-binding protein [Streptococcus sanguinis SK72] gi|325696169|gb|EGD38060.1| SsrA-binding protein [Streptococcus sanguinis SK160] gi|327460970|gb|EGF07303.1| SsrA-binding protein [Streptococcus sanguinis SK1057] gi|327463085|gb|EGF09406.1| SsrA-binding protein [Streptococcus sanguinis SK1] gi|327470600|gb|EGF16056.1| SsrA-binding protein [Streptococcus sanguinis SK330] gi|327474686|gb|EGF20091.1| SsrA-binding protein [Streptococcus sanguinis SK408] gi|328946712|gb|EGG40850.1| SsrA-binding protein [Streptococcus sanguinis SK1087] Length = 155 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQIKNGEAWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R ++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARQMKNFN 153 >gi|296111280|ref|YP_003621662.1| SsrA-binding protein [Leuconostoc kimchii IMSNU 11154] gi|295832812|gb|ADG40693.1| SsrA-binding protein [Leuconostoc kimchii IMSNU 11154] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 97/157 (61%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + K ++ NRKAR+NY I +FEAG+ LTGTE+KS+R ++ I D + T + Sbjct: 1 MAKKKQNT--DKYLAQNRKARFNYAIAETFEAGLSLTGTEIKSVRSGQITIGDGFVTIHD 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 LTN I Y Q N+FN P R+R+LLL K EI L A G+T+VP+K+Y Sbjct: 59 GNAMLTNVNIASYEQGNQFNVDPIRSRQLLLHKHEIATLSKAASEAGVTIVPLKVYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+ + + +GKK YDKRE K+RD +R+ R L+ Sbjct: 118 GFAKVLIGIGRGKKKYDKREDIKRRDQERELRRRLKN 154 >gi|152980762|ref|YP_001353728.1| SsrA-binding protein [Janthinobacterium sp. Marseille] gi|151280839|gb|ABR89249.1| SsrA(tmRNA)-binding protein [Janthinobacterium sp. Marseille] Length = 149 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 91/146 (62%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I FEAG+VL G E KS+R +V + ++Y NDEI+L S+I Sbjct: 3 IVDNRKAFHDYFIEERFEAGVVLQGWEAKSIRAGRVQLKEAYVIVRNDEIFLFGSHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL EI +L A V R G TLVP+ +++ +G K ++ LA+G Sbjct: 63 ATASTHITPDPVRTRKLLLKSEEIKKLSAKVERSGYTLVPLNLHY-QRGYIKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR+TEK+RD R+ +++++ Sbjct: 122 KKQHDKRDTEKQRDTQREIQSVMKQN 147 >gi|326791895|ref|YP_004309716.1| SsrA-binding protein [Clostridium lentocellum DSM 5427] gi|326542659|gb|ADZ84518.1| SsrA-binding protein [Clostridium lentocellum DSM 5427] Length = 156 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++ KV+++N+KA ++Y I +EAGI L GTEVKS+R ++ +S+ +N E + Sbjct: 2 AKDRTSFKVIANNKKAYHDYFIDEVYEAGIALAGTEVKSIRQGGCSVKESFIKIKNGEAF 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + N ++ Y N FN P R RKLLL KREI++L + GMT+VP+++Y L K Sbjct: 62 IFNMHVNPYDHGNIFNKDPLRTRKLLLHKREINKLIGETTQKGMTIVPLRVYIKGS-LVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++ LA+GKK +DKR+ K+D R R + N Sbjct: 121 VEMGLARGKKLHDKRQDIVKKDTQRASEREFKIKN 155 >gi|153006645|ref|YP_001380970.1| SsrA-binding protein [Anaeromyxobacter sp. Fw109-5] gi|187611468|sp|A7HGZ0|SSRP_ANADF RecName: Full=SsrA-binding protein gi|152030218|gb|ABS27986.1| SsrA-binding protein [Anaeromyxobacter sp. Fw109-5] Length = 165 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ NR+AR+++ I S+EAG+VLTG+EVKSLR VN+SD+YA DE++L N I Sbjct: 18 KIVATNRRARFDFTIEDSWEAGLVLTGSEVKSLREGNVNLSDAYALPRGDELFLVNCRIG 77 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY QA F H P R+RKLL+++ E+ R+ + + G TLVP+++YF G AK++L LA+ Sbjct: 78 EYKQAAHFGHEPLRDRKLLMNRPELDRVKGKIEQRGYTLVPLRLYFKQ-GWAKVELGLAK 136 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 G+ + D+R +R+ R+ R + Sbjct: 137 GRSHEDRRHAIAERETKREMDREISRR 163 >gi|73666719|ref|YP_302735.1| SsrA-binding protein [Ehrlichia canis str. Jake] gi|123615152|sp|Q3YT18|SSRP_EHRCJ RecName: Full=SsrA-binding protein gi|72393860|gb|AAZ68137.1| SsrA-binding protein [Ehrlichia canis str. Jake] Length = 148 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 76/144 (52%), Positives = 108/144 (75%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V+ +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I+++Y T +N E+WL N +I E Sbjct: 3 VIIENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAEAYVTEKNMELWLCNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A+ NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KGLAK + + +G Sbjct: 63 YNHASTKNHNPTRPRKLLLRKKQIYKISGNIKNDGFTVVPLSLYFNEKGLAKAKIVIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRET K RDW+R+K R+LR Sbjct: 123 KKLHDKRETIKTRDWNREKSRVLR 146 >gi|33592540|ref|NP_880184.1| SsrA-binding protein [Bordetella pertussis Tohama I] gi|33601604|ref|NP_889164.1| SsrA-binding protein [Bordetella bronchiseptica RB50] gi|39932319|sp|Q7VYA8|SSRP_BORPE RecName: Full=SsrA-binding protein gi|39932330|sp|Q7WJ73|SSRP_BORBR RecName: Full=SsrA-binding protein gi|33572186|emb|CAE41732.1| SsrA-binding protein [Bordetella pertussis Tohama I] gi|33576041|emb|CAE33120.1| SsrA-binding protein [Bordetella bronchiseptica RB50] Length = 155 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + EI+L ++ Sbjct: 3 IIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYVIVRDGEIYLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKR+T +++DW R+K R+L+ Sbjct: 122 KKLYDKRDTAREKDWQREKERVLKH 146 >gi|302334958|ref|YP_003800165.1| SsrA-binding protein [Olsenella uli DSM 7084] gi|301318798|gb|ADK67285.1| SsrA-binding protein [Olsenella uli DSM 7084] Length = 169 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 91/155 (58%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 KK +S NR AR++Y I ++EAGI LTGTEVKS+R I+DS+ E++ Sbjct: 14 KGPERDKKTISRNRTARHDYEIGETWEAGIELTGTEVKSIRERPCQITDSFCIVRGGELF 73 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L +I Y +N P R R+LL+ +R+I + +R G +LVP+++YF+ + K Sbjct: 74 LVGVHIHPYSNGGVWNVDPDRRRRLLMHRRQIDLIDQRLRTKGSSLVPLELYFDERNRVK 133 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + + L +GKK YDKR +RD +R+ R L+E + Sbjct: 134 LRVGLGKGKKLYDKRADMARRDANREIQRALKERS 168 >gi|258593295|emb|CBE69634.1| trans-translation protein, binds tmRNA and tRNA (SsrA-binding protein) [NC10 bacterium 'Dutch sediment'] Length = 157 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 69/146 (47%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K+++ NR+ARY Y I EAGI LTGTEVKSLR ++ DSYA E++E +L N +I Sbjct: 7 KRILCSNRRARYEYQIEEVIEAGIALTGTEVKSLREGGADLKDSYAAIEDEEAYLFNCHI 66 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y NRFN P R RKLLL + EI RL V+ G+T++P+ +Y + K++LALA Sbjct: 67 SPYAAGNRFNPDPNRTRKLLLHREEIMRLMGKVQTKGLTVIPLSVYVAGR-KIKVELALA 125 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156 +GKK YDKRET K+R ++ ++ R Sbjct: 126 RGKKLYDKRETLKQRAMTKEMAQLAR 151 >gi|270308651|ref|YP_003330709.1| ssrA binding protein (smpB) [Dehalococcoides sp. VS] gi|270154543|gb|ACZ62381.1| ssrA binding protein (smpB) [Dehalococcoides sp. VS] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKA +NY + +EAGIVL GTE+KSLR +VN+ D+Y + E+WL N++I Sbjct: 6 TLTTNRKAFHNYFLEEKYEAGIVLLGTEIKSLRGGRVNMGDAYVKPQGGELWLVNAHISA 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +H P R RKLL+ ++EI L + V+ G+TLVP++IY +AK++L+L +G Sbjct: 66 YQCSGHTSHEPLRERKLLMHRKEIALLMSKVKEKGLTLVPVRIYLKND-IAKVELSLGRG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR+T KRD +R+ R ++ N Sbjct: 125 KKLYDKRDTITKRDTERELEREIKHRN 151 >gi|259046368|ref|ZP_05736769.1| SsrA-binding protein [Granulicatella adiacens ATCC 49175] gi|259037005|gb|EEW38260.1| SsrA-binding protein [Granulicatella adiacens ATCC 49175] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 64/152 (42%), Positives = 101/152 (66%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KV++ NRKA ++Y I+ + EAG+VLTGTE+KS+R +++N+ D Y + + E +L Sbjct: 3 KGTNDKVLAQNRKASHDYTILETIEAGMVLTGTEIKSVRQARINLKDGYVSLKQGEAFLV 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I + Q FNH P R RKLLL K++I+ L V++ G T+VP+K+Y G+AK+ Sbjct: 63 GVHISPFEQGTLFNHDPLRTRKLLLHKKQINYLLEQVKQAGNTVVPLKVYIK-NGVAKLL 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +A+GKKNYDKR+ K++D R+ R ++E Sbjct: 122 IGVAKGKKNYDKRDALKQKDMKREIDRAMKER 153 >gi|257069172|ref|YP_003155427.1| SsrA-binding protein [Brachybacterium faecium DSM 4810] gi|256559990|gb|ACU85837.1| SsrA-binding protein [Brachybacterium faecium DSM 4810] Length = 168 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P K +++ N++AR++Y I ++EAGIVL+GTEVKSLR ++ D Y + E+W+ N+ Sbjct: 17 PRKMLIASNKRARHDYFIDHTWEAGIVLSGTEVKSLRDRGASLIDGYCYVDAGEVWMDNA 76 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y++ NH RR RKLLL K+EI +L + R G T+VP++IYF AK+ + Sbjct: 77 HIAPYVKGTWTNHAARRKRKLLLHKQEIEKLASKSREKGFTIVPLEIYFLGSH-AKVLIG 135 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GKK +DKR+T +++ R+ R +R+ Sbjct: 136 LARGKKEWDKRQTLREQQDLREAQRAMRQR 165 >gi|325294240|ref|YP_004280754.1| SsrA-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064688|gb|ADY72695.1| SsrA-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 152 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 69/144 (47%), Positives = 96/144 (66%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA Y+Y I+ +EAGI L GTEVKSLR K N+ DS+ EN E +L N+YI Y Sbjct: 8 IKNKKAFYDYEILEKYEAGIELKGTEVKSLREGKANLRDSFVRIENGEAFLFNAYIAPYT 67 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 N FNH P R RKLLL K EI RL + G+T+VP+++YFN +G K+++AL +GKK Sbjct: 68 HGNLFNHEPNRKRKLLLHKSEIKRLLGKTQEKGLTIVPLRMYFNKRGKVKVEIALVKGKK 127 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKRE K+R+ +R+ + ++ + Sbjct: 128 KYDKREAIKRRELEREAQKAMKYY 151 >gi|163840106|ref|YP_001624511.1| SsrA-binding protein [Renibacterium salmoninarum ATCC 33209] gi|189046839|sp|A9WPU0|SSRP_RENSM RecName: Full=SsrA-binding protein gi|162953582|gb|ABY23097.1| SsrA-binding protein [Renibacterium salmoninarum ATCC 33209] Length = 156 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 72/153 (47%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KVV+ NRKAR+ YH+ ++EAG+ L GTEVKSLR + N++D +ATF DE+WL Sbjct: 3 KESGRKVVATNRKARHEYHLGDTYEAGLALMGTEVKSLREGRANLTDGFATFYGDELWLE 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 YIPEYL + NH RR RKLLL + E+ ++ R G TLVP+++YF G AK++ Sbjct: 63 AVYIPEYLNGSWNNHSARRRRKLLLHRAELIKISHKTREAGFTLVPLQLYFLD-GKAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +ALA+GK++YDKR+ ++ R+ R +RE N Sbjct: 122 IALAKGKRDYDKRQALREAQDTRESLRAMREKN 154 >gi|303249277|ref|ZP_07335510.1| SsrA-binding protein [Desulfovibrio fructosovorans JJ] gi|302489316|gb|EFL49272.1| SsrA-binding protein [Desulfovibrio fructosovorans JJ] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +K+V+ N+KAR+ Y + +EAG+ LTG+EVKSLR +V+ D Y FE Sbjct: 1 MTAKE---SGEKLVAQNKKARHLYEFLEKYEAGMALTGSEVKSLRAGRVSFKDGYVKFEG 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE +L +I Y A H P R RKLLL EI L + V + G+T+VP++IYF Sbjct: 58 DEAFLVGVHIGVYENAGYAGHEPERRRKLLLHAAEIRTLRSRVEQKGLTVVPVRIYFK-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK ++ALA+GKK +D+R+ K RD DR R L H Sbjct: 117 GRAKTEIALARGKKVFDRRDDLKNRDLDRDAARELARH 154 >gi|212634277|ref|YP_002310802.1| SsrA-binding protein [Shewanella piezotolerans WP3] gi|212555761|gb|ACJ28215.1| SmpB protein [Shewanella piezotolerans WP3] Length = 198 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 89/160 (55%), Gaps = 3/160 (1%) Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY Sbjct: 35 MAKKNAKNSKNSSASIARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFL 94 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E +L I + P R+RKLLL ++E+ +L V R G ++VP+ +Y+ Sbjct: 95 RDGEAFLFGCTIAPLNTASTHVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 154 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI++ L +GKK++DKRE K R+W +K R +++ Sbjct: 155 QKGAWVKIEIGLGKGKKDHDKREDTKDREWQIEKSRTMKK 194 >gi|330937922|gb|EGH41710.1| SsrA-binding protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 152 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 92/147 (62%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KAR++Y I FEAG+VL+G EVKSLR +KV + DSY ++ E WL +I Sbjct: 3 TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRATKVQLVDSYVLLKDGEAWLMGCHITP 62 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLL+KRE+ +L ++V++ G V + +Y+ L K ++AL + Sbjct: 63 LKTASTHVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKEH-LVKCEIALGK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR TE++RD DR+ R +R Sbjct: 122 GKKEYDKRHTERERDSDRELQRAVRSK 148 >gi|167761607|ref|ZP_02433734.1| hypothetical protein CLOSCI_04018 [Clostridium scindens ATCC 35704] gi|167660750|gb|EDS04880.1| hypothetical protein CLOSCI_04018 [Clostridium scindens ATCC 35704] Length = 161 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 97/155 (62%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 K++++N+KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +++ EN E++ Sbjct: 6 KMAKMNGKMIANNKKAYHDYFILENYEAGIALHGTEVKSLRMGKCSIKEAFIRVENGEVY 65 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + +I Y + N FN P R RKLLL K EI++L + G+ +VP+K+YF L K Sbjct: 66 IYGMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLLGKTKEKGIAIVPLKVYFKGS-LVK 124 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +++ LA+GKK YDKR+ ++D R+ R + N Sbjct: 125 VEIGLAKGKKLYDKRQDIARKDQQREAQRDFKVRN 159 >gi|320536525|ref|ZP_08036552.1| SsrA-binding protein [Treponema phagedenis F0421] gi|320146625|gb|EFW38214.1| SsrA-binding protein [Treponema phagedenis F0421] Length = 154 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 66/153 (43%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K+++ N+KA +NY + S E G+VL GTEVKS+R +++ DS+A N E+WL Sbjct: 2 KGQGRKIIAKNKKAFFNYTVEDSIECGLVLEGTEVKSVREGRISFPDSFAEIINLEVWLK 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N I EY ++ FNH P R +KLLL K EI RL G TL+P++ Y G+ K+ Sbjct: 62 NFSIAEYPFSSIFNHDPNRPKKLLLHKDEIKRLQRKTEEKGYTLIPLEFYLK-NGIIKVQ 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L + +GKK +DKR K+RD R+ R LRE N Sbjct: 121 LGICKGKKLFDKRADIKERDIHRETQRELRERN 153 >gi|294084110|ref|YP_003550868.1| SmpB protein [Candidatus Puniceispirillum marinum IMCC1322] gi|292663683|gb|ADE38784.1| SmpB protein [Candidatus Puniceispirillum marinum IMCC1322] Length = 155 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 72/146 (49%), Positives = 102/146 (69%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKAR+ Y I EAG++L G+EVKSLR + +I++SYA ++ + L N+ IP Y Sbjct: 11 IAENRKARHEYEIEDRIEAGLILLGSEVKSLRTGRASIAESYAGEDSGRLMLFNANIPIY 70 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 A R NH P+R R+LL+ RE ++L +RR+GMTLVP+ +YFN KG+AKI + LA+G+ Sbjct: 71 EPA-RVNHEPKRPRELLVKARERNKLLGLIRREGMTLVPLSLYFNDKGVAKISVGLAKGR 129 Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159 K DKR+ K RDW R K R+LR N Sbjct: 130 KKQDKRQAAKDRDWGRDKARLLRGKN 155 >gi|56479236|ref|YP_160825.1| SsrA-binding protein [Aromatoleum aromaticum EbN1] gi|67461303|sp|Q5NYE0|SSRP_AZOSE RecName: Full=SsrA-binding protein gi|56315279|emb|CAI09924.1| tmRNA-binding protein [Aromatoleum aromaticum EbN1] Length = 148 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 61/144 (42%), Positives = 92/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I ++EAG+VL G EVK++R + NI ++Y +E+++ +I Sbjct: 3 IIDNRKAFHDYFIEETYEAGLVLEGWEVKAIRAGRANIKEAYVILRGEELFILGMHISAL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLL+ +EI +L V R G TLVP+ +++ AKG K + LA+G Sbjct: 63 QSASTHVETDPVRTRKLLMHAKEIAKLIGKVERAGFTLVPLDLHY-AKGRIKATIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK YDKRE+EK+RDW+R K R++R Sbjct: 122 KKQYDKRESEKERDWERDKARLMR 145 >gi|134094683|ref|YP_001099758.1| SsrA-binding protein [Herminiimonas arsenicoxydans] gi|133738586|emb|CAL61631.1| SsrA-binding protein [Herminiimonas arsenicoxydans] Length = 149 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 95/147 (64%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + DNRKA ++Y I +EAGIVL G EVK++R +V + ++Y ++EI+L +++ Sbjct: 2 TIVDNRKAFHDYFIEDRYEAGIVLQGWEVKAIRAGRVQLREAYVIARDNEIYLFGAHVSA 61 Query: 73 YLQANRFNHYP-RRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + F+H R RKLLL +I +L + V + G T+VP+ +++ G K D+ALA+ Sbjct: 62 LNSTSSFDHPEAIRTRKLLLHAAQIKKLVSKVDQSGFTMVPVNLHWVG-GRVKCDIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR TEK+RDW R++ +I++ H Sbjct: 121 GKKEYDKRNTEKERDWQREQQKIMKIH 147 >gi|149183606|ref|ZP_01862026.1| SsrA-binding protein [Bacillus sp. SG-1] gi|148848696|gb|EDL62926.1| SsrA-binding protein [Bacillus sp. SG-1] Length = 157 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 64/147 (43%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR+++ I ++EAG+VL GTE+K++R +VN+ DS+A + E+++ N +I Sbjct: 7 KLIAQNKKARHDFTIEETYEAGLVLQGTEIKAIRAGRVNLKDSFARIQQGEVFVHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL K++I L + G +LVP+K+Y G+AK+ + LA+ Sbjct: 67 PYEQGNRYNHEPLRTRKLLLHKKQIATLIGETKEAGYSLVPLKLYIK-NGVAKLLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K++D +R R L + Sbjct: 126 GKKKYDKREDLKRKDANRTIQRELAQR 152 >gi|39932288|sp|Q7UH38|SSRP_RHOBA RecName: Full=SsrA-binding protein Length = 176 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 95/152 (62%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 P V++NRKA++ Y I+ S E G++L G+EVKS+R K+++ +++ N E+WL Sbjct: 25 NQPNITPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 84 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 S I Y A +NH PRR RKLL+ +E + G+TL+P+++YF+ +GLAK Sbjct: 85 GSDIAHYNNAGMWNHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKCV 144 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +GKK +DKRET KKR+ DR R +R Sbjct: 145 MGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 176 >gi|254483105|ref|ZP_05096339.1| SsrA-binding protein [marine gamma proteobacterium HTCC2148] gi|214036627|gb|EEB77300.1| SsrA-binding protein [marine gamma proteobacterium HTCC2148] Length = 163 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 105/159 (66%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P V++ NR+A ++YH++ +FEAG+ L+G EVKSLR+ K +++DSY ++ Sbjct: 4 MAKKKSHKP-SNVIAQNRRASFDYHLLENFEAGVALSGWEVKSLRMGKADLADSYVLMKD 62 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S+I + + P R RKLLL+K+E+ +L AV + G T V ++Y+ Sbjct: 63 GEAFLLGSHIVPLDTVSTHYVTDPSRTRKLLLNKKELAKLQVAVTQKGQTCVCTQLYWKG 122 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K +ALA+GKK +DKR+++K +DW+RQK RI+R++ Sbjct: 123 H-LVKARIALAEGKKAHDKRDSQKDKDWNRQKQRIVRDN 160 >gi|319793522|ref|YP_004155162.1| ssra-binding protein [Variovorax paradoxus EPS] gi|315595985|gb|ADU37051.1| SsrA-binding protein [Variovorax paradoxus EPS] Length = 158 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 91/160 (56%), Gaps = 4/160 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++DN+KA YNY FEAGIVL G EVKSLR KV ++D Y + Sbjct: 1 MATKKQDTSSR--IADNKKAAYNYFFEERFEAGIVLEGWEVKSLREGKVQLTDGYVVIRD 58 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+++ I + N R +KLLL K EI RL V + G TLVP+ +++ A Sbjct: 59 GELFVVGLQINPLKSASTHVNPDSIRTKKLLLHKEEIRRLVGKVEQKGYTLVPLNLHWKA 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K D+ALA+GK +DKR+T K R+ R+ R ++ + Sbjct: 119 -GKVKCDIALAKGKAEHDKRDTIKDREGKREVERAMKSRS 157 >gi|82702332|ref|YP_411898.1| SsrA-binding protein [Nitrosospira multiformis ATCC 25196] gi|123544666|sp|Q2Y9R5|SSRP_NITMU RecName: Full=SsrA-binding protein gi|82410397|gb|ABB74506.1| SsrA-binding protein [Nitrosospira multiformis ATCC 25196] Length = 147 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 57/144 (39%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE- 72 + N+KA ++Y I EAG VL G EVK++R + + ++Y N E++L ++ Sbjct: 3 IVQNKKAFHDYFIEEKHEAGAVLEGWEVKAIRAGRAQLKEAYVIIRNGELFLIGCHVSPL 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL EI RL V R G TLVP+ I++ KG K+++ LA+G Sbjct: 63 LAASTHIQPDPVRTRKLLLHAEEIKRLIGKVERAGYTLVPLDIHYK-KGRIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRE+EK+++W+R K R++R Sbjct: 122 KKQHDKRESEKQKEWERDKQRLMR 145 >gi|282858103|ref|ZP_06267298.1| SsrA-binding protein [Pyramidobacter piscolens W5455] gi|282584025|gb|EFB89398.1| SsrA-binding protein [Pyramidobacter piscolens W5455] Length = 157 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 73/146 (50%), Positives = 99/146 (67%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 VV+ NRKAR++Y +V +FE G+VLTGTE+KS+R KVN+ D YA FE E+WL N +I Sbjct: 8 VVALNRKARHDYFVVDTFECGVVLTGTEIKSVRTGKVNLKDGYAKFERGELWLMNVHISP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y +A+ + H PR+NRKLLL K E+ RL A V+ G TL+P+ +Y +AK+ LALAQG Sbjct: 68 YEKASWYQHDPRQNRKLLLHKSELRRLGARVKEKGFTLIPLSMYLKEGRIAKVALALAQG 127 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K +D+R+ +RD R R LR Sbjct: 128 KNAHDRRDAIIERDAKRAIARELRNR 153 >gi|119356646|ref|YP_911290.1| SsrA-binding protein [Chlorobium phaeobacteroides DSM 266] gi|166222377|sp|A1BEN9|SSRP_CHLPD RecName: Full=SsrA-binding protein gi|119353995|gb|ABL64866.1| SsrA-binding protein [Chlorobium phaeobacteroides DSM 266] Length = 157 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + + + NRKAR+ +HI+ + AGI L G+EVKS+R K ++++SYA + Sbjct: 1 MSKKQQPQTFVQAI-HNRKARFEFHILETMVAGIELLGSEVKSVRQGKASLNESYAMIHH 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N I Y + +R+RKLLL++ EI +L + G+TLVP+K +FN + Sbjct: 60 GEVWLENMQITPYEHNHLDTLEAKRSRKLLLNREEIRKLETKINEKGLTLVPLKAFFNNR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ KI++ALA+GKK YDKRET K RD +RQ ++ + + Sbjct: 120 GILKIEIALAKGKKLYDKRETIKSRDAERQLQQLKKTY 157 >gi|163856826|ref|YP_001631124.1| SsrA-binding protein [Bordetella petrii DSM 12804] gi|163260554|emb|CAP42856.1| SsrA-binding protein [Bordetella petrii] Length = 151 Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 89/145 (61%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I FEAG+VL G EVK++R ++V + +SY + E++L ++ Sbjct: 3 IIDNRKATHDYFIEDRFEAGLVLQGWEVKAIRENRVQLKESYVIVRDGELFLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHVHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKR+T +++DW R+K RI++ Sbjct: 122 KKLYDKRDTAREKDWQREKERIMKH 146 >gi|295092073|emb|CBK78180.1| SsrA-binding protein [Clostridium cf. saccharolyticum K10] Length = 154 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K+V++N+KA ++Y I +E GI L GTEVKS+R+ K +I +++ EN ++++ Sbjct: 2 GTNNFKLVANNKKAFHDYFIDDKYETGIELYGTEVKSIRMGKCSIKEAFVRIENGQVYVY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R RKLL+ ++EI RL + ++ G TLVP+++Y L K++ Sbjct: 62 GMHISPYEKGNIFNRDPLRQRKLLMHRKEIDRLVSKIKEKGFTLVPLQVYLKGS-LVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + LA+GKK YDKRE K+D R+ R + Sbjct: 121 IGLARGKKLYDKREDLAKKDARREIERGFKAK 152 >gi|33596193|ref|NP_883836.1| SsrA-binding protein [Bordetella parapertussis 12822] gi|39932325|sp|Q7WA41|SSRP_BORPA RecName: Full=SsrA-binding protein gi|33573196|emb|CAE36851.1| SsrA-binding protein [Bordetella parapertussis] Length = 155 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R +V++ +SY + EI+L ++ Sbjct: 3 IIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVHLKESYVIVRDGEIYLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHIRPDATRTRKLLLKAEEIRKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKR+T +++DW R+K R+L+ Sbjct: 122 KKLYDKRDTAREKDWQREKERVLKH 146 >gi|258507938|ref|YP_003170689.1| SsrA-binding protein [Lactobacillus rhamnosus GG] gi|257147865|emb|CAR86838.1| SsrA-binding protein [Lactobacillus rhamnosus GG] gi|259649265|dbj|BAI41427.1| SsrA-binding protein [Lactobacillus rhamnosus GG] Length = 157 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E WL N I Y + N FN P RNRKLLL K+EI +L R G+TLVP+++Y Sbjct: 60 NEAWLENVRISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQGVTLVPLRMYLK-H 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GK NYDKRET K++D +R+ R L+ Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 156 >gi|227546358|ref|ZP_03976407.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213339|gb|EEI81211.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 158 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65 +K+++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL Sbjct: 3 KETGEKLIAQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 122 EIALARGKKEFDKRQALREEQDKRETLRAMRYAN 155 >gi|325694813|gb|EGD36718.1| SsrA-binding protein [Streptococcus sanguinis SK150] Length = 155 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQIKNGEAWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKR++ K+R+ +R R ++ N Sbjct: 126 GKHDYDKRDSIKRREQNRDIARQMKNFN 153 >gi|237653292|ref|YP_002889606.1| SsrA-binding protein [Thauera sp. MZ1T] gi|237624539|gb|ACR01229.1| SsrA-binding protein [Thauera sp. MZ1T] Length = 148 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 94/144 (65%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + +NRKA ++Y I EAGIVL G EVK++R + NI +SY +EI++ +I Sbjct: 3 IIENRKALHDYFIEEKHEAGIVLEGWEVKAIRAGRSNIKESYVVIRAEEIFVFGMHITPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 ++ H P R RKLLL K+EI RL V R G TLVP+ +++ GL K+++ LA+G Sbjct: 63 STASSHVRHDPTRTRKLLLHKKEIARLIGKVERAGYTLVPLDLHYK-NGLVKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRE EKK+DW+R+K R++R Sbjct: 122 KKLHDKREDEKKKDWEREKQRLMR 145 >gi|312864771|ref|ZP_07725002.1| SsrA-binding protein [Streptococcus downei F0415] gi|311099898|gb|EFQ58111.1| SsrA-binding protein [Streptococcus downei F0415] Length = 160 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + V++ N+KAR++Y IV + EAG+VLTGTE+KS+R S++ + D YA +N + Sbjct: 1 MAKKPSQTNNVLAQNKKARHDYSIVDTIEAGMVLTGTEIKSVRASRIQLKDGYAQIKNGQ 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N I + Q N +N P R RKLLL KREI RL ++ GMTL+P+K+Y +G Sbjct: 61 AWLVNVRIAPFEQGNIWNQDPERTRKLLLKKREITRLENELKGTGMTLIPLKVYIK-RGF 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI L LA+GK +YDKRE+ K+RD +R R+++ N Sbjct: 120 AKILLGLAKGKHDYDKRESIKRRDQERDMKRVMKNFN 156 >gi|147669935|ref|YP_001214753.1| SsrA-binding protein [Dehalococcoides sp. BAV1] gi|146270883|gb|ABQ17875.1| SsrA-binding protein [Dehalococcoides sp. BAV1] Length = 182 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I Sbjct: 34 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 93 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G Sbjct: 94 YECSGHTSHEPMRERKLLMHRKEIVLLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 152 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR+T KRD +R+ R ++ N Sbjct: 153 KKLYDKRDTVTKRDTERELEREVKYRN 179 >gi|322411315|gb|EFY02223.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 155 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 LLAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K +YDKRET K+R+ DR R+++ N Sbjct: 127 KHDYDKRETIKRREQDRDIKRVMKSVN 153 >gi|291519267|emb|CBK74488.1| SsrA-binding protein [Butyrivibrio fibrisolvens 16/4] Length = 155 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 98/153 (64%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K++++N+KA + Y + +EAGI L GTEVKS+R+ + +I +++ +N E+++ Sbjct: 2 NKEGRKLIANNKKAYHEYFMEEEYEAGIELHGTEVKSMRLGQCSIKEAFVRIDNGEMFIY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 ++ Y + N FN P R RKLLL K EI+RL + ++ G T+VP+++Y N GL K+ Sbjct: 62 QMHVNPYEKGNIFNRDPLRPRKLLLHKSEINRLLSKIKESGYTIVPLEVYLN-NGLVKVK 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +ALA+GKK YDKR +K+D R+ R + N Sbjct: 121 IALAKGKKLYDKRADIQKKDMKREAERDFKIRN 153 >gi|117926750|ref|YP_867367.1| SsrA-binding protein [Magnetococcus sp. MC-1] gi|254778367|sp|A0LDB8|SSRP_MAGSM RecName: Full=SsrA-binding protein gi|117610506|gb|ABK45961.1| SsrA-binding protein [Magnetococcus sp. MC-1] Length = 150 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +++++NRKAR+NY I+ EAGIVL GTEVKS+R K+ ++DSYA +E++ N I Sbjct: 4 RLIAENRKARFNYEIIEKIEAGIVLQGTEVKSIRAGKMTLADSYAVVNREELYWLNGQIA 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N NH P R+RKLLL +EI RL V+ G++++P++ Y+ K++L +A+ Sbjct: 64 HYEHGNIHNHEPFRSRKLLLRHKEISRLIGLVKEKGLSIIPLRAYWKGS-KVKLELGIAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR T K+RDW R+K RIL+ + Sbjct: 123 GKKLYDKRATTKERDWQREKQRILKTN 149 >gi|304440568|ref|ZP_07400454.1| SsrA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370944|gb|EFM24564.1| SsrA-binding protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 150 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +KV++ NRKAR+++ I +S+EAGIVL GTEVKSLR K N+ D+Y ++ E+++ +I Sbjct: 3 EKVLATNRKARHDFFIEKSYEAGIVLVGTEVKSLRRGKCNLKDAYVEIKDGEVFVEGMHI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N FN P R RKLLL+K EI +L V + G T+VP+K Y +G K+++ALA Sbjct: 63 SPYEMGNIFNVDPLRRRKLLLNKAEIRKLARDVDQKGFTIVPLKAYL-VRGRVKLEIALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKR+ KRD D + + L+++N Sbjct: 122 RGKKLYDKRDAMAKRDSDMRIRKALKDYN 150 >gi|184154847|ref|YP_001843187.1| SsrA-binding protein [Lactobacillus fermentum IFO 3956] gi|227514414|ref|ZP_03944463.1| SsrA-binding protein SmpB [Lactobacillus fermentum ATCC 14931] gi|260663123|ref|ZP_05864015.1| SsrA-binding protein [Lactobacillus fermentum 28-3-CHN] gi|238692949|sp|B2GAM5|SSRP_LACF3 RecName: Full=SsrA-binding protein gi|183226191|dbj|BAG26707.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956] gi|227087280|gb|EEI22592.1| SsrA-binding protein SmpB [Lactobacillus fermentum ATCC 14931] gi|260552315|gb|EEX25366.1| SsrA-binding protein [Lactobacillus fermentum 28-3-CHN] Length = 157 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 74/158 (46%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ +++ N+KAR++Y + +FEAG+VLTGTE+KS+R +V + D YA F N Sbjct: 1 MAKKNHQGLDANLIAQNKKARHDYTVTDTFEAGLVLTGTEIKSVRARRVTLKDGYAQFHN 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N +I E+ N FNH P RNRKLLL K+E+ +L + G+TLVP+K+Y Sbjct: 61 GELWLMNVHIAEFAGGNIFNHDPLRNRKLLLHKKELKKLQGELTAKGVTLVPLKMYLK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L LAQGK YDKR KKR+ DRQ R+++ + Sbjct: 120 GYAKVLLGLAQGKHEYDKRNAIKKREQDRQIDRVMKHY 157 >gi|225631090|ref|ZP_03787820.1| SsrA-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591215|gb|EEH12367.1| SsrA-binding protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 149 Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats. Identities = 78/146 (53%), Positives = 108/146 (73%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V+++NRKAR+ Y I+ FEAG+VL +EVKSLR KVNISD+Y +N E+WL N +I E Sbjct: 3 VIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y ANR NH P+R RKLLL K+EI++L ++ G+T+VP+ +YFN KG AK +A+ +G Sbjct: 63 YKAANRKNHKPKRERKLLLHKQEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR T K+R+WDR+K R+ + + Sbjct: 123 KKLYDKRATIKQREWDREKSRLSKNN 148 >gi|227505565|ref|ZP_03935614.1| SsrA-binding protein [Corynebacterium striatum ATCC 6940] gi|227197862|gb|EEI77910.1| SsrA-binding protein [Corynebacterium striatum ATCC 6940] Length = 166 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 100/150 (66%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 ++ NR+AR++Y I+ + E G+VL GTE+KS+R K+++ D++AT ++ E+++ N Sbjct: 12 DNNTTLATNRRARHDYKILDTLECGMVLVGTEIKSMREGKISLVDAFATIDDGEVYIRNL 71 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY Q NH P+R RKLLL +REI +L VR TL+P+K+Y G AK +L Sbjct: 72 HIPEYSQGTWTNHSPKRTRKLLLHRREIDKLMGQVRDGNKTLIPLKVYLKD-GRAKCELG 130 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LAQGK++YDKRE K+RD DR+ R L Sbjct: 131 LAQGKQDYDKREAIKRRDQDREITRELGRR 160 >gi|289422950|ref|ZP_06424772.1| SsrA-binding protein [Peptostreptococcus anaerobius 653-L] gi|289156630|gb|EFD05273.1| SsrA-binding protein [Peptostreptococcus anaerobius 653-L] Length = 151 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KV++ N+KAR++Y I +E GI L GTEVKS+R ++N+ + YA+ +N E++L + Sbjct: 3 GIKVLATNKKARHDYFIDEVYECGIELKGTEVKSIRQGRINLKEGYASVDNSEVFLKQVH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q NRFN P R RKLLL K EI +L A G +LVPM++Y G K++L L Sbjct: 63 ISPYEQGNRFNVDPLRVRKLLLHKSEIRKLIGATTIKGYSLVPMRMYLK-NGKVKLELGL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GKK YDKR+ K+D R+ R ++ Sbjct: 122 AKGKKLYDKRQDLAKKDAMRRIERESKDR 150 >gi|167626277|ref|YP_001676777.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189046828|sp|B0TY34|SSRP_FRAP2 RecName: Full=SsrA-binding protein gi|167596278|gb|ABZ86276.1| SsrA (tmRNA)-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 157 Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ ++ N++A ++Y I+ FEAGIVL G EVKS+R KV + DS+ + E W Sbjct: 2 SKHKVSPATIARNKRAFHDYTILEKFEAGIVLQGWEVKSIRAGKVQMIDSHVHIKRGEAW 61 Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N P + NRKLLL++REI ++ + + G T VP+ +Y+ Sbjct: 62 LFNCLITPLLSASTHVVADASANRKLLLNRREIDKIMGRIEQKGFTCVPLAMYWKGP-RV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALAQGKK +DKR+ +K +DW R+K RI ++ Sbjct: 121 KVEIALAQGKKVHDKRQAQKDKDWAREKDRIFKK 154 >gi|310639664|ref|YP_003944422.1| ssra-binding protein [Paenibacillus polymyxa SC2] gi|309244614|gb|ADO54181.1| SsrA-binding protein [Paenibacillus polymyxa SC2] Length = 159 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 77/159 (48%), Positives = 102/159 (64%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K+ G KV++ N+KA ++Y I ++EAG+VLTGTE+KSLR + NISD++AT N Sbjct: 1 MGKKADG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSLRNGRSNISDAFATIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EI + N +I + Q NR N P R RKLLL K +I +L +++G T+VP+KIY Sbjct: 57 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLIGLSKQEGYTIVPLKIYVR- 115 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GKK YDKRET KRD R R LRE Sbjct: 116 NGYAKLLLGLGRGKKQYDKRETAAKRDAQRDIQRALREK 154 >gi|227486858|ref|ZP_03917174.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227541979|ref|ZP_03972028.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227093184|gb|EEI28496.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227182422|gb|EEI63394.1| SsrA-binding protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 163 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + N VV+ NR+AR++Y+I+ ++E GI L GTE+K++R VN++D++A E+ Sbjct: 1 MGKKKKKNAGGNVVATNRRARHDYNILETYECGISLVGTEIKAIREGHVNLADAFAIIEH 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N IPEY NH P R+RKLLL ++EI L VR TLVP+K+YF Sbjct: 61 GEVWLRNLNIPEYSLGTWTNHRPMRHRKLLLHRKEIDSLAGKVRDGNKTLVPLKLYFKD- 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K +LALA+GK++YDKRE K+R +R+ R L Sbjct: 120 GLLKAELALAEGKQDYDKREDIKRRTEEREVVRELGRR 157 >gi|307701719|ref|ZP_07638733.1| SsrA-binding protein [Mobiluncus mulieris FB024-16] gi|307612977|gb|EFN92232.1| SsrA-binding protein [Mobiluncus mulieris FB024-16] Length = 165 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 N+KA ++Y + EAG+ LTGTEVK+LR+ + ++S+++ + E WL + IPEY Sbjct: 19 RNKKAAHDYFLEDRLEAGLSLTGTEVKALRMGRASLSEAWVEIDRGEAWLQGANIPEYFY 78 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + NH P+R R+LLL KREI RL V G T+VP+++YF G AK+++ALA+GK+ Sbjct: 79 GSWTNHSPKRKRRLLLHKREILRLENGVAAKGYTVVPVELYFIG-GRAKVEIALARGKQE 137 Query: 136 YDKRETEKKRDWDRQKHRILREHN 159 +DKR+T ++R+ +R+ R LR+ N Sbjct: 138 WDKRQTIREREDNREAQRALRDAN 161 >gi|315223049|ref|ZP_07864928.1| SsrA-binding protein [Streptococcus anginosus F0211] gi|315187999|gb|EFU21735.1| SsrA-binding protein [Streptococcus anginosus F0211] Length = 155 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + E G+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIETGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQDPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R ++ +N Sbjct: 126 GKHDYDKRESIKRREQNRDIARTMKAYN 153 >gi|114769602|ref|ZP_01447212.1| SsrA-binding protein [alpha proteobacterium HTCC2255] gi|114549307|gb|EAU52189.1| SsrA-binding protein [alpha proteobacterium HTCC2255] gi|297184275|gb|ADI20393.1| tmRNA-binding protein [uncultured alpha proteobacterium EB080_L27A02] gi|297184332|gb|ADI20449.1| tmRNA-binding protein [uncultured alpha proteobacterium EB080_L43F08] Length = 158 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 82/159 (51%), Positives = 112/159 (70%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + K++ +NR+ARY+Y + E GI+L G+EVK+LR+ NI++SY EN Sbjct: 1 MAKK-KTPDNNKMIVENRRARYDYAVEDVLECGIILMGSEVKALRIGSANIAESYVDIEN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL NSYI Y QA F H RR RKLL+SK++I +L+ A R+ MT+V +K+YFN K Sbjct: 60 GELWLINSYISLYTQAQNFGHEERRRRKLLVSKKQISKLWQAKGREAMTIVALKMYFNDK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+ + A+GKK DKRETEKKRDW+RQK R+LREH+ Sbjct: 120 GKVKLLIGTAKGKKQSDKRETEKKRDWNRQKSRLLREHS 158 >gi|311031850|ref|ZP_07709940.1| SsrA-binding protein [Bacillus sp. m3-13] Length = 155 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV+S N+KA ++Y I +++E G+VL GTE+KS+R +VN+ DS+A +N E++L N +I Sbjct: 7 KVISTNKKANHDYFIEQTYETGMVLQGTEIKSMRAGRVNLKDSFARVQNGEVFLHNLHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL +++I++L + +G LVP+KIY G AK+ + L + Sbjct: 67 PYEQGNRYNHDPLRTRKLLLHRKQINQLIGLTKEEGYALVPLKIYLK-NGYAKLLIGLGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR+ KK++ R R RE Sbjct: 126 GKKKYDKRDDLKKKEAKRDIERAFRER 152 >gi|171741046|ref|ZP_02916853.1| hypothetical protein BIFDEN_00112 [Bifidobacterium dentium ATCC 27678] gi|283455569|ref|YP_003360133.1| smpB SsrA-binding protein [Bifidobacterium dentium Bd1] gi|306823391|ref|ZP_07456766.1| SsrA-binding protein [Bifidobacterium dentium ATCC 27679] gi|309802588|ref|ZP_07696692.1| SsrA-binding protein [Bifidobacterium dentium JCVIHMP022] gi|171276660|gb|EDT44321.1| hypothetical protein BIFDEN_00112 [Bifidobacterium dentium ATCC 27678] gi|283102203|gb|ADB09309.1| smpB SsrA-binding protein [Bifidobacterium dentium Bd1] gi|304553098|gb|EFM41010.1| SsrA-binding protein [Bifidobacterium dentium ATCC 27679] gi|308220652|gb|EFO76960.1| SsrA-binding protein [Bifidobacterium dentium JCVIHMP022] Length = 159 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65 K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+ EIWL Sbjct: 3 KEQGTKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDRRGEIWL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + IPEYL NH P+R RKLLL +I +L G T+VP+ +YF G K Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHAEQIAKLARQSEAKGYTIVPLSLYFKD-GRVKA 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 122 EIALARGKKEFDKRQALREEQDKREALRAMRYAN 155 >gi|261363744|ref|ZP_05976627.1| SsrA-binding protein [Neisseria mucosa ATCC 25996] gi|288568318|gb|EFC89878.1| SsrA-binding protein [Neisseria mucosa ATCC 25996] Length = 148 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 90/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R +V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDQLEAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI++L R G T+VP+ ++F +G K+++ LA+G Sbjct: 63 PTASTHVKPDPVRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHFT-RGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146 >gi|146276180|ref|YP_001166339.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17025] gi|187629781|sp|A4WNS0|SSRP_RHOS5 RecName: Full=SsrA-binding protein gi|145554421|gb|ABP69034.1| SsrA-binding protein [Rhodobacter sphaeroides ATCC 17025] Length = 157 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 114/157 (72%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + +P K++++NR+AR++Y I EAGI+L G+EVKSLR NI +SYA+ EN E Sbjct: 1 MVKHSDPNSKLIAENRRARFDYFIEEEIEAGIILMGSEVKSLRQGGSNIGESYASVENGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL N YI YLQA + H RR RKLL+S+RE+ RL+ A R+GMT+VP+++YFN +G+ Sbjct: 61 LWLINGYIAPYLQAKTWGHEERRKRKLLVSRRELARLWNATAREGMTIVPIRMYFNDRGI 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK DKR TE KRDW R+K R+L++H+ Sbjct: 121 VKLKIGIAKGKKLSDKRATEAKRDWGREKQRLLKQHS 157 >gi|189182991|ref|YP_001936776.1| SsrA-binding protein [Orientia tsutsugamushi str. Ikeda] gi|238692231|sp|B3CQP3|SSRP_ORITI RecName: Full=SsrA-binding protein gi|189179762|dbj|BAG39542.1| small protein B homolog [Orientia tsutsugamushi str. Ikeda] Length = 153 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 79/147 (53%), Positives = 106/147 (72%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ NRKA++NY I EAGIVL G+E+KS+R KV+I DSYA ++EI+L NSYI Sbjct: 6 KIVAQNRKAKFNYFIEDKMEAGIVLQGSELKSIRSGKVSIEDSYAAESSNEIFLYNSYIG 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY QANRFNH PRR RKLLL ++EI ++ + G TLV + IYFN+K K++L LA+ Sbjct: 66 EYKQANRFNHVPRRVRKLLLHRKEIQKIIGKLSVQGCTLVALSIYFNSKNKVKVELGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++W +Q+ RI+R Sbjct: 126 GKKQYDKRYAIKEQEWKKQQARIMRNK 152 >gi|320547270|ref|ZP_08041562.1| SsrA-binding protein [Streptococcus equinus ATCC 9812] gi|320448074|gb|EFW88825.1| SsrA-binding protein [Streptococcus equinus ATCC 9812] Length = 155 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 73/148 (49%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQEPERTRKLLLKKREIENLSNELKGTGMTLVPLKVYLK-NGFAKVLLGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRET K+R+ DR R ++ N Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153 >gi|168333924|ref|ZP_02692156.1| SsrA-binding protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 155 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 95/153 (62%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K+++ N+KA ++Y I ++EAG+VL GTEVKS+R +I +S+ +N E ++ Sbjct: 3 KTGAYKLIAQNKKAYHDYFIDETYEAGMVLVGTEVKSIRCGSGSIKESFIRIQNGEAFVF 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + N FN P R RKLLL K++I +L A+ GMT+VP+K+Y L K++ Sbjct: 63 NMHINPYEKGNIFNKEPLRTRKLLLHKKQITKLLGAISTKGMTIVPLKVYIKDS-LVKME 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK +DKR+ K+D RQ R + N Sbjct: 122 IGLARGKKLHDKRQDIAKKDVRRQNERDFKIKN 154 >gi|237786015|ref|YP_002906720.1| SsrA-binding protein [Corynebacterium kroppenstedtii DSM 44385] gi|259511417|sp|C4LK22|SSRP_CORK4 RecName: Full=SsrA-binding protein gi|237758927|gb|ACR18177.1| tmRNA-binding protein [Corynebacterium kroppenstedtii DSM 44385] Length = 183 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 106/158 (67%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKK-VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 S S+ N K+ VV+ NR+AR++Y I+ ++EAGI L GTEVKSLR K ++ DS+AT ++ Sbjct: 21 SKVSKKNANKRLVVATNRRARHDYTILDTWEAGIQLVGTEVKSLREGKASLIDSFATIDD 80 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL + +IPEY + + NH PRR RKLLL + EI + VR TL+P+ +YF+ Sbjct: 81 GEVWLRHLHIPEYSKGHWTNHSPRRTRKLLLHRNEIDSIMGKVRDGNNTLIPLSLYFSD- 139 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LAL +GK++YD+R+ K+R +R+ R L Sbjct: 140 GKLKVELALGRGKQDYDRRQDIKRRTEEREATRALGRR 177 >gi|294790680|ref|ZP_06755838.1| SsrA-binding protein [Scardovia inopinata F0304] gi|294458577|gb|EFG26930.1| SsrA-binding protein [Scardovia inopinata F0304] Length = 160 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 99/160 (61%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + +++ NR+AR++Y I S EAG+VL GTEVKSLR + ++S ++ + + Sbjct: 1 MTKNPGQDE-IHMIATNRRARHDYTIENSLEAGLVLQGTEVKSLREGRASLSQAFVSIDP 59 Query: 61 DE-IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +WL + IPEYL NH P+R RKLLL +I RL + G T++P+ +YF Sbjct: 60 HHQVWLEGANIPEYLNGTWMNHAPKRKRKLLLHADQIARLERGIEAKGYTIIPLTLYFKQ 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK+++ALA+GK+ YDKR+ +K DR+ R +R HN Sbjct: 120 -GRAKVEIALARGKREYDKRQALRKAQDDREALRQMRLHN 158 >gi|220905060|ref|YP_002480372.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869359|gb|ACL49694.1| SsrA-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 151 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 3/153 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P ++ N+KAR+ Y + EAG+VLTG EVKS+R KVN DSY F E Sbjct: 1 MSQKTSPS--TIAVNKKARHLYELSEFTEAGVVLTGPEVKSIRAGKVNFVDSYVDFRRGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL + +I Y A P R RKLLL +REI +L V + G+T+VP+++Y +G Sbjct: 59 AWLLSLHIAPYSNAGYAPQEPERARKLLLHQREIAKLSGIVAQKGLTVVPVRLYLK-RGK 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 K+++A+ +GKK +D RE+ K+R +R R L Sbjct: 118 IKVEIAVGRGKKLHDHRESLKRRAEERDLAREL 150 >gi|209695899|ref|YP_002263829.1| SsrA-binding protein [Aliivibrio salmonicida LFI1238] gi|226706518|sp|B6EKA9|SSRP_ALISL RecName: Full=SsrA-binding protein gi|208009852|emb|CAQ80163.1| SsrA (tmRNA)-binding protein (small protein B) [Aliivibrio salmonicida LFI1238] Length = 161 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N++AR+ Y I EAG+ L G EVKSLR KVNI++SY Sbjct: 1 MAKKKSKDKAGSNTIAMNKQARHEYFIEDEIEAGVELQGWEVKSLRSGKVNIAESYVYVR 60 Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + EI+++ I + P R RKLL+S++EI L V R+GMTLV +Y+ Sbjct: 61 DGEIFISGMNITPLQAASTHVVANPTRVRKLLMSRKEIDNLIGRVNREGMTLVATTMYW- 119 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + AKI + +A+GKK +DKR K++DW+R K RI++ Sbjct: 120 VRSWAKIKVGVAKGKKLHDKRTDSKEKDWNRDKARIMK 157 >gi|299536244|ref|ZP_07049557.1| SsrA-binding protein [Lysinibacillus fusiformis ZC1] gi|298728230|gb|EFI68792.1| SsrA-binding protein [Lysinibacillus fusiformis ZC1] Length = 155 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I + EAG+VLTGTE+KS+R KV + DS+ N E W+ N Sbjct: 3 KGSGKVLAQNKKAGHDYFIEETIEAGMVLTGTEIKSIRAGKVQLKDSFVRVRNGEAWINN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 ++ + Q NRFNH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ + Sbjct: 63 MHVSAFEQGNRFNHDPLRTRKLLLHKKQIGELVGAVKRDGYTIVPLKMYIKD-GYAKLLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + +GKK+YDKR +K++ R+ R + N Sbjct: 122 GIGKGKKDYDKRSDMRKKEAKREMERAFKAKN 153 >gi|212703532|ref|ZP_03311660.1| hypothetical protein DESPIG_01577 [Desulfovibrio piger ATCC 29098] gi|212673032|gb|EEB33515.1| hypothetical protein DESPIG_01577 [Desulfovibrio piger ATCC 29098] Length = 151 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 63/155 (40%), Positives = 91/155 (58%), Gaps = 5/155 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K P ++ N+KAR+ Y + EAGI LTG EVKS+R K+N DSY F + Sbjct: 1 MSKK----PSPSTIAVNKKARHLYELSDFVEAGISLTGPEVKSIRAGKINFLDSYVDFRD 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E ++ + +I Y A P R R+LLL EI ++ A V + G+T+VP+++YF Sbjct: 57 GEAFVLSLHIAPYDNAGYVPQDPDRPRRLLLHAAEIRQMAARVEQKGLTVVPVRMYFKQ- 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G K+++AL +GKK +D RET K+R +R R L Sbjct: 116 GKVKMEIALGRGKKLFDHRETLKRRAEERDAARDL 150 >gi|221134852|ref|ZP_03561155.1| SsrA-binding protein [Glaciecola sp. HTCC2999] Length = 158 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 98/157 (62%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K NP ++ N+KA++ +H+ FEAG+ L G EVKS+R KVN+SDSY +N Sbjct: 1 MSKKKSKNPTG-TIALNKKAKHEFHLTDKFEAGMELQGWEVKSIRAGKVNLSDSYVFVKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++TN I Q + P R RKLLL +REI +L + R G+T+V +Y+ A Sbjct: 60 GEAFVTNITIQPLSQASTHVICDPDRTRKLLLKRREIEQLMGGLDRQGLTIVATAMYWKA 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 K+++ LA+GK+ +DKR+T K RDW RQK R+++ Sbjct: 120 -CWVKLEICLAKGKQAHDKRDTIKDRDWARQKERMMK 155 >gi|148984719|ref|ZP_01817987.1| SsrA-binding protein [Streptococcus pneumoniae SP3-BS71] gi|225856634|ref|YP_002738145.1| SsrA-binding protein [Streptococcus pneumoniae P1031] gi|254778385|sp|C1CK57|SSRP_STRZP RecName: Full=SsrA-binding protein gi|147923110|gb|EDK74225.1| SsrA-binding protein [Streptococcus pneumoniae SP3-BS71] gi|225724684|gb|ACO20536.1| SsrA-binding protein [Streptococcus pneumoniae P1031] gi|301799951|emb|CBW32534.1| SsrA-binding protein [Streptococcus pneumoniae OXC141] Length = 155 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL KR+I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKRQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|139474266|ref|YP_001128982.1| SsrA-binding protein [Streptococcus pyogenes str. Manfredo] gi|166223464|sp|A2RFZ7|SSRP_STRPG RecName: Full=SsrA-binding protein gi|134272513|emb|CAM30776.1| SsrA-binding protein [Streptococcus pyogenes str. Manfredo] Length = 155 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRATRIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K +YDKRET K+RD +R + ++ +N Sbjct: 127 KHDYDKRETIKRRDQERDIKKQMKHYN 153 >gi|254489763|ref|ZP_05102958.1| SsrA-binding protein [Methylophaga thiooxidans DMS010] gi|224464848|gb|EEF81102.1| SsrA-binding protein [Methylophaga thiooxydans DMS010] Length = 161 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 97/147 (65%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRK R+++ I FEAG+VL G EVKSLR +V +++SY N E WL N+ I Sbjct: 16 TIAVNRKVRHDFFIEERFEAGLVLEGWEVKSLRDGRVQLNESYVHVRNGEAWLANALITA 75 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P+R+RKLLL ++E+ +L AV R G TLVP+ +Y+ KG AKI +ALA+ Sbjct: 76 LKTASTHIKPEPQRDRKLLLHRKELGKLIGAVDRKGYTLVPLNMYWK-KGKAKIQIALAK 134 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK+ +DKR TEK+RDW+R K RI++ Sbjct: 135 GKQLHDKRATEKERDWNRDKARIMKIR 161 >gi|71083750|ref|YP_266470.1| SsrA-binding protein [Candidatus Pelagibacter ubique HTCC1062] gi|91763214|ref|ZP_01265178.1| smpB protein [Candidatus Pelagibacter ubique HTCC1002] gi|123646464|sp|Q4FLS2|SSRP_PELUB RecName: Full=SsrA-binding protein gi|71062863|gb|AAZ21866.1| smpB protein [Candidatus Pelagibacter ubique HTCC1062] gi|91717627|gb|EAS84278.1| smpB protein [Candidatus Pelagibacter ubique HTCC1002] Length = 156 Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats. Identities = 79/157 (50%), Positives = 112/157 (71%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + NP K++ NRKA +N+ EAGIVL G+E+KS+R KVNI+DSYA ++ E Sbjct: 1 MNKKANPGLKIICLNRKASFNFFFEDLIEAGIVLKGSEIKSIRDGKVNIADSYAVEKDGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I L NS+I + QA+ NH P RKLLL+K+EI++L ++RDG TLVP K+YF KG Sbjct: 61 IVLINSHIAAFKQASYSNHNPTDERKLLLNKKEINKLIGKMQRDGFTLVPTKMYFK-KGK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI++A+A+GKK +DKR T+K RDW+R+K R +R+ + Sbjct: 120 AKIEIAVAKGKKQFDKRATKKNRDWNREKARHIRKSS 156 >gi|237666816|ref|ZP_04526801.1| SsrA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658015|gb|EEP55570.1| SsrA-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 156 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + +++NRKAR++Y + + EAG+VL GTEVKS+R +VN+ D YA N EI++ Sbjct: 3 RKKNQNSLAENRKARHDYFVEEAMEAGLVLVGTEVKSIRKGRVNLKDCYADIYNGEIYIK 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y Q N FN P R RKLLL K EI RL V RDG TL+P+ +Y G K+ Sbjct: 63 NMHISPYEQGNIFNVDPLRERKLLLHKDEIRRLDGLVSRDGYTLIPLSLYLKE-GKVKVA 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L + +GKKNYDKR+ ++ R R ++E + Sbjct: 122 LGVCKGKKNYDKRDAMIEKAQKRDIDRAMKERS 154 >gi|291280255|ref|YP_003497090.1| ssrA RNA (tmRNA)-binding protein [Deferribacter desulfuricans SSM1] gi|290754957|dbj|BAI81334.1| ssrA RNA (tmRNA)-binding protein [Deferribacter desulfuricans SSM1] Length = 151 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I+ +EAGIVL GTEVKS + ++N+ DS+ N E +L N +I Sbjct: 2 KVLATNKKAYHDYEILEKYEAGIVLKGTEVKSAKNGRINLRDSFIRISNGEAFLLNCHIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N NH P R RKLLL KREI RL V+ G+TLVP+++Y L K+++ALA+ Sbjct: 62 PYEQGNIMNHDPTRTRKLLLHKREIERLAGKVQEKGLTLVPLRVYLK-NNLVKVEVALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRE KK+D DR+ R L+ Sbjct: 121 GKKLHDKREAIKKKDLDREISRTLKNK 147 >gi|94993824|ref|YP_601922.1| SsrA-binding protein [Streptococcus pyogenes MGAS10750] gi|166223463|sp|Q1J7Y3|SSRP_STRPF RecName: Full=SsrA-binding protein gi|94547332|gb|ABF37378.1| SsrA-binding protein [Streptococcus pyogenes MGAS10750] Length = 155 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K +YDKRET K+RD +R + ++ +N Sbjct: 127 KHDYDKRETIKRRDQERDIKKQMKHYN 153 >gi|149919583|ref|ZP_01908062.1| SsrA-binding protein [Plesiocystis pacifica SIR-1] gi|149819526|gb|EDM78954.1| SsrA-binding protein [Plesiocystis pacifica SIR-1] Length = 159 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +V+ +NRKA ++Y I+ E+G+ L G+EVKS+R ++++ ++Y F DE++L ++ Sbjct: 11 GDEVLEENRKATHDYEILEELESGVALQGSEVKSIRDGRISLKEAYCQFRGDELFLLQAH 70 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I E+ QA+ NH P R RKLLL +RE+ +L+ AV+ G+T+VP+ +Y ++ KI + L Sbjct: 71 IAEFPQAHARNHPPLRARKLLLHRRELDKLHDAVKTQGLTIVPLVVYLKSR-RIKILIGL 129 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR K+RD R+ R LREH Sbjct: 130 GRGKKVHDKRAAIKERDQKREMQRALREH 158 >gi|15674609|ref|NP_268783.1| SsrA-binding protein [Streptococcus pyogenes M1 GAS] gi|50913788|ref|YP_059760.1| SsrA-binding protein [Streptococcus pyogenes MGAS10394] gi|56808171|ref|ZP_00365952.1| COG0691: tmRNA-binding protein [Streptococcus pyogenes M49 591] gi|71903069|ref|YP_279872.1| SsrA-binding protein [Streptococcus pyogenes MGAS6180] gi|71910228|ref|YP_281778.1| SsrA-binding protein [Streptococcus pyogenes MGAS5005] gi|94989925|ref|YP_598025.1| SsrA-binding protein [Streptococcus pyogenes MGAS10270] gi|209558979|ref|YP_002285451.1| SsrA-binding protein [Streptococcus pyogenes NZ131] gi|22096175|sp|Q9A126|SSRP_STRP1 RecName: Full=SsrA-binding protein gi|61216439|sp|Q5XDD6|SSRP_STRP6 RecName: Full=SsrA-binding protein gi|123640339|sp|Q48UT9|SSRP_STRPM RecName: Full=SsrA-binding protein gi|166223462|sp|Q1JI42|SSRP_STRPD RecName: Full=SsrA-binding protein gi|226706535|sp|B5XK94|SSRP_STRPZ RecName: Full=SsrA-binding protein gi|13621720|gb|AAK33504.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS] gi|50902862|gb|AAT86577.1| SsrA-binding protein [Streptococcus pyogenes MGAS10394] gi|71802164|gb|AAX71517.1| ssrA-binding protein [Streptococcus pyogenes MGAS6180] gi|71853010|gb|AAZ51033.1| ssrA-binding protein [Streptococcus pyogenes MGAS5005] gi|94543433|gb|ABF33481.1| SsrA-binding protein [Streptococcus pyogenes MGAS10270] gi|209540180|gb|ACI60756.1| SsrA-binding protein [Streptococcus pyogenes NZ131] Length = 155 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGSGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K YDKRET K+RD +R + ++ +N Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153 >gi|241668718|ref|ZP_04756296.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877250|ref|ZP_05249960.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843271|gb|EET21685.1| SsrA-binding protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 157 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 91/154 (59%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ ++ N++A ++Y I+ FEAGIVL G EVKS+R KV + DS+ + E W Sbjct: 2 SKHKVSPATIARNKRAFHDYTILEKFEAGIVLQGWEVKSIRAGKVQMIDSHVHIKRGEAW 61 Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N P + NRKLLL++REI ++ + + G T VP+ +Y+ Sbjct: 62 LFNCLITPLLSASTHVVADASANRKLLLNRREIDKIMGRIEQKGFTCVPLAMYWKGP-RV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALAQGKK +DKR+ +K +DW R+K RI ++ Sbjct: 121 KVEIALAQGKKVHDKRQVQKDKDWAREKDRIFKK 154 >gi|242373019|ref|ZP_04818593.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W1] gi|242349173|gb|EES40774.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W1] Length = 156 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 100/158 (63%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA + Sbjct: 1 MAKKKSKSPG--TLAENRKARHDYNIEDTIEAGIALRGTEIKSIRRGSANLKDSYAQVKR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + NRFNH P R+RKLLL KREI +L R G +L+P+K+Y Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREILKLGERTREIGYSLIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKK +DKR+ K++ R R +++ Sbjct: 118 GQCKVLLGVARGKKLHDKRQALKEKAMKRDIDRAVKDR 155 >gi|260904326|ref|ZP_05912648.1| SsrA-binding protein [Brevibacterium linens BL2] Length = 156 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KKV++ NRKAR++Y I ++EAG+VL+GTEVKSLR + +++D +A +E WL Sbjct: 3 KETGKKVIARNRKARHDYLIEDTWEAGLVLSGTEVKSLREGRASLTDGFALIFQNEAWLE 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 YIPEY Q NH RR RKLLL + EI RL V+ G TL+P+++YF+ K++ Sbjct: 63 GVYIPEYAQGTWTNHTARRRRKLLLHRDEILRLSQKVKESGRTLIPLELYFDGS-RVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +ALA+GK+ +DKR+ ++ R+ R ++ Sbjct: 122 IALAKGKREWDKRQALREAQDKREAERAIKSK 153 >gi|21909889|ref|NP_664157.1| SsrA-binding protein [Streptococcus pyogenes MGAS315] gi|28896412|ref|NP_802762.1| SsrA-binding protein [Streptococcus pyogenes SSI-1] gi|25009278|sp|Q8K8C6|SSRP_STRP3 RecName: Full=SsrA-binding protein gi|21904076|gb|AAM78960.1| putative tmRNA-binding protein [Streptococcus pyogenes MGAS315] gi|28811663|dbj|BAC64595.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 155 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLENELKGSGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K YDKRET K+RD +R + ++ +N Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153 >gi|37521063|ref|NP_924440.1| SsrA-binding protein [Gloeobacter violaceus PCC 7421] gi|39932270|sp|Q7NKI3|SSRP_GLOVI RecName: Full=SsrA-binding protein gi|35212059|dbj|BAC89435.1| tmRNA-binding protein [Gloeobacter violaceus PCC 7421] Length = 152 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G +K++ DNRKAR+ Y I+ ++ AG+ L GTEVK++R + N++D++A + E+ L Sbjct: 3 GEKTRKILVDNRKARFEYEILETYSAGLALLGTEVKAIRAGRANLNDAFARIHHGEVLLY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N I A F H P R RKLLL +REIH+L V G+TL+P+K+Y K+D Sbjct: 63 NMNISPLQTAGAFAHDPLRTRKLLLKRREIHKLTGRVEEKGLTLIPLKLYLEGS-WVKLD 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L LA+GKK YDKRE KKR+ R R +R Sbjct: 122 LGLARGKKLYDKREDIKKRETKRDIERAMRR 152 >gi|113971111|ref|YP_734904.1| SsrA-binding protein [Shewanella sp. MR-4] gi|117921392|ref|YP_870584.1| SsrA-binding protein [Shewanella sp. ANA-3] gi|123324816|sp|Q0HGH0|SSRP_SHESM RecName: Full=SsrA-binding protein gi|166223455|sp|A0KZF9|SSRP_SHESA RecName: Full=SsrA-binding protein gi|113885795|gb|ABI39847.1| SsrA-binding protein [Shewanella sp. MR-4] gi|117613724|gb|ABK49178.1| SsrA-binding protein [Shewanella sp. ANA-3] Length = 163 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K+ ++ N++A + Y EAGI L G EVKS+R+ KVN+SD Y +N Sbjct: 1 MVKKNSKKAAPATIARNKRATFEYRFEEKMEAGISLMGWEVKSIRMGKVNLSDCYVFLKN 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+ Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPIRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K R+W+ +K R++++ Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158 >gi|114562272|ref|YP_749785.1| SsrA-binding protein [Shewanella frigidimarina NCIMB 400] gi|122300438|sp|Q085W8|SSRP_SHEFN RecName: Full=SsrA-binding protein gi|114333565|gb|ABI70947.1| SsrA-binding protein [Shewanella frigidimarina NCIMB 400] Length = 162 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 1/155 (0%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + ++ N++A + Y I EAG+ L G EVKS+R+ KVN+SD Y + E Sbjct: 3 KKKSANASASIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYIKEGEA 62 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++ I + P R +KLLL + EI +L + R G TLVP+ +Y+ Sbjct: 63 FMHGCTIQPLNTASTHVICDPIRTKKLLLKRSEIDKLAGLIERQGYTLVPLSMYWRKGAW 122 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K+R+W +K R++++ Sbjct: 123 VKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKK 157 >gi|30248447|ref|NP_840517.1| SsrA-binding protein [Nitrosomonas europaea ATCC 19718] gi|39932361|sp|Q82X65|SSRP_NITEU RecName: Full=SsrA-binding protein gi|30138333|emb|CAD84341.1| SmpB protein [Nitrosomonas europaea ATCC 19718] Length = 151 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA ++Y I +EAGIVL G EVK++R + + ++Y E++L S+I Sbjct: 3 IVQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRAGRAQLKEAYILIRKGELFLIGSHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P + RKLLL +I L V R G TL+P+ +++ + G K+++ LA+G Sbjct: 63 ATASTHVNPDPVKTRKLLLHASQIRELIGKVERAGYTLIPLDMHYKS-GRIKLEIGLARG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRETEK+++W+R K R+LR Sbjct: 122 KKQYDKRETEKRKEWERDKQRLLRIR 147 >gi|284040495|ref|YP_003390425.1| SsrA-binding protein [Spirosoma linguale DSM 74] gi|283819788|gb|ADB41626.1| SsrA-binding protein [Spirosoma linguale DSM 74] Length = 153 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 100/144 (69%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K+V NR+A + Y + ++ AGIVLTGTE+KS+R KVN+ D+Y DE+++ I Sbjct: 8 KQVDIRNRRASFEYSFLETYTAGIVLTGTEIKSVRQGKVNLQDAYCLIHGDELFIRQMSI 67 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + +NH P R+RKLLL+KREI RL ++ G+T+VP++++ + +G AK+++ALA Sbjct: 68 SIYTEGTHYNHEPLRDRKLLLTKREIRRLTEKLKDQGLTIVPIRMFTSERGFAKVEIALA 127 Query: 131 QGKKNYDKRETEKKRDWDRQKHRI 154 +GKK YDKR++ K+RD +R+ R Sbjct: 128 KGKKLYDKRDSIKERDVEREMQRE 151 >gi|194333541|ref|YP_002015401.1| SsrA-binding protein [Prosthecochloris aestuarii DSM 271] gi|194311359|gb|ACF45754.1| SsrA-binding protein [Prosthecochloris aestuarii DSM 271] Length = 157 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + P NRKAR+ + I+ + AGI L G+EVKS+R+ + ++++SYA Sbjct: 1 MA-KQQQKPQYVSTILNRKARHEFTILETVVAGIELQGSEVKSIRLGRASLNESYAIIHR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N I Y P+R+RKLLL K EI ++ + + G+TL+P+K +FN++ Sbjct: 60 GEVWLENMQITPYEHNTLELPDPKRSRKLLLQKSEIIKIQSKLHEKGLTLIPLKAFFNSR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ KI+L +A+GKK +DKRE+ K RD +RQ R+ ++ Sbjct: 120 GMLKIELGIAKGKKLFDKRESIKNRDAERQLQRLKHQY 157 >gi|88704214|ref|ZP_01101928.1| SsrA-binding protein [Congregibacter litoralis KT71] gi|88701265|gb|EAQ98370.1| SsrA-binding protein [Congregibacter litoralis KT71] Length = 163 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 100/160 (62%), Gaps = 4/160 (2%) Query: 1 MSL--KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + N + N++AR++YH++ SFEAG+ LTG EVK+LR K ++DSY Sbjct: 1 MAAMGKKKSNTADTTIVQNKRARFDYHLLESFEAGVALTGWEVKALRAGKAQLTDSYVMM 60 Query: 59 ENDEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 ++ E +L S I + + P R RKLLL++RE+ R+ AAV G T V K+Y+ Sbjct: 61 KDGEAFLLGSQITPLATASTHYVTDPTRTRKLLLNRRELARILAAVSAKGQTCVCTKLYW 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K +ALA GK+++DKR+T+K+R+W QK RI+R+ Sbjct: 121 KGH-LVKAAIALAHGKQSHDKRQTQKEREWGVQKQRIMRD 159 >gi|162147664|ref|YP_001602125.1| SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5] gi|187611479|sp|A9HIW5|SSRP_GLUDA RecName: Full=SsrA-binding protein gi|161786241|emb|CAP55823.1| putative SsrA-binding protein [Gluconacetobacter diazotrophicus PAl 5] Length = 154 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 98/146 (67%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + + NRK R+NY I+ + EAG+VL G EVKSLR+ + I+++YA + EIWL NSYIPE Sbjct: 6 IAAQNRKGRFNYTILETLEAGMVLKGPEVKSLRLGRATINEAYAGDRDGEIWLFNSYIPE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y R RKLLL ++++ +L AV RDG+TLVP+ I+FNA+G+AK+ L + +G Sbjct: 66 YQGGVLSRFETRAPRKLLLHRKQVDKLLGAVARDGVTLVPLDIHFNARGVAKVTLGIGEG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 +K DKR+ RDW R K R+LR Sbjct: 126 RKKADKRQAIADRDWQRDKARLLRNK 151 >gi|187631663|sp|Q12PV1|SSRP_SHEDO RecName: Full=SsrA-binding protein Length = 165 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M K ++ N++A + Y I EAG+ L G EVKS+R+ KVN+SD Y Sbjct: 1 MVKKNSKSAKNASATIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYI 60 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E ++ I + P R +KLLL + EI +L + R G TL+P+ +Y+ Sbjct: 61 KEGEAFMHGCTIQPLNTASTHVVCDPIRTKKLLLKRSEIDKLAGLIERQGYTLIPLSMYW 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K+R+W +K R++++ Sbjct: 121 RKGAWVKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKK 160 >gi|225026079|ref|ZP_03715271.1| hypothetical protein EUBHAL_00320 [Eubacterium hallii DSM 3353] gi|224956596|gb|EEG37805.1| hypothetical protein EUBHAL_00320 [Eubacterium hallii DSM 3353] Length = 171 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 97/160 (60%), Gaps = 6/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA ++Y I +EAGI L GTEVKSLR+ + +I +S+ T N Sbjct: 15 MAK----SEGIKLIANNKKAYHDYFIDEKYEAGIALHGTEVKSLRMGRCSIKESFVTISN 70 Query: 61 DEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 L N +I Y + N FN P R RKLLL K EI++L ++ G TL+P+K+YF Sbjct: 71 KGEILINHMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLAGQIKMKGYTLMPLKVYFKG 130 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ LA+GKK YDKR+ K+D R+ R + N Sbjct: 131 S-LVKVEIGLARGKKLYDKRQDIAKKDAKREVERDFKIRN 169 >gi|24373047|ref|NP_717089.1| SsrA-binding protein [Shewanella oneidensis MR-1] gi|114048345|ref|YP_738895.1| SsrA-binding protein [Shewanella sp. MR-7] gi|30173292|sp|Q8EGW8|SSRP_SHEON RecName: Full=SsrA-binding protein gi|123030424|sp|Q0HSR7|SSRP_SHESR RecName: Full=SsrA-binding protein gi|24347220|gb|AAN54534.1|AE015592_7 SsrA-binding protein [Shewanella oneidensis MR-1] gi|113889787|gb|ABI43838.1| SsrA-binding protein [Shewanella sp. MR-7] Length = 163 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K+ ++ N++A + Y EAG+ L G EVKS+R+ KVN+SD Y +N Sbjct: 1 MVKKNSKKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+ Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPIRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K R+W+ +K R++++ Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158 >gi|255067641|ref|ZP_05319496.1| SsrA-binding protein [Neisseria sicca ATCC 29256] gi|255048115|gb|EET43579.1| SsrA-binding protein [Neisseria sicca ATCC 29256] Length = 148 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 90/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R +V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDQLEAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI++L R G T+VP+ ++F +G K+++ LA+G Sbjct: 63 PTASTHVKPDPVRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHFT-RGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146 >gi|229495301|ref|ZP_04389036.1| SsrA-binding protein [Porphyromonas endodontalis ATCC 35406] gi|229317744|gb|EEN83642.1| SsrA-binding protein [Porphyromonas endodontalis ATCC 35406] Length = 156 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++V NR+A ++Y I+ + AGIVL G+E+KS+R+ K ++DSY F N Sbjct: 1 MA-NKKLQLDRRVNIKNRRATFDYEILDRYTAGIVLVGSEIKSIRLGKAGLADSYCFFAN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N YI EY A NH RR+RKLLLS++E+ +L ++V+ G+T+VP+ ++ N + Sbjct: 60 GELWLKNMYIAEYFYATYNNHQERRDRKLLLSRKELAKLESSVKTPGVTIVPLSVFINDR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+ + +A+GKK YDKR + K+R+ R RI++ Sbjct: 120 GYAKVVIGVARGKKLYDKRASIKEREDKRTLARIMKH 156 >gi|157803812|ref|YP_001492361.1| SsrA-binding protein [Rickettsia canadensis str. McKiel] gi|166223445|sp|A8EYZ3|SSRP_RICCK RecName: Full=SsrA-binding protein gi|157785075|gb|ABV73576.1| SsrA-binding protein [Rickettsia canadensis str. McKiel] Length = 152 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +SYA E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESYAGDTGHELFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +AN+FNH RR RKLLL +E+ ++ ++ G TLV + +YFN K K++L LA Sbjct: 65 AEYEKANKFNHATRRPRKLLLHTKEMKKIIGKIKIKGYTLVALSMYFNKKNKVKVELGLA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLYDKRESIKEKDWQRDQSRLIRQK 152 >gi|311106009|ref|YP_003978862.1| SsrA-binding protein [Achromobacter xylosoxidans A8] gi|310760698|gb|ADP16147.1| SsrA-binding protein [Achromobacter xylosoxidans A8] Length = 157 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG+VL G EVK++R +V + +SY + E++L ++ Sbjct: 3 IIDNRKATHDYFIEDRYEAGLVLQGWEVKAIRDGRVQLKESYVIVRDGELYLLGMHVSPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R RKLLL EI +L V + G TLVP+ +++ G K+D AL +G Sbjct: 63 PTASTHIHPDAMRTRKLLLKAEEISKLIGKVEQRGYTLVPLNLHYK-NGRIKLDFALGRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+T +++DW R+K RI++ Sbjct: 122 KKMFDKRDTAREKDWQREKERIMKH 146 >gi|298244948|ref|ZP_06968754.1| SsrA-binding protein [Ktedonobacter racemifer DSM 44963] gi|297552429|gb|EFH86294.1| SsrA-binding protein [Ktedonobacter racemifer DSM 44963] Length = 164 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 75/165 (45%), Positives = 100/165 (60%), Gaps = 8/165 (4%) Query: 1 MSLKSRGN-------PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53 M+ S KVVS NR+A ++Y + + EAGI L GTE+KS+R KVN+ Sbjct: 1 MAKASTTKQKEEAQQENSKVVSVNRQAYHDYTVESTIEAGISLVGTEIKSIRDGKVNLRG 60 Query: 54 SYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPM 113 SYA N E WL N++I Y NR+NH P R RKLLL KREI +L V G+TLVP+ Sbjct: 61 SYAIIRNGEAWLENAHIAVYEHGNRYNHEPLRKRKLLLHKREIEQLGQRVAAKGLTLVPL 120 Query: 114 KIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+Y +G AK++L L +GKK +DKR++ +RD R RI+R Sbjct: 121 KLYMK-RGRAKLELGLCKGKKLFDKRQSIAERDVRRDIERIVRGR 164 >gi|153813800|ref|ZP_01966468.1| hypothetical protein RUMTOR_00006 [Ruminococcus torques ATCC 27756] gi|145848196|gb|EDK25114.1| hypothetical protein RUMTOR_00006 [Ruminococcus torques ATCC 27756] Length = 165 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +++++N+KA ++Y I+ +EAGIVL GTEVKSLR+ K +I +++ E+ E+++ Sbjct: 14 KSEVRMIANNKKAYHDYFILEKYEAGIVLHGTEVKSLRMGKCSIKEAFIRVESGEMYIYG 73 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K+EI +++ ++ G+TLVP+++YF L K+++ Sbjct: 74 MHISPYEKGNIFNKDPLRVRKLLLHKKEIDKMFGKMKEQGITLVPLQVYFKGS-LVKMEI 132 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +A+GKK YDKR+ K+D R+ R + N Sbjct: 133 GVAKGKKLYDKRDDIAKKDQKREAQREFKIRN 164 >gi|327490244|gb|EGF22032.1| SsrA-binding protein [Streptococcus sanguinis SK1058] Length = 155 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIEAGMVLTGTEIKSVRAARINLKDGFAQIKNGEAWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKR++ K+R+ +R R ++ N Sbjct: 126 GKHDYDKRDSIKRREQNRDIARQMKNFN 153 >gi|46190858|ref|ZP_00121019.2| COG0691: tmRNA-binding protein [Bifidobacterium longum DJO10A] gi|189439801|ref|YP_001954882.1| SsrA-binding protein [Bifidobacterium longum DJO10A] gi|213692882|ref|YP_002323468.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|239622361|ref|ZP_04665392.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453670|ref|YP_003660813.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|312133207|ref|YP_004000546.1| smpb [Bifidobacterium longum subsp. longum BBMN68] gi|317482553|ref|ZP_07941568.1| SsrA-binding protein [Bifidobacterium sp. 12_1_47BFAA] gi|322688637|ref|YP_004208371.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322690623|ref|YP_004220193.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|30173313|sp|Q8G540|SSRP_BIFLO RecName: Full=SsrA-binding protein gi|238692074|sp|B3DTB5|SSRP_BIFLD RecName: Full=SsrA-binding protein gi|254778346|sp|B7GUE4|SSRP_BIFLI RecName: Full=SsrA-binding protein gi|189428236|gb|ACD98384.1| tmRNA-binding protein [Bifidobacterium longum DJO10A] gi|213524343|gb|ACJ53090.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|239514358|gb|EEQ54225.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517270|emb|CBK70886.1| SsrA-binding protein [Bifidobacterium longum subsp. longum F8] gi|296183101|gb|ADG99982.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JDM301] gi|311772408|gb|ADQ01896.1| SmpB [Bifidobacterium longum subsp. longum BBMN68] gi|316915975|gb|EFV37382.1| SsrA-binding protein [Bifidobacterium sp. 12_1_47BFAA] gi|320455479|dbj|BAJ66101.1| SsrA-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|320459056|dbj|BAJ69677.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459973|dbj|BAJ70593.1| SsrA-binding protein [Bifidobacterium longum subsp. infantis 157F] Length = 158 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65 +K++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL Sbjct: 3 KETGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFISIDRRGEMWL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHRLQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 122 EIALARGKKEFDKRQALREEQDKREALRAMRYAN 155 >gi|224282584|ref|ZP_03645906.1| SsrA-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|310287044|ref|YP_003938302.1| SsrA-binding protein [Bifidobacterium bifidum S17] gi|311063916|ref|YP_003970641.1| SmpB SsrA-binding protein [Bifidobacterium bifidum PRL2010] gi|313139742|ref|ZP_07801935.1| SsrA-binding protein [Bifidobacterium bifidum NCIMB 41171] gi|309250980|gb|ADO52728.1| SsrA-binding protein [Bifidobacterium bifidum S17] gi|310866235|gb|ADP35604.1| SmpB SsrA-binding protein [Bifidobacterium bifidum PRL2010] gi|313132252|gb|EFR49869.1| SsrA-binding protein [Bifidobacterium bifidum NCIMB 41171] Length = 159 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 97/160 (60%), Gaps = 6/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ +++ NRKAR++Y I +EAG+VLTGTEVKSLR + ++++++ Sbjct: 1 MAK----EQGTVLIAQNRKARHDYLIEDKYEAGLVLTGTEVKSLREGRASLAEAFVSIDR 56 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL + IPEYL NH P+R RKLLL ++I +L + G T+VP+ +YF Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAQQIVKLSRQIEAKGYTIVPLSLYFKD 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G AK ++ALA+GK+ +DKR+ ++ R+ R +R N Sbjct: 117 -GRAKAEIALARGKREFDKRQALREEQDKREALRAMRYKN 155 >gi|150020149|ref|YP_001305503.1| SsrA-binding protein [Thermosipho melanesiensis BI429] gi|187629777|sp|A6LJL7|SSRP_THEM4 RecName: Full=SsrA-binding protein gi|149792670|gb|ABR30118.1| SsrA-binding protein [Thermosipho melanesiensis BI429] Length = 147 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 71/145 (48%), Positives = 101/145 (69%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA +Y I+ ++EAGI L GTEVKSLR S N DS+ +N E++L N IP Sbjct: 2 KIIATNKKAFSDYIILETYEAGIELRGTEVKSLRESGANFKDSFCRIKNGEVFLLNLNIP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y + NH P R R+LLL K+EIHRL V+ G+T++P KIYFN +GL K+++A+A+ Sbjct: 62 QYRNGSLNNHDPERPRRLLLHKKEIHRLLGKVKEQGLTIIPTKIYFNNRGLVKVEIAVAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK YDKRE KKR+ +R+ L+ Sbjct: 122 GKKKYDKREDIKKREINRRIREYLK 146 >gi|251794221|ref|YP_003008952.1| SsrA-binding protein [Paenibacillus sp. JDR-2] gi|247541847|gb|ACS98865.1| SsrA-binding protein [Paenibacillus sp. JDR-2] Length = 160 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 3/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ N K ++ N+KA ++Y I ++EAGIVL GTE+K+LR+ K NISD++AT N E Sbjct: 1 MGAKKNDG-KQLAQNKKASHDYFIEDTYEAGIVLMGTEIKALRMGKANISDAFATIRNGE 59 Query: 63 IWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +++ N +I + Q NR N P R RKLLL K++IH+L +++G ++VP+KIY G Sbjct: 60 MFIHNMHISPFDQGNRHNPTDPTRARKLLLHKQQIHKLLGQSKQEGYSIVPLKIYVR-NG 118 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + L +GKK YDKR+T KRD R R LRE Sbjct: 119 YAKLLIGLGKGKKQYDKRDTAAKRDAQRDIQRALREK 155 >gi|296135381|ref|YP_003642623.1| SsrA-binding protein [Thiomonas intermedia K12] gi|294339488|emb|CAZ87847.1| SsrA-binding protein (Small protein B) [Thiomonas sp. 3As] gi|295795503|gb|ADG30293.1| SsrA-binding protein [Thiomonas intermedia K12] Length = 147 Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKA +NY + FEAGIVL G EVKS+R +V ++D Y + E++L + Sbjct: 3 IAENRKAHFNYFLEDRFEAGIVLEGWEVKSVRAGQVQLTDGYVVIRDGELFLIGMNVTAL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLL+ K EI +L V + G TLVP+ +++ G K+DLAL +G Sbjct: 63 NSASTHVRPDASRTRKLLMHKDEIRKLIGKVEQRGYTLVPINLHYKG-GRVKLDLALGKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK++DKR+TE KRDW R+K RI++ Sbjct: 122 KKDHDKRDTEAKRDWQREKARIMKTR 147 >gi|165976288|ref|YP_001651881.1| SsrA-binding protein, small major protein B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165876389|gb|ABY69437.1| SsrA-binding protein, small major protein B [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 146 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 2/144 (1%) Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ- 75 N++AR+ Y I EAG+ L G EVKSLR K NI DSY TF N E +L + I Sbjct: 2 NKRARHEYFIEEEIEAGLELQGWEVKSLRAGKANIGDSYVTFRNGEAFLFGATITPLNMA 61 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + P R RKLLL+KRE+ L+ V RDGMT+V + +Y+ AK+ + +A+GKK Sbjct: 62 STHIVCDPTRTRKLLLNKRELDSLFGKVNRDGMTVVALSLYWK-NAWAKVKVGVAKGKKL 120 Query: 136 YDKRETEKKRDWDRQKHRILREHN 159 +DKRE K R+W K RI++ N Sbjct: 121 HDKREDIKDREWQVAKQRIMKNAN 144 >gi|145220012|ref|YP_001130721.1| SsrA-binding protein [Prosthecochloris vibrioformis DSM 265] gi|189046837|sp|A4SFG0|SSRP_PROVI RecName: Full=SsrA-binding protein gi|145206176|gb|ABP37219.1| SsrA-binding protein [Chlorobium phaeovibrioides DSM 265] Length = 157 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + + NRKAR+ + I+ + AGI L G+EVKS+R+ K ++++S+A + Sbjct: 1 MAKKQQTKTYTQAI-QNRKARFEFEILDTVVAGIELLGSEVKSVRLGKASLNESFAIIHH 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N I Y + + P+R+RKLLL K EI +L + + G+ L+P+K +FN K Sbjct: 60 GEVWLENMQITPYEFNHLDSLEPKRSRKLLLHKAEIAKLQSQISEKGLALIPLKAFFNPK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ K++LA+A+GKK +DKRET K RD +RQ +I +++ Sbjct: 120 GVLKLELAVAKGKKLFDKRETIKNRDNERQLQQIKKQY 157 >gi|253998941|ref|YP_003051004.1| SsrA-binding protein [Methylovorus sp. SIP3-4] gi|313201044|ref|YP_004039702.1| ssra-binding protein [Methylovorus sp. MP688] gi|253985620|gb|ACT50477.1| SsrA-binding protein [Methylovorus sp. SIP3-4] gi|312440360|gb|ADQ84466.1| SsrA-binding protein [Methylovorus sp. MP688] Length = 152 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I +EAGIVL G EVK++R +++ + ++Y + EI+L ++ Sbjct: 3 IAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRDNRIQLKEAYVIIQRGEIYLIGCHVTPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL EI +L V R G TLVP+ ++F +G K+ + LA+G Sbjct: 63 GSASTHVRPDAIRTRKLLLHSEEIAKLIGKVERAGYTLVPLDLHFT-RGRIKLQIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR+TEK+RDW +++ +++ H Sbjct: 122 KKQYDKRQTEKERDWKMEQNSLMKRH 147 >gi|225390489|ref|ZP_03760213.1| hypothetical protein CLOSTASPAR_04244 [Clostridium asparagiforme DSM 15981] gi|225043453|gb|EEG53699.1| hypothetical protein CLOSTASPAR_04244 [Clostridium asparagiforme DSM 15981] Length = 155 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K+V++N+KA ++Y I FEAGI L GTEVKS+R+ K ++ +++ + E+++ Sbjct: 2 GKESIKLVANNKKAYHDYFIDDKFEAGIELFGTEVKSIRMGKCSVKEAFVKIDKGEVFIY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R RKLLL + EI +L + + G TLVP+++YF L K++ Sbjct: 62 GMHISPYEKGNIFNKDPLRVRKLLLHRSEIMKLNGKITQKGYTLVPLQVYFKGS-LVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR K+D R+ + + N Sbjct: 121 IGLARGKKLYDKRADLAKKDQRRELEKDFKVKN 153 >gi|225350860|ref|ZP_03741883.1| hypothetical protein BIFPSEUDO_02434 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158316|gb|EEG71558.1| hypothetical protein BIFPSEUDO_02434 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 159 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 6/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+ Sbjct: 1 MAK----EQGVKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDR 56 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL + IPEYL NH P+R RKLLL +I +L + G T++P+ +YF Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAQIDKLARQSQAKGFTIIPLSLYFKD 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K ++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 117 -GRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYAN 155 >gi|91792597|ref|YP_562248.1| SsrA-binding protein [Shewanella denitrificans OS217] gi|91714599|gb|ABE54525.1| SsrA-binding protein [Shewanella denitrificans OS217] Length = 186 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 3/160 (1%) Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M K ++ N++A + Y I EAG+ L G EVKS+R+ KVN+SD Y Sbjct: 22 MVKKNSKSAKNASATIARNKRATFEYRIEDKIEAGLQLMGWEVKSIRMGKVNLSDCYVYI 81 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E ++ I + P R +KLLL + EI +L + R G TL+P+ +Y+ Sbjct: 82 KEGEAFMHGCTIQPLNTASTHVVCDPIRTKKLLLKRSEIDKLAGLIERQGYTLIPLSMYW 141 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K+R+W +K R++++ Sbjct: 142 RKGAWVKVEIGLGKGKKDHDKREDTKEREWKIEKARVMKK 181 >gi|91775498|ref|YP_545254.1| SsrA-binding protein [Methylobacillus flagellatus KT] gi|122400008|sp|Q1H274|SSRP_METFK RecName: Full=SsrA-binding protein gi|91709485|gb|ABE49413.1| SsrA-binding protein [Methylobacillus flagellatus KT] Length = 154 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I +EAGIVL G EVK++R ++V + ++Y + EI+L ++ Sbjct: 3 IAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRENRVQLKEAYVIIQRGEIYLIGCHVTPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL +I +L V R G TLVP+ +++ +G K+ + LA+G Sbjct: 63 GSASTHVRPDAIRTRKLLLHSEQIAKLIGKVERAGYTLVPLDMHYT-RGRIKVQIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR +EK++DW R++ +++++ Sbjct: 122 KKQYDKRHSEKEKDWKREQSSLMKKY 147 >gi|121594890|ref|YP_986786.1| SsrA-binding protein [Acidovorax sp. JS42] gi|222110459|ref|YP_002552723.1| ssra-binding protein [Acidovorax ebreus TPSY] gi|166222353|sp|A1W8Y5|SSRP_ACISJ RecName: Full=SsrA-binding protein gi|254778358|sp|B9MGQ0|SSRP_DIAST RecName: Full=SsrA-binding protein gi|120606970|gb|ABM42710.1| SsrA-binding protein [Acidovorax sp. JS42] gi|221729903|gb|ACM32723.1| SsrA-binding protein [Acidovorax ebreus TPSY] Length = 157 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 92/159 (57%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++DN+KA YNY +EAG+VL G EVK+LR KV ++D Y ++ Sbjct: 1 MAKKPDTSSR---IADNKKAAYNYFFEERYEAGLVLHGWEVKALREGKVQLTDGYVIIKD 57 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L I + + R +KLL+ K EI RL V + G TLVP+ +++ Sbjct: 58 GELFLIGCQINPLKTASTHVSPDAARIKKLLMHKDEIRRLIGKVEQKGYTLVPLNLHWKD 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK ++ALA+GK +DKR+T K+R+ R+ R+++ Sbjct: 118 -GRAKCEIALAKGKAEHDKRDTIKEREGKREVERVMKSR 155 >gi|288905815|ref|YP_003431037.1| tmRNA-binding protein SmpB [Streptococcus gallolyticus UCN34] gi|306831905|ref|ZP_07465060.1| SsrA-binding protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978850|ref|YP_004288566.1| SsrA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732541|emb|CBI14113.1| putative tmRNA-binding protein SmpB [Streptococcus gallolyticus UCN34] gi|304425831|gb|EFM28948.1| SsrA-binding protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178778|emb|CBZ48822.1| SsrA-binding protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 155 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQDPERTRKLLLKKREIEKLSNDLKGTGMTLVPLKVYLK-NGFAKVLLGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRET K+R+ DR R ++ N Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153 >gi|225075512|ref|ZP_03718711.1| hypothetical protein NEIFLAOT_00525 [Neisseria flavescens NRL30031/H210] gi|241758494|ref|ZP_04756613.1| SsrA-binding protein [Neisseria flavescens SK114] gi|261381143|ref|ZP_05985716.1| SsrA-binding protein [Neisseria subflava NJ9703] gi|319637944|ref|ZP_07992710.1| SsrA-binding protein [Neisseria mucosa C102] gi|224953147|gb|EEG34356.1| hypothetical protein NEIFLAOT_00525 [Neisseria flavescens NRL30031/H210] gi|241321329|gb|EER57477.1| SsrA-binding protein [Neisseria flavescens SK114] gi|284795948|gb|EFC51295.1| SsrA-binding protein [Neisseria subflava NJ9703] gi|317401099|gb|EFV81754.1| SsrA-binding protein [Neisseria mucosa C102] Length = 148 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAGIVL G EVK++R ++V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDQIEAGIVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI++L R G T+VP+ +++ +G K+++ LA+G Sbjct: 63 PTASTHVKPDPVRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHYT-RGRIKVEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146 >gi|197334587|ref|YP_002156833.1| SsrA-binding protein [Vibrio fischeri MJ11] gi|226706536|sp|B5FA19|SSRP_VIBFM RecName: Full=SsrA-binding protein gi|197316077|gb|ACH65524.1| SsrA-binding protein [Vibrio fischeri MJ11] Length = 161 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N++AR+ Y I EAGI L G EVKSLR KVNI++SY Sbjct: 1 MAKKKSKDKAGSNTIAMNKQARHEYFIDDEIEAGIELQGWEVKSLRSGKVNIAESYVYVR 60 Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + EI+++ I + P R RKLL+S++EI L V R+GMTLV +Y+ Sbjct: 61 DGEIFISGMTITPLQAASTHVVANPTRIRKLLMSRKEIDNLIGRVNREGMTLVATTMYW- 119 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + AKI + +A+GKK +DKR K++DW+R K RI++ Sbjct: 120 VRSWAKIKVGVAKGKKLHDKRTDSKEKDWNRDKARIMK 157 >gi|291563701|emb|CBL42517.1| SsrA-binding protein [butyrate-producing bacterium SS3/4] Length = 156 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + K++++N+KA +++ I FE GI L GTEVKS+R+ K +I +S+ NDE+ + Sbjct: 3 KSSGFKLIANNKKAYFDFFIDDKFECGIALAGTEVKSMRMGKCSIKESFVRITNDEVMIY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R RKLL+ + EI++L ++ G TLVP+++YF L K++ Sbjct: 63 GMHISPYEKGNIFNKDPLRERKLLMHRYEINKLKGKIQEKGYTLVPLQVYFKGS-LVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR K+D R+ + + N Sbjct: 122 IGLARGKKLYDKRADIAKKDQRRELEKEFKVKN 154 >gi|88856361|ref|ZP_01131020.1| SsrA-binding protein [marine actinobacterium PHSC20C1] gi|88814445|gb|EAR24308.1| SsrA-binding protein [marine actinobacterium PHSC20C1] Length = 159 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 68/153 (44%), Positives = 103/153 (67%), Gaps = 2/153 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWL 65 +KVV+ NRKAR++Y I +FEAG+VL+GTEVKSLR+ + ++ D Y ++ E WL Sbjct: 3 KEGDRKVVASNRKARHDYSIEDTFEAGLVLSGTEVKSLRLGRASLIDGYGYIDDHAEAWL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +IPE+ Q + NH PRR RK+LL K +I +++ +++ G TLVP+ IYF G AK+ Sbjct: 63 DAVHIPEFFQGSWNNHPPRRKRKMLLHKEQILKIHNKIKQGGYTLVPLSIYFLD-GRAKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +LA+A+GK+ YDKR+T ++R R+ R + Sbjct: 122 ELAVAKGKREYDKRQTLRERQDKRESDRAISAR 154 >gi|56708252|ref|YP_170148.1| SsrA-binding protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89256144|ref|YP_513506.1| SsrA-binding protein [Francisella tularensis subsp. holarctica LVS] gi|110670723|ref|YP_667280.1| SsrA-binding protein [Francisella tularensis subsp. tularensis FSC198] gi|115314616|ref|YP_763339.1| SsrA-binding protein [Francisella tularensis subsp. holarctica OSU18] gi|134302167|ref|YP_001122136.1| SsrA-binding protein [Francisella tularensis subsp. tularensis WY96-3418] gi|156502171|ref|YP_001428236.1| SsrA-binding protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010588|ref|ZP_02275519.1| SsrA-binding protein [Francisella tularensis subsp. holarctica FSC200] gi|187931556|ref|YP_001891540.1| SsrA-binding protein [Francisella tularensis subsp. mediasiatica FSC147] gi|224457371|ref|ZP_03665844.1| SsrA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254367467|ref|ZP_04983493.1| ssrA-binding protein [Francisella tularensis subsp. holarctica 257] gi|254369147|ref|ZP_04985159.1| hypothetical protein FTAG_00083 [Francisella tularensis subsp. holarctica FSC022] gi|254370738|ref|ZP_04986743.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp. tularensis FSC033] gi|254875072|ref|ZP_05247782.1| ssrA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|290953285|ref|ZP_06557906.1| SsrA-binding protein [Francisella tularensis subsp. holarctica URFT1] gi|295313491|ref|ZP_06804087.1| SsrA-binding protein [Francisella tularensis subsp. holarctica URFT1] gi|61216410|sp|Q5NFP4|SSRP_FRATT RecName: Full=SsrA-binding protein gi|122325360|sp|Q0BMI2|SSRP_FRATO RecName: Full=SsrA-binding protein gi|122500902|sp|Q2A446|SSRP_FRATH RecName: Full=SsrA-binding protein gi|123169340|sp|Q14H46|SSRP_FRAT1 RecName: Full=SsrA-binding protein gi|166223218|sp|A7NBC7|SSRP_FRATF RecName: Full=SsrA-binding protein gi|166223220|sp|A4IYL4|SSRP_FRATW RecName: Full=SsrA-binding protein gi|238691557|sp|B2SGA3|SSRP_FRATM RecName: Full=SsrA-binding protein gi|56604744|emb|CAG45819.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp. tularensis SCHU S4] gi|89143975|emb|CAJ79200.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp. holarctica LVS] gi|110321056|emb|CAL09202.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp. tularensis FSC198] gi|115129515|gb|ABI82702.1| tmRNA-binding protein [Francisella tularensis subsp. holarctica OSU18] gi|134049944|gb|ABO47015.1| SsrA-binding protein [Francisella tularensis subsp. tularensis WY96-3418] gi|134253283|gb|EBA52377.1| ssrA-binding protein [Francisella tularensis subsp. holarctica 257] gi|151568981|gb|EDN34635.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp. tularensis FSC033] gi|156252774|gb|ABU61280.1| SsrA (small, stable RNA) -binding protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157122097|gb|EDO66237.1| hypothetical protein FTAG_00083 [Francisella tularensis subsp. holarctica FSC022] gi|187712465|gb|ACD30762.1| SsrA (tmRNA)-binding protein [Francisella tularensis subsp. mediasiatica FSC147] gi|254841071|gb|EET19507.1| ssrA-binding protein [Francisella tularensis subsp. tularensis MA00-2987] gi|282159479|gb|ADA78870.1| SsrA-binding protein [Francisella tularensis subsp. tularensis NE061598] Length = 157 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 57/154 (37%), Positives = 92/154 (59%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ ++ E W Sbjct: 2 SKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKHGEAW 61 Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N P + RKLLL++REI+++ + + G T +P+ +Y+ Sbjct: 62 LFNCLITPLLSASTHVVADAAATRKLLLNRREINKIMGRIEQKGFTCIPLSMYWKGP-RV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALAQGKK +DKR+ +K +DW R+K R+ ++ Sbjct: 121 KVEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 154 >gi|301794113|emb|CBW36519.1| SsrA-binding protein [Streptococcus pneumoniae INV104] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++NI D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINIKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|281422454|ref|ZP_06253453.1| SsrA-binding protein [Prevotella copri DSM 18205] gi|281403517|gb|EFB34197.1| SsrA-binding protein [Prevotella copri DSM 18205] Length = 159 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + + K + N+KA + Y V ++ AGIVLTGTE+KS+R K ++ D Y F Sbjct: 1 MNKQEQELRKKSPIQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRGGKASLVDCYCDFY 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH RR+RKLLL+KRE+ RL ++ G T+VP I+ + Sbjct: 61 QGELWVKGMNISPYFYGSFSNHEARRDRKLLLTKRELRRLEEDSKQPGFTIVPTLIFIDN 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+AL +GKK YDKR+T K+++ R+ R ++ Sbjct: 121 HGRAKVDIALCKGKKEYDKRQTLKEKEDRREMDRAIKHF 159 >gi|224824530|ref|ZP_03697637.1| SsrA-binding protein [Lutiella nitroferrum 2002] gi|224603023|gb|EEG09199.1| SsrA-binding protein [Lutiella nitroferrum 2002] Length = 148 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 91/146 (62%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I EAG+VL G EVK++R +V + +SY ++N WL +I Sbjct: 3 IIDNRKAYHDYFIEEKLEAGLVLEGWEVKAIRAGRVQLKESYVIWKNGAFWLFGCHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P RNRKLLL++ +I++ V R G T+V + +++ KG+ K ++ LA+G Sbjct: 63 QSASTHVKPDPTRNRKLLLNQAQINKFIGKVERAGYTMVALDLHYT-KGMIKAEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR++ K+R+ DR+K R LR+ Sbjct: 122 KKLHDKRDSAKERELDREKQRFLRDR 147 >gi|268316595|ref|YP_003290314.1| SsrA-binding protein [Rhodothermus marinus DSM 4252] gi|262334129|gb|ACY47926.1| SsrA-binding protein [Rhodothermus marinus DSM 4252] Length = 154 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 67/135 (49%), Positives = 88/135 (65%), Gaps = 2/135 (1%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K+V+ NRKAR+ Y I + EAG+VL GTEVKSLR +VN+ D+Y T EN E++L N Sbjct: 3 DNIKIVATNRKARHEYQIEDTLEAGLVLKGTEVKSLREGRVNLQDAYCTVENGEMYLLNC 62 Query: 69 YIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y NH P R RKLL+ KREI R A ++ G T+VP+KIYF G AK+++ Sbjct: 63 HISPYRNTGAHDNHDPLRPRKLLMHKREIERWGQAAQQKGYTIVPLKIYFK-NGRAKVEI 121 Query: 128 ALAQGKKNYDKRETE 142 LA+GKK YD+R Sbjct: 122 GLARGKKLYDRRADI 136 >gi|15902923|ref|NP_358473.1| SsrA-binding protein [Streptococcus pneumoniae R6] gi|116516450|ref|YP_816345.1| SsrA-binding protein [Streptococcus pneumoniae D39] gi|148988421|ref|ZP_01819868.1| SsrA-binding protein [Streptococcus pneumoniae SP6-BS73] gi|148992888|ref|ZP_01822507.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68] gi|148998587|ref|ZP_01826027.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70] gi|149002528|ref|ZP_01827462.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|149006345|ref|ZP_01830057.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74] gi|149019568|ref|ZP_01834887.1| SsrA-binding protein [Streptococcus pneumoniae SP23-BS72] gi|168483046|ref|ZP_02707998.1| SsrA-binding protein [Streptococcus pneumoniae CDC1873-00] gi|168485928|ref|ZP_02710436.1| SsrA-binding protein [Streptococcus pneumoniae CDC1087-00] gi|168490205|ref|ZP_02714404.1| SsrA-binding protein [Streptococcus pneumoniae SP195] gi|168491066|ref|ZP_02715209.1| SsrA-binding protein [Streptococcus pneumoniae CDC0288-04] gi|168494406|ref|ZP_02718549.1| SsrA-binding protein [Streptococcus pneumoniae CDC3059-06] gi|168575639|ref|ZP_02721575.1| SsrA-binding protein [Streptococcus pneumoniae MLV-016] gi|169833807|ref|YP_001694421.1| SsrA-binding protein [Streptococcus pneumoniae Hungary19A-6] gi|194396988|ref|YP_002037610.1| SsrA-binding protein [Streptococcus pneumoniae G54] gi|221231738|ref|YP_002510890.1| SsrA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225854480|ref|YP_002735992.1| SsrA-binding protein [Streptococcus pneumoniae JJA] gi|225861137|ref|YP_002742646.1| SsrA-binding protein [Streptococcus pneumoniae Taiwan19F-14] gi|237650875|ref|ZP_04525127.1| SsrA-binding protein [Streptococcus pneumoniae CCRI 1974] gi|237821326|ref|ZP_04597171.1| SsrA-binding protein [Streptococcus pneumoniae CCRI 1974M2] gi|289167820|ref|YP_003446089.1| tmRNA(SsrA)-binding protein [Streptococcus mitis B6] gi|298229548|ref|ZP_06963229.1| SsrA-binding protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254483|ref|ZP_06978069.1| SsrA-binding protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503015|ref|YP_003724955.1| SsrA-binding protein SmpB [Streptococcus pneumoniae TCH8431/19A] gi|307067634|ref|YP_003876600.1| tmRNA-binding protein [Streptococcus pneumoniae AP200] gi|307127474|ref|YP_003879505.1| SsrA-binding protein [Streptococcus pneumoniae 670-6B] gi|307704705|ref|ZP_07641604.1| ssrA-binding protein [Streptococcus mitis SK597] gi|307706473|ref|ZP_07643282.1| ssrA-binding protein [Streptococcus mitis SK321] gi|307708610|ref|ZP_07645074.1| SsrA-binding protein [Streptococcus mitis NCTC 12261] gi|30173271|sp|Q8DQ29|SSRP_STRR6 RecName: Full=SsrA-binding protein gi|122278769|sp|Q04KV3|SSRP_STRP2 RecName: Full=SsrA-binding protein gi|226706534|sp|B5E494|SSRP_STRP4 RecName: Full=SsrA-binding protein gi|238688291|sp|B1IBD6|SSRP_STRPI RecName: Full=SsrA-binding protein gi|254778382|sp|B8ZPD4|SSRP_STRPJ RecName: Full=SsrA-binding protein gi|254778384|sp|C1CDX1|SSRP_STRZJ RecName: Full=SsrA-binding protein gi|254778386|sp|C1CRS4|SSRP_STRZT RecName: Full=SsrA-binding protein gi|15458484|gb|AAK99683.1| Small protein B [Streptococcus pneumoniae R6] gi|116077026|gb|ABJ54746.1| SsrA-binding protein [Streptococcus pneumoniae D39] gi|147755585|gb|EDK62632.1| SsrA-binding protein [Streptococcus pneumoniae SP11-BS70] gi|147759465|gb|EDK66457.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS69] gi|147762122|gb|EDK69084.1| SsrA-binding protein [Streptococcus pneumoniae SP18-BS74] gi|147926102|gb|EDK77176.1| SsrA-binding protein [Streptococcus pneumoniae SP6-BS73] gi|147928340|gb|EDK79356.1| SsrA-binding protein [Streptococcus pneumoniae SP9-BS68] gi|147930943|gb|EDK81923.1| SsrA-binding protein [Streptococcus pneumoniae SP23-BS72] gi|168996309|gb|ACA36921.1| SsrA-binding protein [Streptococcus pneumoniae Hungary19A-6] gi|172043380|gb|EDT51426.1| SsrA-binding protein [Streptococcus pneumoniae CDC1873-00] gi|183571000|gb|EDT91528.1| SsrA-binding protein [Streptococcus pneumoniae CDC1087-00] gi|183571446|gb|EDT91974.1| SsrA-binding protein [Streptococcus pneumoniae SP195] gi|183574708|gb|EDT95236.1| SsrA-binding protein [Streptococcus pneumoniae CDC0288-04] gi|183575631|gb|EDT96159.1| SsrA-binding protein [Streptococcus pneumoniae CDC3059-06] gi|183578534|gb|EDT99062.1| SsrA-binding protein [Streptococcus pneumoniae MLV-016] gi|194356655|gb|ACF55103.1| SsrA-binding protein [Streptococcus pneumoniae G54] gi|220674198|emb|CAR68726.1| SsrA-binding protein [Streptococcus pneumoniae ATCC 700669] gi|225723907|gb|ACO19760.1| SsrA-binding protein [Streptococcus pneumoniae JJA] gi|225728190|gb|ACO24041.1| SsrA-binding protein [Streptococcus pneumoniae Taiwan19F-14] gi|288907387|emb|CBJ22224.1| tmRNA(SsrA)-binding protein [Streptococcus mitis B6] gi|298238610|gb|ADI69741.1| possible SsrA-binding protein SmpB [Streptococcus pneumoniae TCH8431/19A] gi|306409171|gb|ADM84598.1| tmRNA-binding protein [Streptococcus pneumoniae AP200] gi|306484536|gb|ADM91405.1| SsrA-binding protein [Streptococcus pneumoniae 670-6B] gi|307615359|gb|EFN94568.1| SsrA-binding protein [Streptococcus mitis NCTC 12261] gi|307618183|gb|EFN97341.1| ssrA-binding protein [Streptococcus mitis SK321] gi|307621752|gb|EFO00790.1| ssrA-binding protein [Streptococcus mitis SK597] gi|327389253|gb|EGE87598.1| ssrA-binding protein [Streptococcus pneumoniae GA04375] gi|332073307|gb|EGI83786.1| ssrA-binding protein [Streptococcus pneumoniae GA17570] gi|332075590|gb|EGI86058.1| ssrA-binding protein [Streptococcus pneumoniae GA17545] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|319762643|ref|YP_004126580.1| ssra-binding protein [Alicycliphilus denitrificans BC] gi|330824733|ref|YP_004388036.1| SsrA-binding protein [Alicycliphilus denitrificans K601] gi|317117204|gb|ADU99692.1| SsrA-binding protein [Alicycliphilus denitrificans BC] gi|329310105|gb|AEB84520.1| SsrA-binding protein [Alicycliphilus denitrificans K601] Length = 157 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++DN+KA YNY EAG+VL G EVK+LR KV ++D Y ++ Sbjct: 1 MAKKPETSSR---IADNKKAAYNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIKD 57 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L I + N R +KLLL K EI RL V + G TLVP+ +++ Sbjct: 58 GELFLIGCQINPLKTASTHVNPDATRIKKLLLHKDEIRRLIGKVEQKGYTLVPLNLHWKD 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK D+ALA+GK +DKR+T K+R+ R+ R ++ Sbjct: 118 -GRAKCDIALAKGKAEHDKRDTIKEREGKREVERAMKSR 155 >gi|218282137|ref|ZP_03488436.1| hypothetical protein EUBIFOR_01017 [Eubacterium biforme DSM 3989] gi|218216863|gb|EEC90401.1| hypothetical protein EUBIFOR_01017 [Eubacterium biforme DSM 3989] Length = 152 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + +K +++NRKAR++Y + FEAG+VL GTE+KS+R KV + DSY +F+ E ++ Sbjct: 2 SQNQKTIAENRKARHDYELYDRFEAGLVLQGTEIKSIRRGKVQLKDSYISFQKGEAFIKG 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y NRFNH R+RKLL+ K+EI +L + R G T+VP+KIY KGLAK+++ Sbjct: 62 MHISPYEFGNRFNHDETRDRKLLMHKQEIQKLEQSARIKGYTVVPVKIYL-YKGLAKLEI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 ALA+GK +DKRE++K +D R+ + L+ Sbjct: 121 ALAKGKNLHDKRESQKAKDAQREIQKALKN 150 >gi|322376472|ref|ZP_08050965.1| SsrA-binding protein [Streptococcus sp. M334] gi|321282279|gb|EFX59286.1| SsrA-binding protein [Streptococcus sp. M334] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK++YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKRDYDKRESIKRREQNRDIARVMKAVN 153 >gi|160938226|ref|ZP_02085581.1| hypothetical protein CLOBOL_03122 [Clostridium bolteae ATCC BAA-613] gi|158438599|gb|EDP16356.1| hypothetical protein CLOBOL_03122 [Clostridium bolteae ATCC BAA-613] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K+V++N+KA ++Y I +EAGI L GTEVKS+R+ K ++ +++ + E+++ Sbjct: 2 GKESIKLVANNKKAYHDYFIDEKYEAGIELFGTEVKSIRMGKCSVKEAFVKIDRGEVYVC 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R R+LLL K EI +L + G TLVP+++YF L K++ Sbjct: 62 GMHISPYEKGNIFNKDPLRVRRLLLHKYEIMKLNGKIAEKGYTLVPLQVYFKGS-LVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR K+D R+ + + N Sbjct: 121 VGLARGKKLYDKRADIAKKDQRRELEKEFKVKN 153 >gi|57238809|ref|YP_179945.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden] gi|58578738|ref|YP_196950.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden] gi|81557362|sp|Q5HC98|SSRP_EHRRW RecName: Full=SsrA-binding protein gi|57160888|emb|CAH57793.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden] gi|58417364|emb|CAI26568.1| SsrA-binding protein [Ehrlichia ruminantium str. Welgevonden] Length = 148 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 78/144 (54%), Positives = 108/144 (75%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I++SY T N E+WL N +I E Sbjct: 3 IIIENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAESYVTERNMELWLCNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y QAN NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KG+AK + + +G Sbjct: 63 YTQANTKNHNPTRPRKLLLKKKQIYKISGNMKNDGFTVVPLFLYFNDKGIAKAKIVIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRET K RDW+R+K RILR Sbjct: 123 KKLHDKRETIKARDWNREKSRILR 146 >gi|306834019|ref|ZP_07467140.1| SsrA-binding protein [Streptococcus bovis ATCC 700338] gi|304423807|gb|EFM26952.1| SsrA-binding protein [Streptococcus bovis ATCC 700338] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 73/148 (49%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI +L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQAPERTRKLLLKKREIEKLSNDLKGTGMTLVPLKVYLK-NGFAKVLLGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRET K+R+ DR R ++ N Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153 >gi|283768408|ref|ZP_06341320.1| SsrA-binding protein [Bulleidia extructa W1219] gi|283104800|gb|EFC06172.1| SsrA-binding protein [Bulleidia extructa W1219] Length = 150 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 95/150 (63%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KVV+ NR+A ++Y + FE G+VLTGTE+KS+R+ KV DSY T E W+ Sbjct: 2 DSIKVVAFNRRAAHDYFLEDRFECGMVLTGTEIKSIRLGKVQFQDSYITIRKGEAWVKML 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y N FN R+RKLLL K EI RL VR G TL+P++IY G AK+++A Sbjct: 62 HISPYKYGNIFNVDETRDRKLLLHKLEIQRLDQKVRLKGYTLIPVRIYLK-NGKAKLEVA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK +DKRE++K+RD R+ + L+ + Sbjct: 121 LAKGKNLHDKRESQKERDAKREMAKALKRY 150 >gi|284030121|ref|YP_003380052.1| SsrA-binding protein [Kribbella flavida DSM 17836] gi|283809414|gb|ADB31253.1| SsrA-binding protein [Kribbella flavida DSM 17836] Length = 173 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + V++ NRKA ++YH+ S+EAG+VL G EVK+LR + ++ +AT E EIWL Sbjct: 16 KKPEADPVIARNRKAAHDYHLGESWEAGMVLQGAEVKALRAGRASLVGGFATVEEREIWL 75 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +IP+Y QA FN RR RKLLL + +I ++ V G+T+VP+ +YF G AK+ Sbjct: 76 HGVHIPQYSQARWFNDGSRRKRKLLLHRAQIDKIERKVNESGLTIVPVLLYFKD-GRAKV 134 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++ALA+GKK +DKR +R+ R+ R + Sbjct: 135 EIALARGKKTWDKRHALAEREATREAERAVSRR 167 >gi|227494931|ref|ZP_03925247.1| tmRNA-binding protein [Actinomyces coleocanis DSM 15436] gi|226831383|gb|EEH63766.1| tmRNA-binding protein [Actinomyces coleocanis DSM 15436] Length = 174 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ N++A ++Y I EAG+VLTGTEVK+LR + ++++++ + E WL + IPE Sbjct: 25 VIARNKRATHDYFIEDRLEAGLVLTGTEVKALRAGRASLAEAWVEIDGGEAWLRQANIPE 84 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y Q NH P R RKLL+ + E+ + V+ G T+VP+++YF G AK++L LA+G Sbjct: 85 YAQGTWTNHAPTRKRKLLMHRSELTKWGQKVQAKGYTIVPLELYFFG-GRAKVELGLARG 143 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K+ +DKR ++R + + R + Sbjct: 144 KQEFDKRHALRERQDNLEARREIHRF 169 >gi|224026108|ref|ZP_03644474.1| hypothetical protein BACCOPRO_02861 [Bacteroides coprophilus DSM 18228] gi|224019344|gb|EEF77342.1| hypothetical protein BACCOPRO_02861 [Bacteroides coprophilus DSM 18228] Length = 153 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 97/152 (63%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + N++A ++Y + ++ AGIVLTGTE+KS+R K ++ D++ F E+W+ Sbjct: 2 KTTASTNINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY + NH RR+RKLLL+K+E+ +L G T+VP +++ N +GLAK+ Sbjct: 62 KNMHIAEYFYGSYNNHAARRDRKLLLTKKELRKLQRTSDEPGFTIVPTRLFINERGLAKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +ALA+GKK YDKR+T K+++ R R+ + Sbjct: 122 VIALAKGKKQYDKRQTLKEKEDRRMMDRMFKR 153 >gi|317486909|ref|ZP_07945719.1| SsrA-binding protein [Bilophila wadsworthia 3_1_6] gi|316921784|gb|EFV43060.1| SsrA-binding protein [Bilophila wadsworthia 3_1_6] Length = 153 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 87/156 (55%), Gaps = 4/156 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K G P ++ DNRKAR+ Y + + EAGI LTG EVKSLR +VN +DSY F Sbjct: 1 MSAKKSGGP---LIGDNRKARHIYEYLETIEAGISLTGPEVKSLRAGQVNFTDSYVEFRR 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +I Y A R RKLL+ +EI A V + G+T+VP K+Y Sbjct: 58 GEAWLIGLHIAPYTNAGYVEQNADRPRKLLMHAQEIASFAAKVEQKGLTVVPSKLYLK-H 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 G K++LAL +G+K +D R K+R R R LR Sbjct: 117 GKIKVELALGRGRKLHDHRVELKRRAETRDMQRELR 152 >gi|256831076|ref|YP_003159804.1| SsrA-binding protein [Desulfomicrobium baculatum DSM 4028] gi|256580252|gb|ACU91388.1| SsrA-binding protein [Desulfomicrobium baculatum DSM 4028] Length = 154 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 94/157 (59%), Gaps = 4/157 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K K+++ NRKAR+ Y ++ EAGI+LTG+EVKSLR KVN D Y + Sbjct: 1 MCAKP---TGIKIIAANRKARHFYELLDFIEAGIMLTGSEVKSLRDGKVNFMDGYVRISD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L+ +I Y A H P R RKLL+ + EIH L + + + G+TLVP K+YF Sbjct: 58 GEAFLSGVHISTYANAGYAQHVPDRERKLLMHRHEIHSLKSKMEQKGLTLVPTKLYFKD- 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G KI+LALA+GKK YD+RE K++ +R R + Sbjct: 117 GKIKIELALAKGKKVYDRREDLKQKAVNRDTEREMNR 153 >gi|308235210|ref|ZP_07665947.1| SsrA-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114812|ref|YP_003986033.1| SsrA-binding protein [Gardnerella vaginalis ATCC 14019] gi|310946306|gb|ADP39010.1| SsrA-binding protein [Gardnerella vaginalis ATCC 14019] Length = 162 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 2/157 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDE 62 K G+ V+ N+KA ++Y I +EAGI LTGTEVKSLR + ++++++ E Sbjct: 3 KKPGSDGTLTVARNKKANHDYAIEDCYEAGIALTGTEVKSLREGRASLAEAFVNIDRRGE 62 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 IWL + IPEYL NH P+R RKLLL +I +L + G T+VP++IYF Sbjct: 63 IWLEGANIPEYLNGTWNNHAPKRKRKLLLHAIQIAKLSRQIEAKGYTIVPLRIYFKGS-Y 121 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AK+++ALA+GKK YDKR+ ++ R+ R +R N Sbjct: 122 AKVEIALARGKKEYDKRQALREEQDKREALRAMRYKN 158 >gi|15900853|ref|NP_345457.1| SsrA-binding protein [Streptococcus pneumoniae TIGR4] gi|111657963|ref|ZP_01408670.1| hypothetical protein SpneT_02000852 [Streptococcus pneumoniae TIGR4] gi|149010377|ref|ZP_01831748.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75] gi|182683921|ref|YP_001835668.1| ssrA-binding protein [Streptococcus pneumoniae CGSP14] gi|303254443|ref|ZP_07340549.1| SsrA-binding protein [Streptococcus pneumoniae BS455] gi|303259889|ref|ZP_07345864.1| SsrA-binding protein [Streptococcus pneumoniae SP-BS293] gi|303262303|ref|ZP_07348247.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS292] gi|303264725|ref|ZP_07350643.1| SsrA-binding protein [Streptococcus pneumoniae BS397] gi|303267332|ref|ZP_07353192.1| SsrA-binding protein [Streptococcus pneumoniae BS457] gi|303269137|ref|ZP_07354916.1| SsrA-binding protein [Streptococcus pneumoniae BS458] gi|22096171|sp|Q97R56|SSRP_STRPN RecName: Full=SsrA-binding protein gi|238691156|sp|B2IPC9|SSRP_STRPS RecName: Full=SsrA-binding protein gi|14972451|gb|AAK75097.1| SsrA-binding protein [Streptococcus pneumoniae TIGR4] gi|147764858|gb|EDK71787.1| SsrA-binding protein [Streptococcus pneumoniae SP19-BS75] gi|182629255|gb|ACB90203.1| ssrA-binding protein [Streptococcus pneumoniae CGSP14] gi|301801818|emb|CBW34529.1| SsrA-binding protein [Streptococcus pneumoniae INV200] gi|302598610|gb|EFL65650.1| SsrA-binding protein [Streptococcus pneumoniae BS455] gi|302636626|gb|EFL67117.1| SsrA-binding protein [Streptococcus pneumoniae SP14-BS292] gi|302639094|gb|EFL69554.1| SsrA-binding protein [Streptococcus pneumoniae SP-BS293] gi|302641324|gb|EFL71692.1| SsrA-binding protein [Streptococcus pneumoniae BS458] gi|302643142|gb|EFL73429.1| SsrA-binding protein [Streptococcus pneumoniae BS457] gi|302645812|gb|EFL76041.1| SsrA-binding protein [Streptococcus pneumoniae BS397] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQEIKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|331266541|ref|YP_004326171.1| SsrA-binding protein [Streptococcus oralis Uo5] gi|326683213|emb|CBZ00831.1| SsrA-binding protein [Streptococcus oralis Uo5] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+RD +R R+++ N Sbjct: 126 GKHDYDKRESIKRRDQNRDIARVMKAVN 153 >gi|197302762|ref|ZP_03167815.1| hypothetical protein RUMLAC_01491 [Ruminococcus lactaris ATCC 29176] gi|197298160|gb|EDY32707.1| hypothetical protein RUMLAC_01491 [Ruminococcus lactaris ATCC 29176] Length = 154 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 102/159 (64%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA ++Y I+ +E G+VL GTEVKSLR+ K +I +S+ E+ Sbjct: 1 MAKTEK-----KLIANNKKAYHDYFILEKYEVGLVLHGTEVKSLRMGKCSIKESFIRVED 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y + N FN P R RKLLL K+EI ++ ++ G+T+VP+++YF+ Sbjct: 56 GEMYIYGMHISPYEKGNIFNKDPLRVRKLLLHKKEILKISGKMKEQGITVVPLQVYFSGS 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+++ LA+GKK YDKR+ K+D R+ R + N Sbjct: 116 -LVKMEIGLAKGKKLYDKRDDIAKKDQKREAQREFKVRN 153 >gi|148284226|ref|YP_001248316.1| SsrA-binding protein [Orientia tsutsugamushi str. Boryong] gi|166223234|sp|A5CCM6|SSRP_ORITB RecName: Full=SsrA-binding protein gi|146739665|emb|CAM79458.1| SsrA-RNA-binding protein [Orientia tsutsugamushi str. Boryong] Length = 153 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 79/147 (53%), Positives = 106/147 (72%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ NRKA++NY I EAGIVL G+E+KS+R KV+I DSYA ++EI+L NSYI Sbjct: 6 KIVAQNRKAKFNYFIQDKMEAGIVLQGSELKSIRSGKVSIEDSYAAESSNEIFLYNSYIG 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY QANRFNH PRR RKLLL ++EI ++ + G TLV + IYFN+K K++L LA+ Sbjct: 66 EYKQANRFNHVPRRVRKLLLHRKEIQKIIGKLSVQGCTLVALSIYFNSKNKVKVELGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR K+++W +Q+ RI+R Sbjct: 126 GKKQYDKRYAIKEQEWKKQQARIMRNK 152 >gi|308067019|ref|YP_003868624.1| SsrA-binding protein [Paenibacillus polymyxa E681] gi|305856298|gb|ADM68086.1| SsrA-binding protein [Paenibacillus polymyxa E681] Length = 159 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 75/159 (47%), Positives = 101/159 (63%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K+ G KV++ N+KA ++Y I ++EAG+VLTGTE+KSLR + NISD++AT N Sbjct: 1 MGKKADG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSLRNGRSNISDAFATIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EI + N +I + Q NR N P R RKLLL K +I +L +++G T+VP+KIY Sbjct: 57 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLIGLSKQEGYTIVPLKIYVR- 115 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GKK YDKR+ KRD R R LRE Sbjct: 116 NGYAKLLLGLGRGKKQYDKRDAAAKRDAQRDIQRALREK 154 >gi|257464017|ref|ZP_05628402.1| SsrA-binding protein [Fusobacterium sp. D12] gi|317061538|ref|ZP_07926023.1| SsrA-binding protein [Fusobacterium sp. D12] gi|313687214|gb|EFS24049.1| SsrA-binding protein [Fusobacterium sp. D12] Length = 148 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KA ++Y + FEAGI L G+EVKS + KV+I +S+ N E+++ I Sbjct: 2 ILAGNKKAYFDYFVEEKFEAGIELQGSEVKSAKAGKVSIKESFVRIINGELFIMGMSIVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N +R R+LLL K+EI RL+ V + G T+VP+ ++ + G K+++ALA+G Sbjct: 62 WSYGSIYNPEEKRVRRLLLHKKEIRRLHEKVSQKGYTIVPLDVHLS-HGYVKVEIALARG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ KRD +R R L+E+N Sbjct: 121 KKTYDKRESIAKRDVERDIRRSLKENN 147 >gi|291456217|ref|ZP_06595607.1| SsrA-binding protein [Bifidobacterium breve DSM 20213] gi|291381494|gb|EFE89012.1| SsrA-binding protein [Bifidobacterium breve DSM 20213] Length = 158 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWL 65 +K++ N+KAR++Y I +EAG+ LTGTEVKSLR + ++S+++ E+WL Sbjct: 3 KEAGEKLIVQNKKARHDYAIEDKYEAGLALTGTEVKSLREGRASLSEAFVSIDRRGEMWL 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + IPEYL NH P+R RKLLL + +I +L + G T+VP+ +YF G K Sbjct: 63 EGANIPEYLNGTWNNHAPKRKRKLLLHRVQITKLARGIEAKGYTIVPLSLYFKD-GRVKA 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ALA+GK+ +DKR+ ++ R+ R +R N Sbjct: 122 EIALARGKREFDKRQALREEQDKREALRAMRYAN 155 >gi|213858001|ref|ZP_03384972.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 154 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 2/140 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK- 134 Query: 120 KGLAKIDLALAQGKKNYDKR 139 K+ + +A+GKK +DKR Sbjct: 135 NAWCKVKIGVAKGKKQHDKR 154 >gi|160892729|ref|ZP_02073519.1| hypothetical protein CLOL250_00260 [Clostridium sp. L2-50] gi|156865770|gb|EDO59201.1| hypothetical protein CLOL250_00260 [Clostridium sp. L2-50] Length = 155 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K++++N+KA ++Y I +EAGI LTGTEVKS+R +I +S+ + + EI++ Sbjct: 3 KERGNKLIANNKKAYFDYFIEEKYEAGIALTGTEVKSVRQGHCSIKESFISIDKGEIYIY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 I Y + N FN P R RKLLL K EI++L A + G T+VP+K+Y GL K++ Sbjct: 63 RMNISPYEKGNIFNKDPLRTRKLLLHKYEINKLMGAQQVKGYTIVPLKVYIRD-GLVKME 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR+ K+D R+ R + N Sbjct: 122 IGLAKGKKLYDKRQDIAKKDVKRENEREFKIRN 154 >gi|327438856|dbj|BAK15221.1| tmRNA-binding protein [Solibacillus silvestris StLB046] Length = 154 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I + EAG+VLTGTE+KS+R ++V + ++Y + E W+ N +I Sbjct: 7 KVLAQNKKASHDYFIEETIEAGLVLTGTEIKSVRGARVQLKEAYISVMGGEAWVKNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q NR+NH P R RKLLL K++I L AV+RDG T+VP+K+Y G AK+ + LA+ Sbjct: 67 PFDQGNRYNHDPLRERKLLLHKKQISELVGAVKRDGYTIVPLKMYIKD-GYAKLLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK+YDKR KK++ R R ++ Sbjct: 126 GKKDYDKRHDMKKKEAKRDMERAFKDR 152 >gi|119503063|ref|ZP_01625148.1| SsrA-binding protein [marine gamma proteobacterium HTCC2080] gi|119461409|gb|EAW42499.1| SsrA-binding protein [marine gamma proteobacterium HTCC2080] Length = 163 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 KS+ ++ N++AR++YH++ S+EAG+ L G EVKS+R +V ++DSY +N E Sbjct: 6 KSKKKIQDNTIAQNKRARFDYHLLESYEAGLSLAGWEVKSMRAGRVQLTDSYVLMKNGEA 65 Query: 64 WLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L + I ++ + P R RKLLL+KRE+ ++ AA+ + G T V +Y+ L Sbjct: 66 FLFGAQISPLETVSSHYVTDPTRTRKLLLNKRELAQINAALSQKGQTCVCTALYWKGH-L 124 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK ++LA GKK +DKR+TEK +DWDRQK RI+R++ Sbjct: 125 AKAKISLAAGKKQHDKRDTEKAKDWDRQKARIVRDN 160 >gi|57233786|ref|YP_182206.1| SsrA-binding protein [Dehalococcoides ethenogenes 195] gi|123618235|sp|Q3Z6E3|SSRP_DEHE1 RecName: Full=SsrA-binding protein gi|57224234|gb|AAW39291.1| SsrA-binding protein [Dehalococcoides ethenogenes 195] Length = 172 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I Sbjct: 24 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 83 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G Sbjct: 84 YECSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 142 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR+T KRD +R+ R ++ N Sbjct: 143 KKLYDKRDTITKRDTERELEREVKYRN 169 >gi|212716466|ref|ZP_03324594.1| hypothetical protein BIFCAT_01390 [Bifidobacterium catenulatum DSM 16992] gi|212660719|gb|EEB21294.1| hypothetical protein BIFCAT_01390 [Bifidobacterium catenulatum DSM 16992] Length = 159 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 95/160 (59%), Gaps = 6/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ K ++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++S+ Sbjct: 1 MAK----EQGMKPIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAESFITIDR 56 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL + IPEYL NH P+R RKLLL +I +L + G T++P+ +YF Sbjct: 57 RGEMWLEGANIPEYLNGTWNNHAPKRKRKLLLHAAQIDKLARQSQAKGFTIIPLSLYFKD 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K ++ALA+GKK +DKR+ ++ R+ R +R N Sbjct: 117 -GRVKAEIALARGKKEFDKRQALREEQDKREALRAMRYAN 155 >gi|95929210|ref|ZP_01311954.1| SsrA-binding protein [Desulfuromonas acetoxidans DSM 684] gi|95134708|gb|EAT16363.1| SsrA-binding protein [Desulfuromonas acetoxidans DSM 684] Length = 150 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 68/149 (45%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K+++ N+KA + Y+I ++EAG+VLTGTEVKSLR+ VNI +S+ E+++ N Sbjct: 2 GIKIIATNKKAYHEYYIEETYEAGMVLTGTEVKSLRLGNVNIKESFCRIMKGELFINNMN 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q NR NH P R RKLLL K EI +L V G++LVP KIYF G K+++ + Sbjct: 62 IGPYEQGNRENHDPTRIRKLLLHKYEIDKLVRKVEEKGLSLVPTKIYFK-NGYVKLEVGV 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ KK+ DR+ +I +E+ Sbjct: 121 GRGKKLHDKRESLKKKQADREMAKIFKEN 149 >gi|88798369|ref|ZP_01113954.1| SsrA-binding protein [Reinekea sp. MED297] gi|88778809|gb|EAR09999.1| SsrA-binding protein [Reinekea sp. MED297] Length = 162 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 94/159 (59%), Gaps = 2/159 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 S K + ++ N+KAR++YHIV +EAG+ L G EVKSLR K+ + DSY F++ Sbjct: 4 SKKKHTSTAGGSIAQNKKARHDYHIVDKYEAGLSLLGWEVKSLRAGKLQLVDSYIIFKDG 63 Query: 62 EIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L ++I + P R+RKLLL + EI R+ ++ G T V + +Y+ Sbjct: 64 EAYLIGAHITPLNTASTHVIADPSRSRKLLLHRNEIDRIERQAQQTGYTSVCLAVYWKGN 123 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K ++AL +GK+ +DKR K++DW R+K R+L++ N Sbjct: 124 -KIKAEVALVKGKQLHDKRAASKEKDWGREKQRVLKQFN 161 >gi|317133142|ref|YP_004092456.1| SsrA-binding protein [Ethanoligenens harbinense YUAN-3] gi|315471121|gb|ADU27725.1| SsrA-binding protein [Ethanoligenens harbinense YUAN-3] Length = 154 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K+ VS N+KA ++Y + +FEAG+ L GTEVKS+R +VN+ D++ +N E+++ +I Sbjct: 6 KRSVSKNKKAWHDYFVQEAFEAGVELFGTEVKSVRAGRVNLKDAWCDIDNGELFVRGMHI 65 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + N FN P R R+LL+ KREI RL+ +++ G+TLVP+++YF L KI++ L Sbjct: 66 SPYEKGNIFNRDPLRRRRLLMHKREIMRLFGQLKQQGLTLVPLEVYFKGP-LVKIEIGLC 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKR KRD R+ R ++E N Sbjct: 125 KGKKLYDKRADIAKRDASREIDRAIKERN 153 >gi|73663215|ref|YP_301996.1| SsrA-binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642026|sp|Q49W09|SSRP_STAS1 RecName: Full=SsrA-binding protein gi|72495730|dbj|BAE19051.1| tmRNA-binding protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 154 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA E Sbjct: 1 MPKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVNRGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N +I Y + NRFNH PRR+RKLLL KREI +L R G ++VP+K+Y G Sbjct: 59 MFLNNMHIAPYEEGNRFNHDPRRSRKLLLHKREIAKLGERTREVGYSIVPLKLYLK-HGH 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVQRDVAREMKAR 153 >gi|229828806|ref|ZP_04454875.1| hypothetical protein GCWU000342_00889 [Shuttleworthia satelles DSM 14600] gi|229791969|gb|EEP28083.1| hypothetical protein GCWU000342_00889 [Shuttleworthia satelles DSM 14600] Length = 156 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KAR+ Y + +EAGI L GTEVKSLR+ K +I +++ +N E++L +I Sbjct: 9 LIANNKKARHEYFLDEFYEAGIELAGTEVKSLRMGKCSIKEAWVRIQNGEVFLYQMHISP 68 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FN P R RKLLL K +I +L ++ G T+VP+++YF K LAK+++ALA+G Sbjct: 69 YEKGNLFNRDPLRPRKLLLHKAQIRKLEQQIKTKGYTIVPVRVYFK-KSLAKVEIALARG 127 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR +RD +RQ + + N Sbjct: 128 KKLYDKRADLARRDQERQAQKEFKIRN 154 >gi|42520608|ref|NP_966523.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698568|ref|ZP_00373468.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|99035936|ref|ZP_01314982.1| hypothetical protein Wendoof_01000167 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|225630384|ref|YP_002727175.1| SsrA-binding protein [Wolbachia sp. wRi] gi|59798788|sp|Q73H09|SSRP_WOLPM RecName: Full=SsrA-binding protein gi|254778390|sp|C0R392|SSRP_WOLWR RecName: Full=SsrA-binding protein gi|42410347|gb|AAS14457.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|58534920|gb|EAL59019.1| SsrA-binding protein [Wolbachia endosymbiont of Drosophila ananassae] gi|225592365|gb|ACN95384.1| SsrA-binding protein [Wolbachia sp. wRi] Length = 149 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 78/146 (53%), Positives = 108/146 (73%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V+++NRKAR+ Y I+ FEAG+VL +EVKSLR KVNISD+Y +N E+WL N +I E Sbjct: 3 VIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVVEKNSEVWLHNMHIAE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y ANR NH P+R RKLLL K+EI++L ++ G+T+VP+ +YFN KG AK +A+ +G Sbjct: 63 YKAANRKNHKPKRERKLLLHKKEINKLIGQIKTAGITVVPLSVYFNDKGFAKTKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR T K+R+WDR+K R+ + + Sbjct: 123 KKLYDKRATIKQREWDREKSRLSKNN 148 >gi|134094580|ref|YP_001099655.1| SsrA-binding protein [Herminiimonas arsenicoxydans] gi|133738483|emb|CAL61528.1| SsrA-binding protein [Herminiimonas arsenicoxydans] Length = 149 Score = 164 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I FEAGIVL G EVK++R + + ++Y NDEI+L ++I Sbjct: 3 IVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL EI +L V R G TLVP+ +++ KG K ++ LA+G Sbjct: 63 ASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHY-QKGYIKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR++EK+RD R+ +++++ Sbjct: 122 KKQHDKRDSEKQRDTQREIQAVMKQN 147 >gi|221066864|ref|ZP_03542969.1| SsrA-binding protein [Comamonas testosteroni KF-1] gi|264678538|ref|YP_003278445.1| SsrA-binding protein [Comamonas testosteroni CNB-2] gi|299530960|ref|ZP_07044373.1| SsrA-binding protein [Comamonas testosteroni S44] gi|220711887|gb|EED67255.1| SsrA-binding protein [Comamonas testosteroni KF-1] gi|262209051|gb|ACY33149.1| SsrA-binding protein [Comamonas testosteroni CNB-2] gi|298720917|gb|EFI61861.1| SsrA-binding protein [Comamonas testosteroni S44] Length = 157 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 88/160 (55%), Gaps = 5/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++DN+KA +NY EAG+VL G EVK+LR KV ++D Y ++ Sbjct: 1 MAKKPETSSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALRSGKVQLTDGYVLIKD 57 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L I + N R +KLLL K EI RL V + G TLVP+ +++ Sbjct: 58 GELFLLGCQINPLKTASTHVNPDSARIKKLLLKKDEIKRLVGKVEQKGYTLVPINLHWK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K ++ALA+GK +DKR+ K R+ R+ R ++ N Sbjct: 117 NGYVKCEIALAKGKAEHDKRDVIKDREGKREVERAMKNRN 156 >gi|118497754|ref|YP_898804.1| SsrA-binding protein [Francisella tularensis subsp. novicida U112] gi|194323726|ref|ZP_03057502.1| SsrA-binding protein [Francisella tularensis subsp. novicida FTE] gi|208779819|ref|ZP_03247163.1| SsrA-binding protein [Francisella novicida FTG] gi|254373113|ref|ZP_04988602.1| SsrA-binding protein [Francisella tularensis subsp. novicida GA99-3549] gi|254374564|ref|ZP_04990045.1| SsrA-binding protein [Francisella novicida GA99-3548] gi|166223219|sp|A0Q735|SSRP_FRATN RecName: Full=SsrA-binding protein gi|118423660|gb|ABK90050.1| SsrA (tmRNA)-binding protein [Francisella novicida U112] gi|151570840|gb|EDN36494.1| SsrA-binding protein [Francisella novicida GA99-3549] gi|151572283|gb|EDN37937.1| SsrA-binding protein [Francisella novicida GA99-3548] gi|194322090|gb|EDX19572.1| SsrA-binding protein [Francisella tularensis subsp. novicida FTE] gi|208744274|gb|EDZ90574.1| SsrA-binding protein [Francisella novicida FTG] Length = 157 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ ++ E W Sbjct: 2 SKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKHGEAW 61 Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N P + RKLLL++REI+++ + + G T VP+ +Y+ Sbjct: 62 LFNCLITPLLSASTHVVADAAATRKLLLNRREINKIMGRIEQKGFTCVPLAMYWKGP-RV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALAQGKK +DKR+ +K +DW R+K R+ ++ Sbjct: 121 KVEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 154 >gi|282850296|ref|ZP_06259675.1| SsrA-binding protein [Veillonella parvula ATCC 17745] gi|294793804|ref|ZP_06758941.1| SsrA-binding protein [Veillonella sp. 3_1_44] gi|282579789|gb|EFB85193.1| SsrA-binding protein [Veillonella parvula ATCC 17745] gi|294455374|gb|EFG23746.1| SsrA-binding protein [Veillonella sp. 3_1_44] Length = 156 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS + +++DNRKAR+++HI ++EAGI LTGTE+KS+R K+N+ DS+ + Sbjct: 1 MAKKSSPS----LIADNRKARHDFHIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+ Sbjct: 57 GEILLYGVHISPYEQGNRFNHEPERTRKLLMHKSEINKLHAQVKEKGFSLVPLNFHFS-H 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ + L GKK YDKR+ +RD R + ++E Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRIKE 152 >gi|294140124|ref|YP_003556102.1| SsrA-binding protein [Shewanella violacea DSS12] gi|293326593|dbj|BAJ01324.1| SsrA-binding protein [Shewanella violacea DSS12] Length = 165 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 3/160 (1%) Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY Sbjct: 1 MAKKNAKNSKNSSASIARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFM 60 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E +L I + P R+RKLLL ++E+ +L V R G ++VP+ +Y+ Sbjct: 61 RDGEAFLFGCTIAPLNTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI++ L +GKK +DKR+ K R+W +K R +++ Sbjct: 121 QKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTMKK 160 >gi|15923772|ref|NP_371306.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926458|ref|NP_373991.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus N315] gi|148267241|ref|YP_001246184.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH9] gi|150393290|ref|YP_001315965.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|156979109|ref|YP_001441368.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315160|ref|ZP_04838373.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731411|ref|ZP_04865576.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005572|ref|ZP_05144173.2| SsrA-binding protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794897|ref|ZP_05643876.1| SsrA-binding protein [Staphylococcus aureus A9781] gi|258418214|ref|ZP_05682479.1| ssrA-binding protein [Staphylococcus aureus A9763] gi|258421511|ref|ZP_05684436.1| SsrA-binding protein [Staphylococcus aureus A9719] gi|258439146|ref|ZP_05690190.1| ssrA-binding protein [Staphylococcus aureus A9299] gi|258440926|ref|ZP_05690761.1| ssrA-binding protein [Staphylococcus aureus A8115] gi|258445756|ref|ZP_05693933.1| ssrA-binding protein [Staphylococcus aureus A6300] gi|258449568|ref|ZP_05697670.1| ssrA-binding protein [Staphylococcus aureus A6224] gi|258453968|ref|ZP_05701940.1| ssrA-binding protein [Staphylococcus aureus A5937] gi|269202404|ref|YP_003281673.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ED98] gi|282895077|ref|ZP_06303298.1| SsrA-binding protein [Staphylococcus aureus A8117] gi|282926649|ref|ZP_06334279.1| SsrA-binding protein [Staphylococcus aureus A10102] gi|295406505|ref|ZP_06816311.1| SsrA-binding protein [Staphylococcus aureus A8819] gi|296276296|ref|ZP_06858803.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MR1] gi|297245231|ref|ZP_06929105.1| SsrA-binding protein [Staphylococcus aureus A8796] gi|54039641|sp|P66863|SSRP_STAAN RecName: Full=SsrA-binding protein gi|54042228|sp|P66862|SSRP_STAAM RecName: Full=SsrA-binding protein gi|166223459|sp|A7WZT9|SSRP_STAA1 RecName: Full=SsrA-binding protein gi|189046848|sp|A6TZR0|SSRP_STAA2 RecName: Full=SsrA-binding protein gi|189046849|sp|A5IQY5|SSRP_STAA9 RecName: Full=SsrA-binding protein gi|13700672|dbj|BAB41969.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus N315] gi|14246551|dbj|BAB56944.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus Mu50] gi|147740310|gb|ABQ48608.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH9] gi|149945742|gb|ABR51678.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus JH1] gi|156721244|dbj|BAF77661.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724861|gb|EES93590.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257788869|gb|EEV27209.1| SsrA-binding protein [Staphylococcus aureus A9781] gi|257839007|gb|EEV63486.1| ssrA-binding protein [Staphylococcus aureus A9763] gi|257842437|gb|EEV66861.1| SsrA-binding protein [Staphylococcus aureus A9719] gi|257847718|gb|EEV71715.1| ssrA-binding protein [Staphylococcus aureus A9299] gi|257852440|gb|EEV76361.1| ssrA-binding protein [Staphylococcus aureus A8115] gi|257855332|gb|EEV78270.1| ssrA-binding protein [Staphylococcus aureus A6300] gi|257857076|gb|EEV79975.1| ssrA-binding protein [Staphylococcus aureus A6224] gi|257863833|gb|EEV86589.1| ssrA-binding protein [Staphylococcus aureus A5937] gi|262074694|gb|ACY10667.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ED98] gi|282591542|gb|EFB96614.1| SsrA-binding protein [Staphylococcus aureus A10102] gi|282762573|gb|EFC02712.1| SsrA-binding protein [Staphylococcus aureus A8117] gi|285816483|gb|ADC36970.1| tmRNA-binding protein SmpB [Staphylococcus aureus 04-02981] gi|294968650|gb|EFG44673.1| SsrA-binding protein [Staphylococcus aureus A8819] gi|297177902|gb|EFH37151.1| SsrA-binding protein [Staphylococcus aureus A8796] gi|312829273|emb|CBX34115.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129011|gb|EFT85008.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus CGS03] gi|329724545|gb|EGG61052.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 21172] Length = 154 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +N E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N +I Y + NRFNH P R+RKLLL KREI +L R G ++VP+K+Y G Sbjct: 59 MYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIFKLGEQTREIGYSIVPLKLYLK-HGH 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKAR 153 >gi|189425745|ref|YP_001952922.1| SsrA-binding protein [Geobacter lovleyi SZ] gi|189422004|gb|ACD96402.1| SsrA-binding protein [Geobacter lovleyi SZ] Length = 151 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 68/147 (46%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K++ N++A + YHI EAGIVL GTEVKSLR K N+ D++ N E WL N + Sbjct: 2 SEKLICANKRAFHEYHIEERLEAGIVLVGTEVKSLRAGKANLVDAFVLVRNGEAWLHNLH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NR NH P R RKLLL REI +L+A +R+DG T VP+++YF G K+++ + Sbjct: 62 IAPYDFGNRQNHDPERQRKLLLHSREIEKLHARIRQDGCTAVPLRLYFKE-GKVKVEVGV 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156 A+GKK +DKRE KK+D R+ + + Sbjct: 121 AKGKKLHDKREDLKKKDLKREHAKEFK 147 >gi|90581515|ref|ZP_01237308.1| SsrA-binding protein [Vibrio angustum S14] gi|90437277|gb|EAS62475.1| SsrA-binding protein [Vibrio angustum S14] Length = 160 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N+ AR+ + I +EAG+ L G EVK++R KVN+++SY N Sbjct: 1 MAKKPNKKPGSNTIAKNKTARFEFAINDEYEAGMQLQGWEVKAIRDGKVNMTESYVFLRN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +++ I + P R RKLLL++REI +L AV RDG T+V + +Y+ A Sbjct: 61 GEAFISGLTITPLNAASTHVVADPTRVRKLLLNRREIDKLAGAVNRDGETIVALNMYWKA 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + A+GKK +DKR K +DW R K RIL+ N Sbjct: 121 S-FVKIKIGTARGKKLHDKRADSKSKDWQRDKARILKSSN 159 >gi|197124127|ref|YP_002136078.1| SsrA-binding protein [Anaeromyxobacter sp. K] gi|220918907|ref|YP_002494211.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] gi|238689860|sp|B4UDZ1|SSRP_ANASK RecName: Full=SsrA-binding protein gi|254772992|sp|B8J7G5|SSRP_ANAD2 RecName: Full=SsrA-binding protein gi|196173976|gb|ACG74949.1| SsrA-binding protein [Anaeromyxobacter sp. K] gi|219956761|gb|ACL67145.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 163 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 66/141 (46%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76 NR+AR++Y + ++EAG+VLTG+EVKSLR VN+SD+YA +E+WL N I EY QA Sbjct: 20 NRRARFDYDVEDTWEAGLVLTGSEVKSLREGNVNLSDAYAMPRGEELWLLNCRIGEYQQA 79 Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 F H P R+RKLL+++ EI R+ V + G TLVP++IYF G AK++L LA+G+ + Sbjct: 80 AHFGHAPLRDRKLLMNRAEIDRVRGKVEQRGYTLVPLRIYFKQ-GWAKVELGLARGRSHE 138 Query: 137 DKRETEKKRDWDRQKHRILRE 157 D+R +R+ R+ R L Sbjct: 139 DRRGAIAERESKREMDRALAR 159 >gi|84616869|emb|CAJ13763.1| SsrA-binding protein [Desulfococcus multivorans] Length = 153 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 96/151 (63%), Gaps = 1/151 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +K++++N+KAR+NY I+ FEAG+VL GTEVKSLR+ K ++ D+YA N E+++ Sbjct: 2 KKEGRKLIANNKKARFNYFIIDKFEAGMVLLGTEVKSLRMGKTHLKDAYAKIVNGEVFVY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y A NH P R RKLLL EI RLY V G++L+PM +YF G K+ Sbjct: 62 QMHIGPYPFAYYDNHDPMRPRKLLLHNYEIKRLYGKVNEQGLSLIPMDLYFKD-GKVKMT 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LAL +GK+ +DKR+ ++RD R R ++ Sbjct: 121 LALCKGKRLHDKRDAIRERDTRRDMDRSRKD 151 >gi|307709155|ref|ZP_07645614.1| ssrA-binding protein [Streptococcus mitis SK564] gi|307620101|gb|EFN99218.1| ssrA-binding protein [Streptococcus mitis SK564] Length = 155 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG++LTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMILTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKQREQNRDIARVMKAVN 153 >gi|319939209|ref|ZP_08013572.1| SsrA-binding protein [Streptococcus anginosus 1_2_62CV] gi|319811605|gb|EFW07881.1| SsrA-binding protein [Streptococcus anginosus 1_2_62CV] Length = 155 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + E G+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTIETGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQDPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYLKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K R+ +R R ++ +N Sbjct: 126 GKHDYDKRESIKLREQNRDIARTIKAYN 153 >gi|251781953|ref|YP_002996255.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390582|dbj|BAH81041.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126779|gb|ADX24076.1| SsrA-binding protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 155 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 71/147 (48%), Positives = 102/147 (69%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 LLAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLINVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERIRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K +YDKRET K+R+ DR R+++ N Sbjct: 127 KHDYDKRETIKRREQDRDIKRVMKSVN 153 >gi|58616798|ref|YP_195997.1| SsrA-binding protein [Ehrlichia ruminantium str. Gardel] gi|75432643|sp|Q5FF69|SSRP_EHRRG RecName: Full=SsrA-binding protein gi|58416410|emb|CAI27523.1| SsrA-binding protein [Ehrlichia ruminantium str. Gardel] Length = 148 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 78/144 (54%), Positives = 109/144 (75%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I++SY T N E+WL N +I E Sbjct: 3 IIIENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAESYVTERNMELWLCNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y QAN NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KG+AK + + +G Sbjct: 63 YTQANTKNHNPTRPRKLLLKKKQIYKISGNMKNDGFTVVPLFLYFNDKGIAKAKIVIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRET K RDW+R+K+RILR Sbjct: 123 KKLHDKRETIKARDWNREKNRILR 146 >gi|59712609|ref|YP_205385.1| SsrA-binding protein [Vibrio fischeri ES114] gi|67461860|sp|Q5E399|SSRP_VIBF1 RecName: Full=SsrA-binding protein gi|59480710|gb|AAW86497.1| SsrA-binding protein [Vibrio fischeri ES114] Length = 161 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N++AR+ Y I EAGI L G EVKSLR KVNI++SY Sbjct: 1 MAKKKSKDKAGSNTIAMNKQARHEYFIDDEIEAGIELQGWEVKSLRSGKVNIAESYVYVR 60 Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + EI+++ I + P R RKLL+S++EI L V R+GMTLV +Y+ Sbjct: 61 DGEIFISGMTITPLQAASTHVIANPTRIRKLLMSRKEIDNLIGRVNREGMTLVATTMYW- 119 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + AKI + +A+GKK +DKR K++DW+R K RI++ Sbjct: 120 VRSWAKIKVGVAKGKKLHDKRTDSKEKDWNRDKARIMK 157 >gi|306827850|ref|ZP_07461119.1| SsrA-binding protein [Streptococcus pyogenes ATCC 10782] gi|304429959|gb|EFM32999.1| SsrA-binding protein [Streptococcus pyogenes ATCC 10782] Length = 155 Score = 164 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR+ YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARHEYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLENELKGSGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K YDKRET K+RD +R + ++ +N Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153 >gi|86160098|ref|YP_466883.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|123496775|sp|Q2IFT5|SSRP_ANADE RecName: Full=SsrA-binding protein gi|85776609|gb|ABC83446.1| SsrA-binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 163 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 95/141 (67%), Gaps = 1/141 (0%) Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76 NR+AR++Y I ++EAG+VLTG+EVKSLR VN+SD+YA +E+WL N I EY QA Sbjct: 20 NRRARFDYDIEDTWEAGLVLTGSEVKSLREGNVNLSDAYAMPRGEELWLLNCRIGEYKQA 79 Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 F H P R+RKLL+++ EI R+ V + G TLVP++IYF G AK++L LA+G+ + Sbjct: 80 AHFGHAPLRDRKLLMNRAEIDRVRGKVEQRGYTLVPLRIYFKQ-GWAKVELGLARGRSHE 138 Query: 137 DKRETEKKRDWDRQKHRILRE 157 D+R +R+ R+ R L Sbjct: 139 DRRGAIAERESKREMDRALAR 159 >gi|329119829|ref|ZP_08248503.1| SsrA-binding protein [Neisseria bacilliformis ATCC BAA-1200] gi|327463985|gb|EGF10296.1| SsrA-binding protein [Neisseria bacilliformis ATCC BAA-1200] Length = 148 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKA ++Y I EAG+VL G EVK++R +V + +SY ++ D +L S+I Sbjct: 3 IANNRKAYHDYFIEDEIEAGLVLDGWEVKAVRAGRVQLKESYIHWKKDAFYLVGSHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI++L V R G TLVP+ +++ +G K+D+ LA+G Sbjct: 63 PTASTHVRPDPVRARKLLLKQGEINKLIGKVERSGYTLVPLNLHYK-RGYIKMDIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKN 146 >gi|205375139|ref|ZP_03227930.1| SsrA-binding protein [Bacillus coahuilensis m4-4] Length = 154 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 104/147 (70%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ NRKA ++Y I ++EAGIVL GTE+KS+R S+VN+ +S+A +N E+++ N +I Sbjct: 7 NVIAQNRKANHDYFIEETYEAGIVLQGTEIKSVRQSRVNLKESFAKIQNGEVFVYNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL K++I++L + G +LVP+K+Y G AK+ L LA+ Sbjct: 67 AYEQGNRYNHDPIRTRKLLLHKKQINKLIGLTKEKGYSLVPLKLYIKD-GYAKVLLGLAR 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKNYDKRE+ KK++ +RQ R ++ Sbjct: 126 GKKNYDKRESLKKKEANRQIERAFKDR 152 >gi|313893295|ref|ZP_07826870.1| SsrA-binding protein [Veillonella sp. oral taxon 158 str. F0412] gi|313442191|gb|EFR60608.1| SsrA-binding protein [Veillonella sp. oral taxon 158 str. F0412] Length = 156 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS + +++DNRKAR+++HI ++EAGI LTGTE+KS+R K+N+ DS+ + Sbjct: 1 MAKKSSPS----LIADNRKARHDFHIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+ Sbjct: 57 GEILLYGVHISPYEQGNRFNHEPERTRKLLMHKAEINKLHAQVKEKGFSLVPLNFHFS-H 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ + L GKK YDKR+ +RD R + ++E Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRIKE 152 >gi|238917113|ref|YP_002930630.1| SsrA-binding protein [Eubacterium eligens ATCC 27750] gi|238872473|gb|ACR72183.1| SsrA-binding protein [Eubacterium eligens ATCC 27750] Length = 164 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K+ +++++N+KA ++Y I +EAG+VL GTEVKS+R K +I +SY EN Sbjct: 5 MASKT-SASGNRLIANNKKAYFDYFIEEKYEAGMVLHGTEVKSIRAGKCSIKESYIKIEN 63 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ I Y + N FN P R +KLLL K +I++L + G TLVP+++Y Sbjct: 64 GEVYVLGMNITPYEKGNIFNKDPLRPKKLLLHKNQINKLTGELTIKGYTLVPLQVYLKE- 122 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K+++ L +GKKN+DKR++ K+D R + + N Sbjct: 123 GKVKMEIGLGKGKKNFDKRDSIAKKDQIRDAQKEFKNKN 161 >gi|315613004|ref|ZP_07887915.1| SsrA-binding protein [Streptococcus sanguinis ATCC 49296] gi|315315114|gb|EFU63155.1| SsrA-binding protein [Streptococcus sanguinis ATCC 49296] Length = 155 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA ++Y IV + EAGIVLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGIVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|257453219|ref|ZP_05618518.1| SsrA-binding protein [Fusobacterium sp. 3_1_5R] gi|257467191|ref|ZP_05631502.1| SsrA-binding protein [Fusobacterium gonidiaformans ATCC 25563] gi|315918321|ref|ZP_07914561.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|317059753|ref|ZP_07924238.1| SsrA-binding protein [Fusobacterium sp. 3_1_5R] gi|313685429|gb|EFS22264.1| SsrA-binding protein [Fusobacterium sp. 3_1_5R] gi|313692196|gb|EFS29031.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 148 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KA ++Y + EAGI L G+EVKS + KV+I +S+ N E+++ I Sbjct: 2 ILAGNKKAYFDYFVEDKLEAGIELQGSEVKSAKAGKVSIKESFIRIINGELFIMGMSIVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR R+LLL K+EI RL+ V + G T+VP+ ++ + G K+++ALA+G Sbjct: 62 WSFGSIYNPEERRVRRLLLHKKEIRRLHEKVSQKGYTIVPLDVHLS-HGYVKLEIALARG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ KRD +R R L+E+N Sbjct: 121 KKTYDKRESIAKRDSERDIRRSLKENN 147 >gi|89072611|ref|ZP_01159183.1| SsrA-binding protein [Photobacterium sp. SKA34] gi|89051715|gb|EAR57168.1| SsrA-binding protein [Photobacterium sp. SKA34] Length = 160 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N+ AR+ + I +EAG+VL G EVK++R KVN+++SY N Sbjct: 1 MAKKPNKKPGSNTIAKNKSARFEFAIGDEYEAGMVLQGWEVKAIRDGKVNMTESYVFLRN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 DE +++ I + P R RKLLL++RE+ +L +V R+G T+V + +Y++ Sbjct: 61 DEAFISGLTIAPLNAASTHVVADPTRVRKLLLNRRELRKLADSVNREGDTIVALNMYWST 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + A+GKK +DKR K +DW R K RIL+ +N Sbjct: 121 S-FVKIKIGTARGKKLHDKRADSKAKDWQRDKARILKGNN 159 >gi|198275591|ref|ZP_03208122.1| hypothetical protein BACPLE_01756 [Bacteroides plebeius DSM 17135] gi|198271220|gb|EDY95490.1| hypothetical protein BACPLE_01756 [Bacteroides plebeius DSM 17135] Length = 152 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 96/148 (64%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 + N++A ++Y + ++ AGIVLTGTE+KS+R K ++ D++ F E+W+ N + Sbjct: 5 SNNINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWVKNMH 64 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY + NH RR+RKLLL+K+E+ +L G T+VP ++Y N +GLAK+ +AL Sbjct: 65 IAEYFYGSYNNHTARRDRKLLLTKKELRKLQRTSDEPGFTIVPTRMYINERGLAKVVIAL 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GKK YDKR+T K+++ R R+ + Sbjct: 125 AKGKKQYDKRQTLKEKEDRRMMDRMFKR 152 >gi|330994826|ref|ZP_08318748.1| SsrA-binding protein [Gluconacetobacter sp. SXCC-1] gi|329758087|gb|EGG74609.1| SsrA-binding protein [Gluconacetobacter sp. SXCC-1] Length = 164 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 73/160 (45%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 1 MSLKSRGN--PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K+RG+ + + NRK R+NY IV + EAG+VL G EVKSLR+ + I+++YA Sbjct: 1 MAAKNRGSGMISTGIAAQNRKGRFNYTIVETVEAGLVLKGPEVKSLRMGRATINEAYAGE 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E+WL NSYIPEY PR RKLLL K+++ +L R+G+TLVP+ I+FN Sbjct: 61 RNGELWLINSYIPEYQGGVLSRFEPRAPRKLLLHKKQVDKLLGETARNGVTLVPLDIHFN 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++GLAK+ L + +G+K DKR+ RDW R K R++R Sbjct: 121 SRGLAKLTLGVGEGRKKADKRQAIADRDWARDKARLIRNK 160 >gi|228474436|ref|ZP_04059171.1| SsrA-binding protein [Staphylococcus hominis SK119] gi|314936916|ref|ZP_07844263.1| SsrA-binding protein [Staphylococcus hominis subsp. hominis C80] gi|228271795|gb|EEK13142.1| SsrA-binding protein [Staphylococcus hominis SK119] gi|313655535|gb|EFS19280.1| SsrA-binding protein [Staphylococcus hominis subsp. hominis C80] Length = 156 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I Y + NRFNH P R+RKLLL K+EI +L R G +++P+K+Y Sbjct: 59 GEMYINNMHIAPYEEGNRFNHDPLRSRKLLLHKKEIIKLGERTREIGYSIIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKK +DKR+ K + R R ++ Sbjct: 118 GQCKVLLGIARGKKLHDKRQALKDKAMKRDVDRAMKAR 155 >gi|21282472|ref|NP_645560.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MW2] gi|49483039|ref|YP_040263.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49485653|ref|YP_042874.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57650123|ref|YP_185721.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus COL] gi|82750489|ref|YP_416230.1| SsrA-binding protein [Staphylococcus aureus RF122] gi|87162186|ref|YP_493466.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194564|ref|YP_499360.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151220962|ref|YP_001331784.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus str. Newman] gi|161509052|ref|YP_001574711.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142196|ref|ZP_03566689.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253732769|ref|ZP_04866934.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|257424902|ref|ZP_05601329.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427570|ref|ZP_05603969.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257430201|ref|ZP_05606585.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432902|ref|ZP_05609262.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257435806|ref|ZP_05611854.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|258423431|ref|ZP_05686322.1| SsrA-binding protein [Staphylococcus aureus A9635] gi|258452171|ref|ZP_05700187.1| tmRNA-binding protein [Staphylococcus aureus A5948] gi|262050047|ref|ZP_06022904.1| SsrA-binding protein [Staphylococcus aureus D30] gi|262052707|ref|ZP_06024898.1| SsrA-binding protein [Staphylococcus aureus 930918-3] gi|282903413|ref|ZP_06311304.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|282905192|ref|ZP_06313049.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282908172|ref|ZP_06316003.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910429|ref|ZP_06318233.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282913625|ref|ZP_06321414.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282916125|ref|ZP_06323888.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282918576|ref|ZP_06326313.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282922080|ref|ZP_06329777.1| SsrA-binding protein [Staphylococcus aureus A9765] gi|282923542|ref|ZP_06331222.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|283769945|ref|ZP_06342837.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus H19] gi|283957615|ref|ZP_06375068.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|284023804|ref|ZP_06378202.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 132] gi|293500667|ref|ZP_06666518.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|293509616|ref|ZP_06668327.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|293524202|ref|ZP_06670889.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|294850510|ref|ZP_06791239.1| SsrA-binding protein [Staphylococcus aureus A9754] gi|295427361|ref|ZP_06819996.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|297208490|ref|ZP_06924919.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590283|ref|ZP_06948922.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|300912582|ref|ZP_07130025.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|304381595|ref|ZP_07364245.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|23822165|sp|Q8NXL2|SSRP_STAAW RecName: Full=SsrA-binding protein gi|56749536|sp|Q6GB49|SSRP_STAAS RecName: Full=SsrA-binding protein gi|56749583|sp|Q6GIK9|SSRP_STAAR RecName: Full=SsrA-binding protein gi|67461881|sp|Q5HHN6|SSRP_STAAC RecName: Full=SsrA-binding protein gi|122539962|sp|Q2G023|SSRP_STAA8 RecName: Full=SsrA-binding protein gi|123486724|sp|Q2FIL2|SSRP_STAA3 RecName: Full=SsrA-binding protein gi|123548795|sp|Q2YWK9|SSRP_STAAB RecName: Full=SsrA-binding protein gi|172048801|sp|A6QF90|SSRP_STAAE RecName: Full=SsrA-binding protein gi|189046850|sp|A8Z1A9|SSRP_STAAT RecName: Full=SsrA-binding protein gi|21203909|dbj|BAB94608.1| ssrA-binding protein [Staphylococcus aureus subsp. aureus MW2] gi|49241168|emb|CAG39846.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244096|emb|CAG42522.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57284309|gb|AAW36403.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus COL] gi|82656020|emb|CAI80425.1| tmRNA and SsrA-binding protein [Staphylococcus aureus RF122] gi|87128160|gb|ABD22674.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202122|gb|ABD29932.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150373762|dbj|BAF67022.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus str. Newman] gi|160367861|gb|ABX28832.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729243|gb|EES97972.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH130] gi|257272472|gb|EEV04595.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275763|gb|EEV07236.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257279398|gb|EEV09999.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282317|gb|EEV12452.1| tmRNA-binding protein [Staphylococcus aureus subsp. aureus E1410] gi|257284997|gb|EEV15116.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M876] gi|257846492|gb|EEV70515.1| SsrA-binding protein [Staphylococcus aureus A9635] gi|257860386|gb|EEV83218.1| tmRNA-binding protein [Staphylococcus aureus A5948] gi|259159404|gb|EEW44457.1| SsrA-binding protein [Staphylococcus aureus 930918-3] gi|259161843|gb|EEW46428.1| SsrA-binding protein [Staphylococcus aureus D30] gi|269940358|emb|CBI48735.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TW20] gi|282314410|gb|EFB44800.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C101] gi|282317710|gb|EFB48082.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C427] gi|282320073|gb|EFB50420.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus D139] gi|282322657|gb|EFB52979.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M899] gi|282325821|gb|EFB56129.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus WBG10049] gi|282327837|gb|EFB58119.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331599|gb|EFB61111.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282593738|gb|EFB98730.1| SsrA-binding protein [Staphylococcus aureus A9765] gi|282596368|gb|EFC01329.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus C160] gi|283460092|gb|EFC07182.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus H19] gi|283470076|emb|CAQ49287.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ST398] gi|283791066|gb|EFC29881.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290921165|gb|EFD98226.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M1015] gi|291095672|gb|EFE25933.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 58-424] gi|291467713|gb|EFF10228.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus M809] gi|294822648|gb|EFG39088.1| SsrA-binding protein [Staphylococcus aureus A9754] gi|295128749|gb|EFG58380.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886745|gb|EFH25649.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297576582|gb|EFH95297.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MN8] gi|298694117|gb|ADI97339.1| tmRNA and SsrA-binding protein [Staphylococcus aureus subsp. aureus ED133] gi|300886828|gb|EFK82030.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH70] gi|302332492|gb|ADL22685.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302750678|gb|ADL64855.1| putative tmRNA-binding protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339958|gb|EFM05902.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312438788|gb|ADQ77859.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus TCH60] gi|315194402|gb|EFU24794.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus CGS00] gi|315196260|gb|EFU26614.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus CGS01] gi|320139882|gb|EFW31743.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142027|gb|EFW33855.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323438638|gb|EGA96382.1| SsrA-binding protein [Staphylococcus aureus O11] gi|323441963|gb|EGA99600.1| SsrA-binding protein [Staphylococcus aureus O46] gi|329313502|gb|AEB87915.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus T0131] gi|329723804|gb|EGG60332.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 21189] Length = 154 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +N E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N +I Y + NRFNH P R+RKLLL KREI +L R G ++VP+K+Y G Sbjct: 59 MYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLK-HGH 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKAR 153 >gi|254448777|ref|ZP_05062234.1| SsrA-binding protein [gamma proteobacterium HTCC5015] gi|198261618|gb|EDY85906.1| SsrA-binding protein [gamma proteobacterium HTCC5015] Length = 145 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY-L 74 N+KAR++Y I ++ EAG+VL G EVKSLR K + DS+ + E +L ++I Sbjct: 2 QNKKARHDYSIEQNIEAGLVLEGWEVKSLRAGKAQLVDSHVIIKQGEAYLIGAHITPLPT 61 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + N P R RKLLL RE+ L +V R G TLV + +Y+ KG K+DL LA+GKK Sbjct: 62 ASTHVNTDPTRIRKLLLHNRELAHLIGSVDRKGYTLVALAMYWK-KGKIKLDLGLAKGKK 120 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR ++K+RDW R+K R+L+ + Sbjct: 121 LHDKRASDKQRDWQREKARLLKNN 144 >gi|171780154|ref|ZP_02921058.1| hypothetical protein STRINF_01942 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281502|gb|EDT46937.1| hypothetical protein STRINF_01942 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 155 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 72/148 (48%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y+IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYNIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI +L ++ GMTL+P+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQEPERTRKLLLKKREIEKLSNDLKGTGMTLIPLKVYLK-NGFAKVLLGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRET K+R+ DR R ++ N Sbjct: 126 GKHDYDKRETIKRREQDRDIKRQMKNFN 153 >gi|119961982|ref|YP_948369.1| SsrA-binding protein [Arthrobacter aurescens TC1] gi|166222355|sp|A1R807|SSRP_ARTAT RecName: Full=SsrA-binding protein gi|119948841|gb|ABM07752.1| SsrA-binding protein [Arthrobacter aurescens TC1] Length = 156 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 67/144 (46%), Positives = 101/144 (70%), Gaps = 1/144 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KVV+ NRKAR+NYH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+ Sbjct: 3 KESGRKVVATNRKARHNYHVMDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWME 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +IPEY Q + NH RR RKLLL + E+ ++ +R G T+VP+++YF G AK++ Sbjct: 63 GIHIPEYHQGSWTNHAARRRRKLLLHRDELDKISQKIRESGFTVVPLQLYFLD-GRAKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQ 150 +A+A+GKK+YDKR+T +++ R+ Sbjct: 122 IAIARGKKDYDKRQTLREQQDKRE 145 >gi|238019173|ref|ZP_04599599.1| hypothetical protein VEIDISOL_01036 [Veillonella dispar ATCC 17748] gi|294791940|ref|ZP_06757088.1| SsrA-binding protein [Veillonella sp. 6_1_27] gi|237863872|gb|EEP65162.1| hypothetical protein VEIDISOL_01036 [Veillonella dispar ATCC 17748] gi|294457170|gb|EFG25532.1| SsrA-binding protein [Veillonella sp. 6_1_27] Length = 156 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ +S + +++DNRKAR++++I ++EAGI LTGTE+KS+R K+N+ DS+ + Sbjct: 1 MAKQSSPS----LIADNRKARHDFNIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+ Sbjct: 57 GELLLYGVHISPYEQGNRFNHEPERTRKLLMHKSEINKLHAQVKEKGFSLVPLNFHFS-H 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ + L GKK YDKR+ +RD R + L+E Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRLKE 152 >gi|330447341|ref|ZP_08310990.1| ssrA-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491532|dbj|GAA05487.1| ssrA-binding protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 160 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 91/160 (56%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N+ AR+ + I +EAG+ L G EVK++R KVN+++SY N Sbjct: 1 MAKKPNKKPGSNTIAKNKTARFEFAINDEYEAGMQLQGWEVKAIRDGKVNMTESYVFLRN 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +++ I + P R RKLLL++REI +L AV RDG T++ + +Y+ A Sbjct: 61 GEAFISGLTITPLNAASTHVVADPTRTRKLLLNRREIDKLAGAVNRDGETIIALNMYWKA 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 KI + A+GKK +DKR K +DW R K RIL+ N Sbjct: 121 S-FVKIKIGTARGKKLHDKRADSKAKDWQRDKARILKSSN 159 >gi|222150779|ref|YP_002559932.1| ssrA-binding protein [Macrococcus caseolyticus JCSC5402] gi|254778366|sp|B9EAH5|SSRP_MACCJ RecName: Full=SsrA-binding protein gi|222119901|dbj|BAH17236.1| ssrA-binding protein [Macrococcus caseolyticus JCSC5402] Length = 153 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ NRKA ++Y I + EAGI L GTE+KS+R N+ DSYA E+++ N +I Sbjct: 7 KVLAQNRKASHDYIIEETIEAGIELKGTEIKSIRRGSANLRDSYARVYKGEVFVYNMHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + NRFNH P R RKLLL +++I +L+ R G TLVP+K+Y G K+ + +A+ Sbjct: 67 PYEEGNRFNHDPLRTRKLLLKRKQIDKLFGQTREQGYTLVPLKLYIK-NGYCKMLIGVAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK+YDKR K ++ R+ R ++E Sbjct: 126 GKKDYDKRHALKAKEAKREMDRAMKER 152 >gi|325270985|ref|ZP_08137572.1| SsrA-binding protein [Prevotella multiformis DSM 16608] gi|324986782|gb|EGC18778.1| SsrA-binding protein [Prevotella multiformis DSM 16608] Length = 159 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 94/159 (59%), Gaps = 3/159 (1%) Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 + +K V N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+ T Sbjct: 1 MNKEQQERRKKSPVQIRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCTIS 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH RR RKLLL++REI L A + G T++P I+ + Sbjct: 61 RGEMWVQGMNISPYFYGSYANHEARRPRKLLLTRREIRNLEAESKTPGYTIIPTLIFIDE 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK YDKR+T K+++ R+ R + + Sbjct: 121 HGRAKVDIALAKGKKEYDKRQTLKEKEDRREMDRARKHY 159 >gi|163814015|ref|ZP_02205408.1| hypothetical protein COPEUT_00168 [Coprococcus eutactus ATCC 27759] gi|158450709|gb|EDP27704.1| hypothetical protein COPEUT_00168 [Coprococcus eutactus ATCC 27759] Length = 156 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 ++++N+KA + Y I FEAGI L GTEVKS+R +I +++ ++ E+++ Sbjct: 2 SKERGNTLIANNKKAYHEYFIEEKFEAGIELVGTEVKSIRQGHCSIKEAFVGIDHGEVYV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + Y + N FN P R RKLLL + EI++L + G T++P+K+Y GL K+ Sbjct: 62 YRMNVNPYERGNIFNKDPLRTRKLLLHRYEINKLIGQQKVKGYTIMPLKVYIKD-GLVKM 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ LA+GKK YDKRE K+D R+ R L+ N Sbjct: 121 EIGLAKGKKLYDKREDIAKKDMKREMERDLKNRN 154 >gi|313904162|ref|ZP_07837541.1| SsrA-binding protein [Eubacterium cellulosolvens 6] gi|313470964|gb|EFR66287.1| SsrA-binding protein [Eubacterium cellulosolvens 6] Length = 156 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KVV++N+KA ++Y I +E GI L GTEVKS+R+ K +I +S+ ++ EI++ Sbjct: 3 KERGVKVVANNKKAYHDYFIDEKYECGIELHGTEVKSIRMGKCSIKESFVRIQDGEIYIY 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R +KLL+ K+EI L + + G TLVP+++YF K+ Sbjct: 63 GMHISPYEKGNIFNRDPLRPKKLLMHKKEIRTLAGKIAQKGFTLVPVEVYFKDS-RIKVQ 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR +K+D R+ R + N Sbjct: 122 IGLARGKKLYDKRADIQKKDIRREAERNFKVKN 154 >gi|189346071|ref|YP_001942600.1| SsrA-binding protein [Chlorobium limicola DSM 245] gi|189340218|gb|ACD89621.1| SsrA-binding protein [Chlorobium limicola DSM 245] Length = 157 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + NRKAR+ +HI+ S AGI L G+EVKS+R+ K ++++S+A + Sbjct: 1 MAKKQEKPQYIRSI-QNRKARFEFHILDSVVAGIELLGSEVKSVRLGKASLNESFAIIHH 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N I Y +R+R+LLL + EI +L +R G+TL+P+K +F + Sbjct: 60 GEVWLENMQITPYEHNTLDKLEAKRSRRLLLHRDEIRKLQTKIREKGLTLIPLKAFFTDR 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ KI++ALA+GKK YDKRET K RD +RQ +I + + Sbjct: 120 GILKIEIALAKGKKLYDKRETIKARDTERQMQQIKKSY 157 >gi|320527586|ref|ZP_08028764.1| SsrA-binding protein [Solobacterium moorei F0204] gi|320132032|gb|EFW24584.1| SsrA-binding protein [Solobacterium moorei F0204] Length = 153 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 92/149 (61%), Gaps = 1/149 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +K V+ NR+A ++Y + FE GIVLTGTE+KS+R K+ DSY + E W+ Sbjct: 4 KTHEKTVALNRRASHDYFLEEKFECGIVLTGTEIKSVRQGKIQFQDSYISIYRGEAWIKG 63 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y N FN R+RKLLL K EI RL+ V+ G TL+P+++Y G AK+++ Sbjct: 64 MHISPYKYGNIFNVDETRDRKLLLHKLEIFRLHQKVKLKGYTLIPVRMYLKD-GRAKLEI 122 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILR 156 ALA+GK YDKRETEK RD R + L+ Sbjct: 123 ALAKGKDLYDKRETEKLRDAKRAMEKALK 151 >gi|149190065|ref|ZP_01868342.1| SsrA-binding protein [Vibrio shilonii AK1] gi|148836095|gb|EDL53055.1| SsrA-binding protein [Vibrio shilonii AK1] Length = 161 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 3/160 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M K S+ ++ N+K R+ YHI E+GI L G EVKSLR K NI++SY Sbjct: 1 MVKKNSKKKAGSNTIAQNKKVRHEYHIEDEIESGIELQGWEVKSLRQGKANIAESYVYIR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + + +++ I Q + P R RKLL+ +RE+ +L V RDGMTLV +Y++ Sbjct: 61 DGQAYISGMSIIPLNQASTHIVAEPTRVRKLLMHRRELDKLIGLVNRDGMTLVATALYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + AK+ + +A+GKK +DKR K++DW R K RI++ + Sbjct: 121 -RSWAKLKVGVAKGKKLHDKRADLKEKDWARDKARIMKSN 159 >gi|323142185|ref|ZP_08077020.1| SsrA-binding protein [Phascolarctobacterium sp. YIT 12067] gi|322413336|gb|EFY04220.1| SsrA-binding protein [Phascolarctobacterium sp. YIT 12067] Length = 155 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 2/149 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNSYI 70 K++++NRKAR+++ I +FEAGI LTGTEVKSLR K N+ DSYA E+++ N +I Sbjct: 7 KIIAENRKARHDFTIYETFEAGIALTGTEVKSLRAGKANMKDSYAQVTRQAEVFVYNLHI 66 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N FNH P R+R+LLL + EI++L V+ G LVP+K+YF GL K++LALA Sbjct: 67 SPYDHGNIFNHDPLRSRRLLLHRAEINKLIGKVKEKGYALVPLKLYFK-HGLVKMELALA 125 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKR+ KRD R+ R L++ N Sbjct: 126 VGKKLYDKRQDMAKRDAKREMERALKDRN 154 >gi|293376199|ref|ZP_06622444.1| SsrA-binding protein [Turicibacter sanguinis PC909] gi|292645186|gb|EFF63251.1| SsrA-binding protein [Turicibacter sanguinis PC909] Length = 155 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 67/146 (45%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA ++Y I +FEAGIVL GTE+KS+R KVN+ DS+ + +E ++ N +I Sbjct: 8 TLAQNKKAGHDYFIEETFEAGIVLQGTEIKSIRAGKVNLRDSFVRIDRNEAFVHNMHISH 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y Q NRFNH P R RKLLL KREI +L + G +L+P+K+Y G AK+ +A+G Sbjct: 68 YEQGNRFNHDPLRTRKLLLHKREIAKLIGTQKMGGYSLIPLKLYIKD-GYAKLLFGIAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KKNYDKR+ K +D +RQ + L++ Sbjct: 127 KKNYDKRQDLKAKDANRQIEKALKDR 152 >gi|270158190|ref|ZP_06186847.1| SsrA-binding protein [Legionella longbeachae D-4968] gi|289163552|ref|YP_003453690.1| trans-translation protein [Legionella longbeachae NSW150] gi|269990215|gb|EEZ96469.1| SsrA-binding protein [Legionella longbeachae D-4968] gi|288856725|emb|CBJ10536.1| trans-translation protein [Legionella longbeachae NSW150] Length = 158 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + + NRKA ++Y I +EAG+VL G EVKSLR K+N+SDS+ +N Sbjct: 1 MTNKKQSDS---TIVFNRKASFDYFIEEQYEAGLVLEGWEVKSLRAGKINLSDSHVIIKN 57 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+++E+++L +V R G T+VP+ +Y+ Sbjct: 58 SEAFLLGAQIQPLITASTHTIPDPIRTRKLLLNRKELNQLIGSVERQGYTIVPLSLYWKK 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + ALA+GKK +DKR+T K R+W R + RI+++ Sbjct: 118 NKIKIKI-ALAKGKKEHDKRDTIKDREWQRDRSRIMKK 154 >gi|220932408|ref|YP_002509316.1| SsrA-binding protein [Halothermothrix orenii H 168] gi|254778364|sp|B8CYF2|SSRP_HALOH RecName: Full=SsrA-binding protein gi|219993718|gb|ACL70321.1| SsrA-binding protein [Halothermothrix orenii H 168] Length = 155 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 71/152 (46%), Positives = 102/152 (67%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G KV++ N+KAR+++ I ++E+GI+L GTE+KS+R +VN+ DS+A EN E++L Sbjct: 2 GQDNIKVIARNKKARHDFFIEETYESGIILRGTEIKSVREGRVNLKDSFALVENGEVFLY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y Q NR+NH P R RKLLL K EI +L ++ G +LVP+ IY LAKI+ Sbjct: 62 NMHISPYKQGNRYNHDPGRKRKLLLHKSEIRKLIGKTKQRGYSLVPLSIYLK-NNLAKIE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LALA+GKK YDKR+ K+ +R+ R +E Sbjct: 121 LALAKGKKKYDKRQEIAKKTAEREIRRAFKER 152 >gi|87120239|ref|ZP_01076134.1| SmpB protein [Marinomonas sp. MED121] gi|86164342|gb|EAQ65612.1| SmpB protein [Marinomonas sp. MED121] Length = 160 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS + + ++ N++AR++Y I + FEAGI LTG EVKSLR K + DS+ N Sbjct: 1 MSKAKKKSNTSGTIALNKRARHDYFIEQKFEAGICLTGWEVKSLRAGKAQLVDSHVFLRN 60 Query: 61 DEIWLTN-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL N P + P R+RKLLL+K+EI +L + G V +Y+ Sbjct: 61 GEAWLLNTLITPLMTASTHVVCEPTRDRKLLLNKKEIDKLIQVTEQKGKACVATALYWKG 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALA GKK+ DKR+T + RDW R K R+++ Sbjct: 121 NH-IKVEIALATGKKDIDKRDTTRDRDWARDKERMMKH 157 >gi|116492267|ref|YP_804002.1| SsrA-binding protein [Pediococcus pentosaceus ATCC 25745] gi|122266269|sp|Q03GW2|SSRP_PEDPA RecName: Full=SsrA-binding protein gi|116102417|gb|ABJ67560.1| SsrA-binding protein [Pediococcus pentosaceus ATCC 25745] Length = 155 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 70/156 (44%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + K ++ N+KAR++Y I+ + EAG+VLTGTE+KS+R +V + D Y + E Sbjct: 1 MAKKPKSNDKALAQNKKARHDYSILSTMEAGMVLTGTEIKSIRDRRVTLRDGYVQIRHGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 L N I EYLQ N+FNH P RNRKLLL K+EI +L + G+T+VP+K+Y G Sbjct: 61 AILMNVQINEYLQGNQFNHDPFRNRKLLLHKKEILKLQEETKNKGITIVPLKMYLK-NGF 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + +A+GK YDKRE+ KKRD R+ R L+ Sbjct: 120 AKVLIGVAKGKHEYDKRESLKKRDQQREIDRALKNR 155 >gi|326803683|ref|YP_004321501.1| SsrA-binding protein [Aerococcus urinae ACS-120-V-Col10a] gi|326651101|gb|AEA01284.1| SsrA-binding protein [Aerococcus urinae ACS-120-V-Col10a] Length = 154 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + N VV+ NRKA ++Y I + EAG+VLTGTE+KS+R KVN+ DS+A EN Sbjct: 1 MTKKKQDN----VVATNRKANHDYIIEDTIEAGLVLTGTEIKSIRKGKVNLKDSFARVEN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 ++W+ ++ + Q NRFN P R RKLLL KREI+RL V ++G ++P+++Y + Sbjct: 57 GQVWVYGMHVSPFEQGNRFNPDPMRPRKLLLKKREINRLAKHVSQEGYAIIPLRMYIK-R 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + + +GKK YDKR+ K++D R R ++E Sbjct: 116 GFAKLLIGIGKGKKKYDKRQALKEKDMKRDIKRAMKEK 153 >gi|325838921|ref|ZP_08166727.1| SsrA-binding protein [Turicibacter sp. HGF1] gi|325490662|gb|EGC92973.1| SsrA-binding protein [Turicibacter sp. HGF1] Length = 154 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 67/146 (45%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA ++Y I +FEAGIVL GTE+KS+R KVN+ DS+ + +E ++ N +I Sbjct: 8 TLAQNKKAGHDYFIEETFEAGIVLQGTEIKSIRAGKVNLRDSFVRIDRNEAFVHNMHISH 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y Q NRFNH P R RKLLL KREI +L + G +L+P+K+Y G AK+ +A+G Sbjct: 68 YEQGNRFNHDPLRTRKLLLHKREIAKLIGTQKMGGYSLIPLKLYIKD-GYAKLLFGIAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KKNYDKR+ K +D +RQ + L++ Sbjct: 127 KKNYDKRQDLKAKDANRQIEKALKDR 152 >gi|157827270|ref|YP_001496334.1| SsrA-binding protein [Rickettsia bellii OSU 85-389] gi|187629782|sp|A8GWS0|SSRP_RICB8 RecName: Full=SsrA-binding protein gi|157802574|gb|ABV79297.1| SsrA-binding protein [Rickettsia bellii OSU 85-389] Length = 151 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 104/148 (70%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A +E++L N +I Sbjct: 4 KKIIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGNEVFLYNCHI 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL K+EI+++ + G TLV + +YFN K KI+L +A Sbjct: 64 AEYEKANRFNHSTRRPRKLLLHKKEINKIIGRTKIKGYTLVALSMYFNKKNKIKIELGIA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 124 KGKKLHDKRESIKEKDWKRDQSRLIRQK 151 >gi|303233078|ref|ZP_07319753.1| SsrA-binding protein [Atopobium vaginae PB189-T1-4] gi|302480853|gb|EFL43938.1| SsrA-binding protein [Atopobium vaginae PB189-T1-4] Length = 174 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 58/154 (37%), Positives = 88/154 (57%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S ++++ NR AR+ Y I ++EAGI L G EVKSLR I+D++ E++ Sbjct: 17 SNRASAARLIAQNRTARHEYDIDTTWEAGIELVGCEVKSLRERACQITDTFCIVRKRELF 76 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L +IP Y +N R RKLL+ +++I + ++ G+ LVP+KIYF+ K Sbjct: 77 LVGLHIPPYSHGGVWNIDADRRRKLLMHRKQITTIERKLQVKGIALVPLKIYFDEHSRVK 136 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + + L +GKK YDKR + KRD DR+ R L+E Sbjct: 137 VQVGLGRGKKLYDKRASAAKRDSDREIARALKER 170 >gi|269218741|ref|ZP_06162595.1| SsrA-binding protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269211852|gb|EEZ78192.1| SsrA-binding protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 217 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 65/159 (40%), Positives = 100/159 (62%), Gaps = 13/159 (8%) Query: 2 SLKSRGNPPKK-----------VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVN 50 + K G P V++ N+KAR+ Y I+ ++EAG+ LTGTEVK+LR+ + + Sbjct: 44 AKKKDGKPTAAQKAKAQADAKQVIARNKKARHEYSILDTYEAGMSLTGTEVKALRLGRAS 103 Query: 51 ISDSYATFEND-EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMT 109 + D++ + E WL + IP Y NH P R RKLLL K+EI +L V+ G+T Sbjct: 104 LVDAWVEIDRYGEAWLHGANIPVYAMGTWTNHAPTRKRKLLLHKQEIGKLMQKVQSKGLT 163 Query: 110 LVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWD 148 +VP+++YF +G AK+++ALA+GK+ +DKRET ++RD D Sbjct: 164 IVPLELYF-LRGRAKVEIALAEGKQEWDKRETIRRRDAD 201 >gi|229817220|ref|ZP_04447502.1| hypothetical protein BIFANG_02480 [Bifidobacterium angulatum DSM 20098] gi|229785009|gb|EEP21123.1| hypothetical protein BIFANG_02480 [Bifidobacterium angulatum DSM 20098] Length = 159 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 98/160 (61%), Gaps = 6/160 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFE 59 M+ K+++ N+KAR++Y I +EAG+VLTGTEVKSLR + ++++++ Sbjct: 1 MAK----EQGTKLIAQNKKARHDYAIEDKYEAGLVLTGTEVKSLREGRASLAEAFVSIDR 56 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+WL N+ IPEYL NH P+R RKLLL +REI +L G T++P+ +YF Sbjct: 57 RGEMWLENANIPEYLNGTWNNHAPKRKRKLLLHEREIIKLSRQSEAKGYTIIPLSLYFKD 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G K ++ALA+GK+ +DKR+ ++ R+ R +R N Sbjct: 117 -GRVKAEIALARGKREFDKRQALREEQDKREALRAMRYAN 155 >gi|225024233|ref|ZP_03713425.1| hypothetical protein EIKCOROL_01105 [Eikenella corrodens ATCC 23834] gi|224943258|gb|EEG24467.1| hypothetical protein EIKCOROL_01105 [Eikenella corrodens ATCC 23834] Length = 147 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA ++Y I EAG+VL G EVK++R +V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDYFIEDQLEAGLVLDGWEVKAVRAGRVQLKESYIHWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI++L V R G TLVP+ +++ +G K+D+ LA+G Sbjct: 63 PTASTHVKPDPVRQRKLLLKQSEINKLIGKVERSGYTLVPLNLHYR-RGYIKMDIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR++ K+ DW R+K R+L+ Sbjct: 122 KKQHDKRQSMKEADWKREKQRLLKNR 147 >gi|239996745|ref|ZP_04717269.1| SsrA-binding protein [Alteromonas macleodii ATCC 27126] Length = 159 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 91/158 (57%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M ++ N+KAR++Y + FEAG+ L G E+KS+R KVNI+D+Y +N Sbjct: 1 MKKNKANKNTTGNIAQNKKARHDYFLEDKFEAGLELQGWEIKSIRAGKVNITDAYIIIQN 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L I Q + P R RKLLL+KREI RL A R G ++V +Y+ Sbjct: 61 AEAYLVGCRISPLNQASTHVIAAPERARKLLLNKREIDRLMGARDRQGYSIVATSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K K+++ LA+GK +DKR+T K +DW RQK R+++ Sbjct: 120 KCWVKLEIHLAKGKHAHDKRDTIKDKDWQRQKERMMKH 157 >gi|145589607|ref|YP_001156204.1| SsrA-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189046836|sp|A4SYS6|SSRP_POLSQ RecName: Full=SsrA-binding protein gi|145048013|gb|ABP34640.1| SsrA-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 150 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72 + DN+KA ++Y I FEAG+VL G EVK++R +V++ ++Y E++L +I P Sbjct: 3 IVDNKKAFFDYFIEERFEAGLVLEGWEVKAIRAGRVHVKEAYVVIRKAELFLIGCHITPL 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL+ EI +L V + G TLVP+ ++F KG K ++ LA+G Sbjct: 63 LSASTHIVPDSTRTRKLLLNAIEIRKLIGKVEQKGYTLVPLNLHFT-KGNVKCEIGLARG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKR K+R+W+ QK RI R Sbjct: 122 KKQHDKRAATKEREWEVQKGRIAR 145 >gi|90022386|ref|YP_528213.1| SsrA-binding protein [Saccharophagus degradans 2-40] gi|89951986|gb|ABD82001.1| SsrA-binding protein [Saccharophagus degradans 2-40] Length = 162 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 3/157 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS + P ++ N++AR++Y + FEAG+ L G EVK+LR + +++SY + Sbjct: 4 MSKANKKKKPQSSTIAQNKRARHDYFLETKFEAGVALLGWEVKALRAQRGQMTESYVLVQ 63 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E WL + I Q + P R RKLLL++RE++++ A + G T+V +Y+ Sbjct: 64 NGEAWLQGAQIQPLPQACTHYVTEPARPRKLLLNRRELNKIAEAKDQKGYTIVATSLYWK 123 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 A + K ++A+A+GK+ +DKR+TEK+R+W+ QK R+L Sbjct: 124 AH-MVKCEIAIAKGKQLHDKRQTEKEREWNIQKQRVL 159 >gi|91205554|ref|YP_537909.1| SsrA-binding protein [Rickettsia bellii RML369-C] gi|122425608|sp|Q1RIJ4|SSRP_RICBR RecName: Full=SsrA-binding protein gi|91069098|gb|ABE04820.1| tmRNA-binding protein [Rickettsia bellii RML369-C] Length = 152 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 104/148 (70%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A +E++L N +I Sbjct: 5 KKIIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGNEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL K+EI+++ + G TLV + +YFN K KI+L +A Sbjct: 65 AEYEKANRFNHSTRRPRKLLLHKKEINKIIGRTKIKGYTLVALSMYFNKKNKIKIELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|121604906|ref|YP_982235.1| SsrA-binding protein [Polaromonas naphthalenivorans CJ2] gi|120593875|gb|ABM37314.1| SsrA-binding protein [Polaromonas naphthalenivorans CJ2] Length = 185 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY-L 74 DN+KA +NYHI FEAG+VL G EVKS+R KV ++D Y N E+++ I Sbjct: 41 DNKKATFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRNGELFIIGCQINPLGT 100 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + R +KLL+ K EI RL + + G TLVP+ +++ A G K ++ LA+GK Sbjct: 101 ASTHIRPDSVRTKKLLMHKDEIRRLIGKIDQKGFTLVPLNMHWKA-GKVKCEIGLAKGKA 159 Query: 135 NYDKRETEKKRDWDRQKHRILREHN 159 +DKR+T K R+ R+ R ++ N Sbjct: 160 EHDKRDTIKDREGKREVDRAMKSRN 184 >gi|322387714|ref|ZP_08061323.1| SsrA-binding protein [Streptococcus infantis ATCC 700779] gi|322391818|ref|ZP_08065283.1| SsrA-binding protein [Streptococcus peroris ATCC 700780] gi|321141581|gb|EFX37077.1| SsrA-binding protein [Streptococcus infantis ATCC 700779] gi|321145298|gb|EFX40694.1| SsrA-binding protein [Streptococcus peroris ATCC 700780] Length = 155 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R+++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIARVMKAVN 153 >gi|258543893|ref|ZP_05704127.1| SsrA-binding protein [Cardiobacterium hominis ATCC 15826] gi|258520832|gb|EEV89691.1| SsrA-binding protein [Cardiobacterium hominis ATCC 15826] Length = 156 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS KS+ + NRKA ++Y + FEAGI L G EVK+LR ++ I +S+ ++ Sbjct: 1 MSKKSKEQDNN--IITNRKAFHDYFLEEHFEAGIALEGWEVKALRAGRIQIKESHILVKS 58 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L +YI + P R RKLLL + EI +L A RDG TLVP+ +Y+ Sbjct: 59 GEVFLFGAYITPLPSASTHVIADPSRTRKLLLHRNEISKLIGAAERDGYTLVPVNLYWK- 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LA+A+GKK +DKR +EK RDW RQK R+++ H Sbjct: 118 NGYVKVNLAIAKGKKAFDKRASEKDRDWARQKERLMKIH 156 >gi|332184251|gb|AEE26505.1| tmRNA-binding protein SmpB [Francisella cf. novicida 3523] Length = 157 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 2/154 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+ ++ N+KA ++Y I+ FEAGIVL G EVKS+R KV + DS+ + E W Sbjct: 2 SKHKVSPATIAKNKKALHDYTILEKFEAGIVLQGWEVKSIRAGKVQMVDSHVHIKYGEAW 61 Query: 65 LTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N P + RKLLL++REI ++ + + G T VP+ +Y+ Sbjct: 62 LFNCLITPLLSASTHVVADAAATRKLLLNRREIDKIMGRIEQKGFTCVPLAMYWKGP-RV 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI++ALAQGKK +DKR+ +K +DW R+K R+ ++ Sbjct: 121 KIEIALAQGKKVHDKRQAQKDKDWAREKDRLFKK 154 >gi|217076594|ref|YP_002334310.1| SsrA-binding protein [Thermosipho africanus TCF52B] gi|226734260|sp|B7IFV5|SSRP_THEAB RecName: Full=SsrA-binding protein gi|217036447|gb|ACJ74969.1| SsrA-binding protein [Thermosipho africanus TCF52B] Length = 149 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 72/147 (48%), Positives = 105/147 (71%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA +Y+I+ ++EAGI L GTEVK+LR S N DS+ +N E++L N IP Sbjct: 2 KVIATNKKAYSDYNILETYEAGIELRGTEVKALRESGANFKDSFCRIKNGEVFLLNLNIP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y N NH P R R+LLL K+EIHRL V+ G+T++P KIYFN++GL K+++A+A+ Sbjct: 62 QYRNGNLNNHDPERPRRLLLHKKEIHRLIGKVKEQGLTIIPTKIYFNSRGLVKVEIAVAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE KKR+ +R+ + L+ + Sbjct: 122 GKKKYDKREDIKKREINRKINEYLKRN 148 >gi|51473618|ref|YP_067375.1| SsrA-binding protein [Rickettsia typhi str. Wilmington] gi|30173367|sp|Q9AKE3|SSRP_RICTY RecName: Full=SsrA-binding protein gi|13235357|emb|CAC33723.1| Small protein [Rickettsia typhi] gi|51459930|gb|AAU03893.1| tmRNA-binding protein SmpB [Rickettsia typhi str. Wilmington] Length = 152 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 101/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +SYA+ E++L N +I Sbjct: 5 KKVIAQNKKAIFNYFIEEILEAGIVLKGSEVQSLRQGKASIDESYASDNGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K++L +A Sbjct: 65 TEYEKANRFNHSTRRPRKLLLHTKEIKKIIGKIRIKGYTLVALSMYFNKNNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR T K++DW + + R++R+ Sbjct: 125 KGKKLYDKRATIKEKDWKKDQSRLIRQK 152 >gi|319943800|ref|ZP_08018081.1| SsrA-binding protein [Lautropia mirabilis ATCC 51599] gi|319743033|gb|EFV95439.1| SsrA-binding protein [Lautropia mirabilis ATCC 51599] Length = 150 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 89/148 (60%), Gaps = 2/148 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++NRKA +NY I EAG+ L G EVK++R +V I ++Y EI+L ++I Sbjct: 3 TITENRKAGFNYFIEERIEAGLALEGWEVKAIRAGRVQIQEAYVIVRRAEIFLIGAHITP 62 Query: 73 Y-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + RNRKLLL EI RL V R G +LVP+ +++ +G K+ L LA+ Sbjct: 63 LITASTHVKPDVTRNRKLLLHAAEIARLIGKVERAGYSLVPLDLHYT-RGRVKLALGLAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK +DKR TE+++DW R++ R+++ N Sbjct: 122 GKKQFDKRATEREKDWQRERSRLMKNGN 149 >gi|332111606|gb|EGJ11588.1| SsrA-binding protein [Rubrivivax benzoatilyticus JA2] Length = 155 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NR+AR+ YHI +EAGIVL+G E+K++R +V ++D Y + E++L I Sbjct: 4 IAENRRARFEYHIEEQYEAGIVLSGWEIKAIRAGQVQLTDGYVLIRDGELFLIGCRINAL 63 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R +KLL+ K EI RL V + G TLVP+ +++ G K ++ALA+G Sbjct: 64 RSASTHVLPEPDRTKKLLMKKDEIRRLVGKVEQKGFTLVPLNLHYKG-GRVKAEIALAKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K +DKR+TEKKRDW+R+K R++R Sbjct: 123 KAQHDKRDTEKKRDWEREKGRLMRHK 148 >gi|326316675|ref|YP_004234347.1| SsrA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373511|gb|ADX45780.1| SsrA-binding protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 157 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 87/159 (54%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++DN+KA +NY EAG+VL G EVK+LR KV ++D Y Sbjct: 1 MAKKPETLSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIRE 57 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L I + + R +KLLL K EI RL V + G TLVP+ +++ Sbjct: 58 GELYLIGCQINPLKTASTHVSPDAVRTKKLLLHKDEIKRLIGKVEQKGYTLVPLNLHWT- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK ++ALA+GK +DKR+T K+R+ R+ R ++ Sbjct: 117 NGRAKCEIALAKGKAEHDKRDTIKEREGKREVERAMKSR 155 >gi|254282406|ref|ZP_04957374.1| SsrA-binding protein [gamma proteobacterium NOR51-B] gi|219678609|gb|EED34958.1| SsrA-binding protein [gamma proteobacterium NOR51-B] Length = 161 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 97/159 (61%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N++AR++YH++ +FEAG+ L G EVK+LR K ++DSY ++ Sbjct: 1 MAKAKKAKKFDNTIAQNKRARFDYHLLDTFEAGVSLAGWEVKALRAGKCQLTDSYVLMKD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL K+++ ++ AAV G T V +Y+ Sbjct: 61 GEAYLLGAQITPLDTISTHYVSDPTRTRKLLLHKKQLAQINAAVSAKGQTCVCTALYWKG 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K +ALAQGKK +DKR+TEK +DW+RQK RI+R + Sbjct: 121 H-LVKAKIALAQGKKQHDKRDTEKAKDWERQKARIVRAN 158 >gi|270292900|ref|ZP_06199111.1| SsrA-binding protein [Streptococcus sp. M143] gi|293365242|ref|ZP_06611959.1| SsrA-binding protein [Streptococcus oralis ATCC 35037] gi|306825392|ref|ZP_07458732.1| SsrA-binding protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|306829350|ref|ZP_07462540.1| SsrA-binding protein [Streptococcus mitis ATCC 6249] gi|307703782|ref|ZP_07640723.1| ssrA-binding protein [Streptococcus oralis ATCC 35037] gi|322374463|ref|ZP_08048977.1| SsrA-binding protein [Streptococcus sp. C300] gi|270278879|gb|EFA24725.1| SsrA-binding protein [Streptococcus sp. M143] gi|291316692|gb|EFE57128.1| SsrA-binding protein [Streptococcus oralis ATCC 35037] gi|304428436|gb|EFM31526.1| SsrA-binding protein [Streptococcus mitis ATCC 6249] gi|304432330|gb|EFM35306.1| SsrA-binding protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307622617|gb|EFO01613.1| ssrA-binding protein [Streptococcus oralis ATCC 35037] gi|321279963|gb|EFX57002.1| SsrA-binding protein [Streptococcus sp. C300] Length = 155 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA ++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKAHHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLHKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|91788301|ref|YP_549253.1| SsrA-binding protein [Polaromonas sp. JS666] gi|122967789|sp|Q12AT7|SSRP_POLSJ RecName: Full=SsrA-binding protein gi|91697526|gb|ABE44355.1| SsrA-binding protein [Polaromonas sp. JS666] Length = 149 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++DN+KA +NYHI FEAG+VL G EVKS+R KV ++D Y E+++ I Sbjct: 3 IADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R +KLL+ K EI RL V + G TLVP+ +++ A G K ++ LA+G Sbjct: 63 GTASTHVRPDSVRTKKLLMHKDEIRRLVGKVEQKGFTLVPLNMHWKA-GKVKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K +DKR+T K R+ R+ R ++ + Sbjct: 122 KGEHDKRDTIKDREGKREVERAMKSRS 148 >gi|225858769|ref|YP_002740279.1| SsrA-binding protein [Streptococcus pneumoniae 70585] gi|254778381|sp|C1C6V3|SSRP_STRP7 RecName: Full=SsrA-binding protein gi|225720476|gb|ACO16330.1| SsrA-binding protein [Streptococcus pneumoniae 70585] Length = 155 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KAR++Y IV + EAG+VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Sbjct: 7 KVVAQNKKARHDYTIVDTLEAGMVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N +N P R RKLLL K++I +L + GMTLVP+K+Y G AK+ L LA+ Sbjct: 67 PYEEGNIWNQEPERRRKLLLYKKQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQNRDIARVMKAVN 153 >gi|114797634|ref|YP_761478.1| SsrA-binding protein [Hyphomonas neptunium ATCC 15444] gi|123322958|sp|Q0BYG5|SSRP_HYPNA RecName: Full=SsrA-binding protein gi|114737808|gb|ABI75933.1| SsrA-binding protein [Hyphomonas neptunium ATCC 15444] Length = 161 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 78/159 (49%), Positives = 108/159 (67%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKV---VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ K + V++NR++R Y + + EAGI+L G+EVKSLR + NI++SYA+ Sbjct: 1 MATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYAS 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 E E+WL N+ I Y ANRFNH PRR RKLL+S+RE+ +L V R G T+VP+K+YF Sbjct: 61 VEQGELWLINAEIQTYGGANRFNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 N KG AK+ + +A G+K +DKRE E KRDW R K RI++ Sbjct: 121 NDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMK 159 >gi|187631659|sp|Q21H28|SSRP_SACD2 RecName: Full=SsrA-binding protein Length = 159 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 3/157 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS + P ++ N++AR++Y + FEAG+ L G EVK+LR + +++SY + Sbjct: 1 MSKANKKKKPQSSTIAQNKRARHDYFLETKFEAGVALLGWEVKALRAQRGQMTESYVLVQ 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N E WL + I Q + P R RKLLL++RE++++ A + G T+V +Y+ Sbjct: 61 NGEAWLQGAQIQPLPQACTHYVTEPARPRKLLLNRRELNKIAEAKDQKGYTIVATSLYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 A + K ++A+A+GK+ +DKR+TEK+R+W+ QK R+L Sbjct: 121 AH-MVKCEIAIAKGKQLHDKRQTEKEREWNIQKQRVL 156 >gi|116512575|ref|YP_811482.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|125624685|ref|YP_001033168.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris MG1363] gi|123125410|sp|Q02XF3|SSRP_LACLS RecName: Full=SsrA-binding protein gi|166223224|sp|A2RME2|SSRP_LACLM RecName: Full=SsrA-binding protein gi|116108229|gb|ABJ73369.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris SK11] gi|124493493|emb|CAL98471.1| SmpB protein [Lactococcus lactis subsp. cremoris MG1363] gi|300071479|gb|ADJ60879.1| SsrA-binding protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 155 Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 N K ++ N+KAR++Y I +FEAGIVLTGTE+KS+R +K+ + D +A N E+WL+ Sbjct: 3 KNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLS 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I + Q N FN R RKLLL+K+EI ++ + G+T +P+K+Y G AK+ Sbjct: 63 NVHIAPFEQGNIFNVEELRTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLK-NGFAKVL 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK+YDKRE+ K+++ +R R L+ +N Sbjct: 122 MGLARGKKDYDKRESLKRKEQNRDIARQLKAYN 154 >gi|225375099|ref|ZP_03752320.1| hypothetical protein ROSEINA2194_00723 [Roseburia inulinivorans DSM 16841] gi|225213046|gb|EEG95400.1| hypothetical protein ROSEINA2194_00723 [Roseburia inulinivorans DSM 16841] Length = 155 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA ++Y + +EAG+ L GTEVKSLR+ K +I +++ E Sbjct: 1 MAKQE-----IKLIANNKKAHHDYFLEEKYEAGVELHGTEVKSLRMGKCSIKEAFVRIEK 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ + +I Y + N FN P R +KLL+ K EI +L + G TLVP+++YF Sbjct: 56 GEVIIYGMHISPYEKGNIFNKDPLRPKKLLMHKSEIRKLVGKIAEQGYTLVPVEVYFKGS 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+ +ALA+GKK YDKR+ K+D R+ R + N Sbjct: 116 -LVKVQIALAKGKKLYDKRQDIAKKDMRREAERDFKIRN 153 >gi|121610821|ref|YP_998628.1| SsrA-binding protein [Verminephrobacter eiseniae EF01-2] gi|166223471|sp|A1WPQ3|SSRP_VEREI RecName: Full=SsrA-binding protein gi|121555461|gb|ABM59610.1| SsrA-binding protein [Verminephrobacter eiseniae EF01-2] Length = 157 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 91/158 (57%), Gaps = 3/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P + ++DN+KA ++Y + +EAG+VL G EVK+LR K ++D Y + E Sbjct: 1 MTKKPDPASR-IADNKKAAHDYFLEERYEAGMVLHGWEVKALRAGKAQLTDGYVLIRDGE 59 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L + + + R +KLLL K +I RL V + G TLVP+ +++ G Sbjct: 60 LFLLGCQLQALKTASTHVSPEAARTKKLLLKKDDIRRLIGKVEQKGYTLVPLNLHWK-NG 118 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + K ++ALA+GK +DKR + K+R+ R+ R L+ + Sbjct: 119 VVKCEIALARGKAQHDKRNSIKEREGKREVERALKSRS 156 >gi|317501945|ref|ZP_07960129.1| SsrA-binding protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331088239|ref|ZP_08337158.1| SsrA-binding protein [Lachnospiraceae bacterium 3_1_46FAA] gi|316896625|gb|EFV18712.1| SsrA-binding protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330408483|gb|EGG87949.1| SsrA-binding protein [Lachnospiraceae bacterium 3_1_46FAA] Length = 154 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 100/152 (65%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 +++++N+KA ++Y I+ +EAGIVL GTEVKSLR+ K +I +++ E+ E+++ Sbjct: 3 KSEVRMIANNKKAYHDYFILEKYEAGIVLHGTEVKSLRMGKCSIKEAFIRVESGEMYIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K+EI +++ ++ G+TLVP+++YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHKKEIDKMFGKMKEQGITLVPLQVYFKGS-LVKMEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +A+GKK YDKR+ K+D R+ R + N Sbjct: 122 GVAKGKKLYDKRDDIAKKDQKREAQREFKIRN 153 >gi|289551357|ref|YP_003472261.1| tmRNA-binding protein SmpB [Staphylococcus lugdunensis HKU09-01] gi|289180888|gb|ADC88133.1| tmRNA-binding protein SmpB [Staphylococcus lugdunensis HKU09-01] Length = 154 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA ++ E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKHGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREVGYSIIPLKLYLK-HGH 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAMKRDVDRAMKAR 153 >gi|254294105|ref|YP_003060128.1| SsrA-binding protein [Hirschia baltica ATCC 49814] gi|254042636|gb|ACT59431.1| SsrA-binding protein [Hirschia baltica ATCC 49814] Length = 158 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + +V++NR++R NY +V + EAGI L GTEVKSLR+ + NIS+SYA E Sbjct: 1 MAKKKKQDGGG-LVAENRQSRRNYEVVDTLEAGIALVGTEVKSLRLGRANISESYARDEQ 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ L N+ IP Y A+RFNH P R RKLLL K+E+ +L + RDGMT+VP+K+YFN + Sbjct: 60 GELVLVNATIPIYPPASRFNHEPLRMRKLLLKKKELAKLMQGITRDGMTIVPLKLYFNER 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+AK+ L LA+G+KN+DKR+ EKKRDWD+QK R++R Sbjct: 120 GIAKLLLGLAKGRKNHDKRDVEKKRDWDKQKARLMRAK 157 >gi|329116966|ref|ZP_08245683.1| SsrA-binding protein [Streptococcus parauberis NCFD 2020] gi|326907371|gb|EGE54285.1| SsrA-binding protein [Streptococcus parauberis NCFD 2020] Length = 155 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 104/148 (70%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N+E+WL N +I Sbjct: 7 NLLAQNKKARHDYHIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKNNEVWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLL+ KREI L ++ GMTL+P+KIY G AK+ + LA+ Sbjct: 67 PFEQGNIWNSDPERTRKLLMKKREIQHLANELKGTGMTLIPLKIYLKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK ++DKRE+ K+R+ DR R+++ N Sbjct: 126 GKHDFDKRESLKRREQDRDIKRVMKSVN 153 >gi|227874899|ref|ZP_03993052.1| tmRNA-binding protein [Mobiluncus mulieris ATCC 35243] gi|269976497|ref|ZP_06183482.1| SsrA-binding protein [Mobiluncus mulieris 28-1] gi|306818195|ref|ZP_07451926.1| SsrA-binding protein [Mobiluncus mulieris ATCC 35239] gi|227844674|gb|EEJ54830.1| tmRNA-binding protein [Mobiluncus mulieris ATCC 35243] gi|269935298|gb|EEZ91847.1| SsrA-binding protein [Mobiluncus mulieris 28-1] gi|304649159|gb|EFM46453.1| SsrA-binding protein [Mobiluncus mulieris ATCC 35239] Length = 180 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 98/144 (68%), Gaps = 1/144 (0%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 N+KA ++Y + EAG+ LTGTEVK+LR+ + ++S+++ + E WL + IPEY Sbjct: 34 RNKKAAHDYFLEDRLEAGLSLTGTEVKALRMGRASLSEAWVEIDRGEAWLQGANIPEYFY 93 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + NH P+R R+LLL KREI RL V G T+VP+++YF G AK+++ALA+GK+ Sbjct: 94 GSWTNHSPKRKRRLLLHKREILRLENGVAAKGYTVVPVELYFIG-GRAKVEIALARGKQE 152 Query: 136 YDKRETEKKRDWDRQKHRILREHN 159 +DKR+T ++R+ +R+ R LR+ N Sbjct: 153 WDKRQTIREREDNREAQRALRDAN 176 >gi|297588328|ref|ZP_06946971.1| SsrA-binding protein [Finegoldia magna ATCC 53516] gi|297573701|gb|EFH92422.1| SsrA-binding protein [Finegoldia magna ATCC 53516] Length = 149 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K++++N+KAR+ Y I +E GI L GTEVKS++ KV+I +SY EN E+++ + Sbjct: 2 SDIKLLANNKKARHEYFIEDVYECGIELKGTEVKSIKKGKVSIKESYCMIENSEVFVYSM 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I Y + N FN R RKLL+ K EI +L + G TL+P+++Y GL K+++A Sbjct: 62 NISPYTEGNIFNVDSLRKRKLLMHKSEIRKLIGKTKEQGYTLIPLRVYEK-NGLVKVEIA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GK YDKRET KKRD R R +R Sbjct: 121 LAKGKNLYDKRETLKKRDDLRNMQRAMRR 149 >gi|196019978|ref|XP_002119080.1| hypothetical protein TRIADDRAFT_63046 [Trichoplax adhaerens] gi|190577046|gb|EDV18434.1| hypothetical protein TRIADDRAFT_63046 [Trichoplax adhaerens] Length = 209 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 71/138 (51%), Positives = 98/138 (71%) Query: 21 RYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFN 80 + Y I EAGIVL G+EVKSLR SK +I++SYA ++EI++ + IPEY +A F Sbjct: 72 YHEYLIEDKVEAGIVLKGSEVKSLRFSKASINESYANNIDNEIFILGANIPEYNKAKSFK 131 Query: 81 HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRE 140 H P+R RKLLL K+EI++L ++R G TL+P+ +YFN K +AKI L LA+GKK +DKRE Sbjct: 132 HNPKRQRKLLLHKKEINKLIGLIKRKGYTLIPLTLYFNKKNIAKISLGLAKGKKKHDKRE 191 Query: 141 TEKKRDWDRQKHRILREH 158 K+RDW+R K RI + + Sbjct: 192 AIKQRDWERDKARIFKNN 209 >gi|239627451|ref|ZP_04670482.1| SsrA-binding protein [Clostridiales bacterium 1_7_47_FAA] gi|239517597|gb|EEQ57463.1| SsrA-binding protein [Clostridiales bacterium 1_7_47FAA] Length = 155 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K+V++N+KA Y+Y I +EAGI L GTEVKS+R+ K ++ +++ + E+++ Sbjct: 2 GKESIKLVANNKKAYYDYFIDEKYEAGIELFGTEVKSIRMGKCSVKEAFVKIDKGEVYVC 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R R+LLL K EI +L + + G TLVP+++YF L K+ Sbjct: 62 GMHISPYEKGNIFNKDPLRTRRLLLHKYEIMKLGGKIAQKGYTLVPLQVYFKGS-LVKVQ 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK YDKR K+D R+ + + N Sbjct: 121 IGLARGKKLYDKRADIAKKDQRRELEKDFKVKN 153 >gi|171058740|ref|YP_001791089.1| SsrA-binding protein [Leptothrix cholodnii SP-6] gi|226734257|sp|B1Y225|SSRP_LEPCP RecName: Full=SsrA-binding protein gi|170776185|gb|ACB34324.1| SsrA-binding protein [Leptothrix cholodnii SP-6] Length = 154 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +NYHI FEAGIVL G E+KS+R ++ ++D Y ++ E++L I Sbjct: 3 IAENKKAFFNYHIEERFEAGIVLAGWEIKSIRSGQIQLTDGYVVIKDGELFLIGLRINAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N P R +KLL+ K EI RL V + G TLVP+ +++ G K+D+ALA+G Sbjct: 63 RSASTHVNPEPDRTKKLLMHKAEIRRLIGKVEQKGHTLVPLNLHYKG-GRVKVDVALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K +DKR T K RDW R++ R++R Sbjct: 122 KAEHDKRHTIKDRDWQREQGRLMRHK 147 >gi|227499725|ref|ZP_03929825.1| tmRNA-binding protein [Anaerococcus tetradius ATCC 35098] gi|227218192|gb|EEI83455.1| tmRNA-binding protein [Anaerococcus tetradius ATCC 35098] Length = 148 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA ++Y I +EAGI L+G+EVKS++ KV+I +S+ N E+++ ++ Sbjct: 3 KLLANNKKAYHDYFIEEKYEAGISLSGSEVKSMKQGKVSIKESFIGDRNGEMFIYGMHVT 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A + P R RKLLL K+EI++L + G T+VP+++Y ++GL KI++ALA+ Sbjct: 63 PYDHAYDKDIDPTRTRKLLLHKKEINKLIGQKTQAGYTIVPLRVY-ESEGLVKIEIALAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKR++ K +D R+ R L+ + Sbjct: 122 GKKQYDKRDSLKAKDDKRKIDRALKNY 148 >gi|225028611|ref|ZP_03717803.1| hypothetical protein EUBHAL_02890 [Eubacterium hallii DSM 3353] gi|224954093|gb|EEG35302.1| hypothetical protein EUBHAL_02890 [Eubacterium hallii DSM 3353] Length = 157 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + K++++N+KA ++Y I +EAGI L GTEVKSLR+ + +I +S+ T N L Sbjct: 3 KSEGIKLIANNKKAYHDYFIDEKYEAGIALHGTEVKSLRMGRCSIKESFVTISNKGEILI 62 Query: 67 N-SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y + N FN P R RKLLL K EI++L ++ G TL+P+K+YF L K+ Sbjct: 63 NHMHISPYEKGNIFNKDPLRVRKLLLHKSEINKLAGQIKMKGYTLMPLKVYFKGS-LVKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ LA+GKK YDKR+ K+D R+ R + N Sbjct: 122 EIGLARGKKLYDKRQDIAKKDAKREAERDFKIRN 155 >gi|296532900|ref|ZP_06895564.1| SsrA-binding protein [Roseomonas cervicalis ATCC 49957] gi|296266772|gb|EFH12733.1| SsrA-binding protein [Roseomonas cervicalis ATCC 49957] Length = 161 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 71/155 (45%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + + NRKAR++Y I ++EAG+VL G EVKSLR + ++D++A + EIW Sbjct: 6 KKSLISHGTAAQNRKARFDYKITDTYEAGLVLLGPEVKSLRAGRAALADAWAGERDGEIW 65 Query: 65 LTNSYIPEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L NSYIPE+ + PRR RKLLL K+++ L AV RDG+TLVP++I FN +G+A Sbjct: 66 LFNSYIPEWQAGSFMAKFEPRRPRKLLLKKKQVETLTGAVARDGVTLVPLEILFNERGIA 125 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L L +GK DKR RDW R K R++RE Sbjct: 126 KVVLGLGEGKNKADKRHAIAARDWQRDKARLMREK 160 >gi|187611503|sp|A5FPK5|SSRP_DEHSB RecName: Full=SsrA-binding protein Length = 172 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I Sbjct: 24 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 83 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G Sbjct: 84 YECSGHTSHEPMRERKLLMHRKEIVLLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 142 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR+T KRD +R+ R ++ N Sbjct: 143 KKLYDKRDTVTKRDTERELEREVKYRN 169 >gi|298529196|ref|ZP_07016599.1| SsrA-binding protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510632|gb|EFI34535.1| SsrA-binding protein [Desulfonatronospira thiodismutans ASO3-1] Length = 155 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 97/154 (62%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 S+G K+++ NRK R+ + I+ + EAG+ LTG+EVKSLR KV+ + Y F+ E + Sbjct: 2 SQGKSGIKIIAVNRKVRHYFEIMETMEAGMALTGSEVKSLRAGKVSFKEGYVRFDRGEAY 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + +I Y A H P R R+LL+ K EI RL V + G+T++P ++YF G AK Sbjct: 62 LVDVHIAPYENAGYAQHDPVRPRRLLMHKSEIKRLMGKVEQKGLTVIPTRMYFKQ-GRAK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +++ALA+G + +D+RET K+R +R R + ++ Sbjct: 121 VEIALARGLRLHDRRETLKRRAVERDTAREMAKY 154 >gi|157964513|ref|YP_001499337.1| SsrA-binding protein [Rickettsia massiliae MTU5] gi|157844289|gb|ABV84790.1| tmRNA-binding protein [Rickettsia massiliae MTU5] Length = 158 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 72/158 (45%), Positives = 106/158 (67%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M++ KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+AT Sbjct: 1 MTIYKNMTEYKKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHATDTG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K Sbjct: 61 HEVFLYNCHIAEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K++L +A+GKK +DKRE+ +++DW R + R++R+ Sbjct: 121 NKVKVELGIAKGKKLHDKRESIQEKDWKRDQSRLIRQK 158 >gi|258648079|ref|ZP_05735548.1| SsrA-binding protein [Prevotella tannerae ATCC 51259] gi|260851941|gb|EEX71810.1| SsrA-binding protein [Prevotella tannerae ATCC 51259] Length = 159 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ P ++ N++A ++Y ++ AGIVLTGTE+KS+R+ K + D++ N Sbjct: 1 MAKNNKLKPA-RINIKNKRAEHDYFVIDRLTAGIVLTGTEIKSIRLGKAGLVDTFCFINN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ N Y+ EY + H RR+RKLLL+K+EI + + G+T+VP+++Y + Sbjct: 60 GEMWVKNMYVAEYSFGSYNRHELRRDRKLLLNKKEIRHWASETKSPGLTIVPLRLYIDEN 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ L +GKK YDKR T K+++ R+ R+ + H Sbjct: 120 GRAKLDIGLCRGKKEYDKRATIKEKESRREIERVTKAH 157 >gi|164686799|ref|ZP_02210827.1| hypothetical protein CLOBAR_00394 [Clostridium bartlettii DSM 16795] gi|164604189|gb|EDQ97654.1| hypothetical protein CLOBAR_00394 [Clostridium bartlettii DSM 16795] Length = 152 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 64/147 (43%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K ++ N+KAR+ Y I ++E GI L GTEVKSLR+ +VN+ D +A+ +N E++L + Sbjct: 3 GTKNLATNKKARHEYFIEETYECGIELKGTEVKSLRMGRVNLKDGFASVDNSEVFLKQVH 62 Query: 70 IPEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I Y Q N F P R RKLLL K EI +L A G +L+P+ +Y G K++LA Sbjct: 63 ISPYEQGNSFYKLDPMRPRKLLLHKSEIRKLIGATTIKGYSLIPLNMYLK-NGKVKVELA 121 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRIL 155 LA+GKK YDKR+ K+D R+ R + Sbjct: 122 LAKGKKLYDKRQDMAKKDAQRRIEREM 148 >gi|289706407|ref|ZP_06502765.1| SsrA-binding protein [Micrococcus luteus SK58] gi|289556902|gb|EFD50235.1| SsrA-binding protein [Micrococcus luteus SK58] Length = 171 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 102/159 (64%), Gaps = 8/159 (5%) Query: 1 MSLKSRGNPPKK-------VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53 M S+G K+ V+++N+KAR++Y I+ ++EAG+VLTGTEVKSLR K ++ D Sbjct: 1 MGKNSKGKATKQPAPGERQVIANNKKARHDYTILDTYEAGMVLTGTEVKSLREGKASLVD 60 Query: 54 SYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPM 113 +A F DE+WL YIPEYL + NH RR RKLLL + E+ ++ ++ G+T+VP+ Sbjct: 61 GFAVFYRDELWLEQVYIPEYLNGSWTNHAARRRRKLLLHRAELTKISRQIQDPGLTIVPL 120 Query: 114 KIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152 +YF G K+++ +A+G + YDKR +++ +R+ Sbjct: 121 SLYF-LNGRVKVEIGVARGNREYDKRHKLREQQDNREAQ 158 >gi|308273410|emb|CBX30012.1| SsrA-binding protein [uncultured Desulfobacterium sp.] Length = 152 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 71/151 (47%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 N K++S+NRKAR++Y I +EAG+VL GTEVKSLR+ + N+ DSYA +N EI++ Sbjct: 3 NTRNKIISENRKARHDYFIEDEYEAGMVLLGTEVKSLRLGRANLKDSYAKIKNGEIFVHQ 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I A NH P R RKLLL+++EI +L + V G +L+P+++YF G KI + Sbjct: 63 MHIGPCPFAYYGNHDPLRIRKLLLNRQEIKKLTSKVNEKGHSLIPLRVYFK-NGKIKISI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ALA+GK+ YDKRE KKRD +R R E Sbjct: 122 ALAKGKRQYDKREAIKKRDENRDMERTRSER 152 >gi|169824350|ref|YP_001691961.1| SsrA-binding protein [Finegoldia magna ATCC 29328] gi|302380509|ref|ZP_07268974.1| SsrA-binding protein [Finegoldia magna ACS-171-V-Col3] gi|303233944|ref|ZP_07320593.1| SsrA-binding protein [Finegoldia magna BVS033A4] gi|167831155|dbj|BAG08071.1| SsrA-binding protein [Finegoldia magna ATCC 29328] gi|302311452|gb|EFK93468.1| SsrA-binding protein [Finegoldia magna ACS-171-V-Col3] gi|302494869|gb|EFL54626.1| SsrA-binding protein [Finegoldia magna BVS033A4] Length = 149 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KAR+ Y I +E GI L GTEVKS++ KV+I +SY EN E+++ + + Sbjct: 5 KLLANNKKARHEYFIEEVYECGIELKGTEVKSIKKGKVSIKESYCMIENSEVFVYSMNVS 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + N FN R RKLL+ K EI +L + G TL+P+++Y GL K+++ALA+ Sbjct: 65 PYTEGNIFNVDSLRKRKLLMHKSEIRKLIGKTKEQGYTLIPLRVYAK-NGLVKVEIALAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GK YDKRET KKRD R R +R Sbjct: 124 GKNLYDKRETLKKRDDLRNMQRAMRR 149 >gi|73749178|ref|YP_308417.1| SsrA-binding protein [Dehalococcoides sp. CBDB1] gi|289433151|ref|YP_003463024.1| SsrA-binding protein [Dehalococcoides sp. GT] gi|123620074|sp|Q3ZZ31|SSRP_DEHSC RecName: Full=SsrA-binding protein gi|73660894|emb|CAI83501.1| SsrA-binding protein [Dehalococcoides sp. CBDB1] gi|288946871|gb|ADC74568.1| SsrA-binding protein [Dehalococcoides sp. GT] Length = 172 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKA +NY + +EAGI+L GTE+KSLR +VN+ D+Y + E+WL N++I Sbjct: 24 TLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLVNAHISA 83 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +H P R RKLL+ ++EI L + V+ G+TL+P++IY +AK++L+L +G Sbjct: 84 YECSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKND-IAKVELSLGRG 142 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR+T KRD +R+ R ++ N Sbjct: 143 KKLYDKRDTVTKRDTERELEREVKYRN 169 >gi|225874511|ref|YP_002755970.1| SsrA-binding protein [Acidobacterium capsulatum ATCC 51196] gi|225793228|gb|ACO33318.1| SsrA-binding protein [Acidobacterium capsulatum ATCC 51196] Length = 176 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 98/158 (62%), Gaps = 5/158 (3%) Query: 2 SLKSRGNP----PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 S K + ++ + NR A +NY ++ +EAG+ L GTEVKS+R K N+ D+Y Sbjct: 14 SAKPKPRDPVAAGERDAAQNRAASHNYFLLEKYEAGVALRGTEVKSIREGKANLKDAYGL 73 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 ++ E +L N++I Y N NH R RKLLL++ E+ +L+ ++ G TL+P ++YF Sbjct: 74 IKDGEAFLLNAHIGPYSHGNYTNHEALRTRKLLLNQTELKKLWGKTQQKGFTLIPTRLYF 133 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 G K +LA+A+GK+++DKRETE+KR+ DR+ + Sbjct: 134 R-NGRVKCELAVAKGKQDWDKRETERKREADREARAAI 170 >gi|332141231|ref|YP_004426969.1| SsrA-binding protein [Alteromonas macleodii str. 'Deep ecotype'] gi|226734242|sp|B4RXY7|SSRP_ALTMD RecName: Full=SsrA-binding protein gi|327551253|gb|AEA97971.1| SsrA-binding protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 159 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M ++ N+KAR++Y + FEAG+ L G E+KS+R KVNI+D+Y +N Sbjct: 1 MKKNKANKNTSGNIAQNKKARHDYFLEDKFEAGLELQGWEIKSIRAGKVNITDAYIIIQN 60 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L I Q + P R RKLLL KREI RL A R G ++V +Y+ Sbjct: 61 AEAYLVGCRISPLNQASTHVVAAPERARKLLLKKREIDRLMGARDRQGYSIVATSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K K+++ LA+GK +DKR+T K +DW RQK R+++ Sbjct: 120 KCWVKLEIHLAKGKHAHDKRDTLKDKDWQRQKERMMKH 157 >gi|224541476|ref|ZP_03682015.1| hypothetical protein CATMIT_00645 [Catenibacterium mitsuokai DSM 15897] gi|224525599|gb|EEF94704.1| hypothetical protein CATMIT_00645 [Catenibacterium mitsuokai DSM 15897] Length = 148 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 69/146 (47%), Positives = 98/146 (67%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++S+N+KA ++Y I+ +FEAGI L GTE+KS+R N+ D + ++ E ++ N YI Sbjct: 2 KIISNNKKAYHDYFILETFEAGIELKGTEIKSIRKGSANLKDCFVRIKDHEAFIENMYIA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N FNH PRR RKLLL K+EI +L VR DG+T+VP K+YFN AK+++ALA+ Sbjct: 62 PYENGNIFNHEPRRIRKLLLHKKEISKLEKKVREDGLTIVPTKLYFNTS-KAKLEIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK YDKR K++D R + L+ Sbjct: 121 GKKLYDKRNDLKEKDAKRDIEKALKR 146 >gi|78186452|ref|YP_374495.1| SsrA-binding protein [Chlorobium luteolum DSM 273] gi|123583351|sp|Q3B5C9|SSRP_PELLD RecName: Full=SsrA-binding protein gi|78166354|gb|ABB23452.1| SsrA-binding protein [Chlorobium luteolum DSM 273] Length = 157 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + + NRKARY Y I+ + AGI L G+EVKS+R+ K ++++S+AT + Sbjct: 1 MAKKQQTRSYTEAI-QNRKARYEYQILETIVAGIELLGSEVKSVRLGKASLNESFATIHH 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 DE+WL N I Y + P+R+RKLLL K EI RL + + G+TL+P+K +F+ Sbjct: 60 DEVWLENMQITPYEFNHLDALEPKRSRKLLLHKEEIRRLQSKINEKGLTLIPLKAFFDKN 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K++LALA+GKK YDKRET K R+ +R ++ +++ Sbjct: 120 GRLKVELALAKGKKLYDKRETIKGRENERHLQQLRKQY 157 >gi|206895626|ref|YP_002246828.1| SsrA-binding protein [Coprothermobacter proteolyticus DSM 5265] gi|226734249|sp|B5Y7T1|SSRP_COPPD RecName: Full=SsrA-binding protein gi|206738243|gb|ACI17321.1| SsrA-binding protein [Coprothermobacter proteolyticus DSM 5265] Length = 150 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ NR+AR++Y I+ ++EAGIVL+G EVKS + V + D++ EN E WL N +I Sbjct: 2 KVLAQNRRARHDYQILETYEAGIVLSGDEVKSAKEGNVQLRDAFVRVENGEAWLYNMHIA 61 Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + F +R RKLLL KREI+++ + + G+T +P+ +Y N +G K+ + +A Sbjct: 62 PYEKTGEPFRGDSKRKRKLLLHKREINKILGYLTQKGLTAIPLSMYVNDRGFIKVSIGVA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK DKR+T K+RD +R+ R + Sbjct: 122 KGKKMVDKRQTIKERDIERELRREGKIR 149 >gi|94988045|ref|YP_596146.1| SsrA-binding protein [Streptococcus pyogenes MGAS9429] gi|94991931|ref|YP_600030.1| SsrA-binding protein [Streptococcus pyogenes MGAS2096] gi|166223460|sp|Q1JD22|SSRP_STRPB RecName: Full=SsrA-binding protein gi|166223461|sp|Q1JMZ7|SSRP_STRPC RecName: Full=SsrA-binding protein gi|94541553|gb|ABF31602.1| ssrA-binding protein [Streptococcus pyogenes MGAS9429] gi|94545439|gb|ABF35486.1| SsrA-binding protein [Streptococcus pyogenes MGAS2096] Length = 155 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 100/147 (68%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTL P+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGSGMTLAPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K YDKRET K+RD +R + ++ +N Sbjct: 127 KHEYDKRETIKRRDQERDIKKQMKHYN 153 >gi|223042959|ref|ZP_03613007.1| SsrA-binding protein [Staphylococcus capitis SK14] gi|222443813|gb|EEE49910.1| SsrA-binding protein [Staphylococcus capitis SK14] Length = 156 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA + Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEDTVEAGIALQGTEIKSIRRGSANLKDSYAQVKR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + NRFNH P R+RKLLL KREI +L R G +L+P+K+Y Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREIGYSLIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKK +DKR+ K + R R ++ Sbjct: 118 GQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKAR 155 >gi|15673704|ref|NP_267878.1| SsrA-binding protein [Lactococcus lactis subsp. lactis Il1403] gi|281492313|ref|YP_003354293.1| SsrA-binding protein [Lactococcus lactis subsp. lactis KF147] gi|13878776|sp|Q9CEW2|SSRP_LACLA RecName: Full=SsrA-binding protein gi|12724740|gb|AAK05820.1|AE006402_8 tmRNA-binding protein SmpB [Lactococcus lactis subsp. lactis Il1403] gi|281375977|gb|ADA65468.1| SsrA-binding protein [Lactococcus lactis subsp. lactis KF147] gi|326407188|gb|ADZ64259.1| SsrA-binding protein [Lactococcus lactis subsp. lactis CV56] Length = 155 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 N K ++ N+KAR++Y I +FEAGIVLTGTE+KS+R +K+ + D +A N E+WL+ Sbjct: 3 KNTEDKPLAQNKKARHDYEIYETFEAGIVLTGTEIKSVRQAKIQLKDGFARVRNGEVWLS 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I + Q N FN R RKLLL+K+EI ++ + G+T +P+K+Y G AK+ Sbjct: 63 NVHIAPFEQGNIFNVEELRTRKLLLNKKEIAKIDKELSGTGITFIPLKVYLK-NGFAKVL 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + LA+GKK+YDKRET K+++ +R R ++ +N Sbjct: 122 MGLARGKKDYDKRETLKRKEQNRDIARQIKAYN 154 >gi|262172132|ref|ZP_06039810.1| tmRNA-binding protein SmpB [Vibrio mimicus MB-451] gi|261893208|gb|EEY39194.1| tmRNA-binding protein SmpB [Vibrio mimicus MB-451] Length = 161 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY + Sbjct: 1 MTKKKSNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R R+LLLS+RE+ L+ + R+GMTL + +Y++ Sbjct: 61 DGEAFISGMTIIPLQQASTHVVANPTRIRRLLLSRRELDNLFGRINREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +A+GKK +DKRE K+++W RQK R+++ Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157 >gi|114327860|ref|YP_745017.1| SsrA-binding protein [Granulibacter bethesdensis CGDNIH1] gi|122327176|sp|Q0BSV8|SSRP_GRABC RecName: Full=SsrA-binding protein gi|114316034|gb|ABI62094.1| ssrA-binding protein [Granulibacter bethesdensis CGDNIH1] Length = 162 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 3/161 (1%) Query: 1 MSLKSRGNPPK---KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ G V + NRKAR++Y I + EAG+VL G EVKSLR + +S+++A Sbjct: 1 MAETKSGKSGLISHGVAAQNRKARFDYTIKETVEAGLVLKGPEVKSLRHGRATLSEAWAG 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E++L N+YIPEY PR RKLLL +++I+ L AV++ G T+VP++I+F Sbjct: 61 ERDGEMFLFNAYIPEYQGGVLSRFEPRSPRKLLLKRKQINHLLGAVQKQGQTVVPLQIHF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 N +G+AK+ L +A+G+ DKR RDW R K R++RE Sbjct: 121 NERGMAKVLLGVAEGRNKADKRAAIASRDWQRDKARLMREK 161 >gi|114776883|ref|ZP_01451926.1| SsrA-binding protein [Mariprofundus ferrooxydans PV-1] gi|114552969|gb|EAU55400.1| SsrA-binding protein [Mariprofundus ferrooxydans PV-1] Length = 146 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 59/143 (41%), Positives = 92/143 (64%), Gaps = 1/143 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 NR+AR+ YHI+ + E G++LTG EVKS+R+ + N+++++ N + L +I Y Sbjct: 3 IVNRRARHEYHILETLETGMMLTGPEVKSIRLGQANLAEAHCIIRNGRMLLIGCHISPYK 62 Query: 75 QANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 A N P R+R+LLL+KRE+ RL ++ G+T+VP+K+YFN + AK+++ LA+GK Sbjct: 63 PAAMNNPADPTRSRQLLLNKRELERLVGRLKESGLTIVPLKLYFNERNYAKLEVGLARGK 122 Query: 134 KNYDKRETEKKRDWDRQKHRILR 156 K +DKR K+RD R R R Sbjct: 123 KMHDKRAAIKERDVKRDLQRTYR 145 >gi|329729662|gb|EGG66063.1| SsrA-binding protein [Staphylococcus aureus subsp. aureus 21193] Length = 154 Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats. Identities = 69/156 (44%), Positives = 100/156 (64%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA +N E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKNGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N YI Y + NRFNH P R+RKLLL KREI +L R G ++VP+K+Y G Sbjct: 59 MYLNNMYIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDQTREIGYSIVPLKLYLK-HGH 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAVKRDVARDMKAR 153 >gi|157961110|ref|YP_001501144.1| SsrA-binding protein [Shewanella pealeana ATCC 700345] gi|167623277|ref|YP_001673571.1| SsrA-binding protein [Shewanella halifaxensis HAW-EB4] gi|189046845|sp|B0TLG2|SSRP_SHEHH RecName: Full=SsrA-binding protein gi|189046846|sp|A8H222|SSRP_SHEPA RecName: Full=SsrA-binding protein gi|157846110|gb|ABV86609.1| SsrA-binding protein [Shewanella pealeana ATCC 700345] gi|167353299|gb|ABZ75912.1| SsrA-binding protein [Shewanella halifaxensis HAW-EB4] Length = 164 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 53/160 (33%), Positives = 88/160 (55%), Gaps = 3/160 (1%) Query: 1 MSLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY Sbjct: 1 MAKKNAKNSKNSSASIARNKRATFDYKFEEKLEAGLSLMGWEVKSIRMGKVNLSESYVFL 60 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 E +L I ++ P R+RKLLL ++E+ +L V R G ++VP+ +Y+ Sbjct: 61 REGEAYLFGCTIAPLNTASSHVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI++ L +GKK +DKR+ K R+W +K R +++ Sbjct: 121 QKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTIKK 160 >gi|288801238|ref|ZP_06406693.1| SsrA-binding protein [Prevotella sp. oral taxon 299 str. F0039] gi|288331849|gb|EFC70332.1| SsrA-binding protein [Prevotella sp. oral taxon 299 str. F0039] Length = 159 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 61/155 (39%), Positives = 97/155 (62%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + + NRKA ++Y + +F AGIVLTGTE+KS+R K ++ D++ + EI Sbjct: 5 KKNSDKKSSIQIKNRKASFDYFFIDTFTAGIVLTGTEIKSIRQGKASLVDTFCYIHDGEI 64 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 W+ I Y + NH +R+RKLLL KREI RL + G+T+VP+ ++ + G A Sbjct: 65 WVKGMNITPYFYGSFTNHEAKRDRKLLLKKREIRRLEEETKSVGVTIVPILLFIDQNGRA 124 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ALA+GKK YDKR+T K+++ R+ R ++ + Sbjct: 125 KVNIALARGKKEYDKRQTLKEKEDRREMDRAIKRY 159 >gi|322517145|ref|ZP_08070029.1| SsrA-binding protein [Streptococcus vestibularis ATCC 49124] gi|322124295|gb|EFX95806.1| SsrA-binding protein [Streptococcus vestibularis ATCC 49124] Length = 154 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 103/148 (69%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R ++V + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARVQLKDGYAQIKNGEAWLINVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQDPDRTRKLLLKKKQITKLQNDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R +RI++ N Sbjct: 126 GKHDYDKRESIKRREQERDINRIIKSVN 153 >gi|268680248|ref|YP_003304679.1| SsrA-binding protein [Sulfurospirillum deleyianum DSM 6946] gi|268618279|gb|ACZ12644.1| SsrA-binding protein [Sulfurospirillum deleyianum DSM 6946] Length = 154 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ N+KA ++Y I+ EAGIVL G+EVK++R +VN+ DS+ E +L N++I Sbjct: 5 VARNKKAFHDYEILEKLEAGIVLQGSEVKAIRQGRVNLKDSFVKIIKGEAFLLNAHISHL 64 Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 AN F R RKLLL +++ + V +DG+T+VP+ IYFNAK LAK+++ALA+G Sbjct: 65 STANLNFAPNERAPRKLLLHVKQLRKWDMKVAKDGLTIVPLAIYFNAKNLAKVEIALARG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K +DKRE+ K++D R+ ++ H Sbjct: 125 KNEHDKRESLKEKDAQREAQTAMKNH 150 >gi|239947283|ref|ZP_04699036.1| SsrA-binding protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239921559|gb|EER21583.1| SsrA-binding protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 152 Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 TEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|258620030|ref|ZP_05715070.1| SsrA-binding protein [Vibrio mimicus VM573] gi|258587763|gb|EEW12472.1| SsrA-binding protein [Vibrio mimicus VM573] Length = 161 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 94/158 (59%), Gaps = 3/158 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY + Sbjct: 1 MTKKKSNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVFIK 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 E +++ I Q + P R R+LLLS+RE+ L+ + R+GMTL + +Y++ Sbjct: 61 EGEAFISGMTITPLQQASTHVVANPTRIRRLLLSRRELDNLFGRINREGMTLTALSLYWS 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 + KI + +A+GKK +DKRE K+++W RQK R+++ Sbjct: 121 -RSWVKIKIGVAKGKKLHDKREDLKEKEWQRQKDRVMK 157 >gi|315658864|ref|ZP_07911731.1| SsrA-binding protein [Staphylococcus lugdunensis M23590] gi|315495988|gb|EFU84316.1| SsrA-binding protein [Staphylococcus lugdunensis M23590] Length = 154 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREVGYSIIPLKLYLK-HGH 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGVARGKKKYDKRQALKEKAMKRDVDRAMKAR 153 >gi|319936743|ref|ZP_08011156.1| SsrA-binding protein [Coprobacillus sp. 29_1] gi|319808300|gb|EFW04865.1| SsrA-binding protein [Coprobacillus sp. 29_1] Length = 148 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 68/146 (46%), Positives = 100/146 (68%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ N+KA ++Y I+ ++EAGI L GTE+KS+R VN+ DS+ NDE ++ N +I Sbjct: 2 KIVAQNKKAYHDYFILDTYEAGIELQGTEIKSIRKGSVNLKDSFIRIRNDEAFIDNMHIA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NRFNH P R RKLLL K+EI +L ++ +G+T+VP K+YFN K+++ALA+ Sbjct: 62 SYEQGNRFNHEPLRQRKLLLHKKEIKKLQKELKENGLTIVPTKLYFNTS-KLKVEIALAR 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK YDKR+ K++D R + L+ Sbjct: 121 GKKLYDKRQDLKEKDSKRDIEKALKN 146 >gi|121998267|ref|YP_001003054.1| SsrA-binding protein [Halorhodospira halophila SL1] gi|187611481|sp|A1WX40|SSRP_HALHL RecName: Full=SsrA-binding protein gi|121589672|gb|ABM62252.1| SsrA-binding protein [Halorhodospira halophila SL1] Length = 165 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 96/160 (60%), Gaps = 4/160 (2%) Query: 2 SLK--SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 S K V++ NRKA +++ + EAG+ L G EVK+LR +VN+++S+ Sbjct: 5 SKKAGKSKKTEGNVIALNRKAGFDFFVEERLEAGLALEGWEVKALRAKRVNLTESHVLVR 64 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 E WL I + + P R RKLLL +REI+RL AV RDG T+VP+K+Y+ Sbjct: 65 RGEAWLIGCNITPLSTASTHIHPDPTRTRKLLLHRREINRLIGAVDRDGYTVVPLKLYWK 124 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AKI++ +A+GKK DKR +K++DW RQ+ R+L+ Sbjct: 125 -RGRAKIEIGVAKGKKKQDKRADKKEQDWQRQRERLLKHK 163 >gi|152981401|ref|YP_001353576.1| SsrA-binding protein [Janthinobacterium sp. Marseille] gi|151281478|gb|ABR89888.1| SsrA(tmRNA)-binding protein [Janthinobacterium sp. Marseille] Length = 149 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 94/146 (64%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++Y I +EAG++L G EVK++R +V + ++Y +EI+L +++ Sbjct: 3 IVDNRKAFHDYFIEDRYEAGVMLQGWEVKAIRAGRVQLKEAYVIARGNEIFLFGAHVSAL 62 Query: 74 LQANRFNHYP-RRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 A+ F+H R RKLLL EI +L + V + G T+VP+ +++ +G K D+ALA+G Sbjct: 63 NSASSFSHPEAVRTRKLLLHAAEIKKLLSKVDQSGFTMVPLNLHW-VRGRVKCDIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR TEK RDW R+ +I++ H Sbjct: 122 KKEYDKRNTEKDRDWMREHQKIMKIH 147 >gi|332041660|gb|EGI78016.1| SsrA-binding protein [Hylemonella gracilis ATCC 19624] Length = 163 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 60/163 (36%), Positives = 93/163 (57%), Gaps = 5/163 (3%) Query: 1 MSLKSRGNPPKKV---VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 MS + + ++DN+KA +NYHI FEAG+VL G EVK+LR KV ++D Y Sbjct: 1 MSTDKKKTAKTALPARIADNKKALFNYHIEERFEAGMVLEGWEVKALREGKVQLTDGYVV 60 Query: 58 FENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 ++ E++L I + R +KLLL K EI RL V + G TLVP+ ++ Sbjct: 61 IKSGELFLIGCQINPLNTASTHVRPDSVRTKKLLLHKEEIRRLVGKVEQKGHTLVPLNLH 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + G K+++ALA+GK +DKR+T K R+ R+ R +++ + Sbjct: 121 WK-NGKVKVEIALAKGKAEHDKRDTIKDREGKREVERAMKQRS 162 >gi|269798069|ref|YP_003311969.1| SsrA-binding protein [Veillonella parvula DSM 2008] gi|269094698|gb|ACZ24689.1| SsrA-binding protein [Veillonella parvula DSM 2008] Length = 156 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 102/157 (64%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ KS + +++DNRKAR+++HI ++EAGI LTGTE+KS+R K+N+ DS+ + Sbjct: 1 MAKKSSPS----LIADNRKARHDFHIHETYEAGIALTGTEIKSIRQGKLNLKDSFCRIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ L +I Y Q NRFNH P R RKLL+ K EI++L+A V+ G +LVP+ +F+ Sbjct: 57 RELLLYGVHISPYEQGNRFNHEPERTRKLLMHKSEINKLHAQVKEKGFSLVPLNFHFS-H 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ + L GKK YDKR+ +RD R + ++E Sbjct: 116 GYVKVTVGLVTGKKIYDKRQDMAERDAKRDIAKRIKE 152 >gi|19745622|ref|NP_606758.1| SsrA-binding protein [Streptococcus pyogenes MGAS8232] gi|23822166|sp|Q8P244|SSRP_STRP8 RecName: Full=SsrA-binding protein gi|19747750|gb|AAL97257.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 155 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 70/147 (47%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KAR +YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 8 ILAQNKKARLDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIAP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+G Sbjct: 68 FEQGNIWNADPERTRKLLLKKREITHLANELKGTGMTLVPLKVYLKD-GFAKVLIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K +YDKRET K+RD +R + ++ +N Sbjct: 127 KHDYDKRETIKRRDQERDIKKQMKHYN 153 >gi|67459053|ref|YP_246677.1| SsrA-binding protein [Rickettsia felis URRWXCal2] gi|75536513|sp|Q4ULR1|SSRP_RICFE RecName: Full=SsrA-binding protein gi|67004586|gb|AAY61512.1| tmRNA-binding protein [Rickettsia felis URRWXCal2] Length = 152 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|282853675|ref|ZP_06263012.1| SsrA-binding protein [Propionibacterium acnes J139] gi|282583128|gb|EFB88508.1| SsrA-binding protein [Propionibacterium acnes J139] gi|314983202|gb|EFT27294.1| SsrA-binding protein [Propionibacterium acnes HL110PA3] gi|315092423|gb|EFT64399.1| SsrA-binding protein [Propionibacterium acnes HL110PA4] Length = 160 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 KVV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVKVVARNRRAAHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L V G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREVDGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154 >gi|195978520|ref|YP_002123764.1| SsrA-binding protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|238689828|sp|B4U434|SSRP_STREM RecName: Full=SsrA-binding protein gi|195975225|gb|ACG62751.1| SsrA-binding protein SmpB [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 155 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ ++KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 7 NVLAQHKKARHDYHIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+ Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREIQHLADELKGTGMTLVPLKVYLKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R+++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIRRVMKSVN 153 >gi|328948019|ref|YP_004365356.1| SsrA-binding protein [Treponema succinifaciens DSM 2489] gi|328448343|gb|AEB14059.1| SsrA-binding protein [Treponema succinifaciens DSM 2489] Length = 154 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K V+ NRKA +NY + S E GI L G+EVKS++ ++ DS+A EN E+WL N +I Sbjct: 5 RKTVAQNRKAHFNYIVTDSIECGIALEGSEVKSIKAGNISFGDSFAFIENGEVWLQNFHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY ++ FNH P R +KLLL K EI RL G TLVP+++Y KGL KI+L L Sbjct: 65 SEYSFSSVFNHEPDRKKKLLLHKDEIKRLQRKTEEKGFTLVPLEVYLK-KGLVKINLGLC 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR K RD R R R Sbjct: 124 KGKKEFDKRAAIKDRDVKRDIAREFRNR 151 >gi|188995334|ref|YP_001929586.1| SsrA-binding protein [Porphyromonas gingivalis ATCC 33277] gi|188595014|dbj|BAG33989.1| putative SsrA-binding protein [Porphyromonas gingivalis ATCC 33277] Length = 153 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 99/152 (65%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + K ++ N++A ++Y I+ + AGIVL GTE+KSLR+ K + D+Y F E+W+ Sbjct: 2 KEKIQKNILIKNKRATFDYEILDVYTAGIVLVGTEIKSLRLGKGGLVDTYCYFHRGELWV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N YI EY NH RR+RKLLL+++E+ +L A + G T+VP+K++ N +GLAK+ Sbjct: 62 KNMYIAEYFYGTYNNHVARRDRKLLLNRKELRKLEEASKSVGTTIVPLKLFINERGLAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + LA+GKK YDKR + K+RD R+ R L+ Sbjct: 122 QIGLARGKKQYDKRASIKERDDRREMDRALKR 153 >gi|120612028|ref|YP_971706.1| SsrA-binding protein [Acidovorax citrulli AAC00-1] gi|166222351|sp|A1TSJ4|SSRP_ACIAC RecName: Full=SsrA-binding protein gi|120590492|gb|ABM33932.1| SsrA-binding protein [Acidovorax citrulli AAC00-1] Length = 157 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 88/159 (55%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++DN+KA +NY EAG+VL G EVK+LR KV ++D Y Sbjct: 1 MAKKPETLSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIRE 57 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E++L I + + R +KLLL K EI RL A V + G TLVP+ +++ Sbjct: 58 GELYLIGCQINPLKTASTHVSPDAVRTKKLLLHKDEIKRLTAKVEQKGYTLVPLNLHWT- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK ++ALA+GK +DKR+T K+R+ R+ R ++ Sbjct: 117 NGRAKCEIALAKGKAEHDKRDTIKEREGKREVERAMKSR 155 >gi|300727176|ref|ZP_07060593.1| SsrA-binding protein [Prevotella bryantii B14] gi|299775524|gb|EFI72117.1| SsrA-binding protein [Prevotella bryantii B14] Length = 159 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 67/159 (42%), Positives = 101/159 (63%), Gaps = 3/159 (1%) Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 +K ++ + N+KA ++Y V +F AGIVLTGTE+KS+R K ++ D++ Sbjct: 1 MKKEDQEVRRKSPIQIKNKKASFDYFFVDTFTAGIVLTGTEIKSIRDGKASLVDTFCDIY 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EIW+ NSYI Y + NH RR+RKLLL+KREIH+L AV+ G T+VP ++ + Sbjct: 61 QGEIWVKNSYIAPYFYGSFSNHSARRDRKLLLNKREIHKLEEAVKTPGNTIVPTLLFIDD 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK YDKR+T +++ R+ R ++ Sbjct: 121 HGRAKLDIALARGKKEYDKRQTLREKQDRREMDRAIKHF 159 >gi|218263099|ref|ZP_03477330.1| hypothetical protein PRABACTJOHN_03011 [Parabacteroides johnsonii DSM 18315] gi|218222951|gb|EEC95601.1| hypothetical protein PRABACTJOHN_03011 [Parabacteroides johnsonii DSM 18315] Length = 154 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 102/153 (66%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + N++A ++Y ++ +F AGIVLTGTE+KS+R+ K ++ D++ E E+W+ Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N Y+ EY NH RR+RKLLL+K+E+ ++ A R +G T++P +++ N KGLAK+ Sbjct: 62 KNMYVAEYFYGTYNNHTARRDRKLLLTKKELRKIEGAARNNGFTIIPTRLFINDKGLAKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+A+GKK YDKR++ K+RD R+ R + + Sbjct: 122 VVAIAKGKKEYDKRDSIKERDDRREMDRAFKRN 154 >gi|300770821|ref|ZP_07080698.1| SsrA-binding protein [Sphingobacterium spiritivorum ATCC 33861] gi|300762094|gb|EFK58913.1| SsrA-binding protein [Sphingobacterium spiritivorum ATCC 33861] Length = 151 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 98/146 (67%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 + N++A + YH++ + AG+ L GTE+KS+R K NI+DS+ F +++ N +I Sbjct: 6 NINIKNKRASFEYHLLDKYVAGLQLLGTEIKSIREGKANINDSFCAFFEKGLYIRNMHIA 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY + +NH +R+R+LLL+KRE+ +L A G T+VP++I+ N +G AK+++ALAQ Sbjct: 66 EYSHGSFYNHEAKRDRQLLLTKRELKKLRAKGDEKGFTIVPLRIFVNERGFAKVEIALAQ 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK++DKR+T K RD R+ R ++ Sbjct: 126 GKKDFDKRDTIKDRDAKRELDRAMKR 151 >gi|300088563|ref|YP_003759085.1| SsrA-binding protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528296|gb|ADJ26764.1| SsrA-binding protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 152 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 68/148 (45%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK+V+ N KA +NY+I EAG+VLTGTE+KS+R +V++ D+Y +N E+WL N++I Sbjct: 4 KKIVATNHKAYHNYYISDPMEAGLVLTGTEIKSVRGGRVSLGDAYVRPDNGELWLLNAHI 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + +H P R RKLL+ K+E+ ++ A ++ G+TLVP K+Y +AK+++A+ Sbjct: 64 ARYDPGSYMSHEPTRRRKLLVHKKEMRQMLARIKEQGLTLVPTKVYIKGN-VAKVEVAVG 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKRE KKRD DR+ R+LR Sbjct: 123 KGKKLYDKREVIKKRDSDRELGRVLRAR 150 >gi|288924973|ref|ZP_06418909.1| SsrA-binding protein [Prevotella buccae D17] gi|288338163|gb|EFC76513.1| SsrA-binding protein [Prevotella buccae D17] Length = 154 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 95/146 (65%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N+KA + Y + ++ AGIVLTGTE+KS+R + ++ D++ N E+WL I Sbjct: 9 IQIRNKKASFEYAFLDTYTAGIVLTGTEIKSIRQGRASLVDTFCFIHNGEMWLKGMNISP 68 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH +R+RKLLL+KREIH+L A ++ G T+VP ++ + G AK+D+ALA+G Sbjct: 69 YFYGSFSNHEAKRDRKLLLNKREIHKLQEATKQVGFTIVPTLVFIDDHGRAKVDIALARG 128 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR+T ++++ R+ R ++ Sbjct: 129 KKEFDKRQTIREKEDKREMERAIKRF 154 >gi|323700105|ref|ZP_08112017.1| SsrA-binding protein [Desulfovibrio sp. ND132] gi|323460037|gb|EGB15902.1| SsrA-binding protein [Desulfovibrio desulfuricans ND132] Length = 158 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 89/159 (55%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++ N++AR Y I+ +FEAGI L G+EVKSLR +V+ D Y +F Sbjct: 1 MAKKKNKTLSPDTIAVNKQARRLYEILETFEAGISLVGSEVKSLRGGQVSFKDGYVSFRQ 60 Query: 61 DEIWLTNSYIPEYLQANRFNHY-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +L +I Y + ++ + P R R+LLL K EI L A + G+T+VPMK+YF+ Sbjct: 61 GSAFLVGVHIAPYEKTGTYDQHDPERARRLLLHKHEISVLQAKTEQKGLTVVPMKMYFS- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G K+ L L +GK + K++ K RD R R L + Sbjct: 120 RGKVKVQLGLGRGKNVHSKKQDLKDRDIARDTQRQLASY 158 >gi|23099881|ref|NP_693347.1| SsrA-binding protein [Oceanobacillus iheyensis HTE831] gi|30173296|sp|Q8ENQ2|SSRP_OCEIH RecName: Full=SsrA-binding protein gi|22778112|dbj|BAC14382.1| ssrA-binding protein [Oceanobacillus iheyensis HTE831] Length = 155 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 98/152 (64%), Gaps = 2/152 (1%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLT 66 KV++ N+KA ++Y I ++EAGIVL GTE+KS+R +VNI DS+A E+ L Sbjct: 3 KGNGKVIAQNKKASHDYFIEDTYEAGIVLHGTEIKSIRNGRVNIKDSHARIDRKGEVQLI 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I EY Q NR+NH P R+RKLLL ++EI +L ++ G LVP+KIY G AK+ Sbjct: 63 NLHIAEYEQGNRYNHDPTRSRKLLLHRKEIDKLIGLTQQQGYALVPLKIYLK-NGFAKVL 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + L +GKK YDKRE K++ R R +++H Sbjct: 122 IGLGKGKKKYDKREDLKQKQMKRDVDRAIKDH 153 >gi|150007070|ref|YP_001301813.1| SsrA-binding protein [Parabacteroides distasonis ATCC 8503] gi|255015304|ref|ZP_05287430.1| SsrA-binding protein [Bacteroides sp. 2_1_7] gi|256840227|ref|ZP_05545735.1| SsrA-binding protein [Parabacteroides sp. D13] gi|262381065|ref|ZP_06074203.1| SsrA-binding protein [Bacteroides sp. 2_1_33B] gi|298377491|ref|ZP_06987443.1| SsrA-binding protein [Bacteroides sp. 3_1_19] gi|301311267|ref|ZP_07217195.1| SsrA-binding protein [Bacteroides sp. 20_3] gi|166223235|sp|A6L927|SSRP_PARD8 RecName: Full=SsrA-binding protein gi|149935494|gb|ABR42191.1| SsrA-binding protein [Parabacteroides distasonis ATCC 8503] gi|256737499|gb|EEU50825.1| SsrA-binding protein [Parabacteroides sp. D13] gi|262296242|gb|EEY84172.1| SsrA-binding protein [Bacteroides sp. 2_1_33B] gi|298265510|gb|EFI07171.1| SsrA-binding protein [Bacteroides sp. 3_1_19] gi|300830841|gb|EFK61483.1| SsrA-binding protein [Bacteroides sp. 20_3] Length = 153 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 101/152 (66%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + N++A ++Y ++ +F AGIVLTGTE+KS+R+ K ++ D++ E E+W+ Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N YI EY NH RR+RKLLL+K+E+ ++ AVR G T+VP +++ N KGLAK+ Sbjct: 62 KNMYIAEYFYGTYNNHNARRDRKLLLTKKELRKIEGAVRASGFTIVPTRLFINEKGLAKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+A+GKK YDKR++ ++RD R+ R + Sbjct: 122 VVAIARGKKEYDKRDSIRERDDRREMDRAFKR 153 >gi|301063447|ref|ZP_07203979.1| SsrA-binding protein [delta proteobacterium NaphS2] gi|300442386|gb|EFK06619.1| SsrA-binding protein [delta proteobacterium NaphS2] Length = 151 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V N+KAR+ Y + FEAG+VL G EVKSLR + ++ DSYA + E++L N +I Sbjct: 4 KIVCQNKKARHEYFLDEFFEAGLVLMGAEVKSLREGRASLVDSYARVKQGEVFLHNMHIT 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A+ P R RKLLL+KREI RL + G +L+P K+YF +G AK+++ALA+ Sbjct: 64 PYPFAHHMEMDPMRIRKLLLNKREIKRLIGKTEQKGYSLIPTKVYFT-RGKAKVEIALAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK YDKR K+++ R + + Sbjct: 123 GKKKYDKRSALKEKELKRDMDQARKR 148 >gi|225868150|ref|YP_002744098.1| SsrA-binding protein [Streptococcus equi subsp. zooepidemicus] gi|259511430|sp|C0MCH3|SSRP_STRS7 RecName: Full=SsrA-binding protein gi|225701426|emb|CAW98529.1| SsrA-binding protein [Streptococcus equi subsp. zooepidemicus] Length = 155 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ ++KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 7 NVLAQHKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI L ++ GMTLVP+K+Y G AK+ + LA+ Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREIQHLADELKGTGMTLVPLKVYLKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R+++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIRRVMKSVN 153 >gi|148244509|ref|YP_001219203.1| SsrA-binding protein [Candidatus Vesicomyosocius okutanii HA] gi|166223472|sp|A5CX31|SSRP_VESOH RecName: Full=SsrA-binding protein gi|146326336|dbj|BAF61479.1| SsrA-binding protein [Candidatus Vesicomyosocius okutanii HA] Length = 161 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K++ ++ N+KAR+ Y I ++ EAG+ L G EVKSLR SKV I +SY + Sbjct: 1 MAKKNK-KISLNTIAFNKKARHVYFIEQTLEAGLSLEGWEVKSLRDSKVQIKESYVILRS 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +EI+L ++I + N P R RKLLL++ EI+R+ + + G T+V +K+Y+ Sbjct: 60 NEIFLYGAHISPLKSVSTHVNSDPIRTRKLLLNRLEINRIKEKINQKGATIVALKLYW-I 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +G+ K+++ LA+GKK+YDKR+ K RDW R K R L++ N Sbjct: 119 RGMVKLEIGLAKGKKSYDKRQDNKLRDWQRDKQRTLKQIN 158 >gi|187631666|sp|A8F1K4|SSRP_RICM5 RecName: Full=SsrA-binding protein Length = 152 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 103/148 (69%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+AT E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHATDTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ +++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIQEKDWKRDQSRLIRQK 152 >gi|27467484|ref|NP_764121.1| SsrA-binding protein [Staphylococcus epidermidis ATCC 12228] gi|57866445|ref|YP_188044.1| SsrA-binding protein [Staphylococcus epidermidis RP62A] gi|242242153|ref|ZP_04796598.1| SsrA-binding protein [Staphylococcus epidermidis W23144] gi|251810217|ref|ZP_04824690.1| SsrA-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|282875636|ref|ZP_06284507.1| SsrA-binding protein [Staphylococcus epidermidis SK135] gi|293368246|ref|ZP_06614875.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|30173245|sp|Q8CPX9|SSRP_STAES RecName: Full=SsrA-binding protein gi|67461883|sp|Q5HQU5|SSRP_STAEQ RecName: Full=SsrA-binding protein gi|27315027|gb|AAO04163.1|AE016745_262 ssrA-binding protein [Staphylococcus epidermidis ATCC 12228] gi|57637103|gb|AAW53891.1| SsrA-binding protein [Staphylococcus epidermidis RP62A] gi|242234408|gb|EES36720.1| SsrA-binding protein [Staphylococcus epidermidis W23144] gi|251806269|gb|EES58926.1| SsrA-binding protein [Staphylococcus epidermidis BCM-HMP0060] gi|281295663|gb|EFA88186.1| SsrA-binding protein [Staphylococcus epidermidis SK135] gi|291317669|gb|EFE58086.1| SsrA-binding protein [Staphylococcus epidermidis M23864:W2(grey)] gi|319401140|gb|EFV89355.1| ssrA-binding protein [Staphylococcus epidermidis FRI909] gi|329723322|gb|EGG59852.1| SsrA-binding protein [Staphylococcus epidermidis VCU144] gi|329736731|gb|EGG72996.1| SsrA-binding protein [Staphylococcus epidermidis VCU028] gi|329737989|gb|EGG74213.1| SsrA-binding protein [Staphylococcus epidermidis VCU045] Length = 156 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 97/158 (61%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DS+A Sbjct: 1 MAKKKSKSPG--TLAENRKARHDYNIEDTIEAGIALRGTEIKSIRRGSANLKDSFAQVRR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + NRFNH P R RKLLL K+EI +L R G +++P+K+Y Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRTRKLLLHKKEIQKLGERTREIGYSIIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 GQCKVLLGVARGKKKYDKRQALKEKAVKRDIDRAVKAR 155 >gi|298368620|ref|ZP_06979938.1| SsrA-binding protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282623|gb|EFI24110.1| SsrA-binding protein [Neisseria sp. oral taxon 014 str. F0314] Length = 148 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 93/145 (64%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R +V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDQLEAGLVLEGWEVKAVRAGRVQLKESYIHWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL++ EI++L R G T+VP+ +++N +G K+D+ LA+G Sbjct: 63 PTASTHVKPDPVRQRKLLLNRSEINKLIGKTERAGYTVVPLNLHYN-RGKIKMDIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R++++ Sbjct: 122 KKQHDKRQSLKEADWKREKQRLMKQ 146 >gi|325856909|ref|ZP_08172407.1| SsrA-binding protein [Prevotella denticola CRIS 18C-A] gi|325483282|gb|EGC86259.1| SsrA-binding protein [Prevotella denticola CRIS 18C-A] Length = 159 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 62/159 (38%), Positives = 93/159 (58%), Gaps = 3/159 (1%) Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 + +K V N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+ Sbjct: 1 MNKEQQERRKKSPVQIRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCYIN 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH RR RKLLL+++EI L A + G T++P I+ + Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEARRPRKLLLTRKEIRNLEAESKTPGFTIIPTLIFIDE 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK YDKR+T K+++ R+ R + + Sbjct: 121 HGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRARKHY 159 >gi|150391302|ref|YP_001321351.1| SsrA-binding protein [Alkaliphilus metalliredigens QYMF] gi|187611466|sp|A6TU24|SSRP_ALKMQ RecName: Full=SsrA-binding protein gi|149951164|gb|ABR49692.1| SsrA-binding protein [Alkaliphilus metalliredigens QYMF] Length = 157 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 73/158 (46%), Positives = 99/158 (62%), Gaps = 6/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +K ++ N+KAR++Y I +FEAG+VL GTEVKS+R K+NI + YA EN Sbjct: 1 MAEK-----GQKSLAVNKKARFDYLIEDTFEAGMVLVGTEVKSIRQGKINIKEGYARIEN 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI+L N +I Y Q N FN P R RKLLL K EI +L V++ G TLVPMK+Y Sbjct: 56 SEIYLHNVHISPYEQGNIFNKDPLRIRKLLLHKAEIRKLIGYVQQKGYTLVPMKVYL-QN 114 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL K+ L + GKK +DKR+ K+D R+ + L + Sbjct: 115 GLVKLQLGVGVGKKLHDKRQDMAKKDSQRRIQKELGQR 152 >gi|241764261|ref|ZP_04762292.1| SsrA-binding protein [Acidovorax delafieldii 2AN] gi|241366384|gb|EER60906.1| SsrA-binding protein [Acidovorax delafieldii 2AN] Length = 157 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 58/158 (36%), Positives = 88/158 (55%), Gaps = 3/158 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P + ++DN+KA YNY EAG+VL G EVK+LR KV ++D Y E Sbjct: 1 MAKKPDPTSR-IADNKKAAYNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVLIREGE 59 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L I + N R +KLLL K +I RL V + G TLVP+ +++ G Sbjct: 60 LYLLGCLIHPLKTASTHVNPESARTKKLLLKKDDIKRLIGKVEQKGYTLVPINLHWK-NG 118 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K ++ALA+GK +DKR+T K R+ R+ R ++ N Sbjct: 119 FVKCEIALAKGKAEHDKRDTIKDREGKREVERAMKSRN 156 >gi|34580489|ref|ZP_00141969.1| small protein B homolog [Rickettsia sibirica 246] gi|28261874|gb|EAA25378.1| small protein B homolog [Rickettsia sibirica 246] Length = 152 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|319891786|ref|YP_004148661.1| tmRNA-binding protein SmpB [Staphylococcus pseudintermedius HKU10-03] gi|317161482|gb|ADV05025.1| tmRNA-binding protein SmpB [Staphylococcus pseudintermedius HKU10-03] gi|323465045|gb|ADX77198.1| SsrA-binding protein [Staphylococcus pseudintermedius ED99] Length = 154 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA ++ EI+L Sbjct: 3 KKSGKGTLAENRKARHDYNIEDTIEAGIALQGTEIKSIRRGSANLKDSYAQVKHGEIFLH 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I Y + NRFNH P R RKLLL KREI +L R G +++P+K+Y G K+ Sbjct: 63 NMHIAPYEEGNRFNHDPLRVRKLLLHKREILKLGERTREIGYSIIPLKLYLK-HGNCKVL 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +A+GKK YDKR++ K++ R R +++ Sbjct: 122 LGVARGKKKYDKRQSLKEKAVKRDMDRAMKQK 153 >gi|329896057|ref|ZP_08271293.1| tmRNA-binding protein SmpB [gamma proteobacterium IMCC3088] gi|328922017|gb|EGG29381.1| tmRNA-binding protein SmpB [gamma proteobacterium IMCC3088] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + ++ N++A +++ ++ FEAGI LTG EVKSLR KV ++DSY +N Sbjct: 1 MSKK-KPKQSSNQIASNKRASFDFKLLDDFEAGISLTGWEVKSLRAGKVQLTDSYVIMKN 59 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L S I + F P R RKLLL K+E+ R+ AA+++ G T V +Y+ Sbjct: 60 GEAYLLGSQITPLATASTHFVTDPTRTRKLLLHKKELARILAAIQQKGQTCVCTGLYWKG 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K +ALAQGK+ +DKR+ K+RDW+RQK RI+RE+ Sbjct: 120 H-LVKAKIALAQGKQAHDKRDATKERDWNRQKQRIVREN 157 >gi|327314529|ref|YP_004329966.1| SsrA-binding protein [Prevotella denticola F0289] gi|326945660|gb|AEA21545.1| SsrA-binding protein [Prevotella denticola F0289] Length = 159 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + + K V N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+ Sbjct: 1 MNKEQQERRRKSPVQIRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCYIN 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH RR RKLLL+++EI L A + G T++P I+ + Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEARRPRKLLLTRKEIRNLEAESKTPGFTIIPTLIFIDE 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK YDKR+T K+++ R+ R + + Sbjct: 121 HGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRARKHY 159 >gi|124266809|ref|YP_001020813.1| SsrA-binding protein [Methylibium petroleiphilum PM1] gi|166223226|sp|A2SG89|SSRP_METPP RecName: Full=SsrA-binding protein gi|124259584|gb|ABM94578.1| SsrA-binding protein [Methylibium petroleiphilum PM1] Length = 155 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 93/146 (63%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++DN+KAR+NY I FEAG+VL G EVK++R +V ++D Y ++ E++L I Sbjct: 3 IADNKKARFNYTIEEQFEAGMVLEGWEVKAIRAGQVQLTDGYVVVKDGELFLIGCRINPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + R +KLL+ K EI RL V + G TLVP+ +++ G K D+ALA+G Sbjct: 63 RTASTHVHPQADRTKKLLMKKDEIRRLVGKVEQKGYTLVPLNLHYKG-GRVKADIALAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K +DKRETEKKRDW+R+K +++R Sbjct: 122 KDLHDKRETEKKRDWEREKGQLMRHK 147 >gi|254458676|ref|ZP_05072100.1| SsrA-binding protein [Campylobacterales bacterium GD 1] gi|207084442|gb|EDZ61730.1| SsrA-binding protein [Campylobacterales bacterium GD 1] Length = 150 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA ++Y + FEAG+VL G+EVK +R +VNI DS+ F E +L N++I Sbjct: 4 TIAKNKKAYFDYFLEEKFEAGLVLQGSEVKGIRAKRVNIKDSFIRFVQGEAFLFNAHIGR 63 Query: 73 YLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + + + R +RKLLL K+++ + AV RDG T+VP++IYFN + L KI +A+A+ Sbjct: 64 LETTHHYYTHEERGSRKLLLHKKQLVSMKKAVDRDGYTIVPLQIYFNDRNLVKIQIAIAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK+ +DKRE K++D R R ++++ Sbjct: 124 GKQLHDKREDLKQKDMKRDIARAMKDY 150 >gi|297626163|ref|YP_003687926.1| SmpB SsrA-binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921928|emb|CBL56488.1| SmpB SsrA-binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K+++ N+KA ++Y I EAGIVLTGTEVKSLR + ++ D++AT +++E+WL N+ Sbjct: 5 KGEKMIARNKKALHDYSIGERLEAGIVLTGTEVKSLRDGRASLVDAFATIDDNEVWLRNA 64 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRD-GMTLVPMKIYFNAKGLAKIDL 127 IPEY NH R RKLLL ++EI RL A+ G TLVP+ IYF G AK+++ Sbjct: 65 NIPEYTLGTWRNHSAMRKRKLLLHRQEIKRLERALGDSGGRTLVPLSIYFKD-GNAKVEI 123 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+ GK+ +DKR+T ++RD +R+ R L + N Sbjct: 124 AVGTGKREWDKRQTIRERDMNREAERDLADRN 155 >gi|282859673|ref|ZP_06268775.1| SsrA-binding protein [Prevotella bivia JCVIHMP010] gi|282587591|gb|EFB92794.1| SsrA-binding protein [Prevotella bivia JCVIHMP010] Length = 159 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 98/159 (61%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS + + K +V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ D++ Sbjct: 1 MSNEKQNKKRKALVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDAFCVIN 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N EIW+ I Y + NH RR+RKLLL+K+EI L A + G T++P ++ + Sbjct: 61 NGEIWVQGMNISPYFYGSYANHEARRSRKLLLNKKEIRILEADSQSPGYTIIPTLVFIDD 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+GKK YDKR+T K ++ R+ R+ + + Sbjct: 121 NGRAKVNIALAKGKKEYDKRQTLKAKEDKREMDRVRKHY 159 >gi|332179695|gb|AEE15384.1| SsrA-binding protein [Thermodesulfobium narugense DSM 14796] Length = 148 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 70/140 (50%), Positives = 97/140 (69%), Gaps = 1/140 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + +NRKARY Y I+ + E GI L GTEVKSLR+ K + S SY E E+W+ + +I Y Sbjct: 7 IIENRKARYEYEILETLETGIELKGTEVKSLRLGKASFSGSYCQVERGELWIYDFHISPY 66 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 Q N FN P+R R+LL + EI RLY AV+R G+TL+P+K+Y+ +G+AK+ + LA+GK Sbjct: 67 EQGNIFNLDPKRKRRLLAHRSEILRLYNAVKRKGLTLIPLKLYWK-RGIAKVQVGLARGK 125 Query: 134 KNYDKRETEKKRDWDRQKHR 153 K YDKRET KKR +++ R Sbjct: 126 KLYDKRETIKKRTMEKESRR 145 >gi|327452383|gb|EGE99037.1| SsrA-binding protein [Propionibacterium acnes HL087PA3] Length = 160 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 +VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+T ++RD R+ R+L Sbjct: 125 VGTGKRDWDKRQTIRERDAKREAQRVLANR 154 >gi|163749581|ref|ZP_02156828.1| SsrA-binding protein [Shewanella benthica KT99] gi|161330691|gb|EDQ01628.1| SsrA-binding protein [Shewanella benthica KT99] Length = 165 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 52/145 (35%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY + E +L I Sbjct: 16 IARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFMRDGEAFLFGCTIAPL 75 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R+RKLLL ++E+ +L V R G ++VP+ +Y+ KI++ L +G Sbjct: 76 NTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKG 135 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRE K R+W +K R +++ Sbjct: 136 KKEHDKREDTKDREWQIEKSRTMKK 160 >gi|270290681|ref|ZP_06196905.1| SsrA-binding protein [Pediococcus acidilactici 7_4] gi|304386205|ref|ZP_07368538.1| SsrA-binding protein [Pediococcus acidilactici DSM 20284] gi|270280741|gb|EFA26575.1| SsrA-binding protein [Pediococcus acidilactici 7_4] gi|304327562|gb|EFL94789.1| SsrA-binding protein [Pediococcus acidilactici DSM 20284] Length = 155 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 101/158 (63%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ N+KAR++Y I+ + EAGI LTGTE+KS+R ++ + D + + Sbjct: 1 MAKKPQVKDQA--LAQNKKARHDYSILSTMEAGIALTGTEIKSVRERRITLRDGFVQIRH 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E L N I EYLQ N+FNH P RNRKLLL K+EI +L A + G+T+VP+K+Y Sbjct: 59 GEAILMNVQISEYLQGNQFNHDPLRNRKLLLHKKEIQKLQEASQNKGITIVPLKVYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ + +A+GK YDKRET KKRD R+ R L+ Sbjct: 118 GFAKVLIGVAKGKHEYDKRETLKKRDQQREIERALKNR 155 >gi|328950727|ref|YP_004368062.1| SsrA-binding protein [Marinithermus hydrothermalis DSM 14884] gi|328451051|gb|AEB11952.1| SsrA-binding protein [Marinithermus hydrothermalis DSM 14884] Length = 142 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 70/138 (50%), Positives = 99/138 (71%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 +NRKAR++Y I+ ++EAGI L GTEVKS+R KV+ + S+A F+ E+WL N +I Y + Sbjct: 3 ENRKARHDYEILETYEAGIALKGTEVKSIRAGKVDFTGSFARFDGGELWLENLFIAPYEK 62 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + NH PRR RKLLL K E++RL V + G+TLVP+KIYFN +G AK+ L LA+GKK Sbjct: 63 GSYTNHDPRRRRKLLLHKHELNRLRGRVEQRGLTLVPLKIYFNERGYAKLLLGLARGKKA 122 Query: 136 YDKRETEKKRDWDRQKHR 153 Y K+E +K+R +R+ + Sbjct: 123 YQKKEDDKRRAIEREMEK 140 >gi|291537515|emb|CBL10627.1| SsrA-binding protein [Roseburia intestinalis M50/1] Length = 155 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA +++ + +EAGI L GTEVKS+R+ K +I +++ EN Sbjct: 1 MAKTEK-----KLIANNKKAYHDFFLEERYEAGIELHGTEVKSMRMGKCSIKEAFIRIEN 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ + ++ Y + N FN P R +KLL+ K EI +L + G TLVP+++YF Sbjct: 56 GEVIIYGMHVSPYEKGNIFNRDPLRPKKLLMHKSEIRKLVGKIAEKGYTLVPVEVYFKGS 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+D+ALA+GKK YDKR+ K+D R+ R + N Sbjct: 116 -LVKVDIALAKGKKQYDKRQDIAKKDMRREAERDFKVKN 153 >gi|222152693|ref|YP_002561869.1| SsrA-binding protein [Streptococcus uberis 0140J] gi|254778383|sp|B9DTZ7|SSRP_STRU0 RecName: Full=SsrA-binding protein gi|222113505|emb|CAR41271.1| SsrA-binding protein [Streptococcus uberis 0140J] Length = 155 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +++ N+KA ++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 7 NLLAQNKKASHDYHIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLMNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI+ L ++ GMTL+P+K+Y G AKI L LA+ Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREINHLANELKGTGMTLIPLKVYLKD-GFAKILLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R+++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIKRVMKSIN 153 >gi|157374546|ref|YP_001473146.1| SsrA-binding protein [Shewanella sediminis HAW-EB3] gi|189046847|sp|A8FT45|SSRP_SHESH RecName: Full=SsrA-binding protein gi|157316920|gb|ABV36018.1| SsrA-binding protein [Shewanella sediminis HAW-EB3] Length = 164 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY + E +L I Sbjct: 16 IARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFMRDGEAFLFGCTIAPL 75 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R+RKLLL ++E+ +L V R G ++VP+ +Y+ KI++ L +G Sbjct: 76 NTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKG 135 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+ K R+W +K R +++ Sbjct: 136 KKEHDKRDDTKDREWQIEKARTMKK 160 >gi|85711975|ref|ZP_01043029.1| SmpB [Idiomarina baltica OS145] gi|85694161|gb|EAQ32105.1| SmpB [Idiomarina baltica OS145] Length = 159 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 95/158 (60%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + ++ N+KAR+ Y + FEAGI L G EVKS+R KVNI DSY +N Sbjct: 1 MSKK-KSQTNSSTIALNKKARHEYFLEEKFEAGISLQGWEVKSIREGKVNIRDSYVIMKN 59 Query: 61 DEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I Q ++ P R+RKLLL K+E+ +L A R+G +V +Y+ Sbjct: 60 GEAYLLGAEIQPLTQASSHVYCEPDRSRKLLLKKKELDKLIGASEREGFAVVATAMYWK- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K++ LA+GKK++DKR+T K+RDW RQK RIL+ Sbjct: 119 HCWVKLECYLAKGKKSHDKRDTVKERDWQRQKSRILKH 156 >gi|89901323|ref|YP_523794.1| SsrA-binding protein [Rhodoferax ferrireducens T118] gi|122478949|sp|Q21VE0|SSRP_RHOFD RecName: Full=SsrA-binding protein gi|89346060|gb|ABD70263.1| SsrA-binding protein [Rhodoferax ferrireducens T118] Length = 157 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 90/159 (56%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K ++DN+KA YNY FEAG+VL G EVKSLR KV I+D Y N Sbjct: 1 MAKKPDTASR---IADNKKAAYNYFFEERFEAGLVLEGWEVKSLREGKVQITDGYVVIRN 57 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+++ I + + +R +KLL+ K EI RL V + G TLVP+ +++ A Sbjct: 58 GELFVIGLQINPLGTASTHISPDKQRTKKLLMHKEEIKRLIGKVEQKGYTLVPLNLHWKA 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K ++ALA+GK +DKR+T K R+ R+ R ++ + Sbjct: 118 -GKIKCEIALAKGKAEHDKRDTIKDREGKREVERAMKTN 155 >gi|54307893|ref|YP_128913.1| SsrA-binding protein [Photobacterium profundum SS9] gi|90412542|ref|ZP_01220545.1| SsrA-binding protein [Photobacterium profundum 3TCK] gi|61216521|sp|Q6LUB4|SSRP_PHOPR RecName: Full=SsrA-binding protein gi|46912319|emb|CAG19111.1| putative small protein B,tmRNA-binding protein [Photobacterium profundum SS9] gi|90326579|gb|EAS42985.1| SsrA-binding protein [Photobacterium profundum 3TCK] Length = 158 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 2/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + N ++ NR AR+ + I +EAG+ L G EVK++R KVNI++SY + E Sbjct: 1 MAKKPNKSDNTIAKNRTARHEFAIQDDYEAGLQLQGWEVKAIRNGKVNIAESYVFLRDGE 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +++ I + P R RKLLL+++EI +L AV R+G T+V + +Y+ A Sbjct: 61 AFISGVTITPLNAASTHVVADPTRTRKLLLNRKEIDKLLGAVNREGQTIVALSMYWKAS- 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + A+GKK +DKR K RDW R K RI++ Sbjct: 120 WVKLKIGTARGKKLHDKRADSKSRDWARDKQRIMKH 155 >gi|313158959|gb|EFR58336.1| SsrA-binding protein [Alistipes sp. HGB5] Length = 164 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 98/151 (64%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + K + N++A ++Y I+ + AG+VL GTE+KS+R + +++DS+ F+ E+W+ Sbjct: 12 SEQKNINIRNKRATFDYEILEEYVAGVVLVGTEIKSIRAGRASLTDSFCYFDRGELWIRG 71 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I EY NH PRR+RKLLL++RE+ +L A + G+T+V ++++ N +GL KI + Sbjct: 72 VNIAEYAWGTCNNHTPRRDRKLLLNRRELDKLQRAGQDKGLTIVGLRMFLNERGLVKIVI 131 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+G+K YDKRE K+ D R+ + ++ + Sbjct: 132 GLARGRKTYDKREYLKENDAKREIDKAMKNY 162 >gi|157825715|ref|YP_001493435.1| SsrA-binding protein [Rickettsia akari str. Hartford] gi|166223444|sp|A8GNF2|SSRP_RICAH RecName: Full=SsrA-binding protein gi|157799673|gb|ABV74927.1| SsrA-binding protein [Rickettsia akari str. Hartford] Length = 152 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 101/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNNKAIFNYFIEERLEAGIVLNGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN + K++L +A Sbjct: 65 AEYEKANRFNHSTRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKQNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|225870905|ref|YP_002746852.1| SsrA-binding protein [Streptococcus equi subsp. equi 4047] gi|254778380|sp|C0MAA1|SSRP_STRE4 RecName: Full=SsrA-binding protein gi|225700309|emb|CAW94590.1| SsrA-binding protein [Streptococcus equi subsp. equi 4047] Length = 155 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 V++ ++KAR++YHIV + EAGIVLTGTE+KS+R +++ + D +A +N E WL N +I Sbjct: 7 NVLAQHKKARHDYHIVETVEAGIVLTGTEIKSVRAARIQLKDGFAQIKNGEAWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI L ++ GMTL+P+K+Y G AK+ + LA+ Sbjct: 67 PFEQGNIWNADPERTRKLLLKKREIQHLADELKGTGMTLIPLKVYLKD-GFAKVLIGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ DR R+++ N Sbjct: 126 GKHDYDKRESIKRREQDRDIRRVMKSVN 153 >gi|294787961|ref|ZP_06753205.1| SsrA-binding protein [Simonsiella muelleri ATCC 29453] gi|294484254|gb|EFG31937.1| SsrA-binding protein [Simonsiella muelleri ATCC 29453] Length = 148 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 95/145 (65%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NRKA ++Y I +AG+VL G EVK++R +V + +SY ++ D +L + +I Sbjct: 3 IANNRKAFHDYFIEEQIQAGLVLEGWEVKAIRAGRVQLKESYIYWKKDAFYLVSCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 +N P R RKLLL++REI++L R G T+VP+ ++F+ +G K+D+ LA+G Sbjct: 63 PTASNHVKPDPIRPRKLLLNQREINKLIGKTERAGYTIVPLNMHFH-RGKIKMDIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKRE+ K+ DW R+K R+++ Sbjct: 122 KKLHDKRESSKEADWKREKQRLMKH 146 >gi|229823087|ref|ZP_04449156.1| hypothetical protein GCWU000282_00382 [Catonella morbi ATCC 51271] gi|229787253|gb|EEP23367.1| hypothetical protein GCWU000282_00382 [Catonella morbi ATCC 51271] Length = 150 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 K ++ NRK R++Y I+ ++EAG+VLTGTE+KS+R K+N+ D + + + E WL Sbjct: 2 SQDKPLAQNRKVRHDYEILETYEAGMVLTGTEIKSIRKGKMNLKDGFISIRDGEAWLKQV 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y N FNH P R+RKLLL K+EI L+ V+++ MTLVP+K+Y +G AK+ Sbjct: 62 HISPYDHGNIFNHDPERDRKLLLHKKEIQTLHREVQQNRMTLVPLKVYL-VRGRAKLLFG 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK YDKR K + R R L+ Sbjct: 121 LARGKNKYDKRHALKDQQAKRDIDRALKIR 150 >gi|257413939|ref|ZP_04744728.2| SsrA-binding protein [Roseburia intestinalis L1-82] gi|257201785|gb|EEV00070.1| SsrA-binding protein [Roseburia intestinalis L1-82] Length = 156 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA +++ + +EAGI L GTEVKS+R+ K +I +++ EN Sbjct: 2 MAKTEK-----KLIANNKKAYHDFFLEERYEAGIELHGTEVKSMRMGKCSIKEAFIRIEN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ + ++ Y + N FN P R +KLL+ K EI +L + G TLVP+++YF Sbjct: 57 GEVIIYGMHVSPYEKGNIFNRDPLRPKKLLMHKSEIRKLVGKIAEKGYTLVPVEVYFKGS 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+D+ALA+GKK YDKR+ K+D R+ R + N Sbjct: 117 -LVKVDIALAKGKKQYDKRQDIAKKDMRREAERDFKVKN 154 >gi|269958423|ref|YP_003328210.1| SsrA-binding protein [Anaplasma centrale str. Israel] gi|269848252|gb|ACZ48896.1| SsrA-binding protein [Anaplasma centrale str. Israel] Length = 149 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 74/145 (51%), Positives = 109/145 (75%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 VV++NRKAR++Y +++ ++AG+VL G+EVKSLR KV++ D+Y ++ E+W+ N +I E Sbjct: 3 VVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVSMGDAYVLEKDMELWIHNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y +++R NH P R RKLLL KREIH++ ++ G+T+VP+ I+FN KG+AKI +A+ +G Sbjct: 63 YNRSDRKNHKPLRVRKLLLRKREIHKIAGNMKVSGLTVVPLMIFFNDKGIAKIKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K RDW R+K RI R Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147 >gi|313891271|ref|ZP_07824889.1| SsrA-binding protein [Streptococcus pseudoporcinus SPIN 20026] gi|313120338|gb|EFR43459.1| SsrA-binding protein [Streptococcus pseudoporcinus SPIN 20026] Length = 155 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 67/148 (45%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +++ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D +A +++E WL N +I Sbjct: 7 NLLAQNKKARHDYTIVETIEAGIVLTGTEIKSVRAARIQLKDGFAQIKHNEAWLVNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL KREI L ++ GMTL+P+K+Y G AK+ L LA+ Sbjct: 67 PFEQGNIWNQDPDRTRKLLLKKREIQHLGNELKGSGMTLIPLKVYLKD-GFAKVLLGLAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+++ DR R+++ N Sbjct: 126 GKHDYDKRESLKRKEQDRDIRRVMKSIN 153 >gi|302873638|ref|YP_003842271.1| SsrA-binding protein [Clostridium cellulovorans 743B] gi|307688181|ref|ZP_07630627.1| SsrA-binding protein [Clostridium cellulovorans 743B] gi|302576495|gb|ADL50507.1| SsrA-binding protein [Clostridium cellulovorans 743B] Length = 156 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 97/158 (61%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ N ++DNRKA ++Y I+ S+EAGI L GTEVKS+R + N+ DSY N Sbjct: 1 MAKTKEPN----TLADNRKAFHDYFIIESYEAGIELKGTEVKSIRNGRANLKDSYGEIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I Y Q N FN P R RKLLL K EI++L + + G +LVP+ +Y K Sbjct: 57 GELFVRNMHISPYEQGNIFNVNPLRERKLLLHKAEINKLNGFLTQQGYSLVPLSLYLK-K 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++A+ +GKKNYDKRE +R R+ + ++ Sbjct: 116 GRVKVNIAVVKGKKNYDKREAMLERTVKREIEKEFKDK 153 >gi|312885414|ref|ZP_07745055.1| SsrA-binding protein [Mucilaginibacter paludis DSM 18603] gi|311302112|gb|EFQ79140.1| SsrA-binding protein [Mucilaginibacter paludis DSM 18603] Length = 157 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 64/157 (40%), Positives = 101/157 (64%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + + + + N+KA + YHI+ +EAGI L GTE+KS+R K N++DS+ TF Sbjct: 1 MHQERKRTMSQDLYIKNKKAYFEYHILDKYEAGIKLLGTEIKSIREGKANLNDSFCTFIG 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I EY + +NH +R+R LLL K+E+ +L G+T+VP+ ++ NA+ Sbjct: 61 TELYVRNLHIAEYSHGSFYNHEQKRDRVLLLHKKELRKLQTRSEEKGLTIVPLAMFVNAR 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G AK+++ LAQGKK +DKRET K+RD + R L+ Sbjct: 121 GFAKLEIGLAQGKKTFDKRETMKERDSKIEMDRALKR 157 >gi|70727105|ref|YP_254019.1| SsrA-binding protein [Staphylococcus haemolyticus JCSC1435] gi|123659647|sp|Q4L4L2|SSRP_STAHJ RecName: Full=SsrA-binding protein gi|68447829|dbj|BAE05413.1| ssrA-binding protein [Staphylococcus haemolyticus JCSC1435] Length = 156 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA + Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEDTIEAGIALKGTEIKSIRRGSANLKDSYAQVKR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N +I Y + NRFNH P R+RKLLL K+EI +L R G +L+P+K+Y Sbjct: 59 GEMFINNMHIAPYEEGNRFNHDPLRSRKLLLHKKEIIKLGERTREIGYSLIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKK +DKR+ K + R R +++ Sbjct: 118 GQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKDR 155 >gi|300361309|ref|ZP_07057486.1| SsrA-binding protein [Lactobacillus gasseri JV-V03] gi|300353928|gb|EFJ69799.1| SsrA-binding protein [Lactobacillus gasseri JV-V03] Length = 151 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 69/151 (45%), Positives = 100/151 (66%), Gaps = 4/151 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N Sbjct: 1 MKQKAD---NLIAQNKKANHDYFIKDTLEAGIALTGTEIKSVRARRINLRDGYVQIINGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL KREI RL + GMT++P+K+Y G Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKREIARLAGIQAQQGMTIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ + + QGKK YDKR+T KKRD DR+ HR Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147 >gi|314933093|ref|ZP_07840459.1| SsrA-binding protein [Staphylococcus caprae C87] gi|313654412|gb|EFS18168.1| SsrA-binding protein [Staphylococcus caprae C87] Length = 156 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K +P +++NRKAR++Y+I + EAGI L GTE+KS+R N+ DSYA + Sbjct: 1 MAKKKTKSPG--TLAENRKARHDYNIEATVEAGIALQGTEIKSIRSGSANLKDSYAQVKR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + NRFNH P R+RKLLL KREI +L R G +L+P+K+Y Sbjct: 59 GEMYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGERTREIGYSLIPLKLYLK-H 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+ L +A+GKK +DKR+ K + R R ++ Sbjct: 118 GQCKVLLGVARGKKIHDKRQALKDKAMKRDVDRAIKAR 155 >gi|307721683|ref|YP_003892823.1| SsrA-binding protein [Sulfurimonas autotrophica DSM 16294] gi|306979776|gb|ADN09811.1| SsrA-binding protein [Sulfurimonas autotrophica DSM 16294] Length = 150 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 58/147 (39%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA ++Y I FEAG+VL+G+EVK +R +VN+ DS+ F N E +L N++I Sbjct: 4 TIAKNKKAYHDYFIEEKFEAGLVLSGSEVKGIRAHRVNLKDSFIRFVNGEAFLFNAHIGR 63 Query: 73 YLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + + + R +RKLLL K+E+ ++ AV RDG T+VP+++YFN + +AK+ +A+A+ Sbjct: 64 LETTHHYYGHEERGSRKLLLHKKELQKMQKAVTRDGYTIVPLQLYFNKRNIAKLQIAIAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK +DKR K++D R R ++++ Sbjct: 124 GKLLHDKRNDLKEKDQKRDIQRAMKDY 150 >gi|306819857|ref|ZP_07453511.1| SsrA-binding protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552104|gb|EFM40041.1| SsrA-binding protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 153 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 72/150 (48%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K V+ NRKA YNY I FEAGI L GTEVKS+R K+NI+D YA+ +N E L + Sbjct: 2 GIKTVAKNRKASYNYDIKERFEAGIQLKGTEVKSIRKGKINITDGYASIDNGECLLKQVH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y Q N FN P R RKLLL K+EI+ L + G +L+P+ +YF G K+++ L Sbjct: 62 ISPYEQGNIFNVDPMRVRKLLLHKKEINYLLGQTMQKGFSLIPLSVYFKD-GKVKVEIGL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 QGKKNYDKR KR+ D + R ++E N Sbjct: 121 CQGKKNYDKRHDIAKRESDIRIKRAIKEFN 150 >gi|189460375|ref|ZP_03009160.1| hypothetical protein BACCOP_01012 [Bacteroides coprocola DSM 17136] gi|189432927|gb|EDV01912.1| hypothetical protein BACCOP_01012 [Bacteroides coprocola DSM 17136] Length = 152 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 63/152 (41%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + N + N++A ++Y V ++ AGIVLTGTE+KS+R K ++ D++ F E+W+ Sbjct: 2 KTNAG-NINIKNKRASFDYEFVDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWV 60 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY + NH RR+RKLLL+K+E+ +L G T+VP ++Y N KGLAK+ Sbjct: 61 KNMHIAEYFYGSYNNHSARRDRKLLLTKKELRKLERTSAEPGFTIVPTRLYINEKGLAKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +ALA+GKK YDKR+T K+++ R R+ + Sbjct: 121 VIALAKGKKQYDKRQTLKEKEDKRMMDRMFKR 152 >gi|225620957|ref|YP_002722215.1| SsrA-binding protein [Brachyspira hyodysenteriae WA1] gi|225215777|gb|ACN84511.1| SsrA-binding protein [Brachyspira hyodysenteriae WA1] Length = 161 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 77/162 (47%), Positives = 108/162 (66%), Gaps = 6/162 (3%) Query: 1 MSLKSRGNPPKKVVS-----DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSY 55 M+ K +S N+KA +NY +V FEAGIVL GTEVKSLR VN+SDSY Sbjct: 1 MASKKDKKSGSNTISSGEIVKNKKALFNYELVEKFEAGIVLLGTEVKSLRERSVNMSDSY 60 Query: 56 ATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115 A+F+ E+++ N +I Y NR NH P R RKLL+ KRE+ RLY ++ G+TL+P+K+ Sbjct: 61 ASFKKGELFIVNMHISPYHFGNRNNHEPLRERKLLMKKRELRRLYGKIKEQGLTLIPVKL 120 Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 YF+ +G K++LALA+GKK +DKRET K++ DR+ R ++ Sbjct: 121 YFS-RGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIKR 161 >gi|261879494|ref|ZP_06005921.1| SsrA-binding protein [Prevotella bergensis DSM 17361] gi|270333866|gb|EFA44652.1| SsrA-binding protein [Prevotella bergensis DSM 17361] Length = 159 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 98/159 (61%), Gaps = 1/159 (0%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ KS V N+KA + Y+ + ++ AGIVLTGTE+KS+R+ K ++ D++ Sbjct: 1 MNKDKSGTRKKNSVQIRNKKASFEYYFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYIN 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N EIW+ + Y + NH +R+RKLLL+K+EI L + G T+VP ++ + Sbjct: 61 NGEIWVKGMNVSPYFYGSYSNHEAKRDRKLLLTKKEIRTLTEDTKAPGFTIVPTLMFIDD 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+++ALA+GKK +DKR+T K+++ R+ R ++ + Sbjct: 121 NGRAKVNIALARGKKEFDKRQTIKEKEDRREMDRAMKRY 159 >gi|291286218|ref|YP_003503034.1| SsrA-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290883378|gb|ADD67078.1| SsrA-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 147 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 106/145 (73%), Gaps = 1/145 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV + N+KA ++Y I+ +FE G+ LTGTEVKS++ S+V++ +++ +E++L NS++P Sbjct: 2 KVFAKNKKAFFDYEILETFETGVQLTGTEVKSIKDSRVSLKEAFVKVIGNEVFLVNSHVP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EYLQ NR NH P R+RKLL+ +++I RL ++ G+TLVP+KIY + L K+++ALA+ Sbjct: 62 EYLQGNRNNHVPTRSRKLLMRRKQIDRLIGKIKEAGLTLVPLKIYQKDR-LIKLEIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKR+ K+RD R+ R L+ Sbjct: 121 GKKTHDKRQVLKERDLQREMGRELK 145 >gi|34540318|ref|NP_904797.1| SsrA-binding protein [Porphyromonas gingivalis W83] gi|39932260|sp|Q7MWT5|SSRP_PORGI RecName: Full=SsrA-binding protein gi|34396630|gb|AAQ65696.1| SsrA-binding protein [Porphyromonas gingivalis W83] Length = 153 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 99/152 (65%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + K ++ N++A ++Y I+ + AGIVL GTE+KSLR+ K + D+Y F E+W+ Sbjct: 2 KEKIQKNILIKNKRATFDYEILDVYTAGIVLVGTEIKSLRLGKGGLVDTYCYFHRGELWV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N YI EY NH RR+RKLLL+++E+ +L A + G T+VP+K++ N +GLAK+ Sbjct: 62 KNMYIAEYFYGTYNNHVARRDRKLLLNRKELRKLEEASKSMGTTIVPLKLFINERGLAKL 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + LA+GKK YDKR + K+RD R+ R L+ Sbjct: 122 QIGLARGKKQYDKRASIKERDDRREMDRALKR 153 >gi|291540044|emb|CBL13155.1| SsrA-binding protein [Roseburia intestinalis XB6B4] Length = 156 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 97/159 (61%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + K++++N+KA +++ + +EAGI L GTEVKS+R+ K +I +++ EN Sbjct: 2 MAKTEK-----KLIANNKKAYHDFFLEERYEAGIELHGTEVKSMRMGKCSIKEAFIRIEN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ + ++ Y + N FN P R +KLL+ K EI +L + G TLVP+++YF Sbjct: 57 GEVIIYGMHVSPYEKGNIFNRDPLRPKKLLMHKSEIRKLIGKIAEKGYTLVPVEVYFKGS 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K+D+ALA+GKK YDKR+ K+D R+ R + N Sbjct: 117 -LVKVDIALAKGKKQYDKRQDIAKKDMRREAERDFKVKN 154 >gi|229825462|ref|ZP_04451531.1| hypothetical protein GCWU000182_00822 [Abiotrophia defectiva ATCC 49176] gi|229790025|gb|EEP26139.1| hypothetical protein GCWU000182_00822 [Abiotrophia defectiva ATCC 49176] Length = 156 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 95/154 (61%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWL 65 K+V+ N+KA ++Y I +E GI L GTEVKS+R+ KV+I +SY +N E+ + Sbjct: 2 SKDNYKLVAQNKKATFDYFIEERYETGITLVGTEVKSVRMGKVSIKESYVQVDKNGEVII 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 +I Y + N FN P R RKLL+ + EI++L V+ G TLVP+K+Y L K+ Sbjct: 62 IGMHISPYEKGNIFNKDPLRTRKLLMHRAEINKLVGKVKTAGYTLVPLKVYLKGS-LVKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ++ LA+GKKNYDKR+ +K+D R+ R + N Sbjct: 121 EIGLARGKKNYDKRQDIQKKDQRREAERDYKVKN 154 >gi|260592458|ref|ZP_05857916.1| SsrA-binding protein [Prevotella veroralis F0319] gi|260535504|gb|EEX18121.1| SsrA-binding protein [Prevotella veroralis F0319] Length = 159 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/144 (41%), Positives = 89/144 (61%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA + Y V +F AGIVLTGTE+KS+R K ++ DS+ E+W+ I Y Sbjct: 16 IRNKKASFEYFFVDTFTAGIVLTGTEIKSIRAGKASLVDSFCYINKGEMWVQGMNISPYF 75 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + NH +R RKLLL+K+EI L A + G T++P I+ + G AK+D+ALA+GKK Sbjct: 76 YGSYANHEAKRPRKLLLTKKEIRNLEAESKTPGFTIIPTLIFIDGNGRAKVDIALAKGKK 135 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKR+T K+++ R+ R + + Sbjct: 136 EYDKRQTLKEKEDRREMDRARKHY 159 >gi|50842835|ref|YP_056062.1| SsrA-binding protein [Propionibacterium acnes KPA171202] gi|289425235|ref|ZP_06427012.1| SsrA-binding protein [Propionibacterium acnes SK187] gi|289426938|ref|ZP_06428662.1| SsrA-binding protein [Propionibacterium acnes J165] gi|295130887|ref|YP_003581550.1| SsrA-binding protein [Propionibacterium acnes SK137] gi|61216486|sp|Q6A811|SSRP_PROAC RecName: Full=SsrA-binding protein gi|50840437|gb|AAT83104.1| SsrA-binding protein [Propionibacterium acnes KPA171202] gi|289154213|gb|EFD02901.1| SsrA-binding protein [Propionibacterium acnes SK187] gi|289159878|gb|EFD08058.1| SsrA-binding protein [Propionibacterium acnes J165] gi|291376895|gb|ADE00750.1| SsrA-binding protein [Propionibacterium acnes SK137] gi|313771876|gb|EFS37842.1| SsrA-binding protein [Propionibacterium acnes HL074PA1] gi|313807109|gb|EFS45604.1| SsrA-binding protein [Propionibacterium acnes HL087PA2] gi|313819305|gb|EFS57019.1| SsrA-binding protein [Propionibacterium acnes HL046PA2] gi|313819954|gb|EFS57668.1| SsrA-binding protein [Propionibacterium acnes HL036PA1] gi|313823253|gb|EFS60967.1| SsrA-binding protein [Propionibacterium acnes HL036PA2] gi|313824959|gb|EFS62673.1| SsrA-binding protein [Propionibacterium acnes HL063PA1] gi|313829920|gb|EFS67634.1| SsrA-binding protein [Propionibacterium acnes HL007PA1] gi|313833075|gb|EFS70789.1| SsrA-binding protein [Propionibacterium acnes HL056PA1] gi|314924793|gb|EFS88624.1| SsrA-binding protein [Propionibacterium acnes HL036PA3] gi|314960649|gb|EFT04751.1| SsrA-binding protein [Propionibacterium acnes HL002PA2] gi|314972911|gb|EFT17008.1| SsrA-binding protein [Propionibacterium acnes HL053PA1] gi|314975665|gb|EFT19760.1| SsrA-binding protein [Propionibacterium acnes HL045PA1] gi|314978049|gb|EFT22143.1| SsrA-binding protein [Propionibacterium acnes HL072PA2] gi|314984151|gb|EFT28243.1| SsrA-binding protein [Propionibacterium acnes HL005PA1] gi|314986210|gb|EFT30302.1| SsrA-binding protein [Propionibacterium acnes HL005PA2] gi|314989574|gb|EFT33665.1| SsrA-binding protein [Propionibacterium acnes HL005PA3] gi|315080947|gb|EFT52923.1| SsrA-binding protein [Propionibacterium acnes HL078PA1] gi|315084870|gb|EFT56846.1| SsrA-binding protein [Propionibacterium acnes HL027PA2] gi|315086043|gb|EFT58019.1| SsrA-binding protein [Propionibacterium acnes HL002PA3] gi|315088238|gb|EFT60214.1| SsrA-binding protein [Propionibacterium acnes HL072PA1] gi|315095724|gb|EFT67700.1| SsrA-binding protein [Propionibacterium acnes HL038PA1] gi|315105994|gb|EFT77970.1| SsrA-binding protein [Propionibacterium acnes HL030PA1] gi|327327938|gb|EGE69712.1| SsrA-binding protein [Propionibacterium acnes HL096PA3] gi|327330075|gb|EGE71828.1| SsrA-binding protein [Propionibacterium acnes HL096PA2] gi|327442690|gb|EGE89344.1| SsrA-binding protein [Propionibacterium acnes HL043PA1] gi|327443911|gb|EGE90565.1| SsrA-binding protein [Propionibacterium acnes HL043PA2] gi|327443979|gb|EGE90633.1| SsrA-binding protein [Propionibacterium acnes HL013PA2] gi|328754959|gb|EGF68575.1| SsrA-binding protein [Propionibacterium acnes HL020PA1] gi|328761403|gb|EGF74929.1| SsrA-binding protein [Propionibacterium acnes HL099PA1] Length = 160 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 +VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154 >gi|331004354|ref|ZP_08327828.1| SsrA-binding protein [Lachnospiraceae oral taxon 107 str. F0167] gi|330411158|gb|EGG90575.1| SsrA-binding protein [Lachnospiraceae oral taxon 107 str. F0167] Length = 153 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K++++N+KA ++Y I+ ++E GI L+GTEVKS+R+ V+I +S+ E E+++ + Sbjct: 4 GIKIIANNKKAYFDYFILENYETGIELSGTEVKSVRMGHVSIKESWIRIEKGELFIMGMH 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y + N FN P R RKLL+ K+EI +L + G+T+VP+K+Y L K+++ L Sbjct: 64 INPYEKGNIFNKDPLRVRKLLMHKKEILKLDGKLNEKGLTIVPLKVYLKGS-LVKVEIGL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GKKNYDKRET K+ R+ + ++ Sbjct: 123 AKGKKNYDKRETLAKKTQQREIEKAMKR 150 >gi|314967090|gb|EFT11189.1| SsrA-binding protein [Propionibacterium acnes HL082PA2] gi|315092705|gb|EFT64681.1| SsrA-binding protein [Propionibacterium acnes HL060PA1] gi|315103822|gb|EFT75798.1| SsrA-binding protein [Propionibacterium acnes HL050PA2] gi|327327224|gb|EGE69000.1| SsrA-binding protein [Propionibacterium acnes HL103PA1] Length = 160 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 KVV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVKVVARNRRAAHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154 >gi|329947412|ref|ZP_08294616.1| SsrA-binding protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328525162|gb|EGF52213.1| SsrA-binding protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 187 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 96/147 (65%), Gaps = 2/147 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND- 61 + K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ + Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIEIDRYG 77 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL ++IPEYLQ NH PRR RKLLL + E+ RL VR G T+VP+++YF G Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLEGRVRAKGYTVVPLELYFIG-G 136 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148 AK+++ALA+GK+++DKR+ ++ Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163 >gi|315608008|ref|ZP_07883001.1| SsrA-binding protein [Prevotella buccae ATCC 33574] gi|315250477|gb|EFU30473.1| SsrA-binding protein [Prevotella buccae ATCC 33574] Length = 159 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 95/146 (65%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N+KA + Y + ++ AGIVLTGTE+KS+R + ++ D++ N E+WL I Sbjct: 14 IQIRNKKASFEYAFLDTYTAGIVLTGTEIKSIRQGRASLVDTFCFIHNGEMWLKGMNISP 73 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH +R+RKLLL+KREIH+L A ++ G T+VP ++ + G AK+D+ALA+G Sbjct: 74 YFYGSFSNHEAKRDRKLLLNKREIHKLQEATKQVGFTIVPTLVFIDDHGRAKVDIALARG 133 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR+T ++++ R+ R ++ Sbjct: 134 KKEFDKRQTIREKEDKREMERAIKRF 159 >gi|313809601|gb|EFS47337.1| SsrA-binding protein [Propionibacterium acnes HL083PA1] Length = 160 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 +VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGELWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154 >gi|239636604|ref|ZP_04677606.1| SsrA-binding protein [Staphylococcus warneri L37603] gi|239597959|gb|EEQ80454.1| SsrA-binding protein [Staphylococcus warneri L37603] Length = 154 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIFKLGDRTREIGYSIIPLKLYLK-HGQ 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGIARGKKKYDKRQALKEKAVKRDMDRAVKAR 153 >gi|254517086|ref|ZP_05129144.1| SsrA-binding protein [gamma proteobacterium NOR5-3] gi|219674591|gb|EED30959.1| SsrA-binding protein [gamma proteobacterium NOR5-3] Length = 160 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 95/145 (65%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N++AR++YH++ SFEAG+VLTG EVK+LR K ++DSY ++ E +L + I Sbjct: 13 IVQNKRARFDYHLLESFEAGVVLTGWEVKALRAGKAQLTDSYVLMKDGEAFLLGTQITPL 72 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + P R RKLLL++RE+ R+ AAV G T V K+Y+ L K D+ALAQG Sbjct: 73 ATASTHYIPDPTRTRKLLLNRRELARILAAVSAKGQTCVCTKLYWKGH-LVKADIALAQG 131 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 K+ +DKR T+K R+W QK RI+R+ Sbjct: 132 KQAHDKRATQKDREWGVQKQRIMRD 156 >gi|190570927|ref|YP_001975285.1| SsrA-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019443|ref|ZP_03335249.1| SsrA-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238064647|sp|B3CPW2|SSRP_WOLPP RecName: Full=SsrA-binding protein gi|190357199|emb|CAQ54615.1| SsrA-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212994865|gb|EEB55507.1| SsrA-binding protein [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 149 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 77/146 (52%), Positives = 108/146 (73%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V+++NRKAR+ Y I+ FEAG++L +EVKSLR K NISD+Y T + EIWL N +I E Sbjct: 3 VIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHIAE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y AN+ NH P+R RKLLL K+EI++L ++ G+T+VP+ IYFN KGLAK +A+ +G Sbjct: 63 YKAANQKNHKPKRERKLLLHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR T K+R+W+R+K R+ + + Sbjct: 123 KKLYDKRATIKQREWEREKSRLSKNN 148 >gi|51244374|ref|YP_064258.1| SsrA-binding protein [Desulfotalea psychrophila LSv54] gi|61216494|sp|Q6AQX3|SSRP_DESPS RecName: Full=SsrA-binding protein gi|50875411|emb|CAG35251.1| probable SsrA-binding protein [Desulfotalea psychrophila LSv54] Length = 151 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 92/149 (61%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWLTNS 68 K+V N+KA + Y I+ ++EAG+VL+G EVKSLR + N+ D + E L N Sbjct: 2 GIKIVCKNKKAYHEYEILDTYEAGMVLSGPEVKSLRGGRGNLVDGHVAINARGEAMLYNV 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y+ + P R RKLLL KRE+H+L ++ G+ L+P+KIYF G AKI+L Sbjct: 62 HISHYMFTSHNPVEPLRVRKLLLHKRELHKLNGKLKEKGLALIPLKIYFIENGKAKIELG 121 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GKK YDKR T K++ R+ R++R Sbjct: 122 LAKGKKMYDKRATLKEQQGKRELARVMRR 150 >gi|223982918|ref|ZP_03633131.1| hypothetical protein HOLDEFILI_00405 [Holdemania filiformis DSM 12042] gi|223965117|gb|EEF69416.1| hypothetical protein HOLDEFILI_00405 [Holdemania filiformis DSM 12042] Length = 151 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K+++ NRKA ++Y + FEAG+VLTGTE+KS+R K D+Y +F + E W+ Sbjct: 2 SGEKIIAVNRKASHDYSLEERFEAGLVLTGTEIKSIRQGKAQFKDAYVSFISGEAWIKEM 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y N+FNH R RKLLL K EI +L V+ G T+VP+K+Y G AK+++A Sbjct: 62 HIAAYDHGNQFNHDETRERKLLLHKLEIVKLQQKVKLKGYTVVPVKLYLK-NGRAKMEIA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK YDKRE K +D R+ + ++ Sbjct: 121 LAKGKALYDKREDAKMKDAKREMEKAMKAR 150 >gi|325479271|gb|EGC82367.1| SsrA-binding protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 148 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA ++Y I +EAG+ L G+EVKS++ KV+I +S+ + N E+++ ++ Sbjct: 2 KLLANNKKAYHDYFIEEKYEAGLSLLGSEVKSIKKGKVSIKESFISDRNGEMFIYGMHVT 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y QA + P R R+LLL K+EI++L + G T+VP+KIY GL K++LALA+ Sbjct: 62 PYEQAYEKDIDPTRTRRLLLHKKEINKLIGQKTQAGFTIVPLKIYERD-GLVKLELALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRE+ K +D R+ R L+ + Sbjct: 121 GKKQFDKRESIKAKDDKRKIDRALKNY 147 >gi|94500145|ref|ZP_01306679.1| SsrA-binding protein [Oceanobacter sp. RED65] gi|94427718|gb|EAT12694.1| SsrA-binding protein [Oceanobacter sp. RED65] Length = 161 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 3/160 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M K + + N++AR++YH+ EAG+ L G EVKS+R KV ++DSY Sbjct: 1 MGKTKKKPKNTSSTICSNKRARHDYHLDNLTEAGLALEGWEVKSIREGKVQLTDSYVIIH 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 +E WLT I + P+R+RKLL+ ++EI R A + G TL+ +++Y+ Sbjct: 61 RNEAWLTGCNITPLNTASTHVVCTPKRDRKLLMHRKEIDRFAAMADQKGYTLIALELYWK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K +AL +GK+ +DKRET K+RDWD+QK RI++ + Sbjct: 121 GPN-VKCKIALGKGKQAHDKRETSKQRDWDKQKERIMKNN 159 >gi|121635197|ref|YP_975442.1| SsrA-binding protein [Neisseria meningitidis FAM18] gi|218768508|ref|YP_002343020.1| SsrA-binding protein [Neisseria meningitidis Z2491] gi|261400712|ref|ZP_05986837.1| SsrA-binding protein [Neisseria lactamica ATCC 23970] gi|304387066|ref|ZP_07369318.1| SsrA-binding protein [Neisseria meningitidis ATCC 13091] gi|11279405|pir||A81869 small protein B homolog NMA1726 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) gi|120866903|emb|CAM10662.1| small protein B homolog [Neisseria meningitidis FAM18] gi|121052516|emb|CAM08855.1| small protein B homolog [Neisseria meningitidis Z2491] gi|269209471|gb|EEZ75926.1| SsrA-binding protein [Neisseria lactamica ATCC 23970] gi|304338865|gb|EFM04967.1| SsrA-binding protein [Neisseria meningitidis ATCC 13091] gi|325128599|gb|EGC51469.1| SsrA-binding protein [Neisseria meningitidis N1568] gi|325130575|gb|EGC53322.1| SsrA-binding protein [Neisseria meningitidis OX99.30304] gi|325132658|gb|EGC55343.1| SsrA-binding protein [Neisseria meningitidis M6190] gi|325134658|gb|EGC57298.1| SsrA-binding protein [Neisseria meningitidis M13399] gi|325136581|gb|EGC59182.1| SsrA-binding protein [Neisseria meningitidis M0579] gi|325138546|gb|EGC61109.1| SsrA-binding protein [Neisseria meningitidis ES14902] gi|325140685|gb|EGC63201.1| SsrA-binding protein [Neisseria meningitidis CU385] gi|325142694|gb|EGC65074.1| SsrA-binding protein [Neisseria meningitidis 961-5945] gi|325144784|gb|EGC67075.1| SsrA-binding protein [Neisseria meningitidis M01-240013] gi|325205726|gb|ADZ01179.1| SsrA-binding protein [Neisseria meningitidis M04-240196] gi|325208464|gb|ADZ03916.1| SsrA-binding protein [Neisseria meningitidis NZ-05/33] Length = 150 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I Sbjct: 5 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 64 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL++ EI++L R G T+VP+ ++F+ +G K+++ LA+G Sbjct: 65 PTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 123 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 124 KKQHDKRQSMKEADWKREKQRLIKH 148 >gi|325963887|ref|YP_004241793.1| SsrA-binding protein [Arthrobacter phenanthrenivorans Sphe3] gi|323469974|gb|ADX73659.1| SsrA-binding protein [Arthrobacter phenanthrenivorans Sphe3] Length = 149 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 63/139 (45%), Positives = 97/139 (69%), Gaps = 1/139 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NRKAR++YH++ ++EAGI L GTEVKSLR ++ D + TF NDE+W+ +IPEY Sbjct: 2 VATNRKARHDYHVLDTYEAGIALMGTEVKSLREGHASMVDGFCTFYNDELWMEAIHIPEY 61 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 Q + NH RR RKLLL + E+ ++ VR G T+VP+++YF G AK+++ +A+GK Sbjct: 62 NQGSWTNHAARRRRKLLLHREELIKISHKVRESGYTIVPLQLYFVD-GKAKVEIGVARGK 120 Query: 134 KNYDKRETEKKRDWDRQKH 152 + YDKR+T +++ +R+ Sbjct: 121 REYDKRQTLREQQDNREAQ 139 >gi|189500736|ref|YP_001960206.1| SsrA-binding protein [Chlorobium phaeobacteroides BS1] gi|189496177|gb|ACE04725.1| SsrA-binding protein [Chlorobium phaeobacteroides BS1] Length = 157 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 100/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + P + NRKAR+ Y I+ + AGI L G+EVKS+R+ K ++++SYA Sbjct: 1 MAKAEK-KPQYVSTTLNRKARHEYFILDTMVAGIELKGSEVKSVRLGKASLNESYAIIHR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N I Y + P+R+RKLLL + EI +L + + G+TLVP+K +FN K Sbjct: 60 GEVWLENMQIAAYEHNHVEPIDPKRSRKLLLKREEILKLQTRLHQKGLTLVPLKAFFNKK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G+ KI+L LA+GK+ +DKRET K+RD RQ ++ ++ Sbjct: 120 GVLKIELGLAKGKQLHDKRETIKERDTQRQLQKLKNQY 157 >gi|302346527|ref|YP_003814825.1| SsrA-binding protein [Prevotella melaninogenica ATCC 25845] gi|302150434|gb|ADK96695.1| SsrA-binding protein [Prevotella melaninogenica ATCC 25845] Length = 159 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + + K + N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DSY Sbjct: 1 MNKEQQEKRKKSPIQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDSYCYIT 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH +R RKLLL+++EI L A + G T++P I+ + Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEAKRPRKLLLNRKEIRNLEADSKTPGFTIIPTLIFIDE 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK YDKR+T K+++ R+ R + + Sbjct: 121 NGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRAKKHY 159 >gi|228478158|ref|ZP_04062766.1| SsrA-binding protein [Streptococcus salivarius SK126] gi|312863356|ref|ZP_07723594.1| SsrA-binding protein [Streptococcus vestibularis F0396] gi|228249837|gb|EEK09107.1| SsrA-binding protein [Streptococcus salivarius SK126] gi|311100892|gb|EFQ59097.1| SsrA-binding protein [Streptococcus vestibularis F0396] Length = 154 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQDPDRTRKLLLKKKQITKLQNDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R RI++ N Sbjct: 126 GKHDYDKRESIKRREQERDIKRIIKSVN 153 >gi|313764093|gb|EFS35457.1| SsrA-binding protein [Propionibacterium acnes HL013PA1] gi|313813324|gb|EFS51038.1| SsrA-binding protein [Propionibacterium acnes HL025PA1] gi|313816442|gb|EFS54156.1| SsrA-binding protein [Propionibacterium acnes HL059PA1] gi|313827259|gb|EFS64973.1| SsrA-binding protein [Propionibacterium acnes HL063PA2] gi|314914954|gb|EFS78785.1| SsrA-binding protein [Propionibacterium acnes HL005PA4] gi|314917821|gb|EFS81652.1| SsrA-binding protein [Propionibacterium acnes HL050PA1] gi|314919711|gb|EFS83542.1| SsrA-binding protein [Propionibacterium acnes HL050PA3] gi|314930046|gb|EFS93877.1| SsrA-binding protein [Propionibacterium acnes HL067PA1] gi|314956375|gb|EFT00687.1| SsrA-binding protein [Propionibacterium acnes HL027PA1] gi|314957247|gb|EFT01350.1| SsrA-binding protein [Propionibacterium acnes HL002PA1] gi|314967696|gb|EFT11795.1| SsrA-binding protein [Propionibacterium acnes HL037PA1] gi|315098167|gb|EFT70143.1| SsrA-binding protein [Propionibacterium acnes HL059PA2] gi|315101680|gb|EFT73656.1| SsrA-binding protein [Propionibacterium acnes HL046PA1] gi|315109499|gb|EFT81475.1| SsrA-binding protein [Propionibacterium acnes HL030PA2] gi|327329962|gb|EGE71716.1| SsrA-binding protein [Propionibacterium acnes HL097PA1] gi|327452740|gb|EGE99394.1| SsrA-binding protein [Propionibacterium acnes HL083PA2] gi|328752607|gb|EGF66223.1| SsrA-binding protein [Propionibacterium acnes HL025PA2] gi|328753840|gb|EGF67456.1| SsrA-binding protein [Propionibacterium acnes HL087PA1] Length = 160 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 97/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 +VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R+L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRVLANR 154 >gi|15677378|ref|NP_274533.1| SsrA-binding protein [Neisseria meningitidis MC58] gi|161870386|ref|YP_001599558.1| SsrA-binding protein [Neisseria meningitidis 053442] gi|254805292|ref|YP_003083513.1| tmRNA-binding protein SmpB [Neisseria meningitidis alpha14] gi|60415933|sp|P0A0Y7|SSRP_NEIMA RecName: Full=SsrA-binding protein gi|60415934|sp|P0A0Y8|SSRP_NEIMB RecName: Full=SsrA-binding protein gi|187611502|sp|A1KUW3|SSRP_NEIMF RecName: Full=SsrA-binding protein gi|189046835|sp|A9M0W1|SSRP_NEIM0 RecName: Full=SsrA-binding protein gi|7226770|gb|AAF41881.1| small major protein B [Neisseria meningitidis MC58] gi|161595939|gb|ABX73599.1| small protein B [Neisseria meningitidis 053442] gi|254668834|emb|CBA06867.1| tmRNA-binding protein SmpB [Neisseria meningitidis alpha14] gi|254670703|emb|CBA06856.1| SsrA-binding protein [Neisseria meningitidis alpha153] gi|261392228|emb|CAX49746.1| SsrA-binding protein [Neisseria meningitidis 8013] gi|308389670|gb|ADO31990.1| small protein B-like protein [Neisseria meningitidis alpha710] gi|309378725|emb|CBX22675.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|316986010|gb|EFV64947.1| ssrA-binding protein [Neisseria meningitidis H44/76] gi|319410756|emb|CBY91139.1| SsrA-binding protein [Neisseria meningitidis WUE 2594] gi|325198647|gb|ADY94103.1| SsrA-binding protein [Neisseria meningitidis G2136] gi|325199872|gb|ADY95327.1| SsrA-binding protein [Neisseria meningitidis H44/76] gi|325201784|gb|ADY97238.1| SsrA-binding protein [Neisseria meningitidis M01-240149] gi|325204503|gb|ADY99956.1| SsrA-binding protein [Neisseria meningitidis M01-240355] Length = 148 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL++ EI++L R G T+VP+ ++F+ +G K+++ LA+G Sbjct: 63 PTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146 >gi|288802427|ref|ZP_06407866.1| SsrA-binding protein [Prevotella melaninogenica D18] gi|288334955|gb|EFC73391.1| SsrA-binding protein [Prevotella melaninogenica D18] Length = 159 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVV-SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ + + K V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DSY Sbjct: 1 MNKEQQEKRKKSPVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDSYCYIT 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH +R RKLLL+++EI L + + G T++P I+ + Sbjct: 61 KGEMWVQGMNISPYFYGSYANHEAKRPRKLLLTRKEIRNLESESKTPGFTIIPTLIFIDE 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK YDKR+T K+++ R+ R + + Sbjct: 121 NGRAKVDIALARGKKEYDKRQTLKEKEDRREMDRAKKHY 159 >gi|313672341|ref|YP_004050452.1| ssra-binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312939097|gb|ADR18289.1| SsrA-binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 151 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 68/146 (46%), Positives = 99/146 (67%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ NRKA ++Y I+ ++E GIVL GTEVKS + +VN+ DS+ N E +L N++I Sbjct: 2 KVLTQNRKAYHDYEILETYEVGIVLQGTEVKSCKNGQVNLKDSHIRIVNGEAFLLNAHIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q N NH P R RKLLL KREI++L V+ G+TLVP+K+Y K K+++ALA+ Sbjct: 62 PYEQGNYTNHEPTRTRKLLLHKREINKLAGKVQEKGLTLVPLKMYLK-KNRVKLEIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK +DKR+ KK+D +++ R + Sbjct: 121 GKKTHDKRDEIKKKDLEKEFSRDFKN 146 >gi|295099571|emb|CBK88660.1| SsrA-binding protein [Eubacterium cylindroides T2-87] Length = 151 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 67/149 (44%), Positives = 102/149 (68%), Gaps = 1/149 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +K ++DNRKAR++Y + +EAG+ L GTE+KS+R KV + DSY +F N+E ++ Sbjct: 2 STQKTIADNRKARHDYELYDRYEAGLELKGTEIKSIRRGKVQLKDSYISFYNNEAYIKGM 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y N FNH R+RKLLL K+EI +LY R G T+VP+++Y + KGLAK+++A Sbjct: 62 HISPYEFGNIFNHDETRDRKLLLHKKEIRKLYQDTRIKGYTVVPVRLYLS-KGLAKLEIA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GK +DKRE++K +D R+ + L+ Sbjct: 121 LAKGKNLHDKRESQKAKDAKREIEKALKN 149 >gi|153855174|ref|ZP_01996358.1| hypothetical protein DORLON_02371 [Dorea longicatena DSM 13814] gi|149752343|gb|EDM62274.1| hypothetical protein DORLON_02371 [Dorea longicatena DSM 13814] Length = 154 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 1/149 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+V++N+KA ++Y I+ E GI L GTEVKSLR+ K +I +S+ EN E+++ Sbjct: 3 KSNDKMVANNKKAYHDYFILDKIETGIALHGTEVKSLRMGKCSIKESFIRIENGEVFIYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL K EI++L + GM +VP+K+YF L K+++ Sbjct: 63 MHISPYEKGNIFNKDPLRVRKLLLHKSEINKLIGKTKEKGMAIVPLKVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILR 156 LA+GKK YDKR+ K+D R+ R + Sbjct: 122 GLAKGKKLYDKRQDIAKKDQRREAERDFK 150 >gi|325297192|ref|YP_004257109.1| SsrA-binding protein [Bacteroides salanitronis DSM 18170] gi|324316745|gb|ADY34636.1| SsrA-binding protein [Bacteroides salanitronis DSM 18170] Length = 152 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 96/151 (63%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 + N++A ++Y + ++ AGIVLTGTE+KS+R K ++ D++ F E+W+ Sbjct: 2 KTNASNINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRQGKASLVDTFCFFSRGELWVK 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I EY + NH RR+RKLLL+K+E+ +L G T+VP ++Y N KGLAK+ Sbjct: 62 NMHIAEYFYGSYNNHAARRDRKLLLTKKELRKLERTSAEPGFTIVPTRMYINEKGLAKVV 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +ALA+GKK YDKR++ K+++ R R+ + Sbjct: 122 IALAKGKKQYDKRQSLKEKEDKRMMDRMFKR 152 >gi|87306626|ref|ZP_01088773.1| SsrA-binding protein [Blastopirellula marina DSM 3645] gi|87290805|gb|EAQ82692.1| SsrA-binding protein [Blastopirellula marina DSM 3645] Length = 176 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 98/150 (65%), Gaps = 2/150 (1%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 ++ + +NRKAR++Y I+ + E GI L G+EVK+LR KV++ +++A E++L N I Sbjct: 28 ERPIGENRKARHDYEIIDTLECGIQLVGSEVKTLRDGKVSLGEAFARVLRGEVFLVNCEI 87 Query: 71 PEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 PEY + F NH P+R RKLLL K EI + A G+++VP+K+YF +GL K+ L + Sbjct: 88 PEYRNTSMFLNHVPKRPRKLLLRKSEIVKFAAKSEDKGLSIVPLKMYFK-RGLVKVLLGI 146 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +G+K +DKR+ K++D R R++R + Sbjct: 147 GRGRKQHDKRDKLKQQDAKRDIARVMRSRD 176 >gi|330685644|gb|EGG97286.1| SsrA-binding protein [Staphylococcus epidermidis VCU121] Length = 154 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 99/156 (63%), Gaps = 3/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + +P +++NRKAR++Y+I + EAGIVL GTE+KS+R N+ DSYA + E Sbjct: 1 MAKKKSPG--TLAENRKARHDYNIEDTIEAGIVLQGTEIKSIRRGSANLKDSYAQVKRGE 58 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 I+L N +I Y + NRFNH P R+RKLLL KREI +L R G +++P+K+Y G Sbjct: 59 IYLNNMHIAPYEEGNRFNHDPLRSRKLLLHKREIIKLGDRTREIGYSIIPLKLYLK-HGQ 117 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ L +A+GKK YDKR+ K++ R R ++ Sbjct: 118 CKVLLGIARGKKKYDKRQALKEKAVKRDMDRAVKAR 153 >gi|116491420|ref|YP_810964.1| SsrA-binding protein [Oenococcus oeni PSU-1] gi|118587034|ref|ZP_01544465.1| tmRNA-binding protein, SsrA-binding protein [Oenococcus oeni ATCC BAA-1163] gi|290890999|ref|ZP_06554063.1| hypothetical protein AWRIB429_1453 [Oenococcus oeni AWRIB429] gi|122276398|sp|Q04E23|SSRP_OENOB RecName: Full=SsrA-binding protein gi|116092145|gb|ABJ57299.1| SsrA-binding protein [Oenococcus oeni PSU-1] gi|118432555|gb|EAV39290.1| tmRNA-binding protein, SsrA-binding protein [Oenococcus oeni ATCC BAA-1163] gi|290479398|gb|EFD88058.1| hypothetical protein AWRIB429_1453 [Oenococcus oeni AWRIB429] Length = 155 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 104/158 (65%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++ NR+A +NY I ++EAGI LTGTE+KS+R+ ++ I D+Y T + Sbjct: 1 MAKKDKHDDA---LARNRRASFNYFIGETYEAGIQLTGTEIKSVRLGQITIGDAYITVRD 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 + +L N+ I Y Q N+FN P R RKLLL K+EI L AV ++G T+VP+++Y K Sbjct: 58 QQAFLNNANISPYKQGNQFNVDPLRRRKLLLHKKEILALDRAVSKEGKTIVPLRVYI-VK 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AKI +A+ GKKNYDKR+T K+RD R+ + L+ Sbjct: 117 GFAKILIAIGTGKKNYDKRQTIKERDLKRELGKNLKNF 154 >gi|226325402|ref|ZP_03800920.1| hypothetical protein COPCOM_03204 [Coprococcus comes ATCC 27758] gi|225206145|gb|EEG88499.1| hypothetical protein COPCOM_03204 [Coprococcus comes ATCC 27758] Length = 147 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 62/142 (43%), Positives = 93/142 (65%), Gaps = 1/142 (0%) Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQAN 77 +KA ++Y I+ ++EAGI L GTEVKSLR+ K +I +S+ E+ E+++ +I Y + N Sbjct: 5 KKAYHDYFILDTYEAGIALAGTEVKSLRMGKCSIKESFIRIEDGEVFIYGMHISPYEKGN 64 Query: 78 RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYD 137 FN P R RKLLL K EI++L + GM +VP+K+YF+ K L K+++ LA+GKK YD Sbjct: 65 IFNKDPLRVRKLLLHKSEINKLIGKTKEKGMAIVPLKVYFS-KSLVKVEIGLAKGKKLYD 123 Query: 138 KRETEKKRDWDRQKHRILREHN 159 KR+ K+D R+ R + N Sbjct: 124 KRDDIAKKDQKREAEREFKIRN 145 >gi|42518803|ref|NP_964733.1| SsrA-binding protein [Lactobacillus johnsonii NCC 533] gi|61216578|sp|Q74K75|SSRP_LACJO RecName: Full=SsrA-binding protein gi|41583089|gb|AAS08699.1| SsrA-binding protein [Lactobacillus johnsonii NCC 533] gi|329667648|gb|AEB93596.1| SsrA-binding protein [Lactobacillus johnsonii DPC 6026] Length = 151 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 4/151 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N Sbjct: 1 MKQKAD---NLIAQNKKASHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIINGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL KREI RL + GM ++P+K+Y G Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKREIARLAGIQAQQGMAIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ + + QGKK YDKR+T KKRD DR+ HR Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147 >gi|170725877|ref|YP_001759903.1| SsrA-binding protein [Shewanella woodyi ATCC 51908] gi|238688682|sp|B1KKG8|SSRP_SHEWM RecName: Full=SsrA-binding protein gi|169811224|gb|ACA85808.1| SsrA-binding protein [Shewanella woodyi ATCC 51908] Length = 164 Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 84/145 (57%), Gaps = 1/145 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N++A ++Y EAG+ L G EVKS+R+ KVN+S+SY E +L I Sbjct: 16 IARNKRATFDYKFEEKMEAGLSLMGWEVKSIRMGKVNLSESYVFMREGEAFLFGCTIAPL 75 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R+RKLLL ++E+ +L V R G ++VP+ +Y+ KI++ L +G Sbjct: 76 NTASTHVVCDPMRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYWQKGAWVKIEIGLGKG 135 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR+ K R+W +K R +++ Sbjct: 136 KKEHDKRDDTKDREWQIEKARTMKK 160 >gi|256390609|ref|YP_003112173.1| SsrA-binding protein [Catenulispora acidiphila DSM 44928] gi|256356835|gb|ACU70332.1| SsrA-binding protein [Catenulispora acidiphila DSM 44928] Length = 161 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 64/142 (45%), Positives = 94/142 (66%), Gaps = 1/142 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +KV++ N+KAR+ Y I ++EAGI LTGTEVKSLR + ++ D YA ++ E+WL Sbjct: 3 KEQGQKVIARNKKARHEYEIEATYEAGISLTGTEVKSLRAGRASLVDGYAVIKDAEVWLQ 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I EY + NH PRRNRKLLL + EI++L + G+TL+P+++YF G K++ Sbjct: 63 GVHIAEYAEGTWTNHSPRRNRKLLLHRAEINKLIGKTKETGLTLIPLELYFKD-GKVKVE 121 Query: 127 LALAQGKKNYDKRETEKKRDWD 148 + LA+GKK YDKR+T +R Sbjct: 122 IGLARGKKTYDKRQTLMERQNK 143 >gi|71907961|ref|YP_285548.1| SsrA-binding protein [Dechloromonas aromatica RCB] gi|123627212|sp|Q47DK3|SSRP_DECAR RecName: Full=SsrA-binding protein gi|71847582|gb|AAZ47078.1| SsrA-binding protein [Dechloromonas aromatica RCB] Length = 149 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y + +EAGI L G EVK++R ++NI +SY + E++L +I Sbjct: 3 ITVNKKAFHDYFVEEKYEAGISLEGWEVKAIRAGRMNIKESYVIIKGGELFLIGMHISPL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + +H P R RKLLL +EI +L V R G LVP+ ++F +G K+++ LA+G Sbjct: 63 ATASTHVSHDPTRTRKLLLHAKEISKLIGKVERAGYALVPLDLHF-VRGRIKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKR E +D R+ R ++E Sbjct: 122 KKQHDKRADELDKDSKREAQRAMKER 147 >gi|314923652|gb|EFS87483.1| SsrA-binding protein [Propionibacterium acnes HL001PA1] Length = 160 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 KVV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVKVVARNRRAAHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWIYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALVNR 154 >gi|212694452|ref|ZP_03302580.1| hypothetical protein BACDOR_03980 [Bacteroides dorei DSM 17855] gi|237711210|ref|ZP_04541691.1| SsrA-binding protein [Bacteroides sp. 9_1_42FAA] gi|237727574|ref|ZP_04558055.1| SsrA-binding protein [Bacteroides sp. D4] gi|265750801|ref|ZP_06086864.1| SsrA-binding protein [Bacteroides sp. 3_1_33FAA] gi|212662953|gb|EEB23527.1| hypothetical protein BACDOR_03980 [Bacteroides dorei DSM 17855] gi|229434430|gb|EEO44507.1| SsrA-binding protein [Bacteroides dorei 5_1_36/D4] gi|229455054|gb|EEO60775.1| SsrA-binding protein [Bacteroides sp. 9_1_42FAA] gi|263237697|gb|EEZ23147.1| SsrA-binding protein [Bacteroides sp. 3_1_33FAA] Length = 150 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 101/149 (67%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P V N++A ++Y + ++ AGIVLTGTE+KS+R+ K ++ D+Y F E+W+ N Sbjct: 2 KPTPVNIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRLGKASLVDTYCYFVQGELWVKNM 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY + NH RR RKLLLSK+E+ +L A + G T+VP++++ N KGLAK+ +A Sbjct: 62 HIAEYFYGSYNNHSARRERKLLLSKKELRKLEEAGKNPGFTIVPVRLFINEKGLAKLVVA 121 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GKK YDKRE+ K++D R+ R+ + Sbjct: 122 LAKGKKQYDKRESLKEKDDRREMDRMFKR 150 >gi|194335973|ref|YP_002017767.1| SsrA-binding protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308450|gb|ACF43150.1| SsrA-binding protein [Pelodictyon phaeoclathratiforme BU-1] Length = 157 Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats. Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + + NRKAR+ + I+ + AGI L G+EVKS+R+ + ++SDS+A Sbjct: 1 MAKKQQTQQYVQAI-QNRKARFEFEILDTLVAGIQLFGSEVKSVRLGQASLSDSFAIILR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +EIWL I Y +R+RKLLL K EI ++ A + G+TLVP+K +FN+K Sbjct: 60 NEIWLEGMQITPYAHNRMELIEAKRSRKLLLHKEEIRKIEAKISEKGLTLVPLKAFFNSK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL KI+LA+A+GKK YDKRET K R+ RQ +I +++ Sbjct: 120 GLLKIELAIAKGKKLYDKRETIKARENQRQMEQIKKQY 157 >gi|326773751|ref|ZP_08233034.1| SsrA-binding protein [Actinomyces viscosus C505] gi|326636981|gb|EGE37884.1| SsrA-binding protein [Actinomyces viscosus C505] Length = 178 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61 + K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ + Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIEIDRHG 77 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLATRVQAKGYTVVPLELYFIG-G 136 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148 AK+++ALA+GK+++DKR+ ++ Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163 >gi|55820705|ref|YP_139147.1| SsrA-binding protein [Streptococcus thermophilus LMG 18311] gi|55822596|ref|YP_141037.1| SsrA-binding protein [Streptococcus thermophilus CNRZ1066] gi|116627511|ref|YP_820130.1| SsrA-binding protein [Streptococcus thermophilus LMD-9] gi|67461894|sp|Q5M0N4|SSRP_STRT1 RecName: Full=SsrA-binding protein gi|67461896|sp|Q5M570|SSRP_STRT2 RecName: Full=SsrA-binding protein gi|122267891|sp|Q03LI8|SSRP_STRTD RecName: Full=SsrA-binding protein gi|55736690|gb|AAV60332.1| tmRNA-binding protein SsrA [Streptococcus thermophilus LMG 18311] gi|55738581|gb|AAV62222.1| tmRNA-binding protein SsrA [Streptococcus thermophilus CNRZ1066] gi|116100788|gb|ABJ65934.1| SsrA-binding protein [Streptococcus thermophilus LMD-9] gi|312278030|gb|ADQ62687.1| SsrA-binding protein [Streptococcus thermophilus ND03] Length = 154 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLINVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQDPERTRKLLLKKKQITKLQNDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R RI++ N Sbjct: 126 GKHDYDKRESIKRREQERDIKRIIKSVN 153 >gi|171463290|ref|YP_001797403.1| SsrA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192828|gb|ACB43789.1| SsrA-binding protein [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 150 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PE 72 + DN+KA ++Y I FEAG+VL G EVK++R V+I ++Y E++LT +I P Sbjct: 3 IVDNKKAFFDYFIEERFEAGLVLEGWEVKAIRAGCVHIKEAYVVIRKAELFLTGCHITPL 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL+ EI +L V + G TLVP+ ++F+ KG K ++ LA+G Sbjct: 63 LSTSTHIVPNNTRTRKLLLNAIEIRKLIGKVEQKGYTLVPLNLHFS-KGNVKCEIGLARG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK ++KR K+R+W+ QK RI R Sbjct: 122 KKQHNKRAATKEREWEVQKGRIAR 145 >gi|15892519|ref|NP_360233.1| SsrA-binding protein [Rickettsia conorii str. Malish 7] gi|20140114|sp|Q92I24|SSRP_RICCN RecName: Full=SsrA-binding protein gi|15619679|gb|AAL03134.1| small protein B homolog [Rickettsia conorii str. Malish 7] Length = 152 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTRHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|260221440|emb|CBA30005.1| SsrA-binding protein [Curvibacter putative symbiont of Hydra magnipapillata] Length = 147 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 2/146 (1%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PEY 73 +DN+KA +NY FEAG+VL G EVKSLR KV ++D Y + E+++ I P + Sbjct: 2 ADNKKAAFNYFFEERFEAGLVLEGWEVKSLREGKVQLTDGYVVIRDGEMFIIGLQINPLH 61 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 ++ + R +KLLL K EI RL V + G TLVP+ +++ + G K D+ALA+GK Sbjct: 62 TASSHVSPDKIRTKKLLLHKEEIKRLTGKVEQKGYTLVPINLHWKS-GKVKCDIALAKGK 120 Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159 +DKR+T K R+ R+ R +++ N Sbjct: 121 AEHDKRDTIKDREGKREVERAMKDRN 146 >gi|157828467|ref|YP_001494709.1| SsrA-binding protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933185|ref|YP_001649974.1| SsrA-binding protein [Rickettsia rickettsii str. Iowa] gi|30173368|sp|Q9AKJ8|SSRP_RICRI RecName: Full=SsrA-binding protein gi|166223446|sp|A8GS26|SSRP_RICRS RecName: Full=SsrA-binding protein gi|189046840|sp|B0BXJ2|SSRP_RICRO RecName: Full=SsrA-binding protein gi|13235365|emb|CAC33658.1| Small protein [Rickettsia rickettsii] gi|157800948|gb|ABV76201.1| SsrA-binding protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908272|gb|ABY72568.1| SsrA-binding protein [Rickettsia rickettsii str. Iowa] Length = 152 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA ++Y I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFHYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|161579587|ref|NP_218623.2| SsrA-binding protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025417|ref|YP_001933189.1| SsrA-binding protein [Treponema pallidum subsp. pallidum SS14] gi|8247958|sp|O83214|SSRP_TREPA RecName: Full=SsrA-binding protein gi|238689315|sp|B2S2D1|SSRP_TREPS RecName: Full=SsrA-binding protein gi|189017992|gb|ACD70610.1| small protein B [Treponema pallidum subsp. pallidum SS14] gi|291059591|gb|ADD72326.1| SsrA-binding protein [Treponema pallidum subsp. pallidum str. Chicago] Length = 154 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 83/147 (56%), Gaps = 1/147 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +++ NRKA +NYH+ E GI L GTEVKS+R ++ D++A E+WL N Sbjct: 4 TGTHLIAKNRKAFFNYHVEDRLECGIALEGTEVKSVRAGHLSFPDAFAEMRGGELWLKNV 63 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY+ A F P R RKLL + +I RL V G TLVP++ Y A G K+ L Sbjct: 64 HIAEYVHACSFAPNPDRMRKLLAHRDQIARLKRKVEEKGYTLVPLEFYLKA-GRVKVALG 122 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRIL 155 + +GKK +DKR K RD R+ R L Sbjct: 123 ICKGKKLFDKRAQIKARDNARELSRSL 149 >gi|154495152|ref|ZP_02034157.1| hypothetical protein PARMER_04200 [Parabacteroides merdae ATCC 43184] gi|154085702|gb|EDN84747.1| hypothetical protein PARMER_04200 [Parabacteroides merdae ATCC 43184] Length = 153 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 102/152 (67%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + N++A ++Y ++ +F AGIVLTGTE+KS+R+ K ++ D++ E E+W+ Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N Y+ EY NH RR+RKLLL+K+E+ ++ +A R +G T++P +++ N KGLAK+ Sbjct: 62 KNMYVAEYFYGTYNNHTARRDRKLLLTKKELRKIESAARNNGFTIIPTRLFINDKGLAKV 121 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+A+GKK YDKR++ K+RD R+ R + Sbjct: 122 VVAIAKGKKEYDKRDSIKERDDRREMDRAFKR 153 >gi|313203308|ref|YP_004041965.1| ssra-binding protein [Paludibacter propionicigenes WB4] gi|312442624|gb|ADQ78980.1| SsrA-binding protein [Paludibacter propionicigenes WB4] Length = 151 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 98/148 (66%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 ++ N++A ++Y I+ + AGI L GTE+KS+R K +++D+Y TF N+E+W+ N Sbjct: 3 KKSNILIRNKRATFDYEILDKYLAGIQLYGTEIKSIRDGKASLADTYCTFINNELWVRNM 62 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y NH RR+RKLLL+KRE+++L + G T++P K++ N KGLAK+++ Sbjct: 63 HIATYFFGTYNNHDVRRDRKLLLTKRELNKLIRGTKETGNTIIPTKMFINDKGLAKLEIG 122 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILR 156 L +GKK YDKR++ K+++ R R +R Sbjct: 123 LGKGKKTYDKRQSLKEKEDKRSIDRAMR 150 >gi|229586708|ref|YP_002845209.1| SsrA-binding protein [Rickettsia africae ESF-5] gi|259511428|sp|C3PNF6|SSRP_RICAE RecName: Full=SsrA-binding protein gi|228021758|gb|ACP53466.1| tmRNA-binding protein [Rickettsia africae ESF-5] Length = 152 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIAERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|261377604|ref|ZP_05982177.1| SsrA-binding protein [Neisseria cinerea ATCC 14685] gi|269146355|gb|EEZ72773.1| SsrA-binding protein [Neisseria cinerea ATCC 14685] Length = 148 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDQIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL + EI++L R G T+VP+ ++F+ +G K+++ LA+G Sbjct: 63 PTASTHIKPDATRPRKLLLKQSEINKLIGKTERAGYTIVPLNLHFS-RGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146 >gi|227873358|ref|ZP_03991618.1| tmRNA-binding protein [Oribacterium sinus F0268] gi|227840794|gb|EEJ51164.1| tmRNA-binding protein [Oribacterium sinus F0268] Length = 163 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 60/153 (39%), Positives = 93/153 (60%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K +++N+KA ++Y + SFE GI L GTEVKSLR+ + +I +++ N E ++ Sbjct: 9 TKESIKQIANNKKAFHDYFVEESFECGIQLFGTEVKSLRLGQASIKEAFCQIRNGECFVV 68 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN R+RKLLL K+EIHRL ++ G TL+P+ +YF L K++ Sbjct: 69 GMHINPYERGNIFNKDALRDRKLLLHKQEIHRLLGKIKEQGYTLMPLSLYFKGS-LVKLN 127 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + L +GKK YDKRE KK+ R+ + ++ N Sbjct: 128 MGLCRGKKLYDKREDMKKKAQRRELEKEFKKAN 160 >gi|150005062|ref|YP_001299806.1| SsrA-binding protein [Bacteroides vulgatus ATCC 8482] gi|254883196|ref|ZP_05255906.1| SsrA-binding protein [Bacteroides sp. 4_3_47FAA] gi|294779020|ref|ZP_06744435.1| SsrA-binding protein [Bacteroides vulgatus PC510] gi|319642570|ref|ZP_07997217.1| SsrA-binding protein [Bacteroides sp. 3_1_40A] gi|166222360|sp|A6L3C0|SSRP_BACV8 RecName: Full=SsrA-binding protein gi|149933486|gb|ABR40184.1| SsrA-binding protein [Bacteroides vulgatus ATCC 8482] gi|254835989|gb|EET16298.1| SsrA-binding protein [Bacteroides sp. 4_3_47FAA] gi|294447178|gb|EFG15763.1| SsrA-binding protein [Bacteroides vulgatus PC510] gi|317385804|gb|EFV66736.1| SsrA-binding protein [Bacteroides sp. 3_1_40A] Length = 150 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 101/149 (67%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 P + N++A ++Y + ++ AGIVLTGTE+KS+R+ K ++ D+Y F E+W+ N Sbjct: 2 KPTPINIKNKRASFDYEFIDTYTAGIVLTGTEIKSIRLGKASLVDTYCYFVQGELWVKNM 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I EY + NH RR RKLLL+K+E+ +L A + G T+VP++++ N KGLAK+ +A Sbjct: 62 HIAEYFYGSYNNHSARRERKLLLNKKELRKLEEAGKNPGFTIVPVRLFINEKGLAKLVVA 121 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GKK YDKRE+ K++D R+ R+ + Sbjct: 122 LAKGKKQYDKRESLKEKDDRREMDRMFKR 150 >gi|313837554|gb|EFS75268.1| SsrA-binding protein [Propionibacterium acnes HL037PA2] gi|314927567|gb|EFS91398.1| SsrA-binding protein [Propionibacterium acnes HL044PA1] gi|314972493|gb|EFT16590.1| SsrA-binding protein [Propionibacterium acnes HL037PA3] gi|328907836|gb|EGG27599.1| SsrA-binding protein [Propionibacterium sp. P08] Length = 160 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 KVV+ NR+A ++Y I +EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVKVVARNRRATHDYTIGDKWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T++P+++YF G AK+++A Sbjct: 66 HIPEYAFGTWRNHNVMRKRKLLLNKREIAKLSREADGPGKTIIPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD +R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDANREAQRALANR 154 >gi|315651155|ref|ZP_07904187.1| SsrA-binding protein [Eubacterium saburreum DSM 3986] gi|315486620|gb|EFU76970.1| SsrA-binding protein [Eubacterium saburreum DSM 3986] Length = 153 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KV+++N+KA ++Y I+ ++E GI L GTEVKS+R+ V+I +S+ E E+++ + Sbjct: 4 GIKVIANNKKAYFDYFILENYETGIELFGTEVKSVRMGHVSIKESWIRIERGELFIMGMH 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y + N FN P R RKLL+ K+EI +L A + G+T+VP+K+Y L K+++ L Sbjct: 64 INPYEKGNIFNKDPLRVRKLLMHKKEILKLDAKLNEKGLTIVPLKVYLKGS-LVKVEIGL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GKKNYDKRET K+ R+ + ++ Sbjct: 123 AKGKKNYDKRETLAKKTQQREIEKAMKR 150 >gi|322372550|ref|ZP_08047086.1| SsrA-binding protein [Streptococcus sp. C150] gi|321277592|gb|EFX54661.1| SsrA-binding protein [Streptococcus sp. C150] Length = 154 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 102/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 VV+ N+KAR++Y IV + EAGIVLTGTE+KS+R +++ + D YA +N E WL N +I Sbjct: 7 NVVAQNKKARHDYSIVDTIEAGIVLTGTEIKSVRAARIQLKDGYAQIKNGEAWLLNVHIA 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + Q N +N P R RKLLL K++I +L ++ GMTLVP+K+Y G AK+ L +A+ Sbjct: 67 PFEQGNIWNQDPDRIRKLLLKKKQIVKLANDLKGTGMTLVPLKVYLK-NGFAKVLLGIAK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK +YDKRE+ K+R+ +R R+++ N Sbjct: 126 GKHDYDKRESIKRREQERDIKRVIKSVN 153 >gi|255003540|ref|ZP_05278504.1| SsrA-binding protein [Anaplasma marginale str. Puerto Rico] gi|255004665|ref|ZP_05279466.1| SsrA-binding protein [Anaplasma marginale str. Virginia] Length = 149 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 74/145 (51%), Positives = 108/145 (74%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +V++NRKAR++Y +++ ++AG+VL G+EVKSLR KVN+ D+Y ++ E+W+ N +I E Sbjct: 3 IVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y +++R NH P R RKLLL KREIH++ ++ G+ +VP+ I+FN KGLAKI +A+ +G Sbjct: 63 YNRSDRKNHKPLRVRKLLLRKREIHKIAGNIKVSGLAVVPLMIFFNNKGLAKIKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K RDW R+K RI R Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147 >gi|325068366|ref|ZP_08127039.1| SsrA-binding protein [Actinomyces oris K20] Length = 178 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61 + K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ + Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIELDRHG 77 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLETRVQAKGYTVVPLELYFIG-G 136 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148 AK+++ALA+GK+++DKR+ ++ Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163 >gi|300871194|ref|YP_003786067.1| SsrA-binding protein [Brachyspira pilosicoli 95/1000] gi|300688895|gb|ADK31566.1| SsrA-binding protein [Brachyspira pilosicoli 95/1000] Length = 161 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 74/144 (51%), Positives = 104/144 (72%), Gaps = 1/144 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA +NY ++ FEAGIVL GTEVKSLR VN+SDSYA+F+ E+++ N +I Y Sbjct: 19 IARNKKALFNYEVIEKFEAGIVLLGTEVKSLRDRGVNMSDSYASFKKGELFIVNMHISPY 78 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 NR NH P R RKLL+ KREI RLY ++ G+TL+P+ +YF+ +G K++LALA+GK Sbjct: 79 HFGNRNNHEPLRERKLLMKKREIKRLYGKIKEQGLTLIPISLYFS-RGKVKVELALAKGK 137 Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157 K +DKRET KK+ DR+ R ++ Sbjct: 138 KLHDKRETLKKKALDREMERYIKR 161 >gi|154250183|ref|YP_001411008.1| SsrA-binding protein [Fervidobacterium nodosum Rt17-B1] gi|187611497|sp|A7HN68|SSRP_FERNB RecName: Full=SsrA-binding protein gi|154154119|gb|ABS61351.1| SsrA-binding protein [Fervidobacterium nodosum Rt17-B1] Length = 149 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 101/147 (68%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++ N+KA +Y I ++EAGIVL GTEVKSLR + DS+ + EIWL N +IP Sbjct: 2 RIIATNKKAYTDYIIDETYEAGIVLVGTEVKSLREHGASFKDSFCRVKEGEIWLLNLHIP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N +NH P R RKLLL K+EI R+++ ++ +G T++P KIYFN +G K+++A+A+ Sbjct: 62 PYQHGNIYNHDPERPRKLLLHKKEIDRIWSKLKLEGYTVIPTKIYFNNQGKVKVEIAIAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK+YDKRE KK++ ++ L+ + Sbjct: 122 GKKSYDKREEIKKKETQKRIKEYLKYN 148 >gi|268319801|ref|YP_003293457.1| SsrA-binding protein SmpB [Lactobacillus johnsonii FI9785] gi|262398176|emb|CAX67190.1| SsrA-binding protein SmpB [Lactobacillus johnsonii FI9785] Length = 151 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 4/151 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N Sbjct: 1 MKQKAD---NLIAQNKKASHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIINGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL K+EI RL + GM ++P+K+Y G Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKKEIVRLAGIQAQQGMAIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ + + QGKK YDKR+T KKRD DR+ HR Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147 >gi|118594660|ref|ZP_01552007.1| SsrA-binding protein [Methylophilales bacterium HTCC2181] gi|118440438|gb|EAV47065.1| SsrA-binding protein [Methylophilales bacterium HTCC2181] Length = 151 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 2/147 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA ++Y I +EAGIVL G EVK++R ++ +I ++Y + EI+L +I Sbjct: 3 IVQNKKAFHDYFIEAKYEAGIVLEGWEVKAIRDNRAHIKEAYVIIQRGEIYLLGCHITPM 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N R RKLLL+ EI +L V R G TLVP+ +++ KG K ++ LA+G Sbjct: 63 GNASTHINPENVRTRKLLLNNDEIAKLIGKVERSGYTLVPLDLHYK-KGFIKCEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKR EK++DW+R K RI+R N Sbjct: 122 KKQYDKRAVEKEKDWNRDKTRIIRAVN 148 >gi|120599673|ref|YP_964247.1| SsrA-binding protein [Shewanella sp. W3-18-1] gi|146292332|ref|YP_001182756.1| SsrA-binding protein [Shewanella putrefaciens CN-32] gi|166223454|sp|A4Y4S4|SSRP_SHEPC RecName: Full=SsrA-binding protein gi|166223456|sp|A1RLZ8|SSRP_SHESW RecName: Full=SsrA-binding protein gi|120559766|gb|ABM25693.1| SsrA-binding protein [Shewanella sp. W3-18-1] gi|145564022|gb|ABP74957.1| SsrA-binding protein [Shewanella putrefaciens CN-32] gi|319425634|gb|ADV53708.1| SsrA-binding protein [Shewanella putrefaciens 200] Length = 163 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 90/158 (56%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K ++ N++A + Y EAG+ L G EVKS+R+ KVN+SD Y +N Sbjct: 1 MVKKKSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+ Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K R+W+ +K R++++ Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158 >gi|126173545|ref|YP_001049694.1| SsrA-binding protein [Shewanella baltica OS155] gi|152999830|ref|YP_001365511.1| SsrA-binding protein [Shewanella baltica OS185] gi|160874453|ref|YP_001553769.1| SsrA-binding protein [Shewanella baltica OS195] gi|217974209|ref|YP_002358960.1| SsrA-binding protein [Shewanella baltica OS223] gi|304409416|ref|ZP_07391036.1| SsrA-binding protein [Shewanella baltica OS183] gi|307303774|ref|ZP_07583527.1| SsrA-binding protein [Shewanella baltica BA175] gi|166223451|sp|A3D262|SSRP_SHEB5 RecName: Full=SsrA-binding protein gi|166223452|sp|A6WKV9|SSRP_SHEB8 RecName: Full=SsrA-binding protein gi|189046844|sp|A9KTG8|SSRP_SHEB9 RecName: Full=SsrA-binding protein gi|254778378|sp|B8EAZ5|SSRP_SHEB2 RecName: Full=SsrA-binding protein gi|125996750|gb|ABN60825.1| SsrA-binding protein [Shewanella baltica OS155] gi|151364448|gb|ABS07448.1| SsrA-binding protein [Shewanella baltica OS185] gi|160859975|gb|ABX48509.1| SsrA-binding protein [Shewanella baltica OS195] gi|217499344|gb|ACK47537.1| SsrA-binding protein [Shewanella baltica OS223] gi|304351934|gb|EFM16332.1| SsrA-binding protein [Shewanella baltica OS183] gi|306912672|gb|EFN43095.1| SsrA-binding protein [Shewanella baltica BA175] gi|315266689|gb|ADT93542.1| SsrA-binding protein [Shewanella baltica OS678] Length = 163 Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K+ ++ N++A + Y EAG+ L G EVKS+R+ KVN+SD Y +N Sbjct: 1 MVKKNSSKAAPATIARNKRATFEYRFEEKMEAGLSLMGWEVKSIRMGKVNLSDCYVFLKN 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E ++ IP + P R +KLLLS++E+ +L V R G +++P+ +Y+ Sbjct: 61 GEAFMHGCTIIPLNTASTHVVCDPLRLKKLLLSRKELDKLAGLVERQGYSIIPISMYWRK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ L +GKK++DKRE K R+W+ +K R++++ Sbjct: 121 GAWVKVEIGLGKGKKDHDKREDTKAREWEVEKARVMKK 158 >gi|58038549|ref|YP_190513.1| SsrA-binding protein [Gluconobacter oxydans 621H] gi|67461240|sp|Q5FUX0|SSRP_GLUOX RecName: Full=SsrA-binding protein gi|58000963|gb|AAW59857.1| SsrA-binding protein [Gluconobacter oxydans 621H] Length = 164 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 99/158 (62%), Gaps = 2/158 (1%) Query: 1 MSLKSRGN--PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ K + + + NRK R++Y I+ + EAGIVL G EVKSLR+ + I+++YA Sbjct: 1 MAGKKTKSGMISHGMAAQNRKGRFDYTILETTEAGIVLKGPEVKSLRLGRATITEAYAAE 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + EIWL NSYIPEY PR RKLL+ +++I AV R G +LVP+ I+FN Sbjct: 61 RDGEIWLFNSYIPEYQGGVLSRFEPRAPRKLLMHRKQIAHFLGAVSRAGASLVPLDIHFN 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 A+G+AK+ L L QG++ DKR +RDW R K R++R Sbjct: 121 ARGMAKVTLGLGQGRRKEDKRHAIAERDWKRDKARLVR 158 >gi|115372775|ref|ZP_01460081.1| SsrA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|310823431|ref|YP_003955789.1| ssra-binding protein [Stigmatella aurantiaca DW4/3-1] gi|115370256|gb|EAU69185.1| SsrA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309396503|gb|ADO73962.1| SsrA-binding protein [Stigmatella aurantiaca DW4/3-1] Length = 161 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 64/147 (43%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV+++NRKAR Y + EAG+ L G+EVKSLR N+SD+YA + +E++L N++I Sbjct: 16 KVITENRKARAAYSVDEKLEAGLELLGSEVKSLRDGTANLSDAYALPKGNELYLLNAHIG 75 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y AN F H P R RKLLL + EI R A VR G +++P+ +YF G AK++L L + Sbjct: 76 TYKPANVFTHEPTRGRKLLLHREEIDRWAAKVRERGYSIIPLVLYFK-NGRAKVELGLCR 134 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK + D+R+ K+R+ R+ R +R Sbjct: 135 GKTHEDRRQDIKERETKREMDRAVRRR 161 >gi|313792398|gb|EFS40493.1| SsrA-binding protein [Propionibacterium acnes HL110PA1] gi|313801466|gb|EFS42715.1| SsrA-binding protein [Propionibacterium acnes HL110PA2] gi|313838229|gb|EFS75943.1| SsrA-binding protein [Propionibacterium acnes HL086PA1] gi|314963182|gb|EFT07282.1| SsrA-binding protein [Propionibacterium acnes HL082PA1] gi|315078245|gb|EFT50288.1| SsrA-binding protein [Propionibacterium acnes HL053PA2] gi|327453493|gb|EGF00148.1| SsrA-binding protein [Propionibacterium acnes HL092PA1] Length = 160 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT-FENDEIWLTNS 68 +VV+ NR+A ++Y I ++EAG+VL GTEVKSLR K ++D++A E E+W+ N Sbjct: 6 GVRVVARNRRATHDYTIGDTWEAGLVLQGTEVKSLRAGKATLTDAFAQVDERGEVWMYNL 65 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +IPEY NH R RKLLL+KREI +L G T+VP+++YF G AK+++A Sbjct: 66 HIPEYALGTWRNHDVMRKRKLLLNKREIAKLSREADGPGKTIVPLQLYFKD-GYAKVEIA 124 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GK+++DKR+ ++RD R+ R L Sbjct: 125 VGTGKRDWDKRQAIRERDAKREAQRALANR 154 >gi|59801371|ref|YP_208083.1| SsrA-binding protein [Neisseria gonorrhoeae FA 1090] gi|194098370|ref|YP_002001428.1| SsrA-binding protein [Neisseria gonorrhoeae NCCP11945] gi|254493566|ref|ZP_05106737.1| SsrA-binding protein [Neisseria gonorrhoeae 1291] gi|260440732|ref|ZP_05794548.1| SsrA-binding protein [Neisseria gonorrhoeae DGI2] gi|268594625|ref|ZP_06128792.1| SsrA-binding protein [Neisseria gonorrhoeae 35/02] gi|268597048|ref|ZP_06131215.1| SsrA-binding protein [Neisseria gonorrhoeae FA19] gi|268598773|ref|ZP_06132940.1| SsrA-binding protein [Neisseria gonorrhoeae MS11] gi|268601132|ref|ZP_06135299.1| SsrA-binding protein [Neisseria gonorrhoeae PID18] gi|268603450|ref|ZP_06137617.1| SsrA-binding protein [Neisseria gonorrhoeae PID1] gi|268681930|ref|ZP_06148792.1| SsrA-binding protein [Neisseria gonorrhoeae PID332] gi|268684145|ref|ZP_06151007.1| SsrA-binding protein [Neisseria gonorrhoeae SK-92-679] gi|268686398|ref|ZP_06153260.1| SsrA-binding protein [Neisseria gonorrhoeae SK-93-1035] gi|291044046|ref|ZP_06569762.1| SsrA-binding protein [Neisseria gonorrhoeae DGI2] gi|293399232|ref|ZP_06643397.1| SsrA-binding protein [Neisseria gonorrhoeae F62] gi|296314031|ref|ZP_06863972.1| SsrA-binding protein [Neisseria polysaccharea ATCC 43768] gi|59718266|gb|AAW89671.1| putative small protein B homolog [Neisseria gonorrhoeae FA 1090] gi|193933660|gb|ACF29484.1| SsrA-binding protein [Neisseria gonorrhoeae NCCP11945] gi|226512606|gb|EEH61951.1| SsrA-binding protein [Neisseria gonorrhoeae 1291] gi|268548014|gb|EEZ43432.1| SsrA-binding protein [Neisseria gonorrhoeae 35/02] gi|268550836|gb|EEZ45855.1| SsrA-binding protein [Neisseria gonorrhoeae FA19] gi|268582904|gb|EEZ47580.1| SsrA-binding protein [Neisseria gonorrhoeae MS11] gi|268585263|gb|EEZ49939.1| SsrA-binding protein [Neisseria gonorrhoeae PID18] gi|268587581|gb|EEZ52257.1| SsrA-binding protein [Neisseria gonorrhoeae PID1] gi|268622214|gb|EEZ54614.1| SsrA-binding protein [Neisseria gonorrhoeae PID332] gi|268624429|gb|EEZ56829.1| SsrA-binding protein [Neisseria gonorrhoeae SK-92-679] gi|268626682|gb|EEZ59082.1| SsrA-binding protein [Neisseria gonorrhoeae SK-93-1035] gi|291012509|gb|EFE04498.1| SsrA-binding protein [Neisseria gonorrhoeae DGI2] gi|291610646|gb|EFF39756.1| SsrA-binding protein [Neisseria gonorrhoeae F62] gi|296839277|gb|EFH23215.1| SsrA-binding protein [Neisseria polysaccharea ATCC 43768] gi|317164071|gb|ADV07612.1| SsrA-binding protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 150 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I Sbjct: 5 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 64 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL + EI++L R G T+VP+ ++F+ +G K+++ LA+G Sbjct: 65 PTASTHIKPDAVRPRKLLLKQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 123 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 124 KKQHDKRQSMKEADWKREKQRLIKH 148 >gi|152991218|ref|YP_001356940.1| SsrA-binding protein [Nitratiruptor sp. SB155-2] gi|166223231|sp|A6Q524|SSRP_NITSB RecName: Full=SsrA-binding protein gi|151423079|dbj|BAF70583.1| ssrA RNA-binding protein [Nitratiruptor sp. SB155-2] Length = 150 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 96/148 (64%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA +++ I+ +EAG+VL G+EVK++R +VN+ DS+ F E ++ +I Sbjct: 2 KVIATNKKAFHDFEILERYEAGLVLQGSEVKAIRAGRVNLKDSFVKFVKGEPFVFGMHIS 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 AN F +R RKLLL K+EI +L G T+VP+K+YFN K +AK+++ LA Sbjct: 62 YLDSANPHFRPDEKRPRKLLLHKKEIDKLIGKTSEKGYTIVPLKLYFNKKNIAKLEIGLA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRE+ KK+ DR+ ++E+ Sbjct: 122 KGKTLHDKRESLKKKIMDREARAAMKEY 149 >gi|323345569|ref|ZP_08085792.1| SsrA-binding protein [Prevotella oralis ATCC 33269] gi|323093683|gb|EFZ36261.1| SsrA-binding protein [Prevotella oralis ATCC 33269] Length = 159 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 96/144 (66%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA + Y+ V ++ AGIVLTGTE+KS+R K ++ DS+ N EIW+ I Y Sbjct: 16 IRNKKASFEYYFVDTYTAGIVLTGTEIKSIRQGKASLVDSFCYINNGEIWVKGMNISPYF 75 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + NH +R+RKLLL+KREI++L A + G T+VP+ ++ + KG AK+D+ALA+GKK Sbjct: 76 YGSYANHEAKRDRKLLLTKREIYKLQEATKAVGFTIVPILVFIDGKGRAKVDIALARGKK 135 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKR+T K+++ R+ R ++ Sbjct: 136 EYDKRQTLKEKEDRREMDRAIKHF 159 >gi|303228998|ref|ZP_07315808.1| SsrA-binding protein [Veillonella atypica ACS-134-V-Col7a] gi|303231499|ref|ZP_07318229.1| SsrA-binding protein [Veillonella atypica ACS-049-V-Sch6] gi|302513842|gb|EFL55854.1| SsrA-binding protein [Veillonella atypica ACS-049-V-Sch6] gi|302516412|gb|EFL58344.1| SsrA-binding protein [Veillonella atypica ACS-134-V-Col7a] Length = 156 Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +++DNRKAR++++I ++EAGI LTGTE+KS+R K+N+ DS+ + Sbjct: 1 MAKKDAPS----LIADNRKARHDFNIHETYEAGIALTGTEIKSIRQGKLNLKDSFIRIDK 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+ L +I Y Q NRFNH P R RKLL+ K EI +L+ V+ G +L+P+ +F+ + Sbjct: 57 GEMLLYGVHISPYEQGNRFNHEPERTRKLLMHKSEIKKLFQQVKEKGFSLIPLNFHFS-R 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+ + L GKK YDKR+ +RD R + L+E Sbjct: 116 GYVKVTVGLVTGKKLYDKRQDMAERDAKRDIAKRLKE 152 >gi|238923911|ref|YP_002937427.1| SsrA-binding protein [Eubacterium rectale ATCC 33656] gi|238875586|gb|ACR75293.1| SsrA-binding protein [Eubacterium rectale ATCC 33656] gi|291524492|emb|CBK90079.1| SsrA-binding protein [Eubacterium rectale DSM 17629] gi|291527917|emb|CBK93503.1| SsrA-binding protein [Eubacterium rectale M104/1] Length = 155 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 PKK++++N+K ++Y ++ +EAGI L GTEVKSLR+ K +I +S+ EN EI L Sbjct: 3 KEPKKLIANNKKVYHDYFLLEKYEAGISLAGTEVKSLRMGKGSIKESFIRIENGEIILYG 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R +KLLL K+EI +L + ++ G T+VP+++YF L K+++ Sbjct: 63 MHITPYEKGNIFNKDPLRPKKLLLHKKEIEKLSSKMKEKGFTIVPVEVYFKGS-LVKVEI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 ALA+GKK YDKR K+D R+ R + N Sbjct: 122 ALAKGKKLYDKRADIAKKDQKREAQRDFKIRN 153 >gi|116629931|ref|YP_815103.1| SsrA-binding protein [Lactobacillus gasseri ATCC 33323] gi|238853249|ref|ZP_04643634.1| SsrA-binding protein [Lactobacillus gasseri 202-4] gi|282851471|ref|ZP_06260836.1| SsrA-binding protein [Lactobacillus gasseri 224-1] gi|311110435|ref|ZP_07711832.1| SsrA-binding protein [Lactobacillus gasseri MV-22] gi|122273131|sp|Q042F7|SSRP_LACGA RecName: Full=SsrA-binding protein gi|116095513|gb|ABJ60665.1| SsrA-binding protein [Lactobacillus gasseri ATCC 33323] gi|238834133|gb|EEQ26385.1| SsrA-binding protein [Lactobacillus gasseri 202-4] gi|282557439|gb|EFB63036.1| SsrA-binding protein [Lactobacillus gasseri 224-1] gi|311065589|gb|EFQ45929.1| SsrA-binding protein [Lactobacillus gasseri MV-22] Length = 151 Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 68/151 (45%), Positives = 99/151 (65%), Gaps = 4/151 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N Sbjct: 1 MKQKAD---NLIAQNKKANHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIINGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL KREI RL + GM ++P+K+Y G Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKREIARLAGIQAQQGMAIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ + + QGKK YDKR+T KKRD DR+ HR Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147 >gi|227889642|ref|ZP_04007447.1| SsrA-binding protein [Lactobacillus johnsonii ATCC 33200] gi|227849785|gb|EEJ59871.1| SsrA-binding protein [Lactobacillus johnsonii ATCC 33200] Length = 151 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 99/151 (65%), Gaps = 4/151 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ N+KA ++Y I + EAGI LTGTE+KS+R ++N+ D Y N Sbjct: 1 MKQKVD---NLIAQNKKASHDYFIKETLEAGIALTGTEIKSIRARRINLRDGYVQIVNGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL K+EI RL + GM ++P+K+Y G Sbjct: 58 AFLENVHISEYKEGNRYNHDPLRSRRLLLHKKEIARLAGIQAQQGMAIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ + + QGKK YDKR+T KKRD DR+ HR Sbjct: 117 AKVLIGVGQGKKQYDKRQTIKKRDQDREIHR 147 >gi|222475549|ref|YP_002563966.1| small protein B-like protein (smpB) [Anaplasma marginale str. Florida] gi|254995352|ref|ZP_05277542.1| SsrA-binding protein [Anaplasma marginale str. Mississippi] gi|254773053|sp|B9KH06|SSRP_ANAMF RecName: Full=SsrA-binding protein gi|222419687|gb|ACM49710.1| small protein B-like protein (smpB) [Anaplasma marginale str. Florida] Length = 149 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 73/145 (50%), Positives = 108/145 (74%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +V++NRKAR++Y +++ ++AG+VL G+EVKSLR KVN+ D+Y ++ E+W+ N +I E Sbjct: 3 IVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y +++R NH P R RKLLL KREIH++ ++ G+ +VP+ I+FN KG+AKI +A+ +G Sbjct: 63 YNRSDRKNHKPLRVRKLLLRKREIHKIAGNIKVSGLAVVPLMIFFNNKGIAKIKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K RDW R+K RI R Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147 >gi|260171051|ref|ZP_05757463.1| SsrA-binding protein [Bacteroides sp. D2] gi|315919371|ref|ZP_07915611.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693246|gb|EFS30081.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 150 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 99/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ + ++ G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKFQREMKNPGFTIVPVRLFINEKGLAKLVIALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150 >gi|239998780|ref|ZP_04718704.1| SsrA-binding protein [Neisseria gonorrhoeae 35/02] gi|240014303|ref|ZP_04721216.1| SsrA-binding protein [Neisseria gonorrhoeae DGI18] gi|240016738|ref|ZP_04723278.1| SsrA-binding protein [Neisseria gonorrhoeae FA6140] gi|240080930|ref|ZP_04725473.1| SsrA-binding protein [Neisseria gonorrhoeae FA19] gi|240112711|ref|ZP_04727201.1| SsrA-binding protein [Neisseria gonorrhoeae MS11] gi|240115456|ref|ZP_04729518.1| SsrA-binding protein [Neisseria gonorrhoeae PID18] gi|240117751|ref|ZP_04731813.1| SsrA-binding protein [Neisseria gonorrhoeae PID1] gi|240121866|ref|ZP_04734828.1| SsrA-binding protein [Neisseria gonorrhoeae PID24-1] gi|240123307|ref|ZP_04736263.1| SsrA-binding protein [Neisseria gonorrhoeae PID332] gi|240125555|ref|ZP_04738441.1| SsrA-binding protein [Neisseria gonorrhoeae SK-92-679] gi|240128008|ref|ZP_04740669.1| SsrA-binding protein [Neisseria gonorrhoeae SK-93-1035] gi|67461227|sp|Q5F816|SSRP_NEIG1 RecName: Full=SsrA-binding protein Length = 148 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL + EI++L R G T+VP+ ++F+ +G K+++ LA+G Sbjct: 63 PTASTHIKPDAVRPRKLLLKQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146 >gi|167763353|ref|ZP_02435480.1| hypothetical protein BACSTE_01727 [Bacteroides stercoris ATCC 43183] gi|167698647|gb|EDS15226.1| hypothetical protein BACSTE_01727 [Bacteroides stercoris ATCC 43183] Length = 150 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 98/145 (67%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 INIKNKRATFDYELVDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANSELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T++P++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELDKLQRGSKDPGFTIIPVRMFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K++D R R + Sbjct: 126 KKQYDKREALKEKDDKRDMARAFKR 150 >gi|307298911|ref|ZP_07578713.1| SsrA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915336|gb|EFN45721.1| SsrA-binding protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 147 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 67/141 (47%), Positives = 97/141 (68%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K V N+KAR+ YH++ S+EAGI L GTEVKSLR+ ++ D+Y E+ EI+L + I Sbjct: 2 KTVVTNKKARFQYHLMDSYEAGIELVGTEVKSLRLGGASLIDAYCKIESGEIFLVDCNIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N +NH PRR R+LL+ ++EI RL + G+T++P+KIYFN KG AK+++ LA+ Sbjct: 62 LYTHGNVWNHEPRRKRRLLMHRKEILRLDQKTKEKGLTIIPLKIYFNDKGKAKVEICLAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKH 152 GK+ +DKRE KRD +R+ Sbjct: 122 GKRLFDKREDIAKRDVERRMR 142 >gi|238650880|ref|YP_002916736.1| SsrA-binding protein [Rickettsia peacockii str. Rustic] gi|259511429|sp|C4K287|SSRP_RICPU RecName: Full=SsrA-binding protein gi|238624978|gb|ACR47684.1| SsrA-binding protein [Rickettsia peacockii str. Rustic] Length = 152 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 101/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA + Y I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAHNKKALFQYFIEERLEAGIVLKGSEVRSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRE+ K++DW R + R++R+ Sbjct: 125 KGKKLHDKRESIKEKDWKRDQSRLIRQK 152 >gi|78189129|ref|YP_379467.1| SsrA-binding protein [Chlorobium chlorochromatii CaD3] gi|123579753|sp|Q3ARF1|SSRP_CHLCH RecName: Full=SsrA-binding protein gi|78171328|gb|ABB28424.1| SsrA-binding protein [Chlorobium chlorochromatii CaD3] Length = 157 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 102/159 (64%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS + + + +V NRKAR+ + I+ +F AGI L G+EVKS+R+ + ++++S+A Sbjct: 1 MSKQPQQRYAEAIV--NRKARHEFEIIETFVAGIQLAGSEVKSVRLGQASLNESFAIILR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E+WL N I Y +R+RKLLL K+EI +L A V G+TLVP+K +F Sbjct: 59 NEVWLENMQITPYKHNRMEVLEAKRSRKLLLHKKEIAKLQAKVSEKGLTLVPLKAFFTPH 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 GL KI+LA+A+GKK YDKRET K R+ R ++ ++++ Sbjct: 119 GLLKIELAIARGKKLYDKRETLKNRENQRHLDQLRKQYS 157 >gi|257066264|ref|YP_003152520.1| SsrA-binding protein [Anaerococcus prevotii DSM 20548] gi|256798144|gb|ACV28799.1| SsrA-binding protein [Anaerococcus prevotii DSM 20548] Length = 147 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA ++Y I +EAG+ L G+EVKS++ KV+I +S+ + E+++ ++ Sbjct: 2 KLLANNKKAYHDYFIEEKYEAGLSLLGSEVKSIKKGKVSIKESFISDRKGEMFIYGMHVT 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y QA + P R R+LLL K+EI++L + G T+VP+KIY GL K++LALA+ Sbjct: 62 PYSQAYDKDIDPTRTRRLLLHKKEINKLIGKKTQAGYTVVPLKIYERD-GLVKLELALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE+ K +D R+ R L+ + Sbjct: 121 GKKQYDKRESIKAKDDKRKMDRALKNY 147 >gi|260911504|ref|ZP_05918092.1| SsrA-binding protein [Prevotella sp. oral taxon 472 str. F0295] gi|260634368|gb|EEX52470.1| SsrA-binding protein [Prevotella sp. oral taxon 472 str. F0295] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 99/159 (62%), Gaps = 3/159 (1%) Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 + + +K V N+KA + Y V +F AGIVLTGTE+KS+R+ K ++ DS+ Sbjct: 1 MGKETDSIRKKSAVQIRNKKASFEYFFVETFMAGIVLTGTEIKSIRLGKASLVDSFCYIN 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E+W+ I Y + NH +R+RKLLL+KREI +L A ++ G T+VP ++ + Sbjct: 61 NGELWVKGMNISPYFYGSFANHEAKRDRKLLLTKREIRKLQEATKQVGFTIVPTLVFIDP 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+AL +GKK YDKR+T K+++ RQ R ++ + Sbjct: 121 HGRAKVDIALVRGKKEYDKRQTLKEKEDRRQMDRAIKRY 159 >gi|158522707|ref|YP_001530577.1| SsrA-binding protein [Desulfococcus oleovorans Hxd3] gi|158511533|gb|ABW68500.1| SsrA-binding protein [Desulfococcus oleovorans Hxd3] Length = 162 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 65/145 (44%), Positives = 100/145 (68%), Gaps = 1/145 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V++N+KAR+++ + FEAG+VLTGTEVKSLR + N+ D+YA +N E++L +I Sbjct: 16 KIVTENKKARHDFFLEDEFEAGMVLTGTEVKSLRGGRANLKDAYAKIKNGELFLYQMHIS 75 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A+ NH P R RKLL+ KRE+ +L + G +L+P+K+YF G AK+ +ALA+ Sbjct: 76 AYSFAHYDNHEPERPRKLLVHKRELKKLIGKINEKGYSLIPVKVYFKG-GKAKVAVALAK 134 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GK+ +DKRE+ K++D R+ R + Sbjct: 135 GKRKFDKRESLKQKDAKRELDRARK 159 >gi|320534590|ref|ZP_08035039.1| SsrA-binding protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133211|gb|EFW25710.1| SsrA-binding protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 178 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 2/147 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFEND 61 + K V+ NRKA ++Y I +EAG+VLTGTEVK+LR+ + ++++++ + Sbjct: 18 KAKAASDAHKTVARNRKATHDYFIEDRYEAGLVLTGTEVKALRMGRASLTEAWIEIDRHG 77 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G Sbjct: 78 EAWLQGAHIPEYLQGTWNNHSPRRKRKLLLHRSELERLKTRVQAKGYTVVPLELYFIG-G 136 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWD 148 AK+++ALA+GK+++DKR+ ++ Sbjct: 137 RAKLEIALARGKQDWDKRQALREAQDK 163 >gi|299140520|ref|ZP_07033658.1| SsrA-binding protein [Prevotella oris C735] gi|298577486|gb|EFI49354.1| SsrA-binding protein [Prevotella oris C735] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 60/144 (41%), Positives = 91/144 (63%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DS+ E+W+ I Y Sbjct: 16 IRNKKASFEYFFVDTYTAGIVLTGTEIKSIRNGKASLVDSFCVLYKGELWVKGMNISPYF 75 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + NH +R+RKLLL+KRE+HRL ++ G T+VP ++ + G AKID+ALA+GKK Sbjct: 76 YGSYSNHVAKRDRKLLLTKRELHRLEEDSKQVGFTIVPTLLFIDRHGRAKIDIALARGKK 135 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR+T +++ R+ R L+ Sbjct: 136 EFDKRQTLREKQDKREMDRALKHF 159 >gi|281423236|ref|ZP_06254149.1| SsrA-binding protein [Prevotella oris F0302] gi|281402572|gb|EFB33403.1| SsrA-binding protein [Prevotella oris F0302] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/144 (40%), Positives = 91/144 (63%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA + Y + ++ AGIVLTGTE+KS+R K ++ DS+ E+W+ I Y Sbjct: 16 IRNKKASFEYFFIDTYTAGIVLTGTEIKSIRNGKASLVDSFCVLYKGELWVKGMNISPYF 75 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + NH +R+RKLLL+KRE+HRL ++ G T+VP ++ + G AKID+ALA+GKK Sbjct: 76 YGSYSNHVAKRDRKLLLTKRELHRLEEDSKQVGFTIVPTLLFIDRHGRAKIDIALARGKK 135 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR+T +++ R+ R L+ Sbjct: 136 EFDKRQTLREKQDKREMDRALKHF 159 >gi|56417184|ref|YP_154258.1| SsrA-binding protein [Anaplasma marginale str. St. Maries] gi|67461309|sp|Q5P9M7|SSRP_ANAMM RecName: Full=SsrA-binding protein gi|56388416|gb|AAV87003.1| small protein B homolog [Anaplasma marginale str. St. Maries] Length = 149 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 74/145 (51%), Positives = 108/145 (74%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +V++NRKAR++Y +++ ++AG+VL G+EVKSLR KVN+ D+Y ++ E+W+ N +I E Sbjct: 3 IVAENRKARFDYFVLQEYDAGMVLVGSEVKSLRQRKVNMGDAYVLEKDMELWIHNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y +A+R NH P R RKLLL KREIH++ ++ G+ +VP+ I+FN KG+AKI +A+ +G Sbjct: 63 YNRADRKNHKPLRVRKLLLRKREIHKIAGNIKVSGLAVVPLMIFFNNKGIAKIKIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K RDW R+K RI R Sbjct: 123 KKLYDKREAIKTRDWQREKSRISRR 147 >gi|260063092|ref|YP_003196172.1| SsrA-binding protein [Robiginitalea biformata HTCC2501] gi|88784661|gb|EAR15831.1| SsrA-binding protein [Robiginitalea biformata HTCC2501] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 105/150 (70%), Gaps = 1/150 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69 K++ NR+AR++Y ++ ++ AGIVL GTE+KS+R K +I++ + F E+ E+++ N Sbjct: 3 KQINIKNRRARFDYELLDTYVAGIVLAGTEIKSIRQGKASIAEGFCEFNEDGELFVINMQ 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + EY + FNH P+ RKLLL+K+E+ +L+ AV+ G T++P+ ++ N +GLAK+ +AL Sbjct: 63 VDEYSHGSHFNHQPKAARKLLLNKQELGKLHKAVKTSGNTIIPLNLFINDRGLAKLRIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKR+T + R+ RQ R+ + N Sbjct: 123 ARGKKQYDKRDTIRARESKRQLDRVKKAFN 152 >gi|329906753|ref|ZP_08274503.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480] gi|327547155|gb|EGF32018.1| tmRNA-binding protein SmpB [Oxalobacteraceae bacterium IMCC9480] Length = 149 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + DNRKA ++Y + FEAG+ L G E KS+R +V + ++Y N+E++L ++I Sbjct: 2 TIVDNRKAFHDYFVEERFEAGLSLQGWEAKSIRAGRVQLKEAYVIVRNNEVFLFGAHISA 61 Query: 73 YLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + + R RKLLL EI ++ V R G TLVP+ +++ G K+++ LA+ Sbjct: 62 LTSTSTHVHPEATRTRKLLLHAAEIKKMIIKVERSGYTLVPINLHYVG-GRIKLEVGLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKR TE+ RD R+ + ++ H Sbjct: 121 GKKQHDKRATERDRDGQREVAQAMKTH 147 >gi|291515120|emb|CBK64330.1| SsrA-binding protein [Alistipes shahii WAL 8301] Length = 153 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 99/151 (65%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + KK+ N++A ++Y I+ + AGIVL GTE+KS+R K ++ D++ F+ E+W+ Sbjct: 2 SEQKKINIRNKRATFDYEILEEYVAGIVLVGTEIKSIRAGKASMVDTFCYFDKGELWVRG 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I EY NH PRR+RKLLL+ RE+ +L A + G+T+V ++++ N +GLAK+ + Sbjct: 62 VNIAEYAWGTCNNHVPRRDRKLLLTARELDKLQRASQDKGLTIVGLRLFLNERGLAKVVV 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+G+K+YDKRE K+ D R+ + ++ + Sbjct: 122 GLARGRKSYDKREYLKENDARREMDKAMKNY 152 >gi|42526972|ref|NP_972070.1| SsrA-binding protein [Treponema denticola ATCC 35405] gi|61216567|sp|Q73MP4|SSRP_TREDE RecName: Full=SsrA-binding protein gi|41817396|gb|AAS11981.1| SsrA-binding protein [Treponema denticola ATCC 35405] gi|325474035|gb|EGC77223.1| SsrA-binding protein [Treponema denticola F0402] Length = 154 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 P K+++ N+KA +NY + E G+VL GTEVKSLR +++ D++A +++E+W+ N Sbjct: 3 KTPVKIIAKNKKAFFNYTVEEKIECGLVLKGTEVKSLREGRISFPDAFAEIKDNEVWVKN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I EY+ ++ FNH P R +KLLL K EI RL V G TLVP++ YF G+ K+ L Sbjct: 63 FHISEYIYSSVFNHDPERPKKLLLKKDEIKRLKRKVEEKGYTLVPLEFYFK-NGIVKVLL 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +GKK +DKR K RD R R ++ Sbjct: 122 GVCKGKKTFDKRADIKDRDIKRDMQREIKIR 152 >gi|304382999|ref|ZP_07365479.1| SsrA-binding protein [Prevotella marshii DSM 16973] gi|304335871|gb|EFM02121.1| SsrA-binding protein [Prevotella marshii DSM 16973] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 96/146 (65%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + NRKA + Y + ++ AGIVLTGTE+KS+R+ K +++D++ N EIW+ + Sbjct: 14 IQIRNRKASFEYFFIDTYTAGIVLTGTEIKSIRMGKASLTDTFCYINNGEIWVKGMNVSP 73 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH +R+RKLLL+KREIH+L A ++ G T+VP ++ + G AK+D+ALA+G Sbjct: 74 YFYGSYNNHESKRDRKLLLNKREIHKLQEATKQVGFTIVPTLVFIDKNGRAKMDIALAKG 133 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR+T K ++ R+ R ++ Sbjct: 134 KKEYDKRQTLKAKEDKREMDRAIKRF 159 >gi|282876947|ref|ZP_06285797.1| SsrA-binding protein [Prevotella buccalis ATCC 35310] gi|281300933|gb|EFA93252.1| SsrA-binding protein [Prevotella buccalis ATCC 35310] Length = 159 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 95/146 (65%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N+KA + Y + ++ AGIVLTGTE+KS+R+ K ++ D++ + EIW+ I Sbjct: 14 IQIRNKKASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYIYHGEIWIKGMNISP 73 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N +R+RKLLL+KREI +L A ++ G T+VP ++ +A G AK+D+ALA+G Sbjct: 74 YFYGSYSNPEAKRDRKLLLTKREIRKLEADLKVAGHTIVPTLVFIDAHGRAKVDIALAKG 133 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR+T K+++ R+ R ++ Sbjct: 134 KKEYDKRQTLKEKEDRREMDRAIKNF 159 >gi|160892164|ref|ZP_02073167.1| hypothetical protein BACUNI_04627 [Bacteroides uniformis ATCC 8492] gi|270296216|ref|ZP_06202416.1| SsrA-binding protein [Bacteroides sp. D20] gi|317480837|ref|ZP_07939918.1| SsrA-binding protein [Bacteroides sp. 4_1_36] gi|156858642|gb|EDO52073.1| hypothetical protein BACUNI_04627 [Bacteroides uniformis ATCC 8492] gi|270273620|gb|EFA19482.1| SsrA-binding protein [Bacteroides sp. D20] gi|316902922|gb|EFV24795.1| SsrA-binding protein [Bacteroides sp. 4_1_36] Length = 150 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 99/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y + ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N ++ E Sbjct: 6 VNIKNKRATFDYELTDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHVAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHNARRERKLLLNKKELEKLMRGTKDPGFTIVPVRLFINEKGLAKLVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKQYDKRESLKEKDDKRDMARMFKR 150 >gi|329960970|ref|ZP_08299249.1| SsrA-binding protein [Bacteroides fluxus YIT 12057] gi|328532256|gb|EGF59060.1| SsrA-binding protein [Bacteroides fluxus YIT 12057] Length = 150 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELEKLTRGSKDPGFTIVPVRMFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKQYDKRESLKEKDDKRDMARMFKR 150 >gi|88607027|ref|YP_505836.1| SsrA-binding protein [Anaplasma phagocytophilum HZ] gi|123494193|sp|Q2GIG5|SSRP_ANAPZ RecName: Full=SsrA-binding protein gi|88598090|gb|ABD43560.1| SsrA-binding protein [Anaplasma phagocytophilum HZ] Length = 149 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 70/145 (48%), Positives = 105/145 (72%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +V++NRK R+NY I+ ++AGIVL G+EVKSLR KV++ D+Y E+W+ N +I E Sbjct: 3 IVAENRKVRFNYTILSEYDAGIVLLGSEVKSLRQHKVSMGDAYVLESGMELWVHNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y +++ NH P R RKLLL +REI+++ +V+ G+T+VP +YFN +GLAK+ +AL +G Sbjct: 63 YNRSSYKNHSPLRVRKLLLRRREINKIAGSVKASGITVVPRLVYFNERGLAKVRIALVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K R+W+R+K R ++ Sbjct: 123 KKLYDKREAIKAREWEREKGRTMKR 147 >gi|294673536|ref|YP_003574152.1| SsrA-binding protein [Prevotella ruminicola 23] gi|294472271|gb|ADE81660.1| SsrA-binding protein [Prevotella ruminicola 23] Length = 160 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 94/142 (66%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA + Y V ++ AGIVLTGTE+KS+R+ K ++ D+Y N E+W+ + Y Sbjct: 16 IRNKKASFEYFFVETYTAGIVLTGTEIKSIRLGKASLVDTYCVVLNGELWVKGMNVSPYF 75 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + NH +R+RKLLL+K+EI L +A ++ G T+VP ++ + KG AK+D+AL +GKK Sbjct: 76 YGSYNNHEAKRDRKLLLTKKEIRALESATKQTGFTIVPTLVFIDDKGRAKVDVALCKGKK 135 Query: 135 NYDKRETEKKRDWDRQKHRILR 156 +DKR+T K+++ R+ R ++ Sbjct: 136 EFDKRQTLKEKEDRREMDRAMK 157 >gi|160883292|ref|ZP_02064295.1| hypothetical protein BACOVA_01261 [Bacteroides ovatus ATCC 8483] gi|156111276|gb|EDO13021.1| hypothetical protein BACOVA_01261 [Bacteroides ovatus ATCC 8483] Length = 150 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVIALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150 >gi|160947538|ref|ZP_02094705.1| hypothetical protein PEPMIC_01472 [Parvimonas micra ATCC 33270] gi|158446672|gb|EDP23667.1| hypothetical protein PEPMIC_01472 [Parvimonas micra ATCC 33270] Length = 155 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 97/153 (63%), Gaps = 1/153 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 R K ++ N+KAR++Y I +E GI L+GTEVKS+R KV+I +SY + +N E+++ Sbjct: 2 RDKTTIKTIASNKKARHDYFIEDIYEVGISLSGTEVKSIRQGKVSIKESYCSIKNGEVFI 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 I Y N +N P R RKLLL+KREI++L + G +L+P+ ++ G K+ Sbjct: 62 LGMNITPYDHGNIYNLEPTRERKLLLNKREINKLIGQTKEKGYSLIPLDVHIK-NGWIKL 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 D+ALA+GKKNYDKR++ +++ +R+ L+ Sbjct: 121 DIALARGKKNYDKRDSMLEKEHERKIQYALKNK 153 >gi|58584341|ref|YP_197914.1| SsrA-binding protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|67461875|sp|Q5GTK2|SSRP_WOLTR RecName: Full=SsrA-binding protein gi|58418657|gb|AAW70672.1| tmRNA-binding protein [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 149 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 78/146 (53%), Positives = 108/146 (73%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V+++NRKAR+ Y I+ FEAG+VL +EVKSLR KVNISD+Y T +N EIWL N +I E Sbjct: 3 VIAENRKARFEYFILEEFEAGMVLLSSEVKSLRERKVNISDAYVTEKNGEIWLHNMHIAE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y AN+ H P+R RKLLL K+EI++L + ++ G+T+VP+ IYFN KGL K +A+ +G Sbjct: 63 YKAANKKKHKPKRERKLLLHKKEINKLISQIKTAGVTIVPLSIYFNDKGLVKTRIAIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR T K+R+W+R K R+ + + Sbjct: 123 KKLYDKRATIKQREWNRAKSRLSKNN 148 >gi|225849335|ref|YP_002729499.1| SsrA-binding protein [Sulfurihydrogenibium azorense Az-Fu1] gi|225643224|gb|ACN98274.1| SsrA-binding protein [Sulfurihydrogenibium azorense Az-Fu1] Length = 152 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 69/145 (47%), Positives = 99/145 (68%), Gaps = 1/145 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA ++Y+I+ +EAGIVLTG+EVKSLR N+ DS+ E+ E WL N YI Sbjct: 4 KVVATNKKAFHDYNILEKYEAGIVLTGSEVKSLREGACNLKDSFVIIEDGEAWLYNCYIA 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A++ H P R RKLLL KREI RL V+ G+T+VP+++YF G AK+++ALA+ Sbjct: 64 PYKPAHKLGHDPYRKRKLLLHKREILRLMGKVKEKGLTIVPLQVYFK-NGKAKVEIALAK 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GK Y+KRE K+++ R+ + + Sbjct: 123 GKVKYEKREDIKEKETRREIEKQFK 147 >gi|160916282|ref|ZP_02078489.1| hypothetical protein EUBDOL_02309 [Eubacterium dolichum DSM 3991] gi|158432006|gb|EDP10295.1| hypothetical protein EUBDOL_02309 [Eubacterium dolichum DSM 3991] Length = 151 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 63/150 (42%), Positives = 94/150 (62%), Gaps = 1/150 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 +KV++ NRKA + Y + FEAGI L GTE+K+LR V + D+Y +F N E ++ Sbjct: 2 SARKVIAFNRKASHEYFLEDRFEAGIQLQGTEIKALRQGHVQLKDAYISFRNHEAFVKEM 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y NRFNH R RKLLL K EI +L V+ G T++P+ +Y KGLAK+++A Sbjct: 62 HITAYAFGNRFNHDETRIRKLLLHKNEILKLEQKVKLKGYTIIPISVYL-EKGLAKMEIA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 LA+GK +DKR +K++D R+ + ++ Sbjct: 121 LAKGKDLHDKRNAQKEKDAKREIEKAMKNR 150 >gi|153807900|ref|ZP_01960568.1| hypothetical protein BACCAC_02186 [Bacteroides caccae ATCC 43185] gi|149129509|gb|EDM20723.1| hypothetical protein BACCAC_02186 [Bacteroides caccae ATCC 43185] Length = 150 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 101/145 (69%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFVKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR+RKLLLS++E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRDRKLLLSRKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150 >gi|295426335|ref|ZP_06818993.1| SsrA-binding protein [Lactobacillus amylolyticus DSM 11664] gi|295063983|gb|EFG54933.1| SsrA-binding protein [Lactobacillus amylolyticus DSM 11664] Length = 151 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 100/154 (64%), Gaps = 4/154 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ NRKAR++Y I + EAGI LTGTE+KS+R ++ + D Y N Sbjct: 1 MKEK---NENLLAQNRKARHDYFIKETLEAGIALTGTEIKSVRARRITLKDGYIQIINGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY Q NR+NH P R+R+LLL K EI RL A G+T++P+K+Y G Sbjct: 58 AFLENVHISEYKQGNRYNHDPLRSRRLLLHKNEIRRLAKAAEERGITIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 AK+ + LAQGKK YDKRET KKRD +R+ R R Sbjct: 117 AKVLIGLAQGKKQYDKRETIKKRDQEREIRRKYR 150 >gi|255037234|ref|YP_003087855.1| SsrA-binding protein [Dyadobacter fermentans DSM 18053] gi|254949990|gb|ACT94690.1| SsrA-binding protein [Dyadobacter fermentans DSM 18053] Length = 152 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 61/144 (42%), Positives = 98/144 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV NR+A + Y + F G+VLTGTE+KS+R KVN D+Y F + E+++ + +I Sbjct: 7 KKVDIKNRRASFEYFFLEEFTTGMVLTGTEIKSIRQGKVNFQDAYCLFMDGELFIRSLHI 66 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + +NH P R+RKLL++KRE +L ++ G+T++P++++ + +GLAK+ +ALA Sbjct: 67 SPYTEGTHYNHEPMRDRKLLITKRERKKLIEGLKDVGLTIIPVRLFTSERGLAKLHIALA 126 Query: 131 QGKKNYDKRETEKKRDWDRQKHRI 154 +GKK YDKR++ K+RD R+ R Sbjct: 127 KGKKLYDKRDSIKERDVKRENDRA 150 >gi|313668089|ref|YP_004048373.1| small protein B homolog [Neisseria lactamica ST-640] gi|313005551|emb|CBN86987.1| small protein B homolog [Neisseria lactamica 020-06] Length = 148 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 90/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R ++V + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAARVQLKESYIYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R RKLLL + EI++L R G T+VP+ ++F +G K+++ LA+G Sbjct: 63 PTASTHIKPDAVRPRKLLLKQSEINKLIGKTERAGYTIVPLDLHF-LRGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146 >gi|288927707|ref|ZP_06421554.1| SsrA-binding protein [Prevotella sp. oral taxon 317 str. F0108] gi|288330541|gb|EFC69125.1| SsrA-binding protein [Prevotella sp. oral taxon 317 str. F0108] Length = 159 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 99/159 (62%), Gaps = 3/159 (1%) Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 + + +K V N+KA + Y V +F AGIVLTGTE+KS+R+ K ++ DS+ Sbjct: 1 MGKETDSIRKKSAVQIRNKKASFEYFFVETFMAGIVLTGTEIKSIRMGKASLVDSFCYIN 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E+W+ I Y + NH +R+RKLLL+KREI +L A ++ G T+VP ++ + Sbjct: 61 NGEMWVKGMNISPYFYGSYANHEAKRDRKLLLTKREIRKLQEATKQVGFTIVPTLVFIDP 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+AL +GKK +DKR+T K+++ RQ R ++ + Sbjct: 121 HGRAKVDIALVRGKKEFDKRQTLKEKEDRRQMDRAIKRY 159 >gi|320106631|ref|YP_004182221.1| SsrA-binding protein [Terriglobus saanensis SP1PR4] gi|319925152|gb|ADV82227.1| SsrA-binding protein [Terriglobus saanensis SP1PR4] Length = 176 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 + + NR A +NY ++ FE G+ L GTEVKS+R K N+ D+Y ++ E +L N++ Sbjct: 26 GDRDAAINRSASHNYFLLDKFECGVALQGTEVKSIREGKANLKDAYGLLKDGEAFLLNAH 85 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I + N NH R R+LLL K+E+ +L + G TL+P ++YF G K +LAL Sbjct: 86 IGPFSHGNLMNHDATRTRRLLLHKQELRKLEVKTNQKGFTLIPTRLYFRG-GKVKCELAL 144 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GK+++DKRE+E+KR+ D++ + Sbjct: 145 AKGKQDWDKRESERKREVDKETRSAIAR 172 >gi|149909300|ref|ZP_01897956.1| SsrA-binding protein [Moritella sp. PE36] gi|149807617|gb|EDM67565.1| SsrA-binding protein [Moritella sp. PE36] Length = 159 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + ++ N+ A + Y I EAG+ L G EVKSLR KVNI++ Y +N Sbjct: 1 MAKK-KPKKSENTIARNKTASFEYKIEDRLEAGLELQGWEVKSLRAGKVNITECYVFIKN 59 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +++ + I + P R RKLLL+KRE+ L + V R G T+V +Y+ Sbjct: 60 GEAFMSGAQIMPLDTASTHVVCNPTRIRKLLLNKRELEVLASKVERQGYTIVATSMYWKQ 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ LA+GKK +DKR K R+W K R+++ Sbjct: 120 -AWVKVNIGLAKGKKEHDKRSDVKDREWKIDKERMMKHK 157 >gi|303235567|ref|ZP_07322174.1| SsrA-binding protein [Prevotella disiens FB035-09AN] gi|302484014|gb|EFL47002.1| SsrA-binding protein [Prevotella disiens FB035-09AN] Length = 159 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 60/144 (41%), Positives = 92/144 (63%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA + Y+ + ++ AGIVLTGTE+KS+R K ++ D++ E+W+ N I Y Sbjct: 16 IRNKKASFEYYFIDTYTAGIVLTGTEIKSIRAGKASLVDTFCFINKGEMWVENMNISPYF 75 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 + NH RR RKLLL+KREI RL + G T+VP ++ + KG AK+D+AL +GKK Sbjct: 76 YGSYSNHEARRKRKLLLNKREIKRLEEESKTPGYTIVPTLVFIDDKGHAKVDIALCRGKK 135 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKR+T K+++ R+ R ++ + Sbjct: 136 EYDKRQTLKEKEDRREMDRAIKNY 159 >gi|237737596|ref|ZP_04568077.1| SsrA-binding protein [Fusobacterium mortiferum ATCC 9817] gi|229419476|gb|EEO34523.1| SsrA-binding protein [Fusobacterium mortiferum ATCC 9817] Length = 150 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ N+KA ++Y I FEAGI L G+EVKS + KV+I +S+ N E+++ I Sbjct: 6 VLAGNKKAYFDYFIEDKFEAGIELVGSEVKSAKAGKVSIKESFIRIINGEVFIMGMSIVP 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL K+EI +L+ V + G T+VP+ I+ + KG K+ +ALA+G Sbjct: 66 WSFGSVYNPEERRVRKLLLHKKEIRKLHEKVTQKGYTIVPLDIHLS-KGYVKVSIALARG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE+ KRD R R+ + Sbjct: 125 KKTYDKRESIAKRDAQRDIQRMTKIR 150 >gi|269119401|ref|YP_003307578.1| SsrA-binding protein [Sebaldella termitidis ATCC 33386] gi|268613279|gb|ACZ07647.1| SsrA-binding protein [Sebaldella termitidis ATCC 33386] Length = 148 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 89/146 (60%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ +E+++ N ++ Y Sbjct: 3 IARNKKAFHDYFIEEKLEAGIELHGTEVKSIKNGKVSIKESFIRIIKNEVFIMNMHVSNY 62 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 N N R RKLLL ++EI +L + G TL+P+ IY + L K+++ LA+GK Sbjct: 63 EFGNINNLPETRVRKLLLHRKEIEKLMGKIAEKGYTLIPLNIYTKNR-LVKVEMGLAKGK 121 Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159 K YDKRE K++D R R +++ N Sbjct: 122 KLYDKREDLKRKDQKRDIERSIKDFN 147 >gi|152997969|ref|YP_001342804.1| SsrA-binding protein [Marinomonas sp. MWYL1] gi|226734258|sp|A6W2E0|SSRP_MARMS RecName: Full=SsrA-binding protein gi|150838893|gb|ABR72869.1| SsrA-binding protein [Marinomonas sp. MWYL1] Length = 159 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS + + ++ N++A+Y+Y + + FEAG+VL+G EVKSLR K + D++ Sbjct: 1 MSKVKKKSTSTGTIALNKRAKYDYFVDQKFEAGLVLSGWEVKSLREGKAQLVDAFVIIHQ 60 Query: 61 DEIWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E WL + P + P R RKLLL+++E+ R+ + G T M +Y+ Sbjct: 61 NEAWLVGARITPLLSASTHVVCEPMRQRKLLLNRKELERIIQVTEQKGKTCAAMALYWKG 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K ++AL GKK +DKR+TE+ RDW R K R+++ + Sbjct: 121 N-KIKCEVALVTGKKEHDKRDTERDRDWSRDKERLMKHN 158 >gi|239787347|emb|CAX83824.1| SsrA-binding protein [uncultured bacterium] Length = 153 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 103/147 (70%), Gaps = 2/147 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND--EIWLTNSY 69 KV++ N+ A+++Y ++ EAGIVLTG EVKS R+ ++I +S+ E++L N+ Sbjct: 4 KVIALNKLAKFDYSLLEVIEAGIVLTGFEVKSARLGGISIRESHVGEMQGSGELYLFNAN 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 PEY+ A P+R RKLLL +R+I++L V R G T++P+++YFN KG+ KI++AL Sbjct: 64 FPEYIHATTMKQEPKRPRKLLLGRRQINKLLGQVHRKGFTIIPVQMYFNEKGIIKIEIAL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156 AQGK DKRET K R+WDR+KHR+L+ Sbjct: 124 AQGKNVVDKRETIKLREWDREKHRVLK 150 >gi|297571767|ref|YP_003697541.1| SsrA-binding protein [Arcanobacterium haemolyticum DSM 20595] gi|296932114|gb|ADH92922.1| SsrA-binding protein [Arcanobacterium haemolyticum DSM 20595] Length = 182 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 93/146 (63%), Gaps = 2/146 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIP 71 V++ N+KAR++Y I FEAG+VL+GTEVK+LR+ + ++++++ + E W+ IP Sbjct: 32 VIARNKKARHDYFIDDVFEAGLVLSGTEVKALRLGRASLTEAWIEIDRSGEAWVVGMNIP 91 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + NH P RKLLL E+ L V+ G T+VP+++YF G AK+++ALA Sbjct: 92 VYAMGSWTNHKPTAKRKLLLHGHELRELGVKVKAKGTTIVPLELYFLG-GRAKLEIALAH 150 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GK+ +DKRET ++R +R R + + Sbjct: 151 GKQEWDKRETLRRRQDERDAQRAMSD 176 >gi|313124448|ref|YP_004034707.1| ssra-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312281011|gb|ADQ61730.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 153 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 2/154 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + V++ NR+AR++Y I ++EAGI LTGTE+KS+R V + D Y N Sbjct: 1 MKQKAKD-ENVLAQNRQARHDYFIKDTYEAGIALTGTEIKSVRARHVTLRDGYVQIINGS 59 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL K+EI +L + GMT+VP+K+Y G Sbjct: 60 AFLENVHIDEYKEGNRYNHDPLRSRRLLLHKKEIAKLAEVKVQKGMTIVPLKVYLK-HGF 118 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 AK+ + +AQGKK YDKRET KKRD DR+ R R Sbjct: 119 AKVLIGVAQGKKEYDKRETIKKRDQDRELRRKYR 152 >gi|325108952|ref|YP_004270020.1| SsrA-binding protein [Planctomyces brasiliensis DSM 5305] gi|324969220|gb|ADY59998.1| SsrA-binding protein [Planctomyces brasiliensis DSM 5305] Length = 165 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 100/146 (68%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V+ NR+AR++Y I+ E GIVL G+EVKS+R S+++I +S+A +N E+WL +I E Sbjct: 17 TVAVNRRARHDYEILDEIECGIVLHGSEVKSIRNSQISIEESFAHTQNGELWLQGCHIGE 76 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y QAN NH PRR+RKLLL ++EI + A ++ G+TLVP+ +YF +GL K+ + +A+G Sbjct: 77 YPQANVMNHIPRRHRKLLLHRKEIRKFAEAAKQKGLTLVPLSVYFR-RGLVKVKVGVARG 135 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 +K +DKR+ KK R+ + ++ Sbjct: 136 RKLHDKRDKLKKDAAQREMKAAMAKN 161 >gi|104774566|ref|YP_619546.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116514687|ref|YP_813593.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300811194|ref|ZP_07091703.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|122274581|sp|Q048G7|SSRP_LACDB RecName: Full=SsrA-binding protein gi|122396965|sp|Q1G8P4|SSRP_LACDA RecName: Full=SsrA-binding protein gi|103423647|emb|CAI98601.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116094002|gb|ABJ59155.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|300497812|gb|EFK32825.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|325125646|gb|ADY84976.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325685484|gb|EGD27579.1| SsrA-binding protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 153 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 101/154 (65%), Gaps = 2/154 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + V++ NR+AR++Y I ++EAGI LTGTE+KS+R V + D Y N Sbjct: 1 MKQKAKD-ENVLAQNRQARHDYFIKDTYEAGIALTGTEIKSVRARHVTLRDGYVQIINGS 59 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY + NR+NH P R+R+LLL K+EI +L + GMT+VP+K+Y G Sbjct: 60 AFLENVHIDEYKEGNRYNHDPLRSRRLLLHKKEIAKLADVKAQKGMTIVPLKVYLK-HGF 118 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 AK+ + +AQGKK YDKRET KKRD DR+ R R Sbjct: 119 AKVLIGVAQGKKEYDKRETIKKRDQDRELRRKYR 152 >gi|110597949|ref|ZP_01386230.1| SsrA-binding protein [Chlorobium ferrooxidans DSM 13031] gi|110340398|gb|EAT58887.1| SsrA-binding protein [Chlorobium ferrooxidans DSM 13031] Length = 157 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 102/158 (64%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + + NRKARY + I+ +F GI L G+EVKS+R+ K +++DS+A Sbjct: 1 MSKKQTTQHYVQAI-QNRKARYEFEILDTFVTGIQLFGSEVKSVRLGKASLNDSFAIILR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 +E+WL N I Y + P+R+RKLLL K EI ++ A + G+TLV +K +F++K Sbjct: 60 NEVWLENMQITPYEHNHLEMLEPKRSRKLLLHKAEILKIQAKITEKGLTLVALKAFFSSK 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL KI++A+A+GKK YDKRET K R+ RQ ++ +++ Sbjct: 120 GLLKIEIAIAKGKKLYDKRETIKARENQRQMEQVRKQY 157 >gi|330998492|ref|ZP_08322315.1| SsrA-binding protein [Paraprevotella xylaniphila YIT 11841] gi|329568320|gb|EGG50130.1| SsrA-binding protein [Paraprevotella xylaniphila YIT 11841] Length = 156 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 100/156 (64%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + N K + N++A +++ ++ + AGIVLTGTE+KS+R K ++ D++ N E Sbjct: 1 MAEKKNKTKSINIKNKRASFDFLLLDKYTAGIVLTGTEIKSIRAGKASLVDTFCFIHNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +W+ N Y+ EY + NH RR+RKLLL+++EI +L ++ G TLVP ++ + G Sbjct: 61 VWVKNMYVAEYSYGSYNNHAARRDRKLLLNRKEIRKLQQEMKSPGFTLVPTLLFIDENGR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+D+ L +GKK YDKR+T K+++ R+ R ++ + Sbjct: 121 AKVDVYLCRGKKEYDKRQTLKEKEDRREIDRQVKRY 156 >gi|296124400|ref|YP_003632178.1| SsrA-binding protein [Planctomyces limnophilus DSM 3776] gi|296016740|gb|ADG69979.1| SsrA-binding protein [Planctomyces limnophilus DSM 3776] Length = 160 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 95/160 (59%), Gaps = 4/160 (2%) Query: 1 MSLKSR---GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ KS+ P V NR+AR+ Y ++ + GIVL G+EVKS+R KV+I +++ Sbjct: 1 MAAKSKPEDDKPNNISVCRNRRARHEYELMDQLDCGIVLMGSEVKSIRAGKVSIEEAWVR 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 ++ E++L I EY QA+ NH +R RKLL +RE+ + +T+VP+++Y Sbjct: 61 VQDGELYLVGCDINEYPQASWLNHETKRTRKLLAHRRELKKFCGRTSERSITIVPLEMYL 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +G KI +ALA+G+K +DKRE K +D R+ ++ R Sbjct: 121 -QRGFVKIKIALAKGRKLHDKREKLKAQDARREIRQVTRR 159 >gi|237715883|ref|ZP_04546364.1| SsrA-binding protein [Bacteroides sp. D1] gi|237722342|ref|ZP_04552823.1| SsrA-binding protein [Bacteroides sp. 2_2_4] gi|262407497|ref|ZP_06084045.1| SsrA-binding protein [Bacteroides sp. 2_1_22] gi|293372003|ref|ZP_06618402.1| SsrA-binding protein [Bacteroides ovatus SD CMC 3f] gi|294646844|ref|ZP_06724465.1| SsrA-binding protein [Bacteroides ovatus SD CC 2a] gi|294808880|ref|ZP_06767609.1| SsrA-binding protein [Bacteroides xylanisolvens SD CC 1b] gi|229443530|gb|EEO49321.1| SsrA-binding protein [Bacteroides sp. D1] gi|229448152|gb|EEO53943.1| SsrA-binding protein [Bacteroides sp. 2_2_4] gi|262354305|gb|EEZ03397.1| SsrA-binding protein [Bacteroides sp. 2_1_22] gi|292633014|gb|EFF51596.1| SsrA-binding protein [Bacteroides ovatus SD CMC 3f] gi|292637789|gb|EFF56186.1| SsrA-binding protein [Bacteroides ovatus SD CC 2a] gi|294443922|gb|EFG12660.1| SsrA-binding protein [Bacteroides xylanisolvens SD CC 1b] Length = 150 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLLSK+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRERKLLLSKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150 >gi|189466576|ref|ZP_03015361.1| hypothetical protein BACINT_02951 [Bacteroides intestinalis DSM 17393] gi|189434840|gb|EDV03825.1| hypothetical protein BACINT_02951 [Bacteroides intestinalis DSM 17393] Length = 150 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 64/145 (44%), Positives = 99/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRMGKASLVDTFCYFANGELWVKNMHISE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHSARRERKLLLTKKELDKLARGAKDPGFTMVPVRMFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K++D R R+ + Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150 >gi|224540345|ref|ZP_03680884.1| hypothetical protein BACCELL_05258 [Bacteroides cellulosilyticus DSM 14838] gi|224518036|gb|EEF87141.1| hypothetical protein BACCELL_05258 [Bacteroides cellulosilyticus DSM 14838] Length = 150 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 64/145 (44%), Positives = 99/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRMGKASLVDTFCYFANGELWVKNMHISE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHSARRERKLLLTKKELDKLARGAKDPGFTMVPIRMFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K++D R R+ + Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150 >gi|120436616|ref|YP_862302.1| SsrA-binding protein [Gramella forsetii KT0803] gi|187611480|sp|A0M3P0|SSRP_GRAFK RecName: Full=SsrA-binding protein gi|117578766|emb|CAL67235.1| SsrA-binding protein [Gramella forsetii KT0803] Length = 157 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 100/146 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + NRKA++NY + + AGI L GTE+K++R K NI++S+ F N E+++ N ++ E Sbjct: 11 INIKNRKAKFNYEFLDKYTAGIKLAGTEIKAIREGKANIAESFCEFNNHELFVINMHVEE 70 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A FNH PR RKLLL +RE+ +L V G+T++P++++ N +GLAK+ ++LA+G Sbjct: 71 YSHATHFNHNPRSQRKLLLQRRELRKLEKEVTNSGLTIIPLRLFINDRGLAKLQISLAKG 130 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRET K R+ R+ RI +E+ Sbjct: 131 KKLYDKRETIKDRESKRRLDRIQKEY 156 >gi|325956173|ref|YP_004286783.1| SsrA-binding protein [Lactobacillus acidophilus 30SC] gi|325332738|gb|ADZ06646.1| SsrA-binding protein [Lactobacillus acidophilus 30SC] Length = 152 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 66/148 (44%), Positives = 99/148 (66%), Gaps = 1/148 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + +++ N+KAR++Y I ++EAGI LTGTE+KS+R ++N+ D Y N +L Sbjct: 2 KKEKDENLIAQNKKARHDYFIKETYEAGIALTGTEIKSVRARRINLRDGYVQIINGSAFL 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY Q NR+NH P R+R+LLL K+EI+RL A G+ ++P+K+Y G AK+ Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEINRLAKAQAERGIAIIPLKVYLK-HGFAKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153 + + QGKK YDKR+T K+RD R+ HR Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIHR 148 >gi|227495729|ref|ZP_03926040.1| tmRNA-binding protein [Actinomyces urogenitalis DSM 15434] gi|226834749|gb|EEH67132.1| tmRNA-binding protein [Actinomyces urogenitalis DSM 15434] Length = 176 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 95/145 (65%), Gaps = 2/145 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEI 63 + K ++ N+KA ++Y I +EAG+ LTGTEVK+LR+ + ++++++ + E Sbjct: 18 KAASDAHKTIARNKKASHDYFIEDRYEAGLSLTGTEVKALRMGRASLTEAWIEIDRHGEA 77 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 WL ++IPEYLQ NH PRR RKLLL + E+ RL V+ G T+VP+++YF G A Sbjct: 78 WLQGAHIPEYLQGTWNNHSPRRKRKLLLHRAELERLAQRVQAKGYTVVPLELYFIG-GRA 136 Query: 124 KIDLALAQGKKNYDKRETEKKRDWD 148 KI++ALA+GK+++DKR+ ++ Sbjct: 137 KIEIALARGKQDWDKRQALREAQDK 161 >gi|53714487|ref|YP_100479.1| SsrA-binding protein [Bacteroides fragilis YCH46] gi|60682510|ref|YP_212654.1| SsrA-binding protein [Bacteroides fragilis NCTC 9343] gi|253564989|ref|ZP_04842445.1| SsrA-binding protein [Bacteroides sp. 3_2_5] gi|255010614|ref|ZP_05282740.1| SsrA-binding protein [Bacteroides fragilis 3_1_12] gi|265766054|ref|ZP_06094095.1| SsrA-binding protein [Bacteroides sp. 2_1_16] gi|313148425|ref|ZP_07810618.1| SsrA-binding protein [Bacteroides fragilis 3_1_12] gi|61216468|sp|Q64RD6|SSRP_BACFR RecName: Full=SsrA-binding protein gi|81314429|sp|Q5LAY7|SSRP_BACFN RecName: Full=SsrA-binding protein gi|52217352|dbj|BAD49945.1| SsrA-binding protein [Bacteroides fragilis YCH46] gi|60493944|emb|CAH08735.1| putative SsrA-binding protein [Bacteroides fragilis NCTC 9343] gi|251946454|gb|EES86831.1| SsrA-binding protein [Bacteroides sp. 3_2_5] gi|263253722|gb|EEZ25187.1| SsrA-binding protein [Bacteroides sp. 2_1_16] gi|301163969|emb|CBW23524.1| putative SsrA-binding protein [Bacteroides fragilis 638R] gi|313137192|gb|EFR54552.1| SsrA-binding protein [Bacteroides fragilis 3_1_12] Length = 150 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 INIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFAKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR+RKLLLSK+E+++L + G T+VP++++ N +GLAK+ +ALA+G Sbjct: 66 YFYGSYNNHAARRDRKLLLSKKELNKLERGTKDAGFTIVPVRLFINERGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K++D R R+ + Sbjct: 126 KKQYDKREALKEKDDRRDMDRMFKR 150 >gi|329769894|ref|ZP_08261293.1| SsrA-binding protein [Gemella sanguinis M325] gi|328837948|gb|EGF87572.1| SsrA-binding protein [Gemella sanguinis M325] Length = 154 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 N +V++ N+KA ++Y I ++EAG+VLTGTE+KS+R +VN+ DSY E+++ N Sbjct: 2 NKESRVIAQNKKASHDYFIEDTYEAGLVLTGTEIKSIRRGRVNLKDSYCQTRRGEMFVYN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + + NRFNH P R RKLLL K++I L A G++++P+K+Y G AK+ + Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIAILTNAQNEAGISIIPLKLYIK-NGYAKLLI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKKNYDKR K+++ +++ +R L++ Sbjct: 121 GVAKGKKNYDKRHVLKQKEANKEINRALKDK 151 >gi|109898059|ref|YP_661314.1| SsrA-binding protein [Pseudoalteromonas atlantica T6c] gi|122972039|sp|Q15V28|SSRP_PSEA6 RecName: Full=SsrA-binding protein gi|109700340|gb|ABG40260.1| SsrA-binding protein [Pseudoalteromonas atlantica T6c] Length = 158 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ N+KAR++Y + EAGI L G EVKS+R KVN+SDSY T E Sbjct: 2 KSKKSKSTNNTIALNKKARHDYILQDKIEAGIELQGWEVKSIRSGKVNLSDSYVTLHKGE 61 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L S I Q ++ P R RKLLL+KRE+ +L +V R G +++ +Y+ K Sbjct: 62 AFLVGSTIQPLNQASSHVVCEPLRQRKLLLNKRELDKLIGSVERQGYSILATAMYWK-KN 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ L +GK +DKR+ K RDW R K R+++ Sbjct: 121 WVKVEIYLGKGKHEHDKRDAVKDRDWARDKERMMKHK 157 >gi|262199989|ref|YP_003271198.1| SsrA-binding protein [Haliangium ochraceum DSM 14365] gi|262083336|gb|ACY19305.1| SsrA-binding protein [Haliangium ochraceum DSM 14365] Length = 162 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 70/161 (43%), Positives = 99/161 (61%), Gaps = 5/161 (3%) Query: 1 MSLKSRGNP----PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56 M+ K+R +V++ NR+A ++Y I EAGIVL G+EVKSLR S +++D++A Sbjct: 1 MAKKNRRQTTIPEGARVLARNRRALHDYEIHDVVEAGIVLVGSEVKSLRDSHAHLNDAHA 60 Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 ++DE WL N+ I EY AN+FNH P R RKLLL K EI RL ++ G TLVP+ +Y Sbjct: 61 EIQSDEAWLINAKIEEYPWANQFNHEPTRRRKLLLHKHEISRLGIKTQQRGFTLVPLAVY 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K++LAL GKK Y+KR ++ + R R L+ Sbjct: 121 LKD-GKIKVELALGSGKKEYEKRNVTRETEAQRDIDRALKR 160 >gi|323343201|ref|ZP_08083432.1| SsrA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463265|gb|EFY08460.1| SsrA-binding protein [Erysipelothrix rhusiopathiae ATCC 19414] Length = 146 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 94/145 (64%), Gaps = 1/145 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 VV+ NRKA + Y I +EAGIVLTGTE+KS+R KV + D++ + N E ++ +I + Sbjct: 3 VVAKNRKAFHEYFIEDRYEAGIVLTGTEIKSVRQGKVQLKDAFISIVNGEAFIKGMHIAQ 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + Q NRFNH R RKLLL + EI +L A + G T+VP+ ++ + +G AK+++A A+G Sbjct: 63 FEQGNRFNHDETRERKLLLHQHEIEKLVKAQQLQGYTIVPLDLHLS-RGRAKLEIATAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 K +DKR+ EK+R R + ++ Sbjct: 122 KHLFDKRQVEKERSIKRDIEKAMKR 146 >gi|302670657|ref|YP_003830617.1| SsrA-binding protein SmpB [Butyrivibrio proteoclasticus B316] gi|302395130|gb|ADL34035.1| SsrA-binding protein SmpB [Butyrivibrio proteoclasticus B316] Length = 159 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + +K+V++N+KA ++Y I +EAGI L GTEVKS+R K +I +++ + + E ++ Sbjct: 8 DKARKLVANNKKAYHDYFIEEKYEAGIELFGTEVKSIRQGKCSIKEAWISIDKGEAFIMG 67 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 + Y + N FN P R +KLLL K EI +L G TLVP+++YF G K+++ Sbjct: 68 MNVSPYEKGNIFNKDPLRVKKLLLHKAEIRKLDQQKMVQGYTLVPLEVYFK-NGKVKVEV 126 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILR 156 LA+GKK YDKR K+D R+ R + Sbjct: 127 GLAKGKKLYDKRADMAKKDQQREALRDYK 155 >gi|298484478|ref|ZP_07002631.1| SsrA-binding protein [Bacteroides sp. D22] gi|299146369|ref|ZP_07039437.1| SsrA-binding protein [Bacteroides sp. 3_1_23] gi|295087568|emb|CBK69091.1| SsrA-binding protein [Bacteroides xylanisolvens XB1A] gi|298269368|gb|EFI10976.1| SsrA-binding protein [Bacteroides sp. D22] gi|298516860|gb|EFI40741.1| SsrA-binding protein [Bacteroides sp. 3_1_23] Length = 150 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFTKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150 >gi|295398255|ref|ZP_06808300.1| SsrA-binding protein [Aerococcus viridans ATCC 11563] gi|294973514|gb|EFG49296.1| SsrA-binding protein [Aerococcus viridans ATCC 11563] Length = 157 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 71/157 (45%), Positives = 102/157 (64%), Gaps = 2/157 (1%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K VV+ NRKA +++ I+ + E G+VLTGTE+KS+R S++N+ D +A E Sbjct: 1 MAKGKKVQKNDDNVVARNRKANHDFTILDTIECGVVLTGTEIKSVRQSRLNLKDGFARIE 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ N +I E+ Q N FNH P R RKLLL K EI +L +R+G TLVP+K+Y Sbjct: 61 RGEVWMYNVHISEFEQGNMFNHDPLRPRKLLLKKAEISKLLKETQREGHTLVPLKVYIK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 +G AK+ L +A+GKK YDKR K++D R+ R L+ Sbjct: 120 RGYAKVLLGVAEGKKKYDKRRALKEKDMKREAQRALK 156 >gi|116074409|ref|ZP_01471671.1| SsrA-binding protein [Synechococcus sp. RS9916] gi|116069714|gb|EAU75466.1| SsrA-binding protein [Synechococcus sp. RS9916] Length = 221 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 50/155 (32%), Positives = 88/155 (56%), Gaps = 2/155 (1%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 ++++DNR AR+ Y I+ + E G+ L GTEVKS+R + N+ D + N ++ Sbjct: 68 KDDKDKPRILADNRFARHQYDILETLETGVELLGTEVKSVRAGQTNLRDGFCLIRNGQMQ 127 Query: 65 LTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 L N +I + A + FNH P R R+LL ++EI++L + + G+TLVP+ ++ Sbjct: 128 LHNVHISPHTHAGSYFNHDPLRVRRLLAHRKEINKLRIELDQKGLTLVPLNLHLKGS-WI 186 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ + L +G+K +DKR EK++ ++ L + Sbjct: 187 KLTIGLCKGRKLHDKRAAEKEKQTKKETRAALSRY 221 >gi|332173390|gb|AEE22644.1| SsrA-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 158 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 89/157 (56%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ N+KAR++Y + EAGI L G EVKS+R KVN+SDSY T E Sbjct: 2 KTKKSKSTNNTIALNKKARHDYILQDKIEAGIELQGWEVKSIRSGKVNLSDSYVTLHKGE 61 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +L S I Q ++ P R RKLLL+KRE+ +L +V R G +++ +Y+ K Sbjct: 62 AFLVGSTIQPLNQASSHVVCEPLRQRKLLLNKRELDKLIGSVERQGYSILATAMYWK-KN 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+++ L +GK +DKR+ K RDW R K R+++ Sbjct: 121 WVKVEIYLGKGKHEHDKRDAVKDRDWARDKERMMKHK 157 >gi|242277685|ref|YP_002989814.1| SsrA-binding protein [Desulfovibrio salexigens DSM 2638] gi|259511418|sp|C6BVR1|SSRP_DESAD RecName: Full=SsrA-binding protein gi|242120579|gb|ACS78275.1| SsrA-binding protein [Desulfovibrio salexigens DSM 2638] Length = 155 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 3/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +P ++ N++AR NY V + EAG+VL GTEVKSLR V+ D Y F+ Sbjct: 1 MAKKKKKSPSS--IALNKQARRNYEFVETLEAGLVLKGTEVKSLRQGLVSFMDGYINFKE 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL +I Y A H P R RKLLL REI +L + V + G+T+VP+++YF+ + Sbjct: 59 GEAWLVGIHIAPYDHAGYTQHEPDRPRKLLLHAREIEKLQSRVEQKGLTVVPVRLYFS-R 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+++ALA+G+ ++++E K+RD R R L + Sbjct: 118 GKIKLEIALAKGRNVHNRKEELKRRDIARDTARQLANY 155 >gi|227879170|ref|ZP_03997044.1| tmRNA-binding protein [Lactobacillus crispatus JV-V01] gi|256844760|ref|ZP_05550244.1| SsrA-binding protein [Lactobacillus crispatus 125-2-CHN] gi|256850626|ref|ZP_05556051.1| SsrA-binding protein [Lactobacillus crispatus MV-1A-US] gi|262047930|ref|ZP_06020874.1| SsrA-binding protein [Lactobacillus crispatus MV-3A-US] gi|293382019|ref|ZP_06627978.1| SsrA-binding protein [Lactobacillus crispatus 214-1] gi|295692312|ref|YP_003600922.1| ssra-binding protein [Lactobacillus crispatus ST1] gi|312977851|ref|ZP_07789597.1| SsrA-binding protein [Lactobacillus crispatus CTV-05] gi|227861237|gb|EEJ68882.1| tmRNA-binding protein [Lactobacillus crispatus JV-V01] gi|256613122|gb|EEU18327.1| SsrA-binding protein [Lactobacillus crispatus 125-2-CHN] gi|256712494|gb|EEU27490.1| SsrA-binding protein [Lactobacillus crispatus MV-1A-US] gi|260571763|gb|EEX28340.1| SsrA-binding protein [Lactobacillus crispatus MV-3A-US] gi|290921420|gb|EFD98463.1| SsrA-binding protein [Lactobacillus crispatus 214-1] gi|295030418|emb|CBL49897.1| SsrA-binding protein [Lactobacillus crispatus ST1] gi|310895158|gb|EFQ44226.1| SsrA-binding protein [Lactobacillus crispatus CTV-05] Length = 152 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 66/148 (44%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y N + WL Sbjct: 2 KKEKEDNLIAQNKKARHDYFIKETLEAGIALTGTEIKSVRARRINLRDGYVQIVNGQAWL 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY Q NR+NH P R+R+LLL K+EI RL A G+ ++P+K+Y G AK+ Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEIARLAKAQSERGIAIIPLKVYLK-HGFAKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153 + + QGKK YDKR+T K+RD R R Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKRDIRR 148 >gi|188997012|ref|YP_001931263.1| SsrA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] gi|229559895|sp|B2V9T6|SSRP_SULSY RecName: Full=SsrA-binding protein gi|188932079|gb|ACD66709.1| SsrA-binding protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 152 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 69/147 (46%), Positives = 99/147 (67%), Gaps = 1/147 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +KVV+ N+KA ++Y I+ +EAGIVLTG+EVKSLR N+ DS+ E+ E WL N Y Sbjct: 2 SEKVVATNKKAFHDYAILEKYEAGIVLTGSEVKSLREGACNLKDSFVMIEDGEAWLYNCY 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y A +F H P R RKLLL K+EI +L V+ G+T+VP+++YF G AK+++AL Sbjct: 62 IAPYKPAAKFGHDPTRKRKLLLHKKEILKLMGKVKEKGLTIVPLRVYFK-NGKAKVEIAL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156 A+GK Y+KRE K++D R+ + + Sbjct: 121 AKGKVKYEKREAMKEKDMKREIEKSFK 147 >gi|258406134|ref|YP_003198876.1| SsrA-binding protein [Desulfohalobium retbaense DSM 5692] gi|257798361|gb|ACV69298.1| SsrA-binding protein [Desulfohalobium retbaense DSM 5692] Length = 151 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KVV+ NRKAR+ + + EAG+VLTG+EVKSLR +++ D Y F E +L Sbjct: 2 SGIKVVAQNRKARHYFEFIEFIEAGLVLTGSEVKSLRAGRISFKDGYVQFRGGEAFLVGV 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 +I Y A H P + RKLLL +REI L V + G+T+VP K+Y G K++LA Sbjct: 62 HIAHYENAGYAGHDPDQPRKLLLHRREIASLRGKVEQKGLTMVPTKVYLK-NGRFKVELA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+GK D+R+ K++ R R + + Sbjct: 121 LARGKNVRDRRQELKQKAIQRDMDREMAK 149 >gi|308233686|ref|ZP_07664423.1| SsrA-binding protein [Atopobium vaginae DSM 15829] gi|328943364|ref|ZP_08240829.1| SsrA-binding protein [Atopobium vaginae DSM 15829] gi|327491333|gb|EGF23107.1| SsrA-binding protein [Atopobium vaginae DSM 15829] Length = 172 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 91/156 (58%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +R +++ NR A ++Y + + EAGI LTG EVKSLR ++D + N+E Sbjct: 11 KGARKQATFHLIAKNRSAYHDYDLDNAEEAGIELTGVEVKSLRERSCQLTDCFCIVRNNE 70 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L +I Y +N P R R+LL+ K++I + V+ G++LVP++IYFN + Sbjct: 71 LYLVGLHIHPYSHGGVWNIDPDRRRRLLMHKKQILSIARRVQTKGVSLVPLEIYFNERNR 130 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ +A+ +GKK YDKR KRD DR+ R+L+ Sbjct: 131 VKVKVAVGRGKKMYDKRAAAAKRDSDREIQRVLKAR 166 >gi|237751765|ref|ZP_04582245.1| ssrA RNA-binding protein [Helicobacter bilis ATCC 43879] gi|229373131|gb|EEO23522.1| ssrA RNA-binding protein [Helicobacter bilis ATCC 43879] Length = 151 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 96/146 (65%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA ++Y I+ EAG+VL G+EVKSLR + N+ DS+ N+E ++ ++ + Sbjct: 4 IIRNKKAYHDYFILEQIEAGLVLAGSEVKSLRNGRANLKDSFVRIINNEAFVFGMHLTYH 63 Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 N F +R RKLLL K++I +L+ V + G+ +VP++++FN KG AK+ +ALA+G Sbjct: 64 HTTNPYFKPDEKRPRKLLLHKKQIDKLFGQVSQKGLAIVPLQVHFNKKGYAKMLIALAKG 123 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRET K+++ DR+ ++ H Sbjct: 124 KKEYDKRETIKRKELDREARANMKNH 149 >gi|317130202|ref|YP_004096484.1| SsrA-binding protein [Bacillus cellulosilyticus DSM 2522] gi|315475150|gb|ADU31753.1| SsrA-binding protein [Bacillus cellulosilyticus DSM 2522] Length = 155 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 74/146 (50%), Positives = 99/146 (67%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR++YHI ++EAG+VLTGTE+KSLR + N+ DS+A N E+WL N +I Sbjct: 6 KLIAQNKKARHDYHIEETYEAGMVLTGTEIKSLRNGRGNLKDSFARVSNGEVWLHNMHIS 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLL+ K+EI +L R G TLVP+KIY G AK L L + Sbjct: 66 PYEQGNRYNHDPVRTRKLLMHKKEIDKLIGLTREKGYTLVPLKIYIK-NGFAKTLLGLGK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK YDKRE KK+D R+ R ++ Sbjct: 125 GKKKYDKREDLKKKDAKREIQRAFKD 150 >gi|71281025|ref|YP_270492.1| SsrA-binding protein [Colwellia psychrerythraea 34H] gi|123631389|sp|Q47XH8|SSRP_COLP3 RecName: Full=SsrA-binding protein gi|71146765|gb|AAZ27238.1| SsrA-binding protein [Colwellia psychrerythraea 34H] Length = 162 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 94/160 (58%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++ N+KAR+NY + FE G+ L G E+KS+R KVNISD Y ++ Sbjct: 1 MAKKKSKSSNSNTIALNKKARHNYSLTDKFEGGMSLQGWEIKSIRSGKVNISDCYVHIKD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I ++ P R+RKLLL++RE+ ++ AAV RDG +L+ +Y+ A Sbjct: 61 REAYLLGAEISPLNAASSHVVCDPNRDRKLLLNRRELDKIIAAVERDGYSLIATAMYWKA 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K++ L +GKK++DKR K R+W K R+++ N Sbjct: 121 -CWVKLEFYLGKGKKDHDKRSDIKDREWAVDKGRLMKNKN 159 >gi|294053707|ref|YP_003547365.1| SsrA-binding protein [Coraliomargarita akajimensis DSM 45221] gi|293613040|gb|ADE53195.1| SsrA-binding protein [Coraliomargarita akajimensis DSM 45221] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + + + N KA +NY + FEAG+ L GTEVK++R I +S+ E Sbjct: 1 MCAKKKSSDDRYREIRNAKATHNYFVGEKFEAGMQLLGTEVKAIRDGNAQIGESFCRIEK 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 ++WL NS+I EY N NH PRR RKLLL +REI++L A+ G TLVP++IY Sbjct: 61 GQVWLYNSHIGEYKFGNFQNHQPRRKRKLLLHRREINKLIGAIEAGGKTLVPLRIYMK-H 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 GL KI++AL QGKK +DKRET K++ R+ R +R Sbjct: 120 GLIKIEIALCQGKKLHDKRETLKRKVAMREAERDMRSR 157 >gi|218130425|ref|ZP_03459229.1| hypothetical protein BACEGG_02014 [Bacteroides eggerthii DSM 20697] gi|317473906|ref|ZP_07933186.1| SsrA-binding protein [Bacteroides eggerthii 1_2_48FAA] gi|217987426|gb|EEC53756.1| hypothetical protein BACEGG_02014 [Bacteroides eggerthii DSM 20697] gi|316909983|gb|EFV31657.1| SsrA-binding protein [Bacteroides eggerthii 1_2_48FAA] Length = 150 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 99/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T++P++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELDKLQRGSKDPGFTMIPVRLFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K++D R R+ + Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150 >gi|15834967|ref|NP_296726.1| SsrA-binding protein [Chlamydia muridarum Nigg] gi|270285141|ref|ZP_06194535.1| SsrA-binding protein [Chlamydia muridarum Nigg] gi|270289163|ref|ZP_06195465.1| SsrA-binding protein [Chlamydia muridarum Weiss] gi|301336536|ref|ZP_07224738.1| SsrA-binding protein [Chlamydia muridarum MopnTet14] gi|13878777|sp|Q9PKW3|SSRP_CHLMU RecName: Full=SsrA-binding protein gi|7190389|gb|AAF39209.1| small protein B [Chlamydia muridarum Nigg] Length = 151 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K + NRKA +NY ++ +F+AGIVLTGTE+KSLR N+ D+Y T E WL S I Sbjct: 4 KEIVSNRKAFHNYEVLETFDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSSIA 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N NH RR RKLLL K E+ +L + V + G+T++P+ +F+ KG K+ + + Sbjct: 64 PYRFGNINNHEERRKRKLLLHKYELQKLDSRVSQKGLTIIPLSFFFS-KGFVKVRIGCCR 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK++DKR+ +R+ +R+ ++ Sbjct: 123 GKKSHDKRQALIEREKNRELAAAMKR 148 >gi|296126626|ref|YP_003633878.1| SsrA-binding protein [Brachyspira murdochii DSM 12563] gi|296018442|gb|ADG71679.1| SsrA-binding protein [Brachyspira murdochii DSM 12563] Length = 159 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 109/160 (68%), Gaps = 4/160 (2%) Query: 1 MSLKSRGNPP---KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M+ K + ++ N+KA +NY ++ +FEAGIVL GTEVKSLR VN++DSYA+ Sbjct: 1 MAKKDKKGNNTISSGEITKNKKALFNYELIETFEAGIVLLGTEVKSLRERSVNMADSYAS 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 F+ E+++ N +I Y NR NH P R RKLL+ KRE+ RLY ++ G+TL+P K+YF Sbjct: 61 FKKGELFIVNMHISPYHFGNRNNHEPLRERKLLMKKRELKRLYGKIKEQGLTLIPAKLYF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+G K++LALA+GKK +DKRET K++ DR+ R ++ Sbjct: 121 -ARGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIKR 159 >gi|315037690|ref|YP_004031258.1| SsrA-binding protein [Lactobacillus amylovorus GRL 1112] gi|312275823|gb|ADQ58463.1| SsrA-binding protein [Lactobacillus amylovorus GRL 1112] gi|327182977|gb|AEA31424.1| SsrA-binding protein [Lactobacillus amylovorus GRL 1118] Length = 152 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 1/148 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + +++ N+KAR++Y I ++EAGI LTGTE+KS+R ++N+ D Y N +L Sbjct: 2 KKEKDENLIAQNKKARHDYFIKETYEAGIALTGTEIKSVRARRINLRDGYVQIINGSAFL 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY Q NR+NH P R+R+LLL K+EI+RL G+ ++P+K+Y G AK+ Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEINRLAKVQAERGIAIIPLKVYLK-HGFAKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153 + + QGKK YDKR+T K+RD R+ HR Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIHR 148 >gi|329954356|ref|ZP_08295448.1| SsrA-binding protein [Bacteroides clarus YIT 12056] gi|328527624|gb|EGF54617.1| SsrA-binding protein [Bacteroides clarus YIT 12056] Length = 150 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 99/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y +V ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELVDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T++P++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHNARRERKLLLTKKELDKLQRGSKDPGFTMIPVRMFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE K++D R R+ + Sbjct: 126 KKQYDKREALKEKDDKRDMARMFKR 150 >gi|288818903|ref|YP_003433251.1| SsrA-binding protein [Hydrogenobacter thermophilus TK-6] gi|288788303|dbj|BAI70050.1| SsrA-binding protein [Hydrogenobacter thermophilus TK-6] gi|308752490|gb|ADO45973.1| SsrA-binding protein [Hydrogenobacter thermophilus TK-6] Length = 158 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 97/158 (61%), Gaps = 6/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSK-VNISDSYATFE 59 M+ + K +++ N++AR Y ++ ++EAGIVL G+EVK+LR + V+ DS+ E Sbjct: 1 MAKQ----DGKHIIAINKEARAEYELLETYEAGIVLEGSEVKALRSKQTVSFKDSFVRIE 56 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E WL N YI Y A P R RKLLL KREI RL V+ G T++P+ +YF Sbjct: 57 NGEAWLYNLYISPYRYATIKPPDPTRKRKLLLHKREILRLMGKVQERGYTIIPLSLYFK- 115 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+++ALA+GKK +D+RE ++RD RQ R ++E Sbjct: 116 NNRVKVEIALARGKKLHDRREELRERDMRRQLEREIKE 153 >gi|317502891|ref|ZP_07960989.1| SsrA-binding protein [Prevotella salivae DSM 15606] gi|315665997|gb|EFV05566.1| SsrA-binding protein [Prevotella salivae DSM 15606] Length = 159 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 95/159 (59%), Gaps = 3/159 (1%) Query: 3 LKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 + +K V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ DS+ Sbjct: 1 MNKEEQEIRKKSPVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRNGKASLVDSFCVIY 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E+W+ I Y + NH +R+RKLLL+KRE+H+L ++ G T+VP ++ + Sbjct: 61 KGELWVKGMNISPYFYGSYSNHEAKRDRKLLLTKRELHKLEEDSKQIGFTIVPTLLFIDK 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+D+ALA+GKK +DKR+T +++ R+ R L+ Sbjct: 121 HGRAKVDIALAKGKKEFDKRQTLREKQDKREMDRALKHF 159 >gi|293400427|ref|ZP_06644573.1| SsrA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306827|gb|EFE48070.1| SsrA-binding protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 152 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +KV+ NRKA + Y + FEAG+VL GTE+K++R I D+Y +F N+E ++ + Sbjct: 4 GRKVIVFNRKASHEYFLEDRFEAGLVLQGTEIKAIRKGHAQIKDAYISFTNNEAFIKEMH 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 IPEY NRFNH R RKLLL K EI +L V+ G T++P+ +Y KG AK+++AL Sbjct: 64 IPEYEFGNRFNHDETRIRKLLLHKSEIIKLQQKVKLKGYTVIPISLYL-EKGKAKMEIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GK +DKR +K++D R+ + L+ Sbjct: 123 AKGKDLHDKRNVQKEKDAKREIEKALKN 150 >gi|325280055|ref|YP_004252597.1| SsrA-binding protein [Odoribacter splanchnicus DSM 20712] gi|324311864|gb|ADY32417.1| SsrA-binding protein [Odoribacter splanchnicus DSM 20712] Length = 149 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 96/148 (64%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P +V N++A ++Y + + AGIVLTGTE+KS+R K ++ DSY F E+W+ + Sbjct: 2 PNEVNIRNKRASFDYEFLEEYNAGIVLTGTEIKSIRAGKASLVDSYCFFNRGELWVKGMH 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY +NH +R RKLLL+ +E+ +L V+ G+T+VP+K++ N KG AK+ +AL Sbjct: 62 IAEYKLGTYYNHEEKRERKLLLTHKELIKLQRKVKESGLTIVPVKVFLNEKGYAKLRIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GKK +DKRE+ K +D + R ++ Sbjct: 122 AKGKKEFDKRESLKLKDAKKDMERAMKR 149 >gi|319902800|ref|YP_004162528.1| SsrA-binding protein [Bacteroides helcogenes P 36-108] gi|319417831|gb|ADV44942.1| SsrA-binding protein [Bacteroides helcogenes P 36-108] Length = 150 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 101/145 (69%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F N E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFANGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L + G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHNARRERKLLLNKKELDKLARETKSPGFTIVPVRMFINEKGLAKVVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKR++ K+++ R R+ ++ Sbjct: 126 KKEYDKRQSLKEKEDKRDMARMFKK 150 >gi|78776642|ref|YP_392957.1| SsrA-binding protein [Sulfurimonas denitrificans DSM 1251] gi|123550751|sp|Q30TF9|SSRP_SULDN RecName: Full=SsrA-binding protein gi|78497182|gb|ABB43722.1| SsrA-binding protein [Sulfurimonas denitrificans DSM 1251] Length = 150 Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y + FEAG+VL G+E+K++R +VN+ DS+ F E +L N++I Sbjct: 5 IAKNKKAYFDYFLEEKFEAGLVLKGSEIKAIRAGRVNLKDSFIRFVQGEAFLFNAHIGRL 64 Query: 74 LQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + F + R +RKLLL K++I ++ AV +DG T+VP+++YFN + + KI +A+A+G Sbjct: 65 ETTHHFYAHEERGSRKLLLHKKQIQKMIKAVEKDGYTVVPLQLYFNDRNIVKIQIAIAKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K+ +DKR K++D R R ++++ Sbjct: 125 KQLHDKRNDLKEKDMKRDMERSMKDY 150 >gi|255692247|ref|ZP_05415922.1| SsrA-binding protein [Bacteroides finegoldii DSM 17565] gi|260622112|gb|EEX44983.1| SsrA-binding protein [Bacteroides finegoldii DSM 17565] Length = 150 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 62/145 (42%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELIDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFAKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR RKLLL+K+E+ +L ++ G T+VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRERKLLLNKKELEKLQREMKNPGFTIVPVRLFINEKGLAKLVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKEYDKRESIKEKDDRRDMARMFKR 150 >gi|312131220|ref|YP_003998560.1| ssra-binding protein [Leadbetterella byssophila DSM 17132] gi|311907766|gb|ADQ18207.1| SsrA-binding protein [Leadbetterella byssophila DSM 17132] Length = 148 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 62/146 (42%), Positives = 98/146 (67%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K V N+KA + Y + + AG+VLTGTE+KS+R +KV+++D+Y F E+++ N Sbjct: 2 KLQKTVNIKNKKASFEYFFLDEYTAGMVLTGTEIKSIREAKVSMADAYCIFHRGELFVKN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I +Y +NH P R RKLLLS++E+ +L + G+T++P +++ N +GLAK+D+ Sbjct: 62 LNISKYDNGTYYNHDPLRERKLLLSRKELRKLEGKLTDKGLTIIPTRLFINDRGLAKLDI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHR 153 ALA+GKK YDKRE+ K++D R + R Sbjct: 122 ALAKGKKLYDKRESIKEKDIKRDQER 147 >gi|326793870|ref|YP_004311690.1| SsrA-binding protein [Marinomonas mediterranea MMB-1] gi|326544634|gb|ADZ89854.1| SsrA-binding protein [Marinomonas mediterranea MMB-1] Length = 160 Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 2/146 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS-YIP 71 ++ N++AR++Y + + FEAG+ L+G EVKSLR K + DSY +E WL + P Sbjct: 14 TIALNKRARHDYFVDQKFEAGLALSGWEVKSLREGKAQLVDSYVIIHQNEAWLIGARITP 73 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLL++REI R+ + G T M +Y+ K ++AL Sbjct: 74 LLSASTHVVCEPLRQRKLLLNRREIDRIIQITEQKGKTCAAMALYWKGN-KIKCEVALVT 132 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK++DKR+T K+RDW R K R+++ Sbjct: 133 GKKDHDKRDTAKERDWARDKERLMKH 158 >gi|15604295|ref|NP_220811.1| SsrA-binding protein [Rickettsia prowazekii str. Madrid E] gi|3334329|sp|O05968|SSRP_RICPR RecName: Full=SsrA-binding protein gi|2073503|emb|CAA72448.1| Small protein [Rickettsia prowazekii] gi|3860987|emb|CAA14887.1| SMALL PROTEIN B HOMOLOG (smpB) [Rickettsia prowazekii] gi|292572044|gb|ADE29959.1| tmRNA-binding protein [Rickettsia prowazekii Rp22] Length = 152 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 100/148 (67%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV+ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A+ E++L N +I Sbjct: 5 KKVIVQNKKALFNYFIEEILEAGIVLKGSEVQSLRQGKASIEESHASDNGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 TEYEKANRFNHSTRRPRKLLLHAKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR K++DW + + R++R+ Sbjct: 125 KGKKLYDKRAAIKEKDWKKDQSRLIRQK 152 >gi|307564679|ref|ZP_07627209.1| SsrA-binding protein [Prevotella amnii CRIS 21A-A] gi|307346607|gb|EFN91914.1| SsrA-binding protein [Prevotella amnii CRIS 21A-A] Length = 159 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 57/155 (36%), Positives = 89/155 (57%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K V N+KA + Y V ++ AGIVLTGTE+KS+R K ++ D++ E+ Sbjct: 5 KQSKKRKVSVQIRNKKASFEYFFVDTYTAGIVLTGTEIKSIRAGKASLVDAFCVINKGEM 64 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 W+ I Y + NH +R RKLLL+K+EI L + + G T++P ++ + G A Sbjct: 65 WVQGMNISPYFYGSYANHEAKRPRKLLLNKKEIRALESDSQAPGYTIIPTLVFIDDNGRA 124 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KI +ALA+GKK YDKR+ K ++ R+ R+ + + Sbjct: 125 KIKIALAKGKKEYDKRQVLKAKEDKREMDRVRKRY 159 >gi|291614096|ref|YP_003524253.1| SsrA-binding protein [Sideroxydans lithotrophicus ES-1] gi|291584208|gb|ADE11866.1| SsrA-binding protein [Sideroxydans lithotrophicus ES-1] Length = 149 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA + Y I EAG++L G EVK++R +V + ++Y ++ ++L S+I Sbjct: 3 IIQNKKAFHEYFIEEKHEAGLMLEGWEVKAIREGRVQLKEAYVLAKDGALYLFGSHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 L + + P R RKLLL K EI +L V+R G T++P+ +++ G K+++ LA+G Sbjct: 63 LNASTHIHPDPVRTRKLLLHKHEIDKLIGKVQRAGYTIMPLDMHYKG-GRVKLEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR TE+++D R+ +++ Sbjct: 122 KKEHDKRATEREKDAKREAASAMKK 146 >gi|228470342|ref|ZP_04055246.1| SsrA-binding protein [Porphyromonas uenonis 60-3] gi|228308085|gb|EEK16960.1| SsrA-binding protein [Porphyromonas uenonis 60-3] Length = 156 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 102/156 (65%), Gaps = 1/156 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + + N++A Y+Y ++ + AGIVL G+E+KS+R K + DSY F + Sbjct: 1 MAKKGKQ-SARAINIRNKRATYDYELLDQYTAGIVLVGSEIKSIRAGKAALVDSYCYFSH 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ N YI EY A+ NH RR RKLLL+++E+ +L ++ G T++P++++ N + Sbjct: 60 GELWIKNMYIAEYSYASYNNHVERRERKLLLNRKELRKLEEEMKNPGQTIIPVRLFINER 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 GLAK+ +ALA+GKK YDKR + + R+ R+ R +R Sbjct: 120 GLAKLVVALARGKKQYDKRASIRDREDKRRLERAMR 155 >gi|224373419|ref|YP_002607791.1| SsrA-binding protein [Nautilia profundicola AmH] gi|254778373|sp|B9L603|SSRP_NAUPA RecName: Full=SsrA-binding protein gi|223588371|gb|ACM92107.1| SsrA-binding protein [Nautilia profundicola AmH] Length = 151 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ NRKA ++Y I +EAGI L G+EVK+LR +VN+ DSY ++ E+W +I Sbjct: 2 KVVATNRKAYHDYDIYDKYEAGIELKGSEVKALRQGRVNLKDSYVRIKDGEVWWLQGHIS 61 Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 F H +R RKLLL K EI +L G TLVP++IYFN + AK+++A+A Sbjct: 62 NLETTYSAFKHDEKRPRKLLLHKNEIAKLAGYTSEKGYTLVPLRIYFNNRNRAKLEIAVA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR K+++ ++ ++ + Sbjct: 122 KGRKLHDKRRVMKEKELKKEAASAMKRY 149 >gi|313900674|ref|ZP_07834167.1| SsrA-binding protein [Clostridium sp. HGF2] gi|312954736|gb|EFR36411.1| SsrA-binding protein [Clostridium sp. HGF2] Length = 151 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 +K+V NRKA + Y + FEAG+VL GTE+KS+R V I D+Y +F NDE ++ + Sbjct: 3 GRKIVVFNRKASHEYFLEERFEAGLVLQGTEIKSIRQGHVQIRDAYISFTNDEAYVKEMH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NRFNH R RKLLL K EI +L V+ G T++P+ +Y KG+AK+++AL Sbjct: 63 ILGYEFGNRFNHDETRIRKLLLHKEEIRKLQQKVKLKGYTVIPISVYL-EKGMAKMEIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GK +DKR +K++D R+ + ++ Sbjct: 122 AKGKDLHDKRNVQKEKDAKREIEKAMKN 149 >gi|309777284|ref|ZP_07672246.1| SsrA-binding protein [Erysipelotrichaceae bacterium 3_1_53] gi|308914964|gb|EFP60742.1| SsrA-binding protein [Erysipelotrichaceae bacterium 3_1_53] Length = 151 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KK++ NRKA + Y + FEAG+VL GTE+KS+R V I D+Y +F NDE ++ + Sbjct: 3 GKKIIVFNRKASHEYFLEERFEAGLVLQGTEIKSIRQGHVQIRDAYISFTNDEAYVKEMH 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y NRFNH R RKLLL K EI +L V+ G T++P+ +Y KG+AK+++AL Sbjct: 63 ILGYAFGNRFNHDETRIRKLLLHKEEIRKLQQKVKLKGYTVIPISVYL-EKGMAKMEIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GK +DKR +K++D R+ + L+ Sbjct: 122 AKGKDLHDKRNAQKEKDAKREIEKALKN 149 >gi|30173369|sp|Q9AKQ2|SSRP_RICMO RecName: Full=SsrA-binding protein gi|13235373|emb|CAC33595.1| Small protein [Rickettsia montanensis] Length = 152 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 70/148 (47%), Positives = 101/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KKV++ N+KA +NY I EAGIVL G+EV+SLR K +I +S+A E++L N +I Sbjct: 5 KKVIAQNKKALFNYFIEERLEAGIVLKGSEVQSLRQGKASIEESHAADTGHEVFLYNCHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +ANRFNH RR RKLLL +EI ++ +R G TLV + +YFN K K++L +A Sbjct: 65 AEYEKANRFNHATRRPRKLLLHTKEIKKIIGRIRIKGYTLVALSMYFNKKNKVKVELGIA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK DKRE+ K+++W R + R++R+ Sbjct: 125 KGKKLRDKRESIKEKNWKRDQSRLIRQK 152 >gi|320450437|ref|YP_004202533.1| SsrA-binding protein [Thermus scotoductus SA-01] gi|320150606|gb|ADW21984.1| SsrA-binding protein [Thermus scotoductus SA-01] Length = 144 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 72/139 (51%), Positives = 98/139 (70%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V +NR+AR++Y I+ ++EAGIVL GTEVKSLR KV+ + S+A FEN E++L N YI Y Sbjct: 4 VLENRRARHDYEILETYEAGIVLKGTEVKSLRAGKVDFTGSFAKFENGELYLENLYIAPY 63 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + + N PRR RKLLL + E++RL V + G+TLVP+KIYFN +G AK+ L LA+GK Sbjct: 64 EKGSYTNVDPRRKRKLLLHRHELNRLRGRVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123 Query: 134 KNYDKRETEKKRDWDRQKH 152 K Y ++E +KKR R Sbjct: 124 KAYQRKEDDKKRAVRRALE 142 >gi|253581794|ref|ZP_04859018.1| SsrA-binding protein [Fusobacterium varium ATCC 27725] gi|251836143|gb|EES64680.1| SsrA-binding protein [Fusobacterium varium ATCC 27725] Length = 146 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KA ++Y I FEAGI L G+EVKS + K++I +S+ N EI++ I Sbjct: 2 ILAGNKKAFFDYFIEDKFEAGIELVGSEVKSAKAGKISIKESFIRIINGEIFIMGMSIVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL K+EI +L+ V + G T+VP+ ++ + KG K+++ALA+G Sbjct: 62 WGFGSVYNPDERRVRKLLLHKKEIKKLHEKVSQKGYTIVPLNVHLS-KGYVKLEIALARG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KKNYDKRE+ K+D +R R+ +E Sbjct: 121 KKNYDKRESLAKKDVERDLQRMAKER 146 >gi|224437885|ref|ZP_03658832.1| SsrA-binding protein [Helicobacter cinaedi CCUG 18818] gi|313144334|ref|ZP_07806527.1| SsrA-binding protein [Helicobacter cinaedi CCUG 18818] gi|313129365|gb|EFR46982.1| SsrA-binding protein [Helicobacter cinaedi CCUG 18818] Length = 155 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K+++ N+KA ++Y I+++ E+GI L G+EVKS+R +VN+ DS+ E++L N++I Sbjct: 3 EKIIAKNKKAFFDYEILQTLESGIALLGSEVKSIRAGRVNLKDSFVRIVRGEVFLFNAHI 62 Query: 71 PEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 F RR RKLLL + EI +L+ +V ++G+++VP+ +Y N + K+ +AL Sbjct: 63 SFLETTFTHFKPNERRERKLLLHRSEIDKLFGSVSKEGLSIVPLSMYLNKRNRIKLSIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKRE+ KK+ +R+ ++++ Sbjct: 123 VRGKKLYDKRESIKKKTLEREARANMKDY 151 >gi|94986669|ref|YP_594602.1| SsrA-binding protein [Lawsonia intracellularis PHE/MN1-00] gi|187611484|sp|Q1MRU5|SSRP_LAWIP RecName: Full=SsrA-binding protein gi|94730918|emb|CAJ54281.1| tmRNA-binding protein [Lawsonia intracellularis PHE/MN1-00] Length = 155 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 88/158 (55%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K +V +NRKAR+ Y ++ EAGIVLTG EVKSLR + DSY F+ Sbjct: 1 MSAKK----NSHLVFENRKARHLYDLLDFLEAGIVLTGPEVKSLRSGHASFQDSYVDFKQ 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E ++ +IP Y A P R RKLLL ++E+ L + V + G+T+VP+K+YF + Sbjct: 57 GEGYIVGLHIPPYNNAGYVIQNPDRPRKLLLHRQELKMLASKVEQKGLTIVPLKLYFKNR 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K ++ALA+G+K YD R KKR R L Sbjct: 117 -KVKTEIALAKGRKLYDHRNELKKRAEAMDIKRELAAR 153 >gi|162447271|ref|YP_001620403.1| SsrA-binding protein [Acholeplasma laidlawii PG-8A] gi|187611490|sp|A9NF97|SSRP_ACHLI RecName: Full=SsrA-binding protein gi|161985378|gb|ABX81027.1| SsrA-binding protein [Acholeplasma laidlawii PG-8A] Length = 149 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 64/145 (44%), Positives = 101/145 (69%), Gaps = 1/145 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA + Y I + F AGI L G+EVKS+R K +I+++Y TF N E+++ N +I Sbjct: 2 KIITQNKKAHFEYFIEQKFVAGIKLQGSEVKSIRAGKCSINEAYITFRNGEVFILNMHIA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 ++ ++ FNH R RKLLL++ EI +L A RDGMT++P+ + + GL K+ +ALA+ Sbjct: 62 KFDASSIFNHEETRTRKLLLNRSEIDKLMGAQTRDGMTIIPLTVELHE-GLIKVVIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKRET K+RD R++ + L+ Sbjct: 121 GKKLFDKRETIKERDIKREQQQSLK 145 >gi|161507017|ref|YP_001576971.1| SsrA-binding protein [Lactobacillus helveticus DPC 4571] gi|260103355|ref|ZP_05753575.1| SsrA-binding protein [Lactobacillus helveticus DSM 20075] gi|187611482|sp|A8YTT9|SSRP_LACH4 RecName: Full=SsrA-binding protein gi|160348006|gb|ABX26680.1| SsrA-binding protein [Lactobacillus helveticus DPC 4571] gi|260082860|gb|EEW66980.1| SsrA-binding protein [Lactobacillus helveticus DSM 20075] gi|323465969|gb|ADX69656.1| SsrA-binding protein [Lactobacillus helveticus H10] gi|328462427|gb|EGF34462.1| SsrA-binding protein [Lactobacillus helveticus MTCC 5463] Length = 152 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 94/148 (63%), Gaps = 1/148 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y +L Sbjct: 2 KKEKDDNLIAQNKKARHDYFIKETVEAGIALTGTEIKSVRARRINLRDGYVQIYGGSAYL 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY Q NR+NH P R+R+LLL K+EI RL A G+ ++P+K+Y G AK+ Sbjct: 62 ENVHISEYKQGNRYNHDPLRSRRLLLHKKEIARLAKAQSERGIAIIPLKVYLK-HGFAKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153 + + QGKK YDKR+T K+RD R+ R Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIRR 148 >gi|146301185|ref|YP_001195776.1| SsrA-binding protein [Flavobacterium johnsoniae UW101] gi|189046827|sp|A5FEB8|SSRP_FLAJO RecName: Full=SsrA-binding protein gi|146155603|gb|ABQ06457.1| SsrA-binding protein [Flavobacterium johnsoniae UW101] Length = 151 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 106/149 (71%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K V N++AR++Y I+ ++ AGIVL GTE+KS+R+ K NI++S+ F E++ N+YI Sbjct: 3 KSVNILNKRARFDYEIIDTYTAGIVLAGTEIKSIRLGKANITESFCEFSGIELFAINTYI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY N+FNH R RKLLL+K+E+ L+ +V+ G+T+VP+K++ N KGLAK+ + L Sbjct: 63 EEYSFGNQFNHKSRSERKLLLNKKELKSLHKSVQAKGLTIVPLKLFTNEKGLAKLQIGLC 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKKNYDKRE+ K++D R RI + +N Sbjct: 123 KGKKNYDKRESLKEQDTKRDLDRIKKAYN 151 >gi|227537411|ref|ZP_03967460.1| tmRNA-binding protein [Sphingobacterium spiritivorum ATCC 33300] gi|227242685|gb|EEI92700.1| tmRNA-binding protein [Sphingobacterium spiritivorum ATCC 33300] Length = 151 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 98/146 (67%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 + N++A + YH++ + AG+ L GTE+KS+R K NI+DS+ F +++ N +I Sbjct: 6 NINIKNKRASFEYHLLDKYVAGLQLLGTEIKSIREGKANINDSFCAFFEKGLYIRNMHIA 65 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY + +NH +R+R+LLL+K+E+ +L A G T+VP++I+ N +G AK+++ALAQ Sbjct: 66 EYSHGSFYNHEAKRDRQLLLTKKELKKLRAKGDEKGFTIVPLRIFVNERGFAKVEIALAQ 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILRE 157 GKK++DKR+T K RD R+ R ++ Sbjct: 126 GKKDFDKRDTIKDRDAKRELDRAMKR 151 >gi|291458622|ref|ZP_06598012.1| SsrA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291419155|gb|EFE92874.1| SsrA-binding protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 156 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K++++N+KA +++ + +E GI L GTEVKSLR+ +I +S+ +E+++ + Sbjct: 5 GCKLIANNKKAWHDFFVDEEYECGIELFGTEVKSLRLGHCSIKESFCQIRGEEVYIKGMH 64 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y + N FN R+R+LLL + EI +L +R G TLVP+++YF + L K+++ L Sbjct: 65 IHPYEKGNLFNRDALRDRRLLLHRSEIRKLSEKIREKGYTLVPLRVYFK-RSLVKVEIGL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKKNYDKRE KKR R+ + + N Sbjct: 124 CRGKKNYDKREDMKKRSQRRELEKEFKRAN 153 >gi|281358319|ref|ZP_06244801.1| SsrA-binding protein [Victivallis vadensis ATCC BAA-548] gi|281315146|gb|EFA99177.1| SsrA-binding protein [Victivallis vadensis ATCC BAA-548] Length = 153 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 63/153 (41%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 R P V++ N+KA +NYHI+ FEAG+ L GTEVKS R + +++ Y T N + W Sbjct: 2 PRQTPADPVLATNKKAFHNYHIIERFEAGVELVGTEVKSCRDRAIVMNEGYVTINNGQAW 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N +I Y NRFNH + R+LLL EI +L + + G T+VP+K Y KGL K Sbjct: 62 LLNVHIAVYGFGNRFNHVATQKRRLLLHHNEILKLAQWLGQKGGTIVPLKFYLK-KGLVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +++A QGK + D+RET ++R D + R ++ Sbjct: 121 VEIAYCQGKTHGDQRETLRRRQSDLEMRRAVKR 153 >gi|241889381|ref|ZP_04776682.1| SsrA-binding protein [Gemella haemolysans ATCC 10379] gi|241863924|gb|EER68305.1| SsrA-binding protein [Gemella haemolysans ATCC 10379] Length = 154 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + KV++ N+KA ++Y I +FEAG+VLTGTE+KS+R ++N+ DSY E+++ N Sbjct: 2 DKEIKVIAQNKKANHDYFIEETFEAGLVLTGTEIKSIRRGRINLKDSYCQTRRGEMFVYN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + + NRFNH P R RKLLL K++I L GM++VP+K+Y G AK+ + Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIASLTNVQNEIGMSIVPLKLYIK-NGYAKLLI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKKNYDKR K+++ +++ +R+L++ Sbjct: 121 GVAKGKKNYDKRHVLKQKEANKEINRVLKDK 151 >gi|166154297|ref|YP_001654415.1| SsrA-binding protein [Chlamydia trachomatis 434/Bu] gi|166155172|ref|YP_001653427.1| SsrA-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335549|ref|ZP_07223793.1| SsrA-binding protein [Chlamydia trachomatis L2tet1] gi|165930285|emb|CAP03771.1| SsrA-binding protein [Chlamydia trachomatis 434/Bu] gi|165931160|emb|CAP06725.1| SsrA-binding protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 151 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K + NRKA ++Y ++ + +AGIVLTGTE+KSLR N+ D+Y T E WL S Sbjct: 2 GVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSS 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N NH RR RKLLL K EIH+L A + + G+T+VP+ +F+ KG K+ + Sbjct: 62 IAPYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTVVPLSFFFS-KGFVKVRIGC 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 +GKK +DKR++ +R+ +R+ ++ Sbjct: 121 CRGKKAHDKRQSIIEREKNRELAAAMKR 148 >gi|319955718|ref|YP_004166985.1| ssra-binding protein [Cellulophaga algicola DSM 14237] gi|319424378|gb|ADV51487.1| SsrA-binding protein [Cellulophaga algicola DSM 14237] Length = 154 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 66/150 (44%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69 KK+ N++AR+++ I+ ++ AG+VL GTE+KS+R+SK +IS+S+ F E E+++ N Sbjct: 4 KKINIKNKRARFDFEILDTYTAGLVLGGTEIKSIRLSKASISESFCEFNERGELFIINMQ 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY FNH P+ RKLLL++ E+ +L V+ G+T++P+ ++ N +GLAKI++ L Sbjct: 64 IDEYSHGTHFNHAPKAQRKLLLNRGELRKLEKEVKNTGLTIIPLNLFLNDRGLAKINIGL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRET K RD + RI + N Sbjct: 124 AKGKKLYDKRETMKDRDNKKDLDRIKKSFN 153 >gi|251771688|gb|EES52263.1| SsrA-binding protein [Leptospirillum ferrodiazotrophum] Length = 170 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 69/162 (42%), Positives = 99/162 (61%), Gaps = 4/162 (2%) Query: 1 MSLKSRG----NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA 56 M+ K + + + VS NRKA + Y ++ FEAGIVL GTEVK++R VN+ D++ Sbjct: 1 MAGKKKDEREADEKARAVSTNRKALFRYEVIERFEAGIVLWGTEVKAIREGSVNLGDAFV 60 Query: 57 TFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 FE +E WL ++ Y NR NH P R RKLLL ++EI RL+ + G+T+VP+ IY Sbjct: 61 RFEKEESWLYQMHVGPYRGGNRENHDPLRVRKLLLHRKEILRLFGLTLQKGLTVVPLGIY 120 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 N + K+ LAL +GK DKRE K+R+ DR+ R+ R + Sbjct: 121 SNNRKKFKVTLALVKGKTQGDKREAIKRREADREISRVFRSN 162 >gi|326797752|ref|YP_004315571.1| SsrA-binding protein [Sphingobacterium sp. 21] gi|326548516|gb|ADZ76901.1| SsrA-binding protein [Sphingobacterium sp. 21] Length = 149 Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 66/144 (45%), Positives = 99/144 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N+KA Y YHI+ + AGI L GTE+KS+R SK NI D++ F ND +++ N +I E Sbjct: 5 INIRNKKAYYEYHILEKYIAGIQLLGTEIKSIRQSKANIGDAFCAFLNDGLYIRNMHIAE 64 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +NH +R+RKLLL+K+E+ +L G T++P+KI+ N +G AK+++ALAQG Sbjct: 65 YSHGSFYNHESKRDRKLLLTKKELAKLKVKGEEKGFTIIPLKIFVNERGYAKVEIALAQG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK+YDKRE+ K+RD R+ R + Sbjct: 125 KKDYDKRESIKERDTKRELSRTYK 148 >gi|157363529|ref|YP_001470296.1| SsrA-binding protein [Thermotoga lettingae TMO] gi|187629776|sp|A8F4Z8|SSRP_THELT RecName: Full=SsrA-binding protein gi|157314133|gb|ABV33232.1| SsrA-binding protein [Thermotoga lettingae TMO] Length = 148 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 71/144 (49%), Positives = 99/144 (68%), Gaps = 1/144 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +V+ N+K R +Y I+ ++EAGI L GTEVKSLR V+ D++ ++EI++ N +I Sbjct: 3 IVATNKKIR-DYEILETYEAGIELKGTEVKSLRERNVSFKDAFCRVRDNEIYMLNLHISP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y ANRFNH P R RKLLL KREI RL + G+TL+P KIYFN GLAK+++AL +G Sbjct: 62 YKFANRFNHDPERPRKLLLHKREIKRLIGKLTTTGLTLIPTKIYFNDHGLAKVEIALVRG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK YDKRE K+++ +R+ L+ Sbjct: 122 KKRYDKREEIKRKEINRKIKTYLK 145 >gi|270265321|ref|ZP_06193582.1| SsrA-binding protein [Serratia odorifera 4Rx13] gi|270040725|gb|EFA13828.1| SsrA-binding protein [Serratia odorifera 4Rx13] Length = 160 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY TF + Sbjct: 1 MTKKKAHKPGSATIAQNKRARFEYFIEEEFEAGLSLQGWEVKSLRAGKANISDSYVTFRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ P R RKLLL KRE+ L V RDG T+V + +Y+ Sbjct: 61 GEAYLFGATVSPLNVASSHVVCDPTRTRKLLLKKRELDSLLGRVNRDGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 AKI + +A+GKK +DKR+ K R+W K RI++ N Sbjct: 120 NAWAKIKIGVAKGKKEHDKRDDIKDREWQTAKSRIMKHAN 159 >gi|149277980|ref|ZP_01884119.1| SsrA-binding protein [Pedobacter sp. BAL39] gi|149231178|gb|EDM36558.1| SsrA-binding protein [Pedobacter sp. BAL39] Length = 149 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 59/144 (40%), Positives = 96/144 (66%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N++A ++YHIV F AG+ L GTE+K++R K N+SD++ F + +++ N +I E Sbjct: 5 IQIKNKRAYFDYHIVEEFNAGLALLGTEIKAIRQGKANMSDAFCMFIGNVLYVRNLHISE 64 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y ++ +H +R+R LLL K+E+ +L A G T+VP++IY N +G AKI +ALAQG Sbjct: 65 YSHSSFHHHDIKRDRILLLHKKELRKLKAKSEEKGYTIVPLRIYTNERGFAKIQIALAQG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKR++ K R+ R+ R ++ Sbjct: 125 KKEFDKRDSIKDRESKREMDRAMK 148 >gi|34557274|ref|NP_907089.1| SsrA-binding protein [Wolinella succinogenes DSM 1740] gi|39932250|sp|Q7M9J0|SSRP_WOLSU RecName: Full=SsrA-binding protein gi|34482990|emb|CAE09989.1| SMALL PROTEIN B HOMOLOG [Wolinella succinogenes] Length = 151 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +KV+++N+KA +++HI+ EAGI L+G+EVK++R +VN+ DS+ E +L N++I Sbjct: 3 RKVIANNKKALFDFHILERLEAGIALSGSEVKAIRAGRVNLKDSFVKIIKGEAFLLNAHI 62 Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 N + RR RKLLL +++I +L +V +GMTLV + IYFN + AK ++AL Sbjct: 63 SYLETTNPHYKPDERRPRKLLLHRKQIDKLTGSVSTEGMTLVTLSIYFNERNRAKAEIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GK +DKRET KKR DR+ L+EH Sbjct: 123 AKGKNLHDKRETLKKRILDREVKAALKEH 151 >gi|329767608|ref|ZP_08259129.1| SsrA-binding protein [Gemella haemolysans M341] gi|328839235|gb|EGF88819.1| SsrA-binding protein [Gemella haemolysans M341] Length = 154 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 63/151 (41%), Positives = 101/151 (66%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 N KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R ++N+ DSY E+++ N Sbjct: 2 NKEIKVIAQNKKANHDYFIEETYEAGLVLTGTEIKSIRRGRINLKDSYCQTRRGEMFVYN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + + NRFNH P R RKLLL K++I L GM++VP+K+Y G AK+ + Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIASLTNVQNEIGMSIVPLKLYIK-NGYAKLLI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKKNYDKR K+++ +++ R+L++ Sbjct: 121 GVAKGKKNYDKRHVLKQKEANKEISRVLKDK 151 >gi|325287546|ref|YP_004263336.1| SsrA-binding protein [Cellulophaga lytica DSM 7489] gi|324323000|gb|ADY30465.1| SsrA-binding protein [Cellulophaga lytica DSM 7489] Length = 154 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 61/150 (40%), Positives = 103/150 (68%), Gaps = 1/150 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE-IWLTNSY 69 KK+ N++AR+ Y ++ ++ AG+VL+GTE+KS+R K +I++S+ F + +++ N Sbjct: 4 KKINIKNKRARFEYELIDTYTAGLVLSGTEIKSIREGKASITESFCEFNDRNELFIINMQ 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + EY + +NH P+ +RKLLL++ E+ +L V+ G+T+VP+ ++ N KGLAKI++AL Sbjct: 64 VDEYSHGSHYNHQPKASRKLLLNRGELKKLEKEVKNTGLTIVPLNMFLNDKGLAKINIAL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK +DKR++ K RD R RI + N Sbjct: 124 AKGKKLHDKRDSIKDRDNKRNLDRIKKSFN 153 >gi|303258078|ref|ZP_07344086.1| SsrA-binding protein [Burkholderiales bacterium 1_1_47] gi|330998709|ref|ZP_08322438.1| SsrA-binding protein [Parasutterella excrementihominis YIT 11859] gi|302859097|gb|EFL82180.1| SsrA-binding protein [Burkholderiales bacterium 1_1_47] gi|329576448|gb|EGG57960.1| SsrA-binding protein [Parasutterella excrementihominis YIT 11859] Length = 152 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KAR++Y I FEAG+ L G EVKS+R +I +++ N E++L N+ I Sbjct: 3 IIQNKKARFDYEIEEKFEAGLELRGWEVKSIRAGGASIKEAHVFVRNGELFLLNANITPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P RNRKLLL K EI RL V + G +L+P+ ++F G K++L L +G Sbjct: 63 KTASTHEKADPTRNRKLLLHKHEIMRLIGRVEQAGYSLIPLDMHFKD-GRVKLELGLGKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK ++KR KR+W R++ R+L+ Sbjct: 122 KKLFEKRADIGKREWKREQGRLLKNR 147 >gi|317152490|ref|YP_004120538.1| SsrA-binding protein [Desulfovibrio aespoeensis Aspo-2] gi|316942741|gb|ADU61792.1| SsrA-binding protein [Desulfovibrio aespoeensis Aspo-2] Length = 158 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 87/159 (54%), Gaps = 3/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P + N++AR Y I+ +FEAGI L G+EVKSLR V D Y F + Sbjct: 1 MAKKKSTTTPD-TIGTNKQARRLYDILETFEAGISLLGSEVKSLRGGHVAFKDGYVQFRD 59 Query: 61 DEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +L +I Y + H P R R+LLL KREI L A + G+T++PMK+YF+ Sbjct: 60 HSAFLVGVHIAPYEKTGEYDQHDPERPRQLLLHKREILVLKAKSDQKGLTVIPMKMYFS- 118 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G K+ + L +GK + +++ K RD R R L +H Sbjct: 119 RGKIKVLIGLGKGKNVHSRKQDLKDRDIARDTARQLADH 157 >gi|313886830|ref|ZP_07820535.1| SsrA-binding protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923720|gb|EFR34524.1| SsrA-binding protein [Porphyromonas asaccharolytica PR426713P-I] gi|332176532|gb|AEE12222.1| SsrA-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 156 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 100/156 (64%), Gaps = 1/156 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + + N++A Y+Y ++ + AGIVL G+E+KS+R K + DSY F Sbjct: 1 MAKKGKQ-SARAINIRNKRATYDYELLDQYTAGIVLVGSEIKSIRAGKAALVDSYCYFSR 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+W+ N YI EY A+ NH RR RKLLL+++E+ +L ++ G T++P++++ N + Sbjct: 60 GELWIKNMYIAEYSYASYNNHVERRERKLLLNRKELRKLEEEMKNPGQTIIPVRLFINER 119 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 GLAK+ +ALA+GKK YDKR + R+ R+ R +R Sbjct: 120 GLAKLVVALARGKKQYDKRAAIRDREDKRRLERAMR 155 >gi|291544215|emb|CBL17324.1| SsrA-binding protein [Ruminococcus sp. 18P13] Length = 154 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 62/153 (40%), Positives = 92/153 (60%), Gaps = 1/153 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K ++ NR+AR+ Y + SFE GIVL GTEVKS+R VN+ DS+ + + E+W+ Sbjct: 2 QQTGLKTIAVNRQARHEYFVQESFETGIVLVGTEVKSIRQGGVNLKDSWCSIDKGELWIK 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y + N FN P R RKLL+ +EI RL ++++G+TL+P+ +YF K+ Sbjct: 62 GMHISPYEKGNIFNTDPLRVRKLLMHHKEIDRLLGTLKQEGLTLIPLSLYFKGS-RVKVQ 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L L +GKK +DKR+ RD R+ R L+ N Sbjct: 121 LGLCKGKKLHDKRDAAAARDAKREIDRALKTRN 153 >gi|323454029|gb|EGB09900.1| hypothetical protein AURANDRAFT_16386 [Aureococcus anophagefferens] Length = 144 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 68/144 (47%), Positives = 89/144 (61%), Gaps = 1/144 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V+ NRKAR++YH+VR+ EAGI LTGTEVKS R + VN+ D +A E +WL N I + Sbjct: 1 VASNRKARFDYHVVRTMEAGIALTGTEVKSCRNNNVNLRDGFARVEGGSVWLHNVDIAPH 60 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 A F H + R+LLL K EI +L + G TLVP+ YFN K L K++LAL +G Sbjct: 61 ATTARYFQHEAKAKRRLLLHKAEIRKLDGELADQGSTLVPLAFYFNDKNLLKVELALCKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 K DKR+ K+RD R RI + Sbjct: 121 KNVRDKRQDIKERDDKRMMQRISK 144 >gi|257470134|ref|ZP_05634226.1| SsrA-binding protein [Fusobacterium ulcerans ATCC 49185] gi|317064357|ref|ZP_07928842.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313690033|gb|EFS26868.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 146 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 95/146 (65%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KA ++Y I FEAGI L G+EVKS + K++I +S+ N EI++ I Sbjct: 2 ILAGNKKAFFDYFIEDKFEAGIELVGSEVKSAKAGKISIKESFIRIINGEIFIMGMSIVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL K+EI +L+ V + G T+VP+ ++ + KG K+++ALA+G Sbjct: 62 WGFGSVYNPDERRVRKLLLHKKEIKKLHEKVSQKGYTIVPLNVHMS-KGYVKLEIALARG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KKNYDKRE+ K+D +R R+ +E Sbjct: 121 KKNYDKRESLAKKDVERDLQRMAKER 146 >gi|305667225|ref|YP_003863512.1| SsrA-binding protein [Maribacter sp. HTCC2170] gi|88708159|gb|EAR00397.1| SsrA-binding protein [Maribacter sp. HTCC2170] Length = 153 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 70/149 (46%), Positives = 103/149 (69%), Gaps = 1/149 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYI 70 + N+KAR+ Y I+ + AGIVL+GTE+KS+R SK +IS+S+ F +N E+++ N I Sbjct: 4 NINIKNKKARFEYEILDKYTAGIVLSGTEIKSIRQSKASISESFCEFNDNGELFIINMQI 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY A+ +NH P+ RKLLL+KRE+ +L V G+T++P+ ++ N +GLAK+++ALA Sbjct: 64 DEYSHASHYNHKPKAERKLLLNKRELKKLQKEVASSGLTIIPLNLFLNERGLAKMNIALA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKRET K RD R RI + N Sbjct: 124 KGKKLYDKRETMKDRDNKRDLDRIKKSFN 152 >gi|167753251|ref|ZP_02425378.1| hypothetical protein ALIPUT_01523 [Alistipes putredinis DSM 17216] gi|167659182|gb|EDS03312.1| hypothetical protein ALIPUT_01523 [Alistipes putredinis DSM 17216] Length = 174 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 102/148 (68%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + N++A ++Y I+ + AGIVL GTE+KS+R+ K +I+DSY F+ E+W+ I Sbjct: 25 KNINIRNKRATFDYEIIEEWIAGIVLVGTEIKSVRLGKASITDSYCYFDKGELWIRGVNI 84 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY NH PRR+RKLLL+++E++++ A++ G+T+V ++++ N +GLAK+ + LA Sbjct: 85 AEYGWGTCNNHVPRRDRKLLLNRKELNKIQRALQDRGLTVVGLRLFLNERGLAKVVVGLA 144 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K YDKRE K+ D R+ + ++++ Sbjct: 145 RGRKAYDKREYLKENDAKREMDKAMKKY 172 >gi|28493168|ref|NP_787329.1| SsrA-binding protein [Tropheryma whipplei str. Twist] gi|39932375|sp|Q83N13|SSRP_TROWT RecName: Full=SsrA-binding protein gi|28476208|gb|AAO44298.1| tmRNA (SsrA)-binding protein [Tropheryma whipplei str. Twist] Length = 211 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 72/154 (46%), Positives = 100/154 (64%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 R P V++ N+ A YNY + ++FEAG+VL G+EVKS+R K+++S++Y +N EIW Sbjct: 18 ERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIW 77 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N YIPE+ NH PRR RKLLL K +I RL + G+TLVP+K YF G AK Sbjct: 78 LANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFR-NGRAK 136 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +ALA+GKK DKRE K+R+ + +R L+ Sbjct: 137 LLIALARGKKLIDKREVIKEREATLEANRALKHR 170 >gi|227894357|ref|ZP_04012162.1| SsrA-binding protein [Lactobacillus ultunensis DSM 16047] gi|227863827|gb|EEJ71248.1| SsrA-binding protein [Lactobacillus ultunensis DSM 16047] Length = 152 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + + +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y N +L Sbjct: 2 KEKKEENLIAQNKKARHDYFIKETVEAGIALTGTEIKSVRARRINLRDGYVQIINGSAFL 61 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I EY Q NR+NH P R+R+LLL K+EI+RL A G+ ++P+K+Y G AK+ Sbjct: 62 ENVHISEYKQGNRYNHEPLRSRRLLLHKKEINRLAKAQAERGIAIIPLKVYLK-HGFAKV 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHR 153 + + QGKK YDKR+T K+RD R+ R Sbjct: 121 LIGVGQGKKEYDKRQTIKERDQKREIRR 148 >gi|309319903|pdb|3IYQ|B Chain B, Tmrna-Smpb: A Journey To The Center Of The Bacterial Ribosome gi|309319905|pdb|3IYR|B Chain B, Tmrna-Smpb: A Journey To The Center Of The Bacterial Ribosome Length = 149 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 71/139 (51%), Positives = 95/139 (68%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y Sbjct: 3 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 62 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK Sbjct: 63 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 122 Query: 134 KNYDKRETEKKRDWDRQKH 152 K Y+KR +KK R Sbjct: 123 KAYEKRREDKKEAVRRALE 141 >gi|76788789|ref|YP_327875.1| SsrA-binding protein [Chlamydia trachomatis A/HAR-13] gi|237802509|ref|YP_002887703.1| SsrA-binding protein [Chlamydia trachomatis B/Jali20/OT] gi|237804425|ref|YP_002888579.1| SsrA-binding protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255348440|ref|ZP_05380447.1| SsrA-binding protein [Chlamydia trachomatis 70] gi|255502982|ref|ZP_05381372.1| SsrA-binding protein [Chlamydia trachomatis 70s] gi|255506652|ref|ZP_05382291.1| SsrA-binding protein [Chlamydia trachomatis D(s)2923] gi|123607187|sp|Q3KMU5|SSRP_CHLTA RecName: Full=SsrA-binding protein gi|76167319|gb|AAX50327.1| small protein B, SsrA-binding protein [Chlamydia trachomatis A/HAR-13] gi|231272725|emb|CAX09629.1| SsrA-binding protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273743|emb|CAX10523.1| SsrA-binding protein [Chlamydia trachomatis B/Jali20/OT] gi|289525121|emb|CBJ14592.1| SsrA-binding protein [Chlamydia trachomatis Sweden2] gi|296434665|gb|ADH16843.1| SsrA-binding protein [Chlamydia trachomatis E/150] gi|296438382|gb|ADH20535.1| SsrA-binding protein [Chlamydia trachomatis E/11023] Length = 151 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K + NRKA ++Y ++ + +AGIVLTGTE+KSLR N+ D+Y T E WL S Sbjct: 2 GVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSS 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N NH RR RKLLL K EIH+L A + + G+T+VP+ +F+ KG K+ + Sbjct: 62 IAPYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTVVPLSFFFS-KGFVKVRIGC 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 +GKK +DKR++ +R+ +R+ ++ Sbjct: 121 CRGKKAHDKRQSIIEREKNRELAAAMKR 148 >gi|29345589|ref|NP_809092.1| SsrA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|253571734|ref|ZP_04849140.1| SsrA-binding protein [Bacteroides sp. 1_1_6] gi|298384510|ref|ZP_06994070.1| SsrA-binding protein [Bacteroides sp. 1_1_14] gi|39932391|sp|Q8ABD1|SSRP_BACTN RecName: Full=SsrA-binding protein gi|29337481|gb|AAO75286.1| SsrA-binding protein [Bacteroides thetaiotaomicron VPI-5482] gi|251838942|gb|EES67027.1| SsrA-binding protein [Bacteroides sp. 1_1_6] gi|298262789|gb|EFI05653.1| SsrA-binding protein [Bacteroides sp. 1_1_14] Length = 150 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 100/145 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A ++Y ++ ++ AGIVLTGTE+KS+R+ K ++ D++ F E+W+ N +I E Sbjct: 6 VNIKNKRATFDYELMDTYTAGIVLTGTEIKSIRLGKASLVDTFCYFAKGELWVKNMHIAE 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + NH RR+RKLLL+K+E+ ++ ++ G T VP++++ N KGLAK+ +ALA+G Sbjct: 66 YFYGSYNNHTARRDRKLLLNKKELEKIQRGMKDPGFTTVPVRLFINEKGLAKLVVALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK YDKRE+ K++D R R+ + Sbjct: 126 KKQYDKRESIKEKDDRRDMARMFKR 150 >gi|28572719|ref|NP_789499.1| SsrA-binding protein [Tropheryma whipplei TW08/27] gi|39932376|sp|Q83NF6|SSRP_TROW8 RecName: Full=SsrA-binding protein gi|28410852|emb|CAD67237.1| ssrA-binding protein [Tropheryma whipplei TW08/27] Length = 211 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 100/154 (64%), Gaps = 1/154 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 R P V++ N+ A YNY + ++FEAG+VL G+EVKS+R K+++S++Y +N EIW Sbjct: 18 ERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIW 77 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L N YIPE+ NH PRR RKLLL K +I RL + G+TLVP+K YF G AK Sbjct: 78 LANLYIPEHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFR-NGRAK 136 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + ++LA+GKK DKRE K+R+ + +R L+ Sbjct: 137 LLISLARGKKLIDKREVIKEREATLEANRALKHR 170 >gi|46198854|ref|YP_004521.1| SsrA-binding protein [Thermus thermophilus HB27] gi|55980871|ref|YP_144168.1| SsrA-binding protein [Thermus thermophilus HB8] gi|30173332|sp|Q8RR57|SSRP_THET8 RecName: Full=SsrA-binding protein gi|61216560|sp|Q72KA1|SSRP_THET2 RecName: Full=SsrA-binding protein gi|28948412|pdb|1J1H|A Chain A, Solution Structure Of A Tmrna-Binding Protein, Smpb, From Thermus Thermophilus gi|19911183|dbj|BAB86918.1| small protein B [Thermus thermophilus] gi|46196477|gb|AAS80894.1| ssrA-binding protein [Thermus thermophilus HB27] gi|55772284|dbj|BAD70725.1| SsrA (tmRNA)-binding protein [Thermus thermophilus HB8] Length = 144 Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 71/139 (51%), Positives = 95/139 (68%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y Sbjct: 4 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 63 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK Sbjct: 64 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123 Query: 134 KNYDKRETEKKRDWDRQKH 152 K Y+KR +KK R Sbjct: 124 KAYEKRREDKKEAVRRALE 142 >gi|169835554|ref|ZP_02868742.1| SsrA-binding protein [candidate division TM7 single-cell isolate TM7a] Length = 149 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ +EI++ N +I Sbjct: 3 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKVSIKESFIRIIRNEIFVMNMHITP 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y N N R RKLLL++REI + ++ G T+VP+ +Y + L K+++ LA+G Sbjct: 63 YEFGNINNVAESRVRKLLLNRREIKKWSEKIQEQGYTIVPISVYTKQR-LVKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE+ K++D +R ++ + Sbjct: 122 KKMHDKRESLKRKDIERDMKKLQKNF 147 >gi|329942798|ref|ZP_08291577.1| ssrA-binding protein [Chlamydophila psittaci Cal10] gi|313847970|emb|CBY16967.1| ssra-binding protein [Chlamydophila psittaci RD1] gi|325506791|gb|ADZ18429.1| ssrA-binding protein [Chlamydophila psittaci 6BC] gi|328815058|gb|EGF85047.1| ssrA-binding protein [Chlamydophila psittaci Cal10] Length = 150 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + NRKA +NY ++ S EAGIVLTGTE+KSLR N+ D+Y T E WL N+ I Sbjct: 3 SKEIVSNRKALHNYEVLESLEAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNASI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + EIH+L V + G+T++P+ ++ + +G K+ L Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYEIHKLEVKVAQKGVTIIPLGMFLS-RGYVKVRLGCC 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK++DKR+T R+ +R+ ++ + Sbjct: 122 RGKKSHDKRQTIIAREKEREIASAMKRY 149 >gi|237744661|ref|ZP_04575142.1| small protein B [Fusobacterium sp. 7_1] gi|229431890|gb|EEO42102.1| small protein B [Fusobacterium sp. 7_1] Length = 148 Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R + +N Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKNNN 147 >gi|309388877|gb|ADO76757.1| SsrA-binding protein [Halanaerobium praevalens DSM 2228] Length = 158 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 5/158 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + +++ N+KAR++++I ++EAGI L GTE+KS+R KVN+ DS+A N Sbjct: 1 MAKKKEID----IIARNKKARHDFYIEETYEAGIKLKGTEIKSIRNHKVNLKDSFALVRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + NR+NH P R RKLLL K EI +L + G TLVP+ +Y K Sbjct: 57 GEVYLHNMHISPYKEGNRYNHRPERRRKLLLHKNEIRKLIGYTTQKGYTLVPLTLYLK-K 115 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + K++LA+A+GK+ +DKR K+ R+ + R Sbjct: 116 NICKVELAVAKGKQQHDKRRDIAKKTAKREMEKAFRRR 153 >gi|297181524|gb|ADI17710.1| tmRNA-binding protein [uncultured Oceanospirillales bacterium HF0130_25G24] Length = 164 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 K + P + N+KAR+++ I +FE+GI L G EVKSLR+ KV + DSY T ++ Sbjct: 6 KAKRKTKAPDTTIVVNKKARHDFFIENTFESGIALQGWEVKSLRLKKVQLVDSYVTLKDG 65 Query: 62 EIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E +L I N P R +KLLL K+E+ +L++A ++ G T V K+Y+ Sbjct: 66 EAFLLGCNISPLNTTNTHTVADPSRTKKLLLHKKELAKLFSATQQKGHTCVCTKMYWKNH 125 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 L K +ALA+GK+++DKR T K R+W+ K RI+R+ N Sbjct: 126 -LIKCQIALAKGKQSHDKRATVKDREWNIDKQRIVRQAN 163 >gi|187250934|ref|YP_001875416.1| SsrA-binding protein [Elusimicrobium minutum Pei191] gi|254778362|sp|B2KCF8|SSRP_ELUMP RecName: Full=SsrA-binding protein gi|186971094|gb|ACC98079.1| SsrA-binding protein [Elusimicrobium minutum Pei191] Length = 157 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + V + NRKA +NYHI+ ++EAGI L G+EVKS+R +V++ ++ E Sbjct: 1 MAKK---DNGPLVAATNRKAYHNYHILDTYEAGIELLGSEVKSIRKKEVSLDGAFVRIEG 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 + ++ N +I Y P R R+LLL+K+EI++L G T++P+++YF Sbjct: 58 MQAYVFNMHINPYKYNTVTEVEPLRQRRLLLNKKEINKLKGHAEIKGHTIIPLEVYFK-N 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AKI + L +GK+ +DKR+ KKRD R+ + + Sbjct: 117 GWAKIKVGLGKGKQLFDKRDAIKKRDLSREMEKDFKNK 154 >gi|150025926|ref|YP_001296752.1| SsrA-binding protein [Flavobacterium psychrophilum JIP02/86] gi|166979670|sp|A6H0S6|SSRP_FLAPJ RecName: Full=SsrA-binding protein gi|149772467|emb|CAL43950.1| SsrA-binding protein [Flavobacterium psychrophilum JIP02/86] Length = 150 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 68/146 (46%), Positives = 106/146 (72%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A++ Y I+ + AG+VLTGTE+KS+R+ K NI++S+ F+ DE+++ NS+I E Sbjct: 5 VNILNKRAKFEYEIIDRYTAGMVLTGTEIKSIRLGKANIAESFCEFQGDELFVINSHIEE 64 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 YL +++NH P+ RKLLL+KRE+ L V+ G+T++P++++ N KG+AK+D+AL +G Sbjct: 65 YLFGHQYNHKPKSERKLLLNKRELKGLLKDVQNKGLTIIPLRLFTNEKGMAKLDIALCKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRET K RD R RI +E Sbjct: 125 KKTFDKRETIKDRDNKRDLDRIKKEF 150 >gi|62185061|ref|YP_219846.1| SsrA-binding protein [Chlamydophila abortus S26/3] gi|81312773|sp|Q5L646|SSRP_CHLAB RecName: Full=SsrA-binding protein gi|62148128|emb|CAH63885.1| ssra-binding protein [Chlamydophila abortus S26/3] Length = 150 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + NRKA +NY ++ S EAGIVLTGTE+KSLR N+ D+Y E WL N+ I Sbjct: 3 SKEIVSNRKALHNYEVLESLEAGIVLTGTEIKSLRDHGGNLGDAYVAISKGEAWLLNASI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + EIH+L V + G+T++P+ ++ + +G K+ L Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYEIHKLEVKVAQKGVTIIPLGMFLS-RGYVKVRLGCC 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK++DKR+T R+ +R+ ++ + Sbjct: 122 RGKKSHDKRQTIIAREKEREIASAMKRY 149 >gi|133919932|emb|CAM12492.1| hypothetical protein [uncultured bacterium] Length = 159 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 86/146 (58%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KAR++Y I FEAG+ L G EVKS+R +I +++ N E++L N+ I Sbjct: 10 IIQNKKARFDYDIAEKFEAGLELRGWEVKSIRAGGASIKEAHVFVRNGELFLLNANITPL 69 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P RNRKLLL K EI RL V + G +L+P+ ++F G K++L L +G Sbjct: 70 KTASTHEKADPTRNRKLLLHKHEIMRLIGRVEQAGYSLIPLDMHFKD-GRVKLELGLGKG 128 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK ++KR KR+W R++ R+L+ Sbjct: 129 KKLFEKRADIGKREWKREQGRLLKNR 154 >gi|91201341|emb|CAJ74401.1| strong similarity to SsrA-binding protein [Candidatus Kuenenia stuttgartiensis] Length = 147 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 70/146 (47%), Positives = 102/146 (69%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ NRKA Y Y ++ E GIVLTGTEVKSLR V+I+DS+A ++ E +L +I E Sbjct: 3 IIAKNRKAFYQYEVLEKIECGIVLTGTEVKSLRNKDVSINDSFAQLDHGEAFLYEMHIGE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y Q NR NH P+R RKLLL KREI ++ V++ G TL+P+ IYF GLAK+++A+A+G Sbjct: 63 YKQGNRQNHEPKRKRKLLLHKREISKIAGKVQQKGYTLIPLSIYFK-NGLAKLEIAIARG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K +DKRE KKR +R+ +++++ Sbjct: 122 KSMFDKREDIKKRTVEREIRQVMKKF 147 >gi|256844947|ref|ZP_05550405.1| SsrA-binding protein [Fusobacterium sp. 3_1_36A2] gi|294785768|ref|ZP_06751056.1| SsrA-binding protein [Fusobacterium sp. 3_1_27] gi|256718506|gb|EEU32061.1| SsrA-binding protein [Fusobacterium sp. 3_1_36A2] gi|294487482|gb|EFG34844.1| SsrA-binding protein [Fusobacterium sp. 3_1_27] Length = 148 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R + +N Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKSNN 147 >gi|221632272|ref|YP_002521493.1| SsrA-binding protein [Thermomicrobium roseum DSM 5159] gi|221156978|gb|ACM06105.1| SsrA-binding protein [Thermomicrobium roseum DSM 5159] Length = 160 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 62/140 (44%), Positives = 90/140 (64%), Gaps = 3/140 (2%) Query: 1 MSL-KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 MS ++ +KV++ NRKA ++Y I EAGI LTG+E+KS+R +VN+ D+YA E Sbjct: 1 MSKGTAKSREGEKVIAVNRKAYHDYFIEEELEAGIQLTGSEIKSIRAGRVNLRDAYARIE 60 Query: 60 NDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E+WL ++ Y + + H P R RKLL+ KRE+ L + + G TLVP+++ Sbjct: 61 DGELWLIGMHVSPYPGASGKHQHDPTRPRKLLVHKRELDYLRGKLEKRGYTLVPLRLVIR 120 Query: 119 AKGLAKIDLALAQGKKNYDK 138 +GLAKIDL LA+GKK YDK Sbjct: 121 -RGLAKIDLGLARGKKQYDK 139 >gi|302338519|ref|YP_003803725.1| SsrA-binding protein [Spirochaeta smaragdinae DSM 11293] gi|301635704|gb|ADK81131.1| SsrA-binding protein [Spirochaeta smaragdinae DSM 11293] Length = 178 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 83/143 (58%), Gaps = 1/143 (0%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 + + K +++NRKAR+ Y I + E GI L GTEVKSLR K + +D+Y E Sbjct: 23 KKEHMDDNGIKQLANNRKARFLYTIEETLECGIELKGTEVKSLRTGKFSFTDAYGKIERG 82 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 + +L +I Y N +NH P RNR+LL KREI +L V G TLVP++ Y G Sbjct: 83 QFYLCGLHISPYAFGNIYNHDPDRNRRLLAHKREIEKLRRKVDEKGFTLVPLRFYLK-HG 141 Query: 122 LAKIDLALAQGKKNYDKRETEKK 144 K+++ L +GKK +DKR+ K+ Sbjct: 142 RVKVEMGLGKGKKLHDKRDAIKQ 164 >gi|282880705|ref|ZP_06289407.1| SsrA-binding protein [Prevotella timonensis CRIS 5C-B1] gi|281305431|gb|EFA97489.1| SsrA-binding protein [Prevotella timonensis CRIS 5C-B1] Length = 160 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 99/160 (61%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKK--VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M K KK + N++A + Y + ++ AGIVLTGTE+KS+R+ K ++ D++ Sbjct: 1 MMNKDEQALRKKSPIQIKNKRASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYI 60 Query: 59 ENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 N EIW+ I Y + NH RR+RKLLL+KREI RL + G T++P+ ++ + Sbjct: 61 NNGEIWVKGMNISPYFYGSFSNHEARRDRKLLLTKREIRRLEIDAKNPGNTILPVLLFID 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 KG AK+D+ LA+GKK YDKR++ K+++ R+ R L+ + Sbjct: 121 QKGRAKVDIVLAKGKKEYDKRQSLKEKEDQREMDRALKHY 160 >gi|58336786|ref|YP_193371.1| SsrA-binding protein [Lactobacillus acidophilus NCFM] gi|227904546|ref|ZP_04022351.1| SsrA-binding protein [Lactobacillus acidophilus ATCC 4796] gi|67461235|sp|Q5FLT4|SSRP_LACAC RecName: Full=SsrA-binding protein gi|58254103|gb|AAV42340.1| ssrA-binding protein [Lactobacillus acidophilus NCFM] gi|227867709|gb|EEJ75130.1| SsrA-binding protein [Lactobacillus acidophilus ATCC 4796] Length = 151 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 65/151 (43%), Positives = 98/151 (64%), Gaps = 4/151 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + +++ N+KAR++Y I + EAGI LTGTE+KS+R ++N+ D Y N Sbjct: 1 MKEKE---ENLIAQNKKARHDYFIKETLEAGIALTGTEIKSVRARRINLRDGYVQIINGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY Q NR+NH P R+R+LLL K+EI+RL G+ ++P+K+Y G Sbjct: 58 AYLENVHISEYKQGNRYNHDPLRSRRLLLHKKEINRLAKVQAERGIAIIPLKVYLK-HGF 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ + + QGKK YDKR+T K+RD R+ R Sbjct: 117 AKVLIGVGQGKKEYDKRQTIKERDQKREIRR 147 >gi|108804440|ref|YP_644377.1| SsrA-binding protein [Rubrobacter xylanophilus DSM 9941] gi|122975962|sp|Q1AVL3|SSRP_RUBXD RecName: Full=SsrA-binding protein gi|108765683|gb|ABG04565.1| SsrA-binding protein [Rubrobacter xylanophilus DSM 9941] Length = 150 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 87/144 (60%), Gaps = 1/144 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 + NRKA +++ I ++EAGI LTG EVKS+R + N+ +SY N E++L ++I Y Sbjct: 5 ARNRKALHDFDIEETYEAGIALTGPEVKSVREGRANLRESYVRVRNGEVFLVGAHISPYK 64 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 A P R+RKLLL ++EI RL + + T++P+++Y GL K+++A+A K+ Sbjct: 65 NATNVPQEPTRDRKLLLHRKEIDRLAGKSQEERKTIIPLRLYPK-NGLVKLEIAVASRKR 123 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 YDKR K+ R+ R ++E Sbjct: 124 QYDKRREIAKKTAQREIERAMKER 147 >gi|291277165|ref|YP_003516937.1| SsrA-binding protein [Helicobacter mustelae 12198] gi|290964359|emb|CBG40209.1| SsrA-binding protein [Helicobacter mustelae 12198] Length = 153 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KA ++Y I+ S EAGIVL G+EVK+LR +VN+ DS+ E+++ ++I Sbjct: 3 IIARNKKAFFDYEILESLEAGIVLLGSEVKALRKGRVNLKDSFVKVVKGEMFMFGAHISY 62 Query: 73 YLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + R RKLLL +R+I RL+ AV + G+++VP+KIYFNA+ AK+++AL + Sbjct: 63 LETTYLYYKPNETRPRKLLLHRRQIDRLFGAVSQQGLSIVPLKIYFNARNHAKLEIALVR 122 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK +DKRE+ K++ +++ ++ + Sbjct: 123 GKNLHDKRESIKRKMLEKEARANMKNY 149 >gi|296327513|ref|ZP_06870059.1| SsrA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155339|gb|EFG96110.1| SsrA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 148 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +++ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKEAFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R + +N Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKSNN 147 >gi|328914639|gb|AEB55472.1| SsrA-binding protein [Chlamydophila psittaci 6BC] Length = 156 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + NRKA +NY ++ S EAGIVLTGTE+KSLR N+ D+Y T E WL N+ I Sbjct: 9 SKEIVSNRKALHNYEVLESLEAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNASI 68 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + EIH+L V + G+T++P+ ++ + +G K+ L Sbjct: 69 APYRFGNIYNHEERRKRKLLLHRYEIHKLEVKVAQKGVTIIPLGMFLS-RGYVKVRLGCC 127 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK++DKR+T R+ +R+ ++ + Sbjct: 128 RGKKSHDKRQTIIAREKEREIASAMKRY 155 >gi|310779454|ref|YP_003967787.1| SsrA-binding protein [Ilyobacter polytropus DSM 2926] gi|309748777|gb|ADO83439.1| SsrA-binding protein [Ilyobacter polytropus DSM 2926] Length = 147 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 94/146 (64%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +++ N+KA + + I +EAGI L G+EVKS++ KV+I +++ N+EI++ + Sbjct: 2 ILAKNKKAFHEFFIDERYEAGIELIGSEVKSIKAGKVSIKEAFVRIINNEIFIMGMSVTP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N +R RKLLL K+EI +L+ V + G T+VP+ +Y KG K+ +ALA+G Sbjct: 62 WAYGSVYNPDEKRVRKLLLHKKEIKKLHENVSQKGCTIVPISVYTK-KGFVKVQIALARG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KKNYDKRE+ KRD RQ R ++E Sbjct: 121 KKNYDKRESLAKRDQQRQMDREIKER 146 >gi|317496545|ref|ZP_07954894.1| SsrA-binding protein [Gemella moribillum M424] gi|316913348|gb|EFV34845.1| SsrA-binding protein [Gemella moribillum M424] Length = 154 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 61/151 (40%), Positives = 101/151 (66%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 N KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R ++N+ DSY E+++ N Sbjct: 2 NKEIKVIAQNKKANHDYFIEDTYEAGLVLTGTEIKSIRRGRINLKDSYCQSRRGEMFVYN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + + NRFNH P R RKLLL K++I L G++++P+K+Y G AK+ + Sbjct: 62 MHISHFEEGNRFNHEPLRVRKLLLKKKQIAVLTNVQNEVGISIIPLKLYIK-NGYAKLLI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +A+GKKNYDKR K+++ ++ +R+L++ Sbjct: 121 GVAKGKKNYDKRHVLKQKEATKEINRVLKDK 151 >gi|260891254|ref|ZP_05902517.1| SsrA-binding protein [Leptotrichia hofstadii F0254] gi|260859281|gb|EEX73781.1| SsrA-binding protein [Leptotrichia hofstadii F0254] Length = 154 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ DE+++ N +I Sbjct: 8 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKVSIKESFIRIIRDEVFVMNMHITP 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y N N R RKLLL++REI + ++ G T+VP+ +Y + L K+++ LA+G Sbjct: 68 YEFGNINNVAESRVRKLLLNRREIKKWSEKIKEQGYTIVPISVYTKQR-LVKMEIGLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE+ K++D DR +I + Sbjct: 127 KKMHDKRESLKRKDIDRDMKKIQKNF 152 >gi|270487281|ref|ZP_06204355.1| SsrA-binding protein [Yersinia pestis KIM D27] gi|270335785|gb|EFA46562.1| SsrA-binding protein [Yersinia pestis KIM D27] Length = 152 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 54/135 (40%), Positives = 77/135 (57%), Gaps = 2/135 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY F+N Sbjct: 5 MTKKKAYKPGSATIAQNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVMFKN 64 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + P R RKLLL+KRE+ L+ V R+G T+V + +Y+ Sbjct: 65 GEAFLFGATITPLNVASTHVVCEPMRTRKLLLNKRELDSLFGRVNREGYTVVALSMYWK- 123 Query: 120 KGLAKIDLALAQGKK 134 K+ + +A+GKK Sbjct: 124 NAWVKVKIGVAKGKK 138 >gi|87301992|ref|ZP_01084826.1| SsrA-binding protein [Synechococcus sp. WH 5701] gi|87283560|gb|EAQ75515.1| SsrA-binding protein [Synechococcus sp. WH 5701] Length = 165 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 90/149 (60%), Gaps = 2/149 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 ++++DNR AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N + Sbjct: 17 SNRLLADNRFARHQYEILETLETGIELVGTEVKSIRAGKANLRDGFGLIRNGELQLHNVH 76 Query: 70 IPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I + A FNH P R RKLL +REI +L A+ + G+TLVP+ ++ K+ L Sbjct: 77 ISPHSHAGAYFNHEPLRTRKLLAHRREIDKLRVALDQKGLTLVPLNLHLKGS-WIKLTLG 135 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILRE 157 LA+G+K +DKR+ E+++D DR+ L Sbjct: 136 LAKGRKLHDKRQEERRKDADREVRSALAR 164 >gi|19703944|ref|NP_603506.1| SsrA-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22096158|sp|Q8RFS8|SSRP_FUSNN RecName: Full=SsrA-binding protein gi|19714118|gb|AAL94805.1| Small protein B [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 148 Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +++ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKEAFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG K+ +A+A+G Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKMQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R + +N Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKNNN 147 >gi|254432363|ref|ZP_05046066.1| SsrA-binding protein [Cyanobium sp. PCC 7001] gi|197626816|gb|EDY39375.1| SsrA-binding protein [Cyanobium sp. PCC 7001] Length = 166 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++DNR AR+ Y I+ + E GI L GTEVKS+R +VN+ D + N E+ L N +I Sbjct: 20 RLLADNRLARHQYEILDTLETGIELLGTEVKSIRAGQVNLRDGFCLIRNGELQLHNVHIS 79 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + A FNH P R RKLL +REI +L A+ + G+TL+P+ ++ K+ L L Sbjct: 80 PHSHAGAYFNHDPLRVRKLLAHRREIDKLRGALDQKGLTLIPLNLHLKGS-WIKVTLGLG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR+ E+++ R+ + + Sbjct: 139 KGRKLHDKRQEERRKQDARETRAAIARY 166 >gi|302878818|ref|YP_003847382.1| SsrA-binding protein [Gallionella capsiferriformans ES-2] gi|302581607|gb|ADL55618.1| SsrA-binding protein [Gallionella capsiferriformans ES-2] Length = 149 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA + Y + +EAG++L G EVK++R + + ++Y T ++ ++L S+I Sbjct: 3 IIQNKKAFHEYFVEDKYEAGLMLEGWEVKAIRAGRAQLKEAYVTAKDGALYLFGSHISPL 62 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 L + + P R RKLLL EI ++ V+R G T++P+ +++ G K+ + LA+G Sbjct: 63 LNASTHIHPDPVRTRKLLLHAAEISKILIKVQRAGYTVMPLDMHYKG-GRVKLAIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR TEK++D R+ + +++ Sbjct: 122 KKLHDKRATEKEKDSKREVAQAMKK 146 >gi|256851443|ref|ZP_05556832.1| SsrA-binding protein [Lactobacillus jensenii 27-2-CHN] gi|260660864|ref|ZP_05861779.1| SsrA-binding protein [Lactobacillus jensenii 115-3-CHN] gi|282933107|ref|ZP_06338494.1| SsrA-binding protein [Lactobacillus jensenii 208-1] gi|297206258|ref|ZP_06923653.1| SsrA-binding protein [Lactobacillus jensenii JV-V16] gi|256616505|gb|EEU21693.1| SsrA-binding protein [Lactobacillus jensenii 27-2-CHN] gi|260548586|gb|EEX24561.1| SsrA-binding protein [Lactobacillus jensenii 115-3-CHN] gi|281302611|gb|EFA94826.1| SsrA-binding protein [Lactobacillus jensenii 208-1] gi|297149384|gb|EFH29682.1| SsrA-binding protein [Lactobacillus jensenii JV-V16] Length = 151 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 70/150 (46%), Positives = 95/150 (63%), Gaps = 1/150 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 N V++ N+KA ++Y I + EAGI LTGTE+KS+R ++ + D Y N +L Sbjct: 2 KNETNNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYLE 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I EY Q N +NH P R R+LLL K+EI +L + GMT++P+K+Y KG AKI Sbjct: 62 NVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEIQAQQGMTIIPLKVYLK-KGFAKIL 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILR 156 L + QGKK YDKRET KKRD +R+ R R Sbjct: 121 LGVGQGKKQYDKRETIKKRDQERELRRKYR 150 >gi|33241681|ref|NP_876622.1| SsrA-binding protein [Chlamydophila pneumoniae TW-183] gi|33236190|gb|AAP98279.1| SmpB [Chlamydophila pneumoniae TW-183] Length = 165 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I Sbjct: 17 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 76 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + E+ +L + + GMTL+P+ + + +G K+ L Sbjct: 77 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMLLS-RGYVKVRLGCC 135 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR T +R+ +R+ ++ Sbjct: 136 RGKKAYDKRRTIIEREKEREVAAAMKRR 163 >gi|42522228|ref|NP_967608.1| SsrA-binding protein [Bdellovibrio bacteriovorus HD100] gi|61216532|sp|Q6MQ46|SSRP_BDEBA RecName: Full=SsrA-binding protein gi|39574759|emb|CAE78601.1| SSRA-binding protein [Bdellovibrio bacteriovorus HD100] Length = 152 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 + +V +N+KAR++Y IV ++EAG+ L G+EVKSLR V + DSY +F+ DE +L N Sbjct: 2 SENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 ++I EY ++ NH P R+RKLL+ + E+ ++ A+R G + VP+KIYF G AK+ + Sbjct: 62 AHIAEYKASSYNNHVPERHRKLLMHRNELDEIFEALREKGYSCVPLKIYFK-NGRAKLQI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AL +GKK +DKRE KKRD Q LR Sbjct: 121 ALVKGKKTHDKREAIKKRDVSDQIRSSLRR 150 >gi|227485030|ref|ZP_03915346.1| tmRNA-binding protein [Anaerococcus lactolyticus ATCC 51172] gi|227237027|gb|EEI87042.1| tmRNA-binding protein [Anaerococcus lactolyticus ATCC 51172] Length = 148 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 97/147 (65%), Gaps = 2/147 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA ++Y I +EAG+ L G+EVKS++ KV+I +++ + + E+++ ++ Sbjct: 4 KLLANNKKAFHDYFIEEKYEAGLELKGSEVKSIKAGKVSIKEAFISDKKGEMFVYGMHVT 63 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y P R RKLLL K+EI++L DG TLVP+K+Y N GL KI++ALA+ Sbjct: 64 PY-MEGFDKIDPTRTRKLLLHKKEINKLVGKKTVDGYTLVPLKVYEN-NGLVKIEIALAK 121 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE+ K++D R+ R L+ + Sbjct: 122 GKKMYDKRESIKRKDDKRRMERALKNY 148 >gi|262067492|ref|ZP_06027104.1| SsrA-binding protein [Fusobacterium periodonticum ATCC 33693] gi|291378854|gb|EFE86372.1| SsrA-binding protein [Fusobacterium periodonticum ATCC 33693] Length = 148 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ N EI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINGEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL K+EI +++ V+ G T+VP+ ++ + KG K+ +A+A+G Sbjct: 62 WEYGSIYNPEERRVRKLLLHKKEIKKIHEQVKIKGYTIVPLDVHLS-KGYVKVQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R L+ +N Sbjct: 121 KKTYDKRESIAKKDQERNIKRDLKINN 147 >gi|218295505|ref|ZP_03496318.1| SsrA-binding protein [Thermus aquaticus Y51MC23] gi|218244137|gb|EED10663.1| SsrA-binding protein [Thermus aquaticus Y51MC23] Length = 144 Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats. Identities = 69/137 (50%), Positives = 93/137 (67%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A F+N E++L N YI Y + Sbjct: 6 ENRRARHDYEILETYEAGIALKGTEVKSLREGKVDFTGSFARFQNGELYLENLYIAPYEK 65 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GKK Sbjct: 66 GSYMNVDPRRPRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGKKA 125 Query: 136 YDKRETEKKRDWDRQKH 152 Y K+ +KK R Sbjct: 126 YQKKLDDKKEAVRRALE 142 >gi|86131949|ref|ZP_01050546.1| SsrA-binding protein [Dokdonia donghaensis MED134] gi|85817771|gb|EAQ38945.1| SsrA-binding protein [Dokdonia donghaensis MED134] Length = 153 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 67/148 (45%), Positives = 98/148 (66%), Gaps = 1/148 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIP 71 V NRKAR+ Y I+ AGIVL GTE+K++R K +I++S+ F + E+++ N + Sbjct: 5 VNIKNRKARFEYEILDRLVAGIVLAGTEIKAIREGKASIAESFCEFNDQGEMFVINMTVQ 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY A FNH P+ RKLLL+KRE+ + V + G+T+VP++++ N KG AK+++ALA+ Sbjct: 65 EYSHATYFNHNPKSERKLLLNKRELKKWEREVNKSGLTIVPLRLFTNEKGFAKLEIALAK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKRET K RD + RI + N Sbjct: 125 GKKTYDKRETIKDRDNKKNLDRIKKAFN 152 >gi|332168953|gb|AEE18208.1| SsrA-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 153 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 65/148 (43%), Positives = 98/148 (66%), Gaps = 1/148 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIP 71 V NR+AR+ Y ++ AGIVL GTE+K++R K +I++S+ F + E+++ N + Sbjct: 5 VNIKNRRARFEYELLDKLVAGIVLAGTEIKAIREGKASIAESFCEFNDHGEMFVINMTVQ 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY A FNH P+ RKLLL+KRE+ + V + G+T+VP++++ N KG AK+++ALA+ Sbjct: 65 EYSHATYFNHQPKNQRKLLLNKRELKKWEREVNKSGLTIVPLRLFTNEKGFAKLEIALAK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GKK YDKRET K RD + RI + N Sbjct: 125 GKKTYDKRETIKDRDNKKNLDRIKKSFN 152 >gi|16752702|ref|NP_444969.1| SsrA-binding protein [Chlamydophila pneumoniae AR39] gi|7189345|gb|AAF38264.1| smpB protein [Chlamydophila pneumoniae AR39] Length = 165 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I Sbjct: 17 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 76 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + E+ +L + + GMTL+P+ + + +G K+ L Sbjct: 77 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMXLS-RGYVKVRLGCC 135 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR T +R+ +R+ ++ Sbjct: 136 RGKKAYDKRRTIIEREKEREVAAAMKRR 163 >gi|257126740|ref|YP_003164854.1| SsrA-binding protein [Leptotrichia buccalis C-1013-b] gi|257050679|gb|ACV39863.1| SsrA-binding protein [Leptotrichia buccalis C-1013-b] Length = 152 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ N+KA ++Y I EAGI L GTEVKS++ KV+I +S+ DE+++ N +I Sbjct: 3 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKVSIKESFIRIIRDEVFVMNMHITP 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y N N R RKLLL++REI + ++ G T+VP+ +Y + L K+++ LA+G Sbjct: 63 YEFGNINNVAESRVRKLLLNRREIKKWSEKIKEQGYTIVPISVYTKQR-LVKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE+ K++D +R ++ + Sbjct: 122 KKMHDKRESLKRKDIERDMKKVQKNF 147 >gi|219128046|ref|XP_002184234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404465|gb|EEC44412.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 160 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 86/158 (54%), Gaps = 3/158 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF--END 61 K + +S NR A NY IV + EAGI L GTEVKS+R K+N+ D Y + Sbjct: 1 KKKNKTRDSTISVNRVAYRNYEIVDTIEAGISLVGTEVKSIRNGKLNLRDGYIRPTKDGR 60 Query: 62 EIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 L N +I ++ QA F H R R LL+ K E + + GMT+VP+K Y+N K Sbjct: 61 SCILYNVHIGKHSQAGAFFQHEETRPRALLVHKAEARKFLQQTEQQGMTIVPLKAYYNDK 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K+ +AL +GK DKR T K+RD R++ RI++ Sbjct: 121 NRVKLQIALCRGKNVRDKRVTIKERDAKREERRIIKSF 158 >gi|320161255|ref|YP_004174479.1| SsrA-binding protein [Anaerolinea thermophila UNI-1] gi|319995108|dbj|BAJ63879.1| SsrA-binding protein [Anaerolinea thermophila UNI-1] Length = 157 Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats. Identities = 64/138 (46%), Positives = 96/138 (69%), Gaps = 6/138 (4%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M++K KVV+ NRKA++ Y ++ +EAGI L G+E+KS+R +V++++++ + Sbjct: 1 MAVK-----NVKVVATNRKAQFEYFLLERYEAGIALQGSEIKSVRAGQVSLAEAFVQVDG 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E WL N++I Y A+RFNH PRR R+LLL KREI L+ AVR G+T+VP+ IY Sbjct: 56 REAWLVNAHIAPYNPASRFNHDPRRPRRLLLHKREILELWNAVRAKGVTVVPVSIYLKE- 114 Query: 121 GLAKIDLALAQGKKNYDK 138 G AK+++A+A+GKK YDK Sbjct: 115 GKAKVEIAIAKGKKLYDK 132 >gi|294501755|ref|YP_003565455.1| tmRNA-binding protein [Bacillus megaterium QM B1551] gi|295707105|ref|YP_003600180.1| tmRNA-binding protein [Bacillus megaterium DSM 319] gi|294351692|gb|ADE72021.1| tmRNA-binding protein [Bacillus megaterium QM B1551] gi|294804764|gb|ADF41830.1| tmRNA-binding protein [Bacillus megaterium DSM 319] Length = 155 Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KAR+++ I ++E GIVL GTE+KS+R +VN+ DS+A +N E++L N ++ Sbjct: 7 KLIAQNKKARHDFFIEETYETGIVLQGTEIKSIRNGRVNLKDSFARVQNGEVFLHNMHVS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLLL KREI +L + G +LVP+K+Y G AK+ L L + Sbjct: 67 PYEQGNRYNHEPLRTRKLLLHKREISKLIGYSKETGYSLVPLKVYLK-NGYAKVLLGLGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K+++ R R R+ Sbjct: 126 GKKKYDKREDLKRKEAKRDIERAFRDR 152 >gi|15604795|ref|NP_219579.1| SsrA-binding protein [Chlamydia trachomatis D/UW-3/CX] gi|255310879|ref|ZP_05353449.1| SsrA-binding protein [Chlamydia trachomatis 6276] gi|255317179|ref|ZP_05358425.1| SsrA-binding protein [Chlamydia trachomatis 6276s] gi|6685979|sp|O84079|SSRP_CHLTR RecName: Full=SsrA-binding protein gi|3328471|gb|AAC67667.1| Small Protein B [Chlamydia trachomatis D/UW-3/CX] gi|296435594|gb|ADH17768.1| SsrA-binding protein [Chlamydia trachomatis G/9768] gi|296436518|gb|ADH18688.1| SsrA-binding protein [Chlamydia trachomatis G/11222] gi|296437454|gb|ADH19615.1| SsrA-binding protein [Chlamydia trachomatis G/11074] gi|297139953|gb|ADH96711.1| SsrA-binding protein [Chlamydia trachomatis G/9301] gi|297748205|gb|ADI50751.1| SsrA-binding protein [Chlamydia trachomatis D-EC] gi|297749085|gb|ADI51763.1| SsrA-binding protein [Chlamydia trachomatis D-LC] Length = 151 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K + NRKA ++Y ++ + +AGIVLTGTE+KSLR N+ D+Y T E WL S Sbjct: 2 GVKEIVSNRKAFHHYEVLETLDAGIVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLQSS 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N NH RR RKLLL K EIH+L A + + G+T+VP+ +F+ KG K+ + Sbjct: 62 IALYRFGNINNHEERRKRKLLLHKYEIHKLDARISQKGLTVVPLSFFFS-KGFVKVRIGC 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 +GKK +DKR++ +R+ +R+ ++ Sbjct: 121 CRGKKAHDKRQSIIEREKNRELAAAMKR 148 >gi|295134932|ref|YP_003585608.1| SsrA-binding protein [Zunongwangia profunda SM-A87] gi|294982947|gb|ADF53412.1| SsrA-binding protein [Zunongwangia profunda SM-A87] Length = 153 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 101/147 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + NRKA++ Y + + AGI L GTE+K++R K +I++S+ F++ E+++ N ++ E Sbjct: 7 INIKNRKAKFQYEFLDKYIAGIKLAGTEIKAIRQGKASIAESFCEFQDGELYVINMHVEE 66 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A FNH P+ RKLLL KRE+ +L V+ G+T++P++++ N +GLAKI + LA+G Sbjct: 67 YSHATHFNHNPKSERKLLLQKRELRKLEKEVKNGGLTIIPLRLFINDRGLAKIQITLAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRET K RD R+ RI +E+N Sbjct: 127 KKLYDKRETIKDRDNKRKLDRIKKEYN 153 >gi|152991971|ref|YP_001357692.1| ssrA RNA-binding protein [Sulfurovum sp. NBC37-1] gi|166223468|sp|A6Q776|SSRP_SULNB RecName: Full=SsrA-binding protein gi|151423832|dbj|BAF71335.1| ssrA RNA-binding protein [Sulfurovum sp. NBC37-1] Length = 153 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 98/149 (65%), Gaps = 1/149 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +V+ N+KAR++Y I+ FEAGIVL+G EVK+LR + N+SD++ F E++L N++I Sbjct: 4 NIVAQNKKARHDYEILEKFEAGIVLSGAEVKALRAKRANLSDAFCRFIKGELYLMNAHIA 63 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 AN F R RKLLL K+E+ +LY V +DG+T+VP+ IYFN + AK+ +A+A Sbjct: 64 HLETANKYFTPDTRAPRKLLLHKKELEKLYVKVHKDGLTIVPLMIYFNERNYAKVSIAIA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKR K + DR+ ++ + Sbjct: 124 KGKKLHDKRADMKAKTLDREAKTAMKNRS 152 >gi|327399336|ref|YP_004340205.1| SsrA-binding protein [Hippea maritima DSM 10411] gi|327181965|gb|AEA34146.1| SsrA-binding protein [Hippea maritima DSM 10411] Length = 148 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 95/145 (65%), Gaps = 2/145 (1%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 NRKAR++Y I+ ++EAG+ L G+EVKS+R+ N+ DSYA +N EIW+ N +I Y Sbjct: 4 IVNRKARHDYEILETYEAGLELKGSEVKSIRMGSANLKDSYAEIKNGEIWVNNFHISPYK 63 Query: 75 QAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 A+ NH P R +KLLL K +I RL V+ G+TL+P+K+Y G K++LALA+GK Sbjct: 64 FASAHTNHDPYRKKKLLLHKYQIRRLIGKVKEKGLTLIPLKVYSK-NGKIKMELALAKGK 122 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 K +DKR+ K+RD R+ R L Sbjct: 123 KLFDKRKDIKERDLTREAERELARF 147 >gi|237741621|ref|ZP_04572102.1| SsrA-binding protein [Fusobacterium sp. 4_1_13] gi|229429269|gb|EEO39481.1| SsrA-binding protein [Fusobacterium sp. 4_1_13] Length = 148 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVGIKESFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R + +N Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKSNN 147 >gi|330444457|ref|YP_004377443.1| SsrA-binding protein [Chlamydophila pecorum E58] gi|328807567|gb|AEB41740.1| SsrA-binding protein [Chlamydophila pecorum E58] Length = 150 Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + NRKA +NY ++ + EAGI+LTGTE+KSLR N+ D+Y + E WL N+ I Sbjct: 3 SKDIVSNRKALHNYEVLDTLEAGIILTGTEIKSLRDHGGNLGDAYVSISRGEAWLLNASI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + EI +L + V + G++L+P+ ++F+ +G K+ L Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYEIRKLESRVSQKGISLIPLGMFFS-RGYVKVRLGCC 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR+ R+ +R+ ++ + Sbjct: 122 RGKKAYDKRQALITREKEREIAAAMKRY 149 >gi|313681630|ref|YP_004059368.1| ssra-binding protein [Sulfuricurvum kujiense DSM 16994] gi|313154490|gb|ADR33168.1| SsrA-binding protein [Sulfuricurvum kujiense DSM 16994] Length = 150 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 58/144 (40%), Positives = 93/144 (64%), Gaps = 1/144 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y+I FEAG+VL G+EVKSLR +VN+ D + E ++ +I Sbjct: 5 IATNKKAFFDYYIEEKFEAGLVLKGSEVKSLRAGRVNLKDGFIKIVRGEAFVFGVHIGVL 64 Query: 74 LQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 +RF + R +RKLLL K++I +++ AV ++G TLVP+ IYFN + +AK+ +A+ +G Sbjct: 65 DTTHRFYAHEERGSRKLLLHKKQIDKMFKAVEKEGFTLVPLSIYFNDRNIAKMQVAIVKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK YDKR+ K++ R R L+ Sbjct: 125 KKLYDKRDDLKEKSIKRDIERALK 148 >gi|242310637|ref|ZP_04809792.1| SsrA-binding protein [Helicobacter pullorum MIT 98-5489] gi|239523035|gb|EEQ62901.1| SsrA-binding protein [Helicobacter pullorum MIT 98-5489] Length = 152 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA Y++ I+ +EAGI L G+EVKS+R +VN+ DS+ N E +L ++I Sbjct: 2 KIIATNKKALYDFFILEKYEAGIELVGSEVKSIRAGRVNLKDSFVKIVNGEAFLFQAHIS 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 N + +R RKLLL ++EI +L+ + GM++V +K+YFN + AK+++ALA Sbjct: 62 VLDTTNRYYKPDEKRPRKLLLHRKEIDKLFGKSQVGGMSIVALKLYFNKRNKAKLEIALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRE+ K++ +R+ + L+E Sbjct: 122 KGKNLHDKRESLKEKIQNREIAQTLKEF 149 >gi|86143245|ref|ZP_01061647.1| SsrA-binding protein [Leeuwenhoekiella blandensis MED217] gi|85830150|gb|EAQ48610.1| SsrA-binding protein [Leeuwenhoekiella blandensis MED217] Length = 154 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 64/147 (43%), Positives = 105/147 (71%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N+KAR+ Y ++ + AGI L GTE+KS+R K +I++S+ F+++E+++ N I E Sbjct: 7 INIKNKKARFEYELLDKYTAGIKLAGTEIKSIREGKASIAESFCEFQDNELFVINMTIQE 66 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A FNH P+ +RKLLL++RE+++L+ VR G+T+VP++++ N +GLAK+ +ALA+G Sbjct: 67 YSHATYFNHNPKNSRKLLLNRRELNKLHKEVRNSGLTIVPLRLFINDRGLAKMQIALAKG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE K+RD ++ +I + N Sbjct: 127 KKLYDKREAIKERDSKKRLGQIKKAFN 153 >gi|163755470|ref|ZP_02162589.1| SsrA-binding protein [Kordia algicida OT-1] gi|161324383|gb|EDP95713.1| SsrA-binding protein [Kordia algicida OT-1] Length = 152 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 69/149 (46%), Positives = 101/149 (67%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69 K + N+KAR+ Y I+ + AGIVLTGTE+KS+R+SK +I++S+ F E E+++ N Y Sbjct: 3 KNINIQNKKARFQYEILDKYTAGIVLTGTEIKSIRLSKASIAESFCEFNERGELFVVNMY 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY +NH PR RKLLL+K+E+ L V+ G+T+VP++++ N +GLAK+ +AL Sbjct: 63 IEEYAFGTHYNHKPRSTRKLLLNKKELRSLNKQVKNSGLTIVPLRLFLNDRGLAKLSIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRET K RD R RI + Sbjct: 123 VKGKKIHDKRETIKDRDNKRNLDRIKKSF 151 >gi|973172|gb|AAC44080.1| orf1; hypothetical protein, similar to Escherichia coli SmpB, small major protein B, Swiss-Prot Accession Number P32052, and to Streptococcus faecalis ATPase A, encoded by GenBank Accession Number M90060 [Neisseria meningitidis] Length = 148 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA +++ I EAG+VL G EVK++R + + +SY ++ D +L +I Sbjct: 3 IANNKKAFHDFFIEDRIEAGLVLEGWEVKAIRAALSMLKESYMYWKKDAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + R LL++ EI++L R G T VP+ F+ +G K+++ LA+G Sbjct: 63 PTASTHIKPDAVRRASFLLNQSEINKLNGKTERAGYTTVPLGFAFS-RGKIKMEIGLAKG 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR++ K+ DW R+K R+++ Sbjct: 122 KKQHDKRQSMKEADWKREKQRLIKH 146 >gi|269303212|gb|ACZ33312.1| SsrA-binding protein [Chlamydophila pneumoniae LPCoLN] Length = 165 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I Sbjct: 17 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 76 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + E+ +L + + GMTL+P+ ++ + +G K+ L Sbjct: 77 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMFLS-RGYVKVRLGCC 135 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDK T +R+ +R+ ++ Sbjct: 136 RGKKTYDKHRTIIEREKEREVAAAMKRR 163 >gi|29840208|ref|NP_829314.1| SsrA-binding protein [Chlamydophila caviae GPIC] gi|33301622|sp|Q823G4|SSRP_CHLCV RecName: Full=SsrA-binding protein gi|29834556|gb|AAP05192.1| SsrA-binding protein [Chlamydophila caviae GPIC] Length = 150 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K + NRKA NY ++ + EAG+VLTGTE+KSLR N+ D+Y E WL N+ Sbjct: 2 SSKEIVSNRKALRNYEVLDTLEAGVVLTGTEIKSLRDHGGNLGDAYVAISKGEAWLLNAS 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N +NH RR RKLLL + EI +L V + G+T++P+ ++ + +G KI L Sbjct: 62 IAPYRFGNIYNHEERRKRKLLLHRYEIRKLEGRVAQKGITIIPLGMFLS-RGYVKIRLGC 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR+T R+ R+ ++ + Sbjct: 121 CRGKKAHDKRQTIIAREKQREVESAMKRY 149 >gi|149194859|ref|ZP_01871953.1| SsrA-binding protein [Caminibacter mediatlanticus TB-2] gi|149135018|gb|EDM23500.1| SsrA-binding protein [Caminibacter mediatlanticus TB-2] Length = 151 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 88/148 (59%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+V+ NRKA ++Y I +EAGI L G+EVK+LR + N+ DS+ ++ E W +I Sbjct: 2 KIVATNRKAYHDYDIFDKYEAGIELKGSEVKALRAGRANLKDSFVKIKDGEAWWVQGHIS 61 Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 F H +R RKLLL K EI +L G TLVP KIYFN K AK+++A+A Sbjct: 62 NLDTTYSAFRHDEKRPRKLLLHKSEIAKLAGYTSERGYTLVPTKIYFNNKNKAKLEIAVA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR K+++ ++ ++ + Sbjct: 122 KGRKLHDKRRVMKEKELKKEAAAAMKRY 149 >gi|260435686|ref|ZP_05789656.1| SsrA-binding protein [Synechococcus sp. WH 8109] gi|260413560|gb|EEX06856.1| SsrA-binding protein [Synechococcus sp. WH 8109] Length = 166 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 87/148 (58%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I Sbjct: 20 RMLADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79 Query: 72 EYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + A + FNH P R RKLL + EI++L V + G+TL+P+ I+ K+ + L Sbjct: 80 PHTHAGSYFNHDPLRTRKLLAHRHEINKLRGLVDQKGLTLIPLNIHLKGS-WIKLTIGLG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR EK++ + + + Sbjct: 139 KGRKLHDKRAAEKEKQSKKDVKAAMERY 166 >gi|282889707|ref|ZP_06298246.1| hypothetical protein pah_c004o053 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500281|gb|EFB42561.1| hypothetical protein pah_c004o053 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 152 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 60/144 (41%), Positives = 90/144 (62%), Gaps = 1/144 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + NR+A +NY I+++FE GIVL GTE+KSLR + ++ ++Y ++EIWL I Y Sbjct: 8 LVSNRRATFNYEILQTFETGIVLLGTEIKSLRDNGGSLQEAYVKIFDNEIWLIGCNIAPY 67 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 N NH RR RKLL+ KREI RL A G+TL+P+ + G K+ +A A+GK Sbjct: 68 RYGNVHNHEERRQRKLLMHKREILRLKEATHEKGLTLIPLAFFLK-NGRVKVRIATAKGK 126 Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157 KN DKR++ ++++ R+ R L+ Sbjct: 127 KNVDKRDSIREKEDTRKIQRALKN 150 >gi|27363840|ref|NP_759368.1| SsrA-binding protein [Vibrio vulnificus CMCP6] gi|37679002|ref|NP_933611.1| SsrA-binding protein [Vibrio vulnificus YJ016] gi|320157244|ref|YP_004189623.1| tmRNA-binding protein SmpB [Vibrio vulnificus MO6-24/O] gi|29611854|sp|Q8DF53|SSRP_VIBVU RecName: Full=SsrA-binding protein gi|39932257|sp|Q7MN99|SSRP_VIBVY RecName: Full=SsrA-binding protein gi|27359957|gb|AAO08895.1| SsrA-binding protein [Vibrio vulnificus CMCP6] gi|37197744|dbj|BAC93582.1| small protein B [Vibrio vulnificus YJ016] gi|319932556|gb|ADV87420.1| tmRNA-binding protein SmpB [Vibrio vulnificus MO6-24/O] Length = 161 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 1 MSLK-SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K S+ ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY Sbjct: 1 MAKKNSKPKAGSNTIALNKKARHEYFIEDEIEAGMELQGWEVKALRQGKANISESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +++ I Q + P R RKLL+S+RE+ L + R+GMTL + +Y+ Sbjct: 61 DGEAFVSGMTITPLNQASTHVVANPTRVRKLLMSRRELDNLLGRINREGMTLAALSLYW- 119 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 A+ KI + +A+GKK +DKR+ K RDW RQK R+++ Sbjct: 120 ARSWVKIKIGVAKGKKLHDKRDDIKDRDWQRQKARVMK 157 >gi|163783612|ref|ZP_02178601.1| SsrA-binding protein [Hydrogenivirga sp. 128-5-R1-1] gi|159881105|gb|EDP74620.1| SsrA-binding protein [Hydrogenivirga sp. 128-5-R1-1] Length = 158 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 92/157 (58%), Gaps = 5/157 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFE 59 M+ + P ++DNR+AR Y I+ +EAG+VL G EVKSLR V+ DS+ + Sbjct: 1 MAKANNKVIP---IADNREARAKYEILEKYEAGLVLEGPEVKSLRNKGNVSFKDSFVRID 57 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 + E WL N YI Y A P R RKLLL KREI +L + G T++P+++Y+ Sbjct: 58 DGEAWLYNLYIAPYRFATIKPPDPLRKRKLLLHKREIMKLMGKSQEKGYTIIPLRLYWK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 G K+++ALA+GKK +D+R+ K+R R+ R + Sbjct: 117 NGKVKVEIALARGKKLHDRRQELKERAMKRELEREFK 153 >gi|237740437|ref|ZP_04570918.1| SsrA-binding protein [Fusobacterium sp. 2_1_31] gi|294782478|ref|ZP_06747804.1| SsrA-binding protein [Fusobacterium sp. 1_1_41FAA] gi|229422454|gb|EEO37501.1| SsrA-binding protein [Fusobacterium sp. 2_1_31] gi|294481119|gb|EFG28894.1| SsrA-binding protein [Fusobacterium sp. 1_1_41FAA] Length = 148 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG K+ +A+A+G Sbjct: 62 WEYGSIYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKVQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R ++ +N Sbjct: 121 KKTYDKRESIAKKDQERNLKRDIKINN 147 >gi|259501076|ref|ZP_05743978.1| SsrA-binding protein [Lactobacillus iners DSM 13335] gi|302190475|ref|ZP_07266729.1| SsrA-binding protein [Lactobacillus iners AB-1] gi|309803838|ref|ZP_07697923.1| SsrA-binding protein [Lactobacillus iners LactinV 11V1-d] gi|309808863|ref|ZP_07702744.1| SsrA-binding protein [Lactobacillus iners LactinV 01V1-a] gi|309809360|ref|ZP_07703222.1| SsrA-binding protein [Lactobacillus iners SPIN 2503V10-D] gi|312870808|ref|ZP_07730914.1| SsrA-binding protein [Lactobacillus iners LEAF 3008A-a] gi|312873161|ref|ZP_07733220.1| SsrA-binding protein [Lactobacillus iners LEAF 2062A-h1] gi|312874379|ref|ZP_07734410.1| SsrA-binding protein [Lactobacillus iners LEAF 2052A-d] gi|312875086|ref|ZP_07735103.1| SsrA-binding protein [Lactobacillus iners LEAF 2053A-b] gi|315653864|ref|ZP_07906780.1| SsrA-binding protein [Lactobacillus iners ATCC 55195] gi|325911451|ref|ZP_08173863.1| SsrA-binding protein [Lactobacillus iners UPII 143-D] gi|325913343|ref|ZP_08175711.1| SsrA-binding protein [Lactobacillus iners UPII 60-B] gi|329920441|ref|ZP_08277173.1| SsrA-binding protein [Lactobacillus iners SPIN 1401G] gi|259167770|gb|EEW52265.1| SsrA-binding protein [Lactobacillus iners DSM 13335] gi|308164072|gb|EFO66334.1| SsrA-binding protein [Lactobacillus iners LactinV 11V1-d] gi|308167861|gb|EFO69998.1| SsrA-binding protein [Lactobacillus iners LactinV 01V1-a] gi|308170271|gb|EFO72302.1| SsrA-binding protein [Lactobacillus iners SPIN 2503V10-D] gi|311089376|gb|EFQ47803.1| SsrA-binding protein [Lactobacillus iners LEAF 2053A-b] gi|311090145|gb|EFQ48558.1| SsrA-binding protein [Lactobacillus iners LEAF 2052A-d] gi|311091394|gb|EFQ49779.1| SsrA-binding protein [Lactobacillus iners LEAF 2062A-h1] gi|311093684|gb|EFQ52022.1| SsrA-binding protein [Lactobacillus iners LEAF 3008A-a] gi|315488560|gb|EFU78206.1| SsrA-binding protein [Lactobacillus iners ATCC 55195] gi|325476801|gb|EGC79955.1| SsrA-binding protein [Lactobacillus iners UPII 143-D] gi|325477446|gb|EGC80590.1| SsrA-binding protein [Lactobacillus iners UPII 60-B] gi|328936117|gb|EGG32570.1| SsrA-binding protein [Lactobacillus iners SPIN 1401G] Length = 152 Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats. Identities = 67/156 (42%), Positives = 97/156 (62%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + N ++ N+KA Y+Y I +FEAGI LTGTE+KS+R ++N+ D Y Sbjct: 1 MKKKENDA---LATNKKASYDYFIKETFEAGIALTGTEIKSVRARRINLKDGYVQTYRGS 57 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +L N +I EY Q N +NH P R+R+LLL K+EI+ L + GMT++P+K+Y G Sbjct: 58 AFLENVHISEYKQGNIYNHDPLRSRRLLLHKKEINHLQIIQAQQGMTIIPLKVYLK-HGY 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + + QGKK YDKRET K+RD DR+ + Sbjct: 117 AKVLIGVGQGKKQYDKRETIKRRDQDRELKSKYKIR 152 >gi|33862428|ref|NP_893988.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9313] gi|39932300|sp|Q7V911|SSRP_PROMM RecName: Full=SsrA-binding protein gi|33640541|emb|CAE20330.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9313] Length = 165 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 2/144 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + E+ L N +I + Sbjct: 23 DNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPHSH 82 Query: 76 A-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 A + FNH P R RKLL +REI +L + R G+TL+P+ ++ K+ + L +G+K Sbjct: 83 AGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGS-WIKLTIGLGKGRK 141 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR+ EK++ DR+ L + Sbjct: 142 LHDKRQDEKRKQADREVKSALARY 165 >gi|15618257|ref|NP_224542.1| SsrA-binding protein [Chlamydophila pneumoniae CWL029] gi|15835872|ref|NP_300396.1| SsrA-binding protein [Chlamydophila pneumoniae J138] gi|6685962|sp|Q9Z8K1|SSRP_CHLPN RecName: Full=SsrA-binding protein gi|4376616|gb|AAD18486.1| Small Protein B [Chlamydophila pneumoniae CWL029] gi|8978711|dbj|BAA98547.1| small protein B [Chlamydophila pneumoniae J138] Length = 151 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 89/148 (60%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K + NRKA NY ++ + EAGIVLTGTE+KSLR N+ D+Y E WL N+ I Sbjct: 3 QKEIVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y N +NH RR RKLLL + E+ +L + + GMTL+P+ ++ + +G K+ L Sbjct: 63 APYRFGNIYNHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMFLS-RGYVKVRLGCC 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR T +R+ +R+ ++ Sbjct: 122 RGKKAYDKRRTIIEREKEREVAAAMKRR 149 >gi|118474780|ref|YP_891887.1| SsrA-binding protein [Campylobacter fetus subsp. fetus 82-40] gi|187611474|sp|A0RNV4|SSRP_CAMFF RecName: Full=SsrA-binding protein gi|118414006|gb|ABK82426.1| SsrA-binding protein [Campylobacter fetus subsp. fetus 82-40] Length = 151 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K ++ N+KA ++Y I+ +FEAGI L G+EVK+LR + N+ DS+ E++L N++I Sbjct: 2 SKDLARNKKAFHDYAILETFEAGIALKGSEVKALRAGRANLKDSFVRIIRGELFLLNAHI 61 Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 N F R RKLL+ +R+I +L+ V DG+T+V + +Y N+K + K ++AL Sbjct: 62 SYLDTTNSYFRPDERAPRKLLMHRRQIDKLFGKVSTDGLTMVALSLYLNSKNIVKANIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GK +DKRE K+++ + + L+++ Sbjct: 122 AKGKNLHDKREALKQKEANIEARSALKKY 150 >gi|78211669|ref|YP_380448.1| SsrA-binding protein [Synechococcus sp. CC9605] gi|123578998|sp|Q3AND9|SSRP_SYNSC RecName: Full=SsrA-binding protein gi|78196128|gb|ABB33893.1| SsrA-binding protein [Synechococcus sp. CC9605] Length = 166 Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I Sbjct: 20 RMLADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79 Query: 72 EYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + A N FNH P R RKLL +REI + V + G+TL+P+ + K+ + L Sbjct: 80 PHTHAGNYFNHDPLRTRKLLAHRREIDKFRGLVDQKGLTLIPLSLQLKGS-WIKLTIGLG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR EK++ + + + Sbjct: 139 KGRKLHDKRAAEKEKQSKKDVKAAMERY 166 >gi|260494524|ref|ZP_05814654.1| SsrA-binding protein [Fusobacterium sp. 3_1_33] gi|260197686|gb|EEW95203.1| SsrA-binding protein [Fusobacterium sp. 3_1_33] Length = 148 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAEKVSIKESFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G Sbjct: 62 WDFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK YDKRE+ K+D +R R + +N Sbjct: 121 KKTYDKRESIAKKDQERNLKREFKNNN 147 >gi|237751952|ref|ZP_04582432.1| SsrA-binding protein [Helicobacter winghamensis ATCC BAA-430] gi|229376519|gb|EEO26610.1| SsrA-binding protein [Helicobacter winghamensis ATCC BAA-430] Length = 153 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 97/147 (65%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA +++ I+ FEAGI L G+EVK++R KVN+ DS+ N E +L ++I Sbjct: 2 KIIATNKKATFDFFILDKFEAGIALQGSEVKAIRAGKVNLKDSFVKIVNGEAFLFQAHIA 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 N + +R RKLLL K+EI +L+ + GM++V +K+YFNA+ AK+++ALA Sbjct: 62 TLATTNLHYKPDEKRPRKLLLHKKEIDKLFGKSQVAGMSIVALKLYFNARNKAKLEIALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157 +GK +DKRE+ K++ R+ + L+E Sbjct: 122 KGKNLHDKRESLKEKIQKREIAQSLKE 148 >gi|312143214|ref|YP_003994660.1| SsrA-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311903865|gb|ADQ14306.1| SsrA-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 97/158 (61%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + ++V+ N+KA+++++I +EAGI L GTE+KS+R +VN+ DS+A E Sbjct: 1 MAKK---DEDIEIVARNKKAKHDFYIEEVYEAGIKLQGTEIKSIRNHRVNLKDSFALVEG 57 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N +I Y + NRFNH P R RKLLL K +I +L + G TLVP+ IY K Sbjct: 58 GEVYLHNMHISPYKEGNRFNHEPERKRKLLLHKSQIRKLIGYTTQKGYTLVPLTIYLR-K 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K++LA+A+GK+ +DKR K R+ + Sbjct: 117 NLCKVELAVAKGKQKHDKRRDIAKETAKREMEKAFNRR 154 >gi|218962043|ref|YP_001741818.1| SsrA-binding protein [Candidatus Cloacamonas acidaminovorans] gi|167730700|emb|CAO81612.1| SsrA-binding protein [Candidatus Cloacamonas acidaminovorans] Length = 142 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 70/138 (50%), Positives = 93/138 (67%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 NR+A ++Y I+++ EAGI L GTE+KS+R KVN DSYA E+ E WL N +I + Sbjct: 4 IKNRRAEHDYFIIQTLEAGIALKGTEIKSIRAGKVNFKDSYAKIEDGECWLHNLHISPWE 63 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 +A FNH R RKLLL K EI RL V GMTL+P++++ N +GL KI LALA+GKK Sbjct: 64 KAAYFNHEAERKRKLLLHKHEIRRLKTKVEEQGMTLIPLELFINDEGLCKITLALAKGKK 123 Query: 135 NYDKRETEKKRDWDRQKH 152 YDKRE +K+D +R + Sbjct: 124 AYDKREVMRKKDLERDQE 141 >gi|257460423|ref|ZP_05625524.1| SsrA-binding protein [Campylobacter gracilis RM3268] gi|257441754|gb|EEV16896.1| SsrA-binding protein [Campylobacter gracilis RM3268] Length = 154 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 57/149 (38%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K +S NRKA +++ I+ SFEAGIVL G+EVK+LR + N+ DS+ E++L N++I Sbjct: 2 KELSKNRKAFHDFTILESFEAGIVLKGSEVKALRAGRGNLKDSFCRVIRGELFLLNAHIS 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 N F RKLL+ +++I +L AV ++G+T+V + +Y N K K +ALA Sbjct: 62 YLESTNAHFRPDEGAARKLLMHRKQIDKLLGAVSKEGLTIVVLSLYLNDKNRVKARIALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GK +DKRE+ K+++ DR+ ++ ++ Sbjct: 122 KGKNLHDKRESLKRKEADREAQSAMKRYD 150 >gi|94969023|ref|YP_591071.1| SsrA-binding protein [Candidatus Koribacter versatilis Ellin345] gi|187611491|sp|Q1IQ53|SSRP_ACIBL RecName: Full=SsrA-binding protein gi|94551073|gb|ABF40997.1| SsrA-binding protein [Candidatus Koribacter versatilis Ellin345] Length = 175 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 101/158 (63%), Gaps = 4/158 (2%) Query: 3 LKSRGNP---PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 ++ +P ++ S NR A +NY ++ +EAG+ L GTEVKS+R + N+ D+Y + Sbjct: 15 KNAKRDPVASGERDASVNRAASHNYFLLDKYEAGVALRGTEVKSIRDGRANLKDAYGLVK 74 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E+WL N++I Y A+ NH P R RKLL+ KREI +L AA ++ G TL+P ++YF Sbjct: 75 ENELWLINAHIGPYDAASYNNHAPLRTRKLLVKKREILKLLAASQQKGHTLIPTRMYFK- 133 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K++LA+A+GK+ +DKRET++++ DR + Sbjct: 134 NGRVKVELAVAKGKQLWDKRETDRRKTADRDAREAIAR 171 >gi|162450572|ref|YP_001612939.1| SmpB-like protein [Sorangium cellulosum 'So ce 56'] gi|187629773|sp|A9G109|SSRP_SORC5 RecName: Full=SsrA-binding protein gi|161161154|emb|CAN92459.1| SmpB-like protein [Sorangium cellulosum 'So ce 56'] Length = 162 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 64/149 (42%), Positives = 99/149 (66%), Gaps = 2/149 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 K + P + +++ N++A +NY + FEAGIVL G+EVK LR K +++DS+ T E+ Sbjct: 3 KEKARPGETLIARNKRAGFNYDLGDRFEAGIVLKGSEVKMLRAGKADLTDSFCTVLRGEV 62 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 +L I A F H P+ RKLLL +REI R+ ++ R+GMT V ++YF + GLA Sbjct: 63 FLHGVSIAAMASAA-FGHVPKGARKLLLHRREIERIDLSIAREGMTAVATRLYFKS-GLA 120 Query: 124 KIDLALAQGKKNYDKRETEKKRDWDRQKH 152 K+++ALA+GKK++DKRET K++D +R+ Sbjct: 121 KVEIALARGKKSHDKRETIKEQDAEREMR 149 >gi|299138918|ref|ZP_07032095.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX8] gi|298599072|gb|EFI55233.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX8] Length = 179 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 93/148 (62%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 ++ + NR A +NY + EAG+ L GTEVKS+R K N+ D+Y ++ E +L N++ Sbjct: 29 GQRDAAFNRSASFNYFLSDRVEAGVALRGTEVKSIREGKANLKDAYGLLKDGECFLLNAH 88 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I + N NH R RKLLL KREI +L AA ++ G TL+P+K+YF G K +LAL Sbjct: 89 IGPFSHGNNMNHESLRTRKLLLHKREIEKLEAATKQKGYTLIPVKLYFK-NGRVKCELAL 147 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GK+++DKR TE+ R+ D++ + Sbjct: 148 AKGKQDWDKRATERAREGDKEAKAAIAR 175 >gi|160901850|ref|YP_001567431.1| SsrA-binding protein [Petrotoga mobilis SJ95] gi|187629767|sp|A9BF44|SSRP_PETMO RecName: Full=SsrA-binding protein gi|160359494|gb|ABX31108.1| SsrA-binding protein [Petrotoga mobilis SJ95] Length = 150 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 100/147 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA ++Y I+ +FEAGI L GTEVKS + K+N DS+ E E+ L N +I Sbjct: 3 TLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHISP 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A+ FNH P R RKLLL K+EI RL + V+++G+T++P++IY N KGL K+ +ALA+G Sbjct: 63 YSGASIFNHDPERPRKLLLHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALAKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K YDKRE +++++R+ + + N Sbjct: 123 LKKYDKREKIAEKEYERRIRKQQKYEN 149 >gi|320539194|ref|ZP_08038865.1| trans-translation protein [Serratia symbiotica str. Tucson] gi|320030832|gb|EFW12840.1| trans-translation protein [Serratia symbiotica str. Tucson] Length = 160 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 2/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K P ++ N++A + Y I EAG+ L G EVKSLR K N+ DSY TF + Sbjct: 1 MIKKKAHKPGSATIAQNKRACFEYFIEEEIEAGLSLQGWEVKSLRAGKANLCDSYVTFRD 60 Query: 61 DEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + + ++ P R RKLLL+KRE+ L V R+G T+V + +Y+ Sbjct: 61 GEAYLFGATLTPLSVASSHVVCDPIRTRKLLLNKRELDSLIGRVNREGYTVVALSMYWK- 119 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ + +A+GKK +DKR+ K R+W + K RI++ N Sbjct: 120 NAWCKVKIGIAKGKKEHDKRDDIKDREWQKAKARIMKHAN 159 >gi|124004412|ref|ZP_01689257.1| SsrA-binding protein [Microscilla marina ATCC 23134] gi|123989984|gb|EAY29498.1| SsrA-binding protein [Microscilla marina ATCC 23134] Length = 155 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 61/143 (42%), Positives = 98/143 (68%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K V NRKA ++Y + + AG+VLTGTE+KS+R S+V + D++ F+++E+WL + Sbjct: 11 SKNVHIKNRKASFDYQFLDKYIAGVVLTGTEIKSIRQSQVVLGDAFCFFKDEELWLKQMH 70 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y +NH P R RKLLL+K+E+ ++ + G+++VP +++ N +GLAKI++A+ Sbjct: 71 IAPYENGTHYNHEPTRERKLLLNKKELKKISKKLAEKGLSVVPTRLFINDRGLAKIEVAV 130 Query: 130 AQGKKNYDKRETEKKRDWDRQKH 152 A+GKK YDKRE+ K+RD R+ Sbjct: 131 ARGKKLYDKRESMKERDSKRELK 153 >gi|256422673|ref|YP_003123326.1| SsrA-binding protein [Chitinophaga pinensis DSM 2588] gi|256037581|gb|ACU61125.1| SsrA-binding protein [Chitinophaga pinensis DSM 2588] Length = 145 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 59/141 (41%), Positives = 94/141 (66%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 NR A + Y I + AG+VLTGTE+KS+R S+V+ +DS+ F E+++ + +I EY Sbjct: 5 KNRSAYFEYAIEDKYIAGMVLTGTEIKSIRGSRVSFNDSFCYFSKGELFVKSLHISEYTH 64 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 NH P R RKLLL+KRE+ +L ++ G +++P++I+ K LAKI++ L +GKK Sbjct: 65 GTYSNHDPLRERKLLLTKRELRKLENKIKERGYSIIPLRIFITDKSLAKIEIGLGKGKKL 124 Query: 136 YDKRETEKKRDWDRQKHRILR 156 +DKR++ K+R+ DR+ R L+ Sbjct: 125 HDKRDSIKQRETDREIRRFLK 145 >gi|146329096|ref|YP_001209881.1| SsrA-binding protein [Dichelobacter nodosus VCS1703A] gi|166223215|sp|A5EXZ5|SSRP_DICNV RecName: Full=SsrA-binding protein gi|146232566|gb|ABQ13544.1| SsrA-binding protein [Dichelobacter nodosus VCS1703A] Length = 159 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 56/159 (35%), Positives = 94/159 (59%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K N + N+K ++Y + FEAGI L G EVK++R ++ I +SY ++ Sbjct: 1 MSKK---NTADNHIVTNKKVFHDYFLEEHFEAGIALEGWEVKAVRAGRIQIKESYILVKD 57 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +++L + I ++ +R RKLLL + +I +L A RDG TL+P+ +Y+ Sbjct: 58 QQVYLFGALIHPLASASSHIFPEAQRTRKLLLHRYQIAKLIGASERDGYTLMPVSLYWK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+D+A+A+GKK +DKR+ +K +DW + + RI++ H Sbjct: 117 NGFVKVDVAIAKGKKEFDKRQVKKDQDWKKTQSRIMKAH 155 >gi|88802973|ref|ZP_01118500.1| SsrA-binding protein [Polaribacter irgensii 23-P] gi|88781831|gb|EAR13009.1| SsrA-binding protein [Polaribacter irgensii 23-P] Length = 152 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 100/149 (67%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69 K + N+KAR+ + I+ F AGI LTGTE+KS+R+S+ I++S+ F E E+++ N Y Sbjct: 4 KNINIQNKKARFEFEILDKFVAGIQLTGTEIKSIRLSQARITESFCEFNEGGELFIVNMY 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY+ ++FNH P+ R+LLL+KRE+ L V G T+VP+K++ N +G AK+++AL Sbjct: 64 IQEYMFGHQFNHKPKSERRLLLNKRELRSLKRDVEAKGNTIVPLKLFINDRGFAKLEIAL 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GK+ +DKRE K RD R RI + Sbjct: 124 AKGKQTHDKREVMKDRDNKRDLARIKKNF 152 >gi|52081941|ref|YP_080732.1| SsrA-binding protein [Bacillus licheniformis ATCC 14580] gi|52787325|ref|YP_093154.1| SsrA-binding protein [Bacillus licheniformis ATCC 14580] gi|319647803|ref|ZP_08002021.1| SsrA-binding protein [Bacillus sp. BT1B_CT2] gi|67461368|sp|Q65EQ3|SSRP_BACLD RecName: Full=SsrA-binding protein gi|52005152|gb|AAU25094.1| tmRNA-binding protein [Bacillus licheniformis ATCC 14580] gi|52349827|gb|AAU42461.1| SmpB [Bacillus licheniformis ATCC 14580] gi|317390144|gb|EFV70953.1| SsrA-binding protein [Bacillus sp. BT1B_CT2] Length = 157 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVVS N+KA ++Y I ++E GIVL GTE+KS+R +VN+ D++A E E++L N +I Sbjct: 7 KVVSQNKKANHDYFIEETYETGIVLQGTEIKSIRAGRVNLKDAFAKIERGEVFLHNMHIS 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q NR+NH P R RKLL+ +++I++L + G +LVP+KIY G AK+ L L + Sbjct: 67 PYEQGNRYNHDPLRTRKLLMHRKQINKLIGLTKEQGYSLVPLKIYLK-NGFAKVLLGLGK 125 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKRE K++D R+ R R+ Sbjct: 126 GKKKFDKREDLKRKDAKREIERAFRDR 152 >gi|261886352|ref|ZP_06010391.1| SsrA-binding protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 151 Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K ++ N+KA ++Y I+ +FEAGI L G+EVK+LR + N+ DS+ E++L N++I Sbjct: 2 SKDLARNKKAFHDYAILETFEAGIALKGSEVKALRAGRANLKDSFVRIIRGELFLLNAHI 61 Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 N F R RKLL+ +R+I +L+ V DG+T+V + +Y ++K + K ++AL Sbjct: 62 SYLDTTNSYFRPDERAPRKLLMHRRQIDKLFGKVSPDGLTMVALSLYLSSKNIVKANIAL 121 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GK +DKRE ++++ + + L+++ Sbjct: 122 AKGKNLHDKREALQQKEANIEARSALKKY 150 >gi|110638354|ref|YP_678563.1| SsrA-binding protein [Cytophaga hutchinsonii ATCC 33406] gi|123058754|sp|Q11TP3|SSRP_CYTH3 RecName: Full=SsrA-binding protein gi|110281035|gb|ABG59221.1| SsrA-binding protein [Cytophaga hutchinsonii ATCC 33406] Length = 153 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 100/144 (69%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K V N+KA + Y + +EAGIVL GTE+K++R+SK +IS++Y F+N+E+W+ N I Sbjct: 8 KNVNIKNKKASFEYEFLEKYEAGIVLKGTEIKAIRMSKASISEAYCLFDNEELWIKNMNI 67 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Y + + +NH P RKLLL K E+ +L+ + G+T++ ++++ N +G AKI++ALA Sbjct: 68 SSYDKGSFYNHDPLSARKLLLRKAELKKLFMHSKEKGLTIIALRLFTNERGYAKIEIALA 127 Query: 131 QGKKNYDKRETEKKRDWDRQKHRI 154 +GKK YDKRE+ K +D +R+ RI Sbjct: 128 KGKKLYDKRESIKSKDNEREMQRI 151 >gi|313680026|ref|YP_004057765.1| ssra-binding protein [Oceanithermus profundus DSM 14977] gi|313152741|gb|ADR36592.1| SsrA-binding protein [Oceanithermus profundus DSM 14977] Length = 142 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 68/138 (49%), Positives = 102/138 (73%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 +NRKAR++Y I+ ++EAGI L GTEVKS+R KV+ + ++A F+N E+WL + YI Y + Sbjct: 3 ENRKARHDYEILETYEAGIALKGTEVKSVRAGKVDFTGAFARFDNGELWLEDLYIAPYEK 62 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + NH PRR RKLLL + E+++L V + G+TLVP+KIYFN +G AK+ LALA+GK++ Sbjct: 63 GSYSNHEPRRRRKLLLHRHELNKLRGRVEQKGLTLVPLKIYFNERGYAKVLLALARGKRD 122 Query: 136 YDKRETEKKRDWDRQKHR 153 Y K++ +KKR +R+ + Sbjct: 123 YQKKQDDKKRAVERELEK 140 >gi|297621407|ref|YP_003709544.1| SsrA-binding protein [Waddlia chondrophila WSU 86-1044] gi|297376708|gb|ADI38538.1| SsrA-binding protein [Waddlia chondrophila WSU 86-1044] Length = 160 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 59/156 (37%), Positives = 96/156 (61%), Gaps = 3/156 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 ++ + + + + NRKAR++Y I+ ++EAGI LTGTEVKSLR + ++ ++Y + Sbjct: 4 AMGKKSSSSE--LVSNRKARHSYEILDTYEAGIALTGTEVKSLRDNGGSLQEAYIRVKGG 61 Query: 62 EIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 E+WL +I + N NH R RKLL+ K+EI RL AA + G+T+VP+ +Y G Sbjct: 62 ELWLLKCHIAPWKYGNIHNHEETRERKLLMHKKEIQRLKAATQEKGLTIVPLALYLK-NG 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ LA A+GK DKR++ K++D R+ + ++ Sbjct: 121 KIKVSLAAAKGKTGLDKRKSLKEKDEKRRMQQAMKR 156 >gi|212551007|ref|YP_002309324.1| SsrA-binding protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549245|dbj|BAG83913.1| SsrA-binding protein [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 153 Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 98/148 (66%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K +V N+KA +NY + +F AGI+LTGTE+KS+R+ K ++ DSY + +W+ N Y Sbjct: 4 SKNIVIKNKKASFNYEFIETFIAGIILTGTEIKSIRLGKASLVDSYCLIIKNALWIRNMY 63 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY NH R++RKLLL + E+ R+ ++ G T++P K++ N KGLAK+ + + Sbjct: 64 IAEYFYGTYNNHEMRKDRKLLLIRGELKRIEQFTKKTGFTIIPTKLFINEKGLAKLCITI 123 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GKK YDKR++ ++RD R ++L++ Sbjct: 124 ARGKKIYDKRQSLRERDDKRSMDKVLKK 151 >gi|332091935|gb|EGI97013.1| ssrA-binding protein [Shigella boydii 3594-74] Length = 154 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 75/135 (55%), Gaps = 2/135 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NISDSY + Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E +L + I + + P R RKLLL++RE+ LY V R+G T+V + +Y+ Sbjct: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 Query: 120 KGLAKIDLALAQGKK 134 K+ + +A+GK Sbjct: 120 NAWCKVKIGVAKGKN 134 >gi|325971239|ref|YP_004247430.1| SsrA-binding protein [Spirochaeta sp. Buddy] gi|324026477|gb|ADY13236.1| SsrA-binding protein [Spirochaeta sp. Buddy] Length = 156 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 83/153 (54%), Gaps = 1/153 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + K + N+KA +NY ++ E GI L GTEVKSLR K + +DSY T + + Sbjct: 2 KQDKNVFKPLQKNKKAYFNYEVIEDLECGIALVGTEVKSLREGKFSFADSYVTVTDRTLT 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L I Y N NH P RNR+LL K EI RL V G TLVP IY L K Sbjct: 62 LVGLTIQPYTHGNIHNHDPNRNRRLLAHKSEIKRLKRRVIEKGFTLVPTSIYLRGN-LVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + ++L +GK+ +DKR K+RD +R R +++ Sbjct: 121 VQVSLCRGKQLHDKRAATKERDMNRDMRREVKQ 153 >gi|318042850|ref|ZP_07974806.1| SsrA-binding protein [Synechococcus sp. CB0101] Length = 165 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 89/158 (56%), Gaps = 2/158 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 S K+ + K+++DNR AR+ Y I+ + E G+ L GTEVKS+R +VN+ D + N Sbjct: 9 SAKALRDAANKLLADNRFARHQYEILETLECGVELLGTEVKSIRAGQVNLRDGFCLIRNG 68 Query: 62 EIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 ++ L N +I + A FNH P R R LL +REI +L A+ + G+TL+P+ ++ Sbjct: 69 QLQLHNVHISPHSHAGAYFNHDPLRVRPLLAHRREIDKLRVALDQKGLTLIPLNLHLKGS 128 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K + L +G+K +DKR+ E+++ + + Sbjct: 129 -WIKATIGLGKGRKLHDKRQEERRKQDIKDAKAAIARF 165 >gi|225850159|ref|YP_002730393.1| SsrA-binding protein [Persephonella marina EX-H1] gi|254778374|sp|C0QUM8|SSRP_PERMH RecName: Full=SsrA-binding protein gi|225645872|gb|ACO04058.1| SsrA-binding protein [Persephonella marina EX-H1] Length = 152 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 KVV+ N+ A +NY+I+ ++EAGIVL G+EVKS+R VN+ DS+ +N E ++ N Y Sbjct: 2 GIKVVATNKVAYHNYNIIETYEAGIVLKGSEVKSIREGSVNLRDSFVRIDNGEAFIYNMY 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y A++ H P R RKLLL KREI +L V+ G+T++P K+Y G KI++AL Sbjct: 62 IAPYKPASKLQHDPYRKRKLLLHKREILKLMGKVQEKGLTIIPTKVYLK-NGKVKIEIAL 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILR 156 A+GK Y+KRE K+RD R+ + + Sbjct: 121 AKGKAKYEKREAIKERDMKRELSKKYK 147 >gi|322435310|ref|YP_004217522.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX9] gi|321163037|gb|ADW68742.1| SsrA-binding protein [Acidobacterium sp. MP5ACTX9] Length = 179 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 64/148 (43%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K+ S NR A +NY + +EAG+ L GTEVKS+R K N+ D+Y ++ E +L N++ Sbjct: 29 GKRDASFNRSASFNYFLTDKYEAGVALRGTEVKSIREGKANLKDAYGLLKDGECFLLNAH 88 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I + N NH R RKLLL K EI +L AA R+ G TL+P+++YF G K +LAL Sbjct: 89 IGPFSHGNAMNHEALRTRKLLLHKLEIRKLEAATRQKGFTLIPVRLYFR-HGRVKCELAL 147 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+GK+ +DKR TE+KR+ D + + Sbjct: 148 AKGKQEWDKRATERKREADSEAKSAIAR 175 >gi|148241222|ref|YP_001226379.1| SsrA-binding protein [Synechococcus sp. RCC307] gi|166223469|sp|A5GQ67|SSRP_SYNR3 RecName: Full=SsrA-binding protein gi|147849532|emb|CAK27026.1| SsrA-binding protein [Synechococcus sp. RCC307] Length = 166 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 +K+++DNR+AR+ Y I+ + E GI L GTEVK++R K N+ D + ++ L N +I Sbjct: 19 QKLLADNRQARHQYEILDTLETGIELLGTEVKAIRAGKANLRDGFCLIRQGQLQLHNVHI 78 Query: 71 PEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + QA+ FNH P R R+LL +REI +L + G+TL+P+ I+ K+ + L Sbjct: 79 AGHEQASRYFNHEPLRVRRLLAHRREIDKLRGQLDTKGLTLIPLNIHLKGS-WIKLTIGL 137 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 +G+K +DKR+ E+++ + L+ Sbjct: 138 GKGRKLHDKRQEERRKQDQKDLRSALKR 165 >gi|124021905|ref|YP_001016212.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9303] gi|187629770|sp|A2C637|SSRP_PROM3 RecName: Full=SsrA-binding protein gi|123962191|gb|ABM76947.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9303] Length = 165 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 84/144 (58%), Gaps = 2/144 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + E+ L N +I + Sbjct: 23 DNRLARHQYEILDTLETGIELVGTEVKSIRAGQANLRDGFCLIRKGELQLHNVHISPHSH 82 Query: 76 A-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 A + FNH P R RKLL +REI +L + R G+TL+P+ ++ K+ + L +G+K Sbjct: 83 AGSYFNHDPLRTRKLLAHRREIDKLRGQLDRKGLTLIPLNLHLKGS-WIKLTIGLGKGRK 141 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR+ EK++ DR+ L + Sbjct: 142 LHDKRQEEKRKQADREVKSALARY 165 >gi|116620186|ref|YP_822342.1| SsrA-binding protein [Candidatus Solibacter usitatus Ellin6076] gi|122255465|sp|Q02A69|SSRP_SOLUE RecName: Full=SsrA-binding protein gi|116223348|gb|ABJ82057.1| SsrA-binding protein [Candidatus Solibacter usitatus Ellin6076] Length = 156 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 68/156 (43%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + K++SDNR+A +NY + FE G+VLTGTEVK+ + +K+ + D+YA+ DE Sbjct: 1 MADKKDFAFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 WL N++I +Y NR NH P RNRKLLL +REI +L R G+ L+P KIY G Sbjct: 61 AWLLNAHISQYSHGNRENHLPVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMK-NGK 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K ++A+A+GKK YDKR +K R D + +R Sbjct: 120 IKCEIAVAKGKKLYDKRAADKARTADDEARAEMRRR 155 >gi|88658487|ref|YP_506963.1| SsrA-binding protein [Ehrlichia chaffeensis str. Arkansas] gi|123493900|sp|Q2GHX0|SSRP_EHRCR RecName: Full=SsrA-binding protein gi|88599944|gb|ABD45413.1| SsrA-binding protein [Ehrlichia chaffeensis str. Arkansas] Length = 149 Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats. Identities = 78/147 (53%), Positives = 110/147 (74%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 +V +NRK R+NY I++ F+AGIVL G+EVKSLR KV+I+++Y T N E+WL N +I E Sbjct: 3 IVVENRKVRFNYFIIQEFDAGIVLIGSEVKSLRQRKVSIAEAYVTERNMELWLCNLHISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y QA+ NH P R RKLLL K++I+++ ++ DG T+VP+ +YFN KG+AK+ + + +G Sbjct: 63 YNQASTRNHNPTRPRKLLLRKKQIYKISGNIKNDGFTVVPLCLYFNDKGIAKVKVVIVKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK +DKRET K RDW+R+K RILR N Sbjct: 123 KKLHDKRETIKTRDWNREKSRILRGGN 149 >gi|296271997|ref|YP_003654628.1| SsrA-binding protein [Arcobacter nitrofigilis DSM 7299] gi|296096172|gb|ADG92122.1| SsrA-binding protein [Arcobacter nitrofigilis DSM 7299] Length = 156 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 62/158 (39%), Positives = 98/158 (62%), Gaps = 4/158 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + N+KA ++Y I+ SFEAGI L G+EVKS+R +VN+ DSY Sbjct: 1 MAKKEK---NINLTFKNKKAYHDYFILESFEAGIELLGSEVKSIREGRVNLKDSYIRIIK 57 Query: 61 DEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +E+++ N +I + + R RKLLL +++I +L+ V +DG+T+VP+K+YFNA Sbjct: 58 NEVFVLNMHISYLETTHAMYRPEETRPRKLLLHRKQIDKLFEKVTKDGITIVPLKLYFNA 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K AK+ +A AQGKK YDKR K++ R+ + ++ Sbjct: 118 KNFAKLQIATAQGKKLYDKRADLKEKSLKRESEQAIKN 155 >gi|262038912|ref|ZP_06012256.1| SsrA-binding protein [Leptotrichia goodfellowii F0264] gi|261747077|gb|EEY34572.1| SsrA-binding protein [Leptotrichia goodfellowii F0264] Length = 148 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ N+KA ++Y I EAGI L GTEVKS++ K +I +S+ +E+++ N +I Sbjct: 2 VLARNKKAFHDYFIEDKLEAGIELVGTEVKSVKAGKTSIKESFIRIIKNEVFIMNMHITP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y N N R RKLLL+++EI + + ++ G T++P+ +Y + L K+++ LA+G Sbjct: 62 YEFGNINNLPESRVRKLLLNRKEIEKWASKIKEQGYTIIPLSVYTKKR-LVKMEIGLAKG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE+ K++D ++ +I + Sbjct: 121 KKLHDKRESLKRKDQEKDMKKIQKNF 146 >gi|327405349|ref|YP_004346187.1| SsrA-binding protein [Fluviicola taffensis DSM 16823] gi|327320857|gb|AEA45349.1| SsrA-binding protein [Fluviicola taffensis DSM 16823] Length = 150 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 93/145 (64%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++AR+ Y + F AG+VL+GTE+KS+R K +I ++Y E+ ++++ N ++ Sbjct: 6 VNIKNKRARFEYQLDEVFTAGMVLSGTEIKSIRNGKASILEAYCIVESGQVFIRNMHVSP 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + +NH R +RKLLL+K+EI +L ++ G T+VP+K++ + KG K+++A G Sbjct: 66 YENGSFYNHMARSDRKLLLNKKEIKKLEKWLKTKGNTIVPLKLFLSEKGWLKLEMATGVG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK +DKR K +D R+ R +++ Sbjct: 126 KKLHDKRHDLKAKDDRREMDRAMKK 150 >gi|89898368|ref|YP_515478.1| SsrA-binding protein [Chlamydophila felis Fe/C-56] gi|123483263|sp|Q254F5|SSRP_CHLFF RecName: Full=SsrA-binding protein gi|89331740|dbj|BAE81333.1| ssrA-binding protein [Chlamydophila felis Fe/C-56] Length = 150 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 59/149 (39%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K + NRKA NY ++ + +AG+VLTGTE+KSLR N+ D+Y T E WL N+ Sbjct: 2 SSKEIVSNRKALRNYEVLDTVDAGVVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNAS 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y N +NH RR RKLLL + EI +L + V + G+T++P+ ++ + +G KI L Sbjct: 62 IAPYRFGNIYNHEERRKRKLLLHRYEIQKLESKVSQKGITIIPLGMFLS-RGYVKIRLGC 120 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR+T R+ R+ ++ + Sbjct: 121 CRGKKAHDKRQTIIAREKQREVESAMKRY 149 >gi|224418153|ref|ZP_03656159.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491] gi|253827480|ref|ZP_04870365.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491] gi|313141688|ref|ZP_07803881.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491] gi|253510886|gb|EES89545.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491] gi|313130719|gb|EFR48336.1| SsrA-binding protein [Helicobacter canadensis MIT 98-5491] Length = 152 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 96/148 (64%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KVV+ N+KA Y++ I+ +EAGI L G+EVKS+R +VN+ DS+ E +L ++I Sbjct: 2 KVVATNKKALYDFFILEKYEAGIALEGSEVKSIRAGRVNLKDSFVKIVKGEAFLFQAHIS 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 N + +R RKLLL K+EI +L+ + GM++V +K+YFN + AK+++ALA Sbjct: 62 ALETTNRHYKPDEKRPRKLLLHKKEIDKLFGKSQVGGMSIVALKLYFNKRNKAKLEIALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET K++ +R+ + L+E Sbjct: 122 KGKNLHDKRETLKEKIQNREIAQTLKEF 149 >gi|149372296|ref|ZP_01891484.1| SsrA-binding protein [unidentified eubacterium SCB49] gi|149354686|gb|EDM43249.1| SsrA-binding protein [unidentified eubacterium SCB49] Length = 155 Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSY 69 K V N+KAR+ Y ++ S++AGIVL GTE+K++R K +I++S+ F + E+++ N Sbjct: 5 KNVKIKNKKARFEYELLDSYDAGIVLAGTEIKAIREGKASIAESFCEFNDRSELFVINMT 64 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + EY A FNH P+ RKLLL++ E+ +L V+ G+T++P +Y N KGLAK+ ++L Sbjct: 65 VQEYSHATHFNHSPKSERKLLLNRNELKKLEKEVQNSGLTIIPTLLYTNDKGLAKMRISL 124 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GKK YDKRE K RD R R+ + N Sbjct: 125 ARGKKLYDKRENIKDRDNKRDLSRLKKSFN 154 >gi|322379157|ref|ZP_08053553.1| SsrA-binding protein [Helicobacter suis HS1] gi|322381053|ref|ZP_08055081.1| SsrA-binding protein [Helicobacter suis HS5] gi|321146523|gb|EFX41395.1| SsrA-binding protein [Helicobacter suis HS5] gi|321148420|gb|EFX42924.1| SsrA-binding protein [Helicobacter suis HS1] Length = 175 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 N+KA ++Y I+ + EAGIVL G+EVK++RV +VN+ D++ E +L ++ Sbjct: 26 IRNKKAFFDYEILETLEAGIVLAGSEVKAIRVGRVNLKDNFVRIIRGEAFLFGVHVGHLP 85 Query: 75 QAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 AN + RR RKLLL K++IH+ V + +++V +++YFNAK K+ +AL +GK Sbjct: 86 TANVYYKPDERRPRKLLLHKKQIHKWSVEVGQKRLSIVALQLYFNAKNRVKLQIALVKGK 145 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 K YDKRE+ K+R DR+ LR H Sbjct: 146 KLYDKRESMKQRVLDREAKSQLRNH 170 >gi|255531455|ref|YP_003091827.1| SsrA-binding protein [Pedobacter heparinus DSM 2366] gi|255344439|gb|ACU03765.1| SsrA-binding protein [Pedobacter heparinus DSM 2366] Length = 149 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 96/144 (66%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 + N++A ++YHI+ + AG+ L GTE+K++R K N++D++ F + +++ N +I E Sbjct: 5 IQIKNKRAYFDYHIIDKYNAGLALLGTEIKAIRQGKANMTDAFCMFIGNILYVRNLHISE 64 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y ++ +H +R+R LLL K+E+ +L G T+VP++I+ N +G AKI++ALAQG Sbjct: 65 YSHSSFHHHEIKRDRALLLHKKELKKLKVKSEEKGYTIVPLRIFTNERGFAKIEIALAQG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKR++ K R+ R+ R ++ Sbjct: 125 KKEFDKRDSIKDRESKREMDRAMK 148 >gi|330836547|ref|YP_004411188.1| SsrA-binding protein [Spirochaeta coccoides DSM 17374] gi|329748450|gb|AEC01806.1| SsrA-binding protein [Spirochaeta coccoides DSM 17374] Length = 157 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 89/157 (56%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + G KV+ NRKA +NY +V E GI LTGTEVKS+R S+ + SDSY + D Sbjct: 1 MAKFGKDDVKVLQTNRKAYFNYEMVEDLECGIALTGTEVKSVRESRFSFSDSYVKIDPDG 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 + L + I Y N NH R R+LL K+EI + V G TLVP K+Y L Sbjct: 61 LKLISFTIQPYTHGNIHNHKSDRIRRLLAKKQEIKKWRRKVDEKGFTLVPTKVYLRGN-L 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+ ++LA+GK+ +DKR + K+RD DR R ++ N Sbjct: 120 IKMQVSLARGKQLHDKRASLKERDMDRDARREMKLSN 156 >gi|223557953|gb|ACM90960.1| SsrA-binding protein [uncultured bacterium URE12] Length = 163 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 89/161 (55%), Gaps = 4/161 (2%) Query: 1 MSLKSRGNPPKK---VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 M + + K ++ NRKAR++Y I + EAG+ L G EVKSLR+ I+ ++A Sbjct: 1 MKKAKKSDEKDKNFEQIATNRKARHDYLIEDTIEAGLALEGPEVKSLRLKHCVITSAFAR 60 Query: 58 FENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 E ++L I Y P R RKLLL K EI RL AV GM LV +++YF Sbjct: 61 VEPRGVYLYGMQISPYAFNTLTQLDPVRTRKLLLKKTEIRRLSRAVEIKGMALVALEVYF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +G AK+ + L +GKK DK+ET KKRD DR+ R +E Sbjct: 121 K-RGWAKVLIGLGRGKKAADKKETIKKRDIDREMRRDFKEK 160 >gi|238854860|ref|ZP_04645190.1| SsrA-binding protein [Lactobacillus jensenii 269-3] gi|260664147|ref|ZP_05865000.1| SsrA-binding protein [Lactobacillus jensenii SJ-7A-US] gi|282933938|ref|ZP_06339286.1| SsrA-binding protein [Lactobacillus jensenii 208-1] gi|313472362|ref|ZP_07812854.1| SsrA-binding protein [Lactobacillus jensenii 1153] gi|238832650|gb|EEQ24957.1| SsrA-binding protein [Lactobacillus jensenii 269-3] gi|239529781|gb|EEQ68782.1| SsrA-binding protein [Lactobacillus jensenii 1153] gi|260562033|gb|EEX28002.1| SsrA-binding protein [Lactobacillus jensenii SJ-7A-US] gi|281302027|gb|EFA94281.1| SsrA-binding protein [Lactobacillus jensenii 208-1] Length = 151 Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats. Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 1/150 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 V++ N+KA ++Y I + EAGI LTGTE+KS+R ++ + D Y N +L Sbjct: 2 KKEANNVLAQNKKASHDYFIKETIEAGIALTGTEIKSVRARRIQLRDGYVQIYNGNAYLE 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 N +I EY Q N +NH P R R+LLL K+EI +L + GM ++P+K+Y KG AKI Sbjct: 62 NVHISEYKQGNIYNHDPLRRRQLLLHKKEIRKLAEVQAQQGMAIIPLKVYLK-KGFAKIL 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILR 156 L + QGKK YDKRET KKRD +R+ R R Sbjct: 121 LGIGQGKKQYDKRETIKKRDQERELRRKYR 150 >gi|332044185|gb|EGI80379.1| SsrA-binding protein [Lacinutrix algicola 5H-3-7-4] Length = 151 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYIP 71 + N+KA++ Y I+ + AGIVLTGTE+KS+R SK +I++++ F E +E+++ N I Sbjct: 5 INILNKKAKFQYEILDKYTAGIVLTGTEIKSIRDSKASIAEAFCEFNEQNELFVINMTIQ 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY+ N +NH P+ RKLLL++RE+ +L V G+T++P++++ N KG AK+ +ALA+ Sbjct: 65 EYVYGNYYNHAPKAERKLLLNRRELKKLEKEVNTSGLTIIPLRLFINDKGYAKLVIALAK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRET K RD R RI + Sbjct: 125 GKKLYDKRETIKDRDNKRNLDRIKKNF 151 >gi|183220800|ref|YP_001838796.1| SsrA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910900|ref|YP_001962455.1| SsrA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775576|gb|ABZ93877.1| ssrA/tmRNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779222|gb|ABZ97520.1| SsrA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 162 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 1/159 (0%) Query: 1 MSLKSRGNPPKKVVSD-NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M + + P+ N+KA++N+ ++ SFEAG+VLTG+EVKSLR K N++D +A Sbjct: 1 MGKTKKDDKPRGTDPLINKKAKFNFELLDSFEAGVVLTGSEVKSLREKKGNLTDCFAKVR 60 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E++L N IP Y NH R RKLLL +EI ++ +++ G+ LV + +F Sbjct: 61 NGEVFLENFQIPPYKNGGYANHPEIRPRKLLLKAKEIEKIDRSIKEKGLVLVATRCFFKN 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L KID+ALA+ KK YDKR+ +K++ R ++EH Sbjct: 121 NRLVKIDVALAKPKKLYDKRDDIQKKEAKIDMERAMKEH 159 >gi|33862172|ref|NP_893733.1| SsrA-binding protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|39932292|sp|Q7UZP2|SSRP_PROMP RecName: Full=SsrA-binding protein gi|33634390|emb|CAE20075.1| tmRNA binding protein SmpB [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 175 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 62/166 (37%), Positives = 94/166 (56%), Gaps = 11/166 (6%) Query: 2 SLKSRGNPPKKVV---------SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNIS 52 ++ N K++ S+NR A++ Y I+ + EAGI L GTEVKS+R VN+ Sbjct: 11 AMAKVSNKANKIIKKEAVFKRLSENRYAKFQYEILETIEAGIELLGTEVKSIRNGSVNLR 70 Query: 53 DSYATFENDEIWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLV 111 D Y +F + EI L N +I + FNH P RNRKLLL K+EI +L + G+T++ Sbjct: 71 DGYCSFRDGEILLLNVHISPHKNVGPFFNHDPLRNRKLLLHKKEIVKLKYNTEKKGLTII 130 Query: 112 PMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 P+ IY K+ + + +GKK +DKR+ +K+RD R+ L+ Sbjct: 131 PLSIYLKGS-WIKLTIGIGKGKKLHDKRQADKQRDIKREIKTALKR 175 >gi|86133403|ref|ZP_01051985.1| SmpB protein [Polaribacter sp. MED152] gi|85820266|gb|EAQ41413.1| SmpB protein [Polaribacter sp. MED152] Length = 153 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 99/150 (66%), Gaps = 1/150 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSY 69 KK+ N+KAR+ + I+ + AGI LTGTE+KS+R S+ I++S+ F E E+++ N Y Sbjct: 3 KKINIQNKKARFEFEILDKYVAGIQLTGTEIKSIRQSQARITESFCEFNERGELFIVNMY 62 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I EY+ N FNH P+ R+LLL+KRE+ L V G T+VP+K++ N +G AK+++AL Sbjct: 63 IKEYMYGNHFNHKPKSERRLLLNKRELKSLKKDVEAKGNTIVPLKLFINDRGFAKLEIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREHN 159 A+GK+ +DKR K RD R RI + N Sbjct: 123 AKGKQTHDKRNVIKDRDNKRDLARIKKSFN 152 >gi|253575476|ref|ZP_04852813.1| SsrA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251845123|gb|EES73134.1| SsrA-binding protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 161 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 104/159 (65%), Gaps = 4/159 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M++ + KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R +VNI D++AT N Sbjct: 1 MNMGKKSE--GKVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRVNIGDAFATIRN 58 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EI++ N +I + Q NRFN P R RKLL+ K +I++L +++G T+VP+KIY Sbjct: 59 GEIFIHNMHISPFEQGNRFNPADPTRTRKLLMHKAQINKLLGLSKQEGYTIVPLKIYIR- 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GKK YDKR+ KRD R R LRE Sbjct: 118 NGYAKLLLGLGKGKKQYDKRDAAAKRDAQRDIQRALREK 156 >gi|212696116|ref|ZP_03304244.1| hypothetical protein ANHYDRO_00652 [Anaerococcus hydrogenalis DSM 7454] gi|325846524|ref|ZP_08169439.1| SsrA-binding protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676745|gb|EEB36352.1| hypothetical protein ANHYDRO_00652 [Anaerococcus hydrogenalis DSM 7454] gi|325481282|gb|EGC84323.1| SsrA-binding protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 147 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 65/147 (44%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KAR++Y + +EAGI L G EVKS+R KV+I +S+ E+++ N + Sbjct: 2 KILANNKKARHDYFLEEKYEAGIELKGNEVKSIREGKVSIKESHVGDYKGELFIYNMNVT 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q+ N P R RKLLL K+EI +L V + G T++ KIY GL K ++ALA+ Sbjct: 62 PYKQSYEKNIDPIRTRKLLLHKKEIDKLIGKVSQAGYTMIVNKIYLKE-GLIKAEIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKNYDKRET KK D R+ R L+ + Sbjct: 121 GKKNYDKRETIKKNDAKRKIERALKNY 147 >gi|188586604|ref|YP_001918149.1| SsrA-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351291|gb|ACB85561.1| SsrA-binding protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 154 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 94/146 (64%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V++ NRKA + + I +EAGI L GTEVKS + VN+ D +A E EI+L N +I Sbjct: 7 VLARNRKAEHEFFIEERYEAGIELKGTEVKSCKNRSVNLKDGFAKIEKGEIFLYNVHISH 66 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N+FNH P R RKLLL KREI RL ++ TL+P+ Y G+ K++LALA+G Sbjct: 67 YNEGNQFNHEPTRTRKLLLHKREIKRLLGLTQQRRYTLIPLTFYVKD-GIIKVELALAKG 125 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K+ +DKRE+ K++ +R+ + L+E Sbjct: 126 KQKHDKRESIKRKTMEREMEKALKEK 151 >gi|126661808|ref|ZP_01732807.1| SsrA-binding protein [Flavobacteria bacterium BAL38] gi|126625187|gb|EAZ95876.1| SsrA-binding protein [Flavobacteria bacterium BAL38] Length = 150 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 103/146 (70%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 V N++A+++Y I+ + AGIVLTGTE+KS+R+ K +I++S+ F + E+++ NS I E Sbjct: 5 VNILNKRAKFDYEILDKYTAGIVLTGTEIKSIRLGKASITESFCEFSDGELFVINSNIEE 64 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 YL +NH + RKLLL+K+E+ +L+ G+T+VP++++ N KGLAK+D+AL +G Sbjct: 65 YLYGTHYNHKTKSERKLLLNKKELKKLFKDSDNKGLTIVPLRLFTNEKGLAKLDIALCRG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KKNYDKRE+ K++D R RI + Sbjct: 125 KKNYDKRESLKEQDTKRDLDRIKKSF 150 >gi|330984198|gb|EGH82301.1| SsrA-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 163 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 88/147 (59%), Gaps = 2/147 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ NRKAR++Y + + F+AGI L G EVKSLR K ++DSY + E ++ I Sbjct: 14 TIAQNRKARHDYAVEQKFQAGIALEGWEVKSLRAGKAQLTDSYVLLKGGEAFVIGLQIQP 73 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + P R RKLLLS++E+ RL ++V + G T V + + ++ L K +ALA+ Sbjct: 74 LQTASTHVEADPLRTRKLLLSRKELDRLTSSVEQKGYTAVVLSLEWSKH-LVKCTVALAK 132 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKKN++KRET K+RD +Q + ++ Sbjct: 133 GKKNFEKRETLKERDAKKQIDQAFKQR 159 >gi|300775076|ref|ZP_07084939.1| SsrA-binding protein [Chryseobacterium gleum ATCC 35910] gi|300506891|gb|EFK38026.1| SsrA-binding protein [Chryseobacterium gleum ATCC 35910] Length = 153 Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 65/150 (43%), Positives = 98/150 (65%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K V NR+AR+ Y I+ +EAG+VLTGTE+KSLR SK +I++S+ F + E+++ N Sbjct: 3 KIEKTVNILNRRARFEYEILEEYEAGMVLTGTEIKSLRSSKASITESFCQFIDGELYIIN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I EY +NH +R RKLLL K+E+ +L ++ G T++P+K+Y +G AK+ + Sbjct: 63 MMIDEYKLGTFYNHKTKRERKLLLHKKELQKLEKKLKDAGNTIIPLKLYITDRGKAKVLI 122 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 AL +GKK +DKRE K R+ R RIL++ Sbjct: 123 ALGRGKKLFDKREAIKDRENKRNLDRILKK 152 >gi|325954864|ref|YP_004238524.1| SsrA-binding protein [Weeksella virosa DSM 16922] gi|323437482|gb|ADX67946.1| SsrA-binding protein [Weeksella virosa DSM 16922] Length = 167 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 64/153 (41%), Positives = 97/153 (63%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 K++ N++AR+ Y ++ F+AGI L GTE+KS+R+ K +I DS+ +N E++ Sbjct: 14 KYSKVSKEISIKNKRARFEYELLEGFDAGIQLFGTEIKSIRLGKASIVDSFCQMKNGELY 73 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + N +I EY +NH P+R RKLLL K+E+ +L + G+T+VP +Y N KGLAK Sbjct: 74 IINMFIDEYAWGTHYNHLPKRERKLLLQKKELKKLERKTKETGLTIVPTTLYINDKGLAK 133 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + + LA+GKK YDKRE K +D R RI++ Sbjct: 134 LRIYLAKGKKLYDKREALKGKDLKRDLERIIKN 166 >gi|123967038|ref|YP_001012119.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9515] gi|187629771|sp|A2BZ01|SSRP_PROM5 RecName: Full=SsrA-binding protein gi|123201404|gb|ABM73012.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9515] Length = 165 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K +++NR A++ Y I + EAGI L GTEVKS+R VN+ D Y +F + EI L N +I Sbjct: 20 KRLAENRYAKFQYEISETIEAGIELLGTEVKSIRNGNVNLRDGYCSFRDGEILLLNVHIS 79 Query: 72 EYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + + FNH P RNRKLLL K+EI +L + + G+T++P+ IY K+ + + Sbjct: 80 PHKNVGSFFNHDPLRNRKLLLHKKEIFKLKSNTEKKGLTIIPLSIYLKGS-WIKLTIGIG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157 +GKK +DKR+ +K++D R+ L+ Sbjct: 139 KGKKLHDKRQADKQKDIKREIKTALKR 165 >gi|319941864|ref|ZP_08016185.1| SsrA-binding protein [Sutterella wadsworthensis 3_1_45B] gi|319804517|gb|EFW01387.1| SsrA-binding protein [Sutterella wadsworthensis 3_1_45B] Length = 169 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 93/160 (58%), Gaps = 4/160 (2%) Query: 1 MSLKSRGNPPKKVV--SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ S K N++A Y+Y I +EAG+VL G EVKS+R + I+ ++ Sbjct: 1 MAANSNKKTTKNTQPRILNKRATYDYAIEERYEAGLVLHGWEVKSVRAGRAQINLAHIYI 60 Query: 59 ENDEIWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 + E++L N+++ Q R RKLL+ +REI +L V R TLVP+ ++F Sbjct: 61 RDGELFLCNAHMNPADQACTHETLETNRTRKLLMHRREIMKLIGRVERQSYTLVPLNLHF 120 Query: 118 NAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 G K+DLALA+GK+ Y+KR+ E K++W R++ RI+++ Sbjct: 121 K-NGRVKVDLALARGKREYEKRDDESKKEWKREQERIMKK 159 >gi|298373175|ref|ZP_06983165.1| SsrA-binding protein [Bacteroidetes oral taxon 274 str. F0058] gi|298276079|gb|EFI17630.1| SsrA-binding protein [Bacteroidetes oral taxon 274 str. F0058] Length = 150 Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats. Identities = 65/146 (44%), Positives = 98/146 (67%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 ++ N+KA ++Y ++ + AGIVL GTE+KS+R K + DSY F+ E+W+ N +I Sbjct: 5 SQIEIKNKKASFHYELLTKYTAGIVLYGTEIKSIREGKAGLVDSYCAFDKGELWVINMHI 64 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + N +NH R RKLLL+KRE+ ++ AV+ G+T+VP ++Y N KGLAK+D+A+A Sbjct: 65 AAFRLGNFYNHEAARTRKLLLTKRELRKIERAVKETGLTIVPTRLYINDKGLAKLDIAVA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156 +GKK YDKRE+ K++D R R R Sbjct: 125 RGKKLYDKRESIKEKDLRRDMERYRR 150 >gi|256545219|ref|ZP_05472584.1| SsrA-binding protein [Anaerococcus vaginalis ATCC 51170] gi|256399046|gb|EEU12658.1| SsrA-binding protein [Anaerococcus vaginalis ATCC 51170] Length = 147 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 63/147 (42%), Positives = 93/147 (63%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA+++Y + +EAGI L G EVKS+R KV+I +S+ E+++ N + Sbjct: 2 KILANNKKAKHDYFLEEKYEAGIELKGNEVKSIREGKVSIKESHVGDYKGELFIYNMNVT 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y Q+ N P R RKLLL K+EI +L V + G T++ KIY GL K ++ALA+ Sbjct: 62 PYEQSYEKNIDPIRTRKLLLHKKEIDKLIGKVSQAGYTMIVNKIYLKE-GLIKAEIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRET KK D R+ R L+ + Sbjct: 121 GKKIYDKRETIKKNDAKRKIERALKNY 147 >gi|261749325|ref|YP_003257010.1| SsrA-binding protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497417|gb|ACX83867.1| SsrA-binding protein [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 143 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 64/139 (46%), Positives = 94/139 (67%) Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76 NRKAR+ Y + + AGI L GTEVKS+R+++ NI+DS+ N E++ N YI EY Sbjct: 5 NRKARFQYKYIEEYIAGIQLFGTEVKSIRLNQANITDSFCQIRNGELYSINMYIAEYKFG 64 Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 +NH +R+RKLLL+K+E+ R+ ++ G+TL+P K++FN KG K+ + LA+GKK Y Sbjct: 65 TNWNHQSKRDRKLLLTKKELIRIEKKLKEPGLTLIPTKLFFNDKGYIKVQIFLAKGKKTY 124 Query: 137 DKRETEKKRDWDRQKHRIL 155 DKRE+ + RD R+ R L Sbjct: 125 DKRESIRNRDILRELQRSL 143 >gi|311748122|ref|ZP_07721907.1| SsrA-binding protein [Algoriphagus sp. PR1] gi|126574766|gb|EAZ79147.1| SsrA-binding protein [Algoriphagus sp. PR1] Length = 155 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 98/154 (63%), Gaps = 2/154 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + N+KA + + + ++ G+VL GTE+KS+R SK+++++++ F Sbjct: 1 MAKSKKFEKIINI--KNKKASFQFEFIDTYTCGMVLKGTEIKSIRESKISLTEAFCVFLR 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ +I Y A +NH R+RKLLLSK+E+ +L + G++++P++I+ N + Sbjct: 59 GELYVRQMHIAPYSMAANYNHAAIRDRKLLLSKKELEKLETKSQEKGLSIIPVRIFINDR 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154 GLAK+++AL +GKK +DKR K++D R+ R+ Sbjct: 119 GLAKMEIALGRGKKLHDKRHDLKEKDAKRELQRM 152 >gi|33864670|ref|NP_896229.1| SsrA-binding protein [Synechococcus sp. WH 8102] gi|39932287|sp|Q7U9W8|SSRP_SYNPX RecName: Full=SsrA-binding protein gi|33632193|emb|CAE06649.1| tmRNA binding protein SmpB [Synechococcus sp. WH 8102] Length = 166 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I Sbjct: 20 RMLADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + A FNH P R RKLL +REI +L + + G+ L+P+ I+ K+ + L Sbjct: 80 PHSHAGAYFNHDPLRTRKLLAHRREIDKLRGQLDQKGLALIPLNIHLKGS-WIKLTIGLG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR EK++ ++ + Sbjct: 139 KGRKLHDKRAAEKEKQSKKEVKAAIARF 166 >gi|297566456|ref|YP_003685428.1| SsrA-binding protein [Meiothermus silvanus DSM 9946] gi|296850905|gb|ADH63920.1| SsrA-binding protein [Meiothermus silvanus DSM 9946] Length = 143 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 65/137 (47%), Positives = 96/137 (70%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 +NR+AR++Y I+ ++EAG+ L GTEVKSLR +V+ + S+A FE +E++L N YI Y + Sbjct: 5 ENRRARHDYEILETYEAGLSLQGTEVKSLRAGQVDFTGSFARFEGEELFLENLYIAPYEK 64 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 + NH PRR RKLLL + E+ +L + V + G+TLVP+KIYFN +G AK+ L LA+GK+ Sbjct: 65 GSYTNHDPRRLRKLLLHRHELDKLRSRVEQKGLTLVPLKIYFNDRGYAKLLLGLARGKRA 124 Query: 136 YDKRETEKKRDWDRQKH 152 Y K+ +KK+ R Sbjct: 125 YQKKADDKKQAVQRALE 141 >gi|313206518|ref|YP_004045695.1| ssra-binding protein [Riemerella anatipestifer DSM 15868] gi|308922587|gb|ADO51648.1| SmpB [Riemerella anatipestifer] gi|312445834|gb|ADQ82189.1| SsrA-binding protein [Riemerella anatipestifer DSM 15868] gi|315023541|gb|EFT36545.1| tmRNA-binding protein SmpB [Riemerella anatipestifer RA-YM] gi|325336034|gb|ADZ12308.1| tmRNA-binding protein [Riemerella anatipestifer RA-GD] Length = 152 Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats. Identities = 65/151 (43%), Positives = 100/151 (66%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 N + V N++AR+ Y I+ EAGIVLTGTE+K+LR SK +I++S+ F E+++ N Sbjct: 2 NIQRTVSISNKRARFEYEILEQVEAGIVLTGTEIKALRSSKASITESFCQFIEGELYVIN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I EY +NH +R RKLLL KRE+ + ++ G T+VP+K+Y N +G AK+ + Sbjct: 62 MTIDEYKLGTFYNHKIKRERKLLLHKRELDKWSKKMKDVGNTIVPLKVYINDRGKAKVLI 121 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ALA+GKK YDKRE K+R+ + +R+ +++ Sbjct: 122 ALARGKKLYDKREAIKEREAKVKLNRVFKKN 152 >gi|154498534|ref|ZP_02036912.1| hypothetical protein BACCAP_02524 [Bacteroides capillosus ATCC 29799] gi|150272602|gb|EDM99787.1| hypothetical protein BACCAP_02524 [Bacteroides capillosus ATCC 29799] Length = 155 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 60/152 (39%), Positives = 91/152 (59%), Gaps = 1/152 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 K++S N KA ++Y I +EAGI L GTEVKS+R VN+ D++ ++ E+ + Sbjct: 2 DQKGIKIISKNPKAYHDYFIEDKYEAGIELCGTEVKSVRQGNVNLKDAFCIVKDGELSVV 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 +I Y Q N FN PRR R+LL+ KREI RL+ + DG +L+P+ +YF K++ Sbjct: 62 GMHISPYEQGNIFNKDPRRTRRLLMHKREILRLFQKTKVDGYSLIPLSLYFR-NARVKVE 120 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + LA+GKK YDKR+ +D R+ R ++ Sbjct: 121 VGLAKGKKLYDKRDAAAAKDAKREMDRAMKSR 152 >gi|89891283|ref|ZP_01202790.1| SsrA-binding protein [Flavobacteria bacterium BBFL7] gi|89516595|gb|EAS19255.1| SsrA-binding protein [Flavobacteria bacterium BBFL7] Length = 153 Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 105/156 (67%), Gaps = 4/156 (2%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + N K NRKAR+ Y I+ + AGIVL GTE+K++R+ K +I++ + F + E Sbjct: 1 MKFKNNIEIK----NRKARFEYEILDKYMAGIVLGGTEIKAIRLGKASIAEGFCEFTDGE 56 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +W+ N + EY A FNH P++ RKLLL+++E+ +L V G T++P++++ N KGL Sbjct: 57 LWIINMTVQEYSHATYFNHQPKQARKLLLNRKELKKLEKDVNSSGNTIIPLRLFINDKGL 116 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+D+ALA+GKK +DKRET K RD ++ +I + + Sbjct: 117 AKMDIALAKGKKLHDKRETIKDRDNKKRLDQIKKAY 152 >gi|313888772|ref|ZP_07822433.1| SsrA-binding protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845141|gb|EFR32541.1| SsrA-binding protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 151 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 94/154 (61%), Gaps = 6/154 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS + +++N+KA + Y I ++EAGI L GTEVKS+R VNI D+Y Sbjct: 1 MSKEKNDA-----IANNKKASHLYFIEDTYEAGIELVGTEVKSIRAGHVNIKDAYCDINK 55 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI+++ +I Y Q N +N P R RKLL+ K EI RL ++G T++P+K+Y + Sbjct: 56 GEIFVSGMHISPYEQGNIYNVDPMRKRKLLMHKAEILRLEKVKTQEGYTIIPLKVYLK-R 114 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154 G KI +A A+GKK +DKRET KKR+ D++ + Sbjct: 115 GRVKILIAKAKGKKLWDKRETMKKREVDKRLRQA 148 >gi|294507639|ref|YP_003571697.1| SsrA-binding protein [Salinibacter ruber M8] gi|294343967|emb|CBH24745.1| SsrA-binding protein [Salinibacter ruber M8] Length = 154 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 84/135 (62%), Gaps = 2/135 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNS 68 +VV+ N+KA++ Y I + EAG+VL G+EVKS+R K ++ +Y + + E+ + Sbjct: 4 GTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHGM 63 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 YI Y +A F H PRRNRKLLL ++I + ++G T+VP+ +YF G K+ + Sbjct: 64 YIKPYEEAGPFGHEPRRNRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRD-GWVKLKIG 122 Query: 129 LAQGKKNYDKRETEK 143 +A+G++ +DKR+ K Sbjct: 123 IAKGRQKHDKRQAIK 137 >gi|149196891|ref|ZP_01873944.1| SsrA-binding protein [Lentisphaera araneosa HTCC2155] gi|149140001|gb|EDM28401.1| SsrA-binding protein [Lentisphaera araneosa HTCC2155] Length = 147 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 95/145 (65%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ NRKAR+NY I+ +EAG+ L GTEVKS R ++I++++ FE+ E W+ S+I Y Sbjct: 3 IATNRKARFNYEIIEKYEAGVELQGTEVKSCRNKSISIAEAFVAFESGEAWMRESHISPY 62 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 Q NR NH P+R R+LLL KREI +L V + G++++P+ ++ +G KI + L +GK Sbjct: 63 EQGNRNNHEPKRKRRLLLHKREIRKLMREVEQKGLSVIPLSVHLK-RGKIKISIGLCRGK 121 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 DKR++ KKRD DR R L+ Sbjct: 122 NTVDKRDSIKKRDNDRALQR-LKNK 145 >gi|313674187|ref|YP_004052183.1| ssra-binding protein [Marivirga tractuosa DSM 4126] gi|312940885|gb|ADR20075.1| SsrA-binding protein [Marivirga tractuosa DSM 4126] Length = 154 Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 54/152 (35%), Positives = 96/152 (63%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + V N+KAR+ Y + ++ GIVL GTE+K++R+ KV++ ++Y E Sbjct: 1 MSDKKEFSTSVTVKNKKARFEYEWLDTYLTGIVLQGTEIKAIRLHKVSLQEAYCYIHRGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +++ +I Y +NH +R RKLLL K+EI ++ + G+TL+P K++ N +GL Sbjct: 61 VFVKGMHIGHYELGTHYNHEEKRERKLLLKKQEIEKIRKRMEEKGLTLIPTKLFINNRGL 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154 AK+++ALA+GKK +DKR++ K++D R+ ++ Sbjct: 121 AKLEIALAKGKKMHDKRDSIKEKDMKRELSKM 152 >gi|302326745|gb|ADL25946.1| SsrA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 160 Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 3/160 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE- 59 MSLK V NRKA + Y + +FE GI+L G+EVKS+R K + +++ + Sbjct: 1 MSLKMIKKESSTPVIQNRKANHLYFVDETFEVGIMLIGSEVKSIRNGKCTLGEAWIDIDE 60 Query: 60 -NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 DE+WL ++I EYL ANRFNH+P R RKLL EI ++ A G T++P+K+YF Sbjct: 61 NKDELWLVGAHIDEYLFANRFNHFPARRRKLLAHTHEIQKMRKAKELKGCTIIPLKMYFK 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +AK+++ + +GK +DKR+ RD + R + H Sbjct: 121 NR-IAKLEVGICRGKDQHDKRQDILVRDAKMEMARAAKAH 159 >gi|213964246|ref|ZP_03392478.1| SsrA-binding protein [Capnocytophaga sputigena Capno] gi|213953107|gb|EEB64457.1| SsrA-binding protein [Capnocytophaga sputigena Capno] Length = 152 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 66/151 (43%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLT 66 K V N++A++ Y I+ + AGIVL GTE+KS+R+ K +I++S+ F + E+++ Sbjct: 2 KIQKTVQILNKRAKFEYEILDKYTAGIVLVGTEIKSIRLGKASIAESFCEFNDKGELFVI 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 NS I Y +NH P+ RKLLL K+E+ +L V+ G+T+VP+K++ N KGLAK+D Sbjct: 62 NSTIEAYDFGTHYNHRPKTERKLLLQKKELRKLNKEVKNSGLTIVPLKLFINDKGLAKMD 121 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +AL +GKK YDKRET K RD R R+++ Sbjct: 122 IALVRGKKLYDKRETIKDRDNKRNLDRLMKH 152 >gi|32265620|ref|NP_859652.1| SsrA-binding protein [Helicobacter hepaticus ATCC 51449] gi|39932310|sp|Q7VJX1|SSRP_HELHP RecName: Full=SsrA-binding protein gi|32261668|gb|AAP76718.1| tmRNA-binding protein SmpB [Helicobacter hepaticus ATCC 51449] Length = 155 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 60/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 P +V++ N+KA ++Y I++S E+GIVL G+EVKS+R +VN+ DS+ E +L N++ Sbjct: 2 PIRVIAKNKKAYFDYEILQSLESGIVLQGSEVKSIRAGRVNLKDSFIKIIRGEAFLFNAH 61 Query: 70 IPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I F RR RKLLL K+EI +L+ +V ++ +++VP+ IYFN K K+ +A Sbjct: 62 ISFLQTTYTHFKPNERRERKLLLHKKEIDKLFGSVSKESLSIVPLNIYFNQKNKIKLCIA 121 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L +GKK +DKRE+ KK+ +R+ ++ + Sbjct: 122 LVRGKKLHDKRESIKKKMLEREARAHMKSY 151 >gi|325104714|ref|YP_004274368.1| SsrA-binding protein [Pedobacter saltans DSM 12145] gi|324973562|gb|ADY52546.1| SsrA-binding protein [Pedobacter saltans DSM 12145] Length = 152 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 4/156 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + N+KA + Y+I+ F AGI L GTE+KS+R SK NI DS+ F N Sbjct: 1 MAAK----ITNNINIRNKKATFEYNILEKFVAGIKLLGTEIKSIRQSKANIGDSFCAFIN 56 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+++ N I EY + +NH +R+RKLLL+K+E+ +L G+T++P++I+ N + Sbjct: 57 GELYVRNMDIAEYSHGSFYNHEAKRDRKLLLTKKELKKLIIKGEDKGLTIIPLRIFINER 116 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 G AK+++ALAQGKK++DKRE+ K+RD R+ R+++ Sbjct: 117 GFAKMEIALAQGKKSFDKRESIKERDIKREMDRMVK 152 >gi|269123483|ref|YP_003306060.1| SsrA-binding protein [Streptobacillus moniliformis DSM 12112] gi|268314809|gb|ACZ01183.1| SsrA-binding protein [Streptobacillus moniliformis DSM 12112] Length = 144 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 61/142 (42%), Positives = 95/142 (66%), Gaps = 1/142 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++++N+KA ++Y I + AGI L GTEVKS+++ KV+I +S+ +E+W+ ++ Sbjct: 2 KILANNKKAYFDYFIEDEYVAGIELKGTEVKSIKLGKVSIKESFVRIIKNEVWILGMFVS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y N +N R RKLLL+KREI +L V+ G T+VP+ + FN +GL K+ +A A+ Sbjct: 62 QYTFGNIYNVNETRVRKLLLNKREIKKLSEKVKEQGYTIVPLTV-FNQEGLIKVKIATAR 120 Query: 132 GKKNYDKRETEKKRDWDRQKHR 153 GKKNYDKRE+ K+RD R + Sbjct: 121 GKKNYDKRESIKQRDILRDIKK 142 >gi|56966939|pdb|1WJX|A Chain A, Crystal Sturucture Of Tt0801 From Thermus Thermophilus gi|309319907|pdb|3IZ4|B Chain B, Modified E. Coli Tmrna In The Resume State With The Trna-Like Domain In The Ribosomal P Site Interacting With The Smpb Length = 122 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 64/120 (53%), Positives = 86/120 (71%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y Sbjct: 3 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 62 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK Sbjct: 63 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 122 >gi|33241225|ref|NP_876167.1| SsrA-binding protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|39932301|sp|Q7V9Q3|SSRP_PROMA RecName: Full=SsrA-binding protein gi|33238755|gb|AAQ00820.1| tmRNA-binding protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 165 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NR AR+ Y I+ EAGI L GTEVKS+R VN+ D + + L N +I + Sbjct: 21 LAENRYARHQYEILEDIEAGIELLGTEVKSIRAGNVNLRDGFCLIREGSLLLHNVHISPF 80 Query: 74 LQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 A + FNH P R RKLL ++EI++L V R G+TLVP+ I+ KI + L +G Sbjct: 81 NNAGSFFNHEPLRVRKLLAHRKEINKLETQVNRKGLTLVPLNIFLKGS-WIKITIGLGKG 139 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 +K +DKRE EK++ +R+ L + Sbjct: 140 RKLHDKRENEKRKQSEREVKSALARY 165 >gi|289549235|ref|YP_003474223.1| SsrA-binding protein [Thermocrinis albus DSM 14484] gi|289182852|gb|ADC90096.1| SsrA-binding protein [Thermocrinis albus DSM 14484] Length = 157 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 64/145 (44%), Positives = 90/145 (62%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSK-VNISDSYATFENDEIWLTNSYIP 71 V+ NR+AR Y ++ ++EAGIVL G EVK+LR + V+ DS+ EN E WL N YI Sbjct: 8 TVAYNREARAEYEVIETYEAGIVLEGPEVKALRNKQTVSFKDSFVRIENGEAWLYNLYIA 67 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y A P R RKLLL KREI RL V+ G T++P+++YF K+++AL + Sbjct: 68 PYRYATIKPPDPLRKRKLLLHKREILRLMGKVQEKGYTIIPLRVYFK-NNKVKVEIALVR 126 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +D+RE ++RD RQ R ++ Sbjct: 127 GKKQHDRREELRERDLRRQLEREIK 151 >gi|83815449|ref|YP_445744.1| SsrA-binding protein [Salinibacter ruber DSM 13855] gi|123528680|sp|Q2S237|SSRP_SALRD RecName: Full=SsrA-binding protein gi|83756843|gb|ABC44956.1| SsrA-binding protein [Salinibacter ruber DSM 13855] Length = 154 Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 85/135 (62%), Gaps = 2/135 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNS 68 +VV+ N+KA++ Y I + EAG+VL G+EVKS+R K ++ +Y + + E+ + Sbjct: 4 GTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHGM 63 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 YI Y +A F H PRRNRKLLL ++I + ++G T+VP+ +YF G AK+ + Sbjct: 64 YIKPYEEAGPFGHEPRRNRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRD-GWAKLKIG 122 Query: 129 LAQGKKNYDKRETEK 143 +A+G++ +DKR+ K Sbjct: 123 IAKGRQKHDKRQAIK 137 >gi|261404140|ref|YP_003240381.1| SsrA-binding protein [Paenibacillus sp. Y412MC10] gi|261280603|gb|ACX62574.1| SsrA-binding protein [Paenibacillus sp. Y412MC10] Length = 189 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M KS G KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R + NI D++AT N Sbjct: 31 MGKKSDG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRANIGDAFATIRN 86 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EI + N +I + Q NR N P R RKLLL K +I +L ++DG +VP+KIY Sbjct: 87 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLLGLSKQDGYAIVPLKIYIR- 145 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GK+ YDKR K+D R R LRE Sbjct: 146 NGYAKLLLGLGKGKRQYDKRADAAKKDAQRDIQRALREK 184 >gi|223040457|ref|ZP_03610731.1| SsrA-binding protein [Campylobacter rectus RM3267] gi|222878307|gb|EEF13414.1| SsrA-binding protein [Campylobacter rectus RM3267] Length = 151 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K ++ N+KA +++ I+ +FEAGIVL G+EVK+LR + N+ DS+A E++L N++I Sbjct: 3 KDLAKNKKALFDFSIIETFEAGIVLKGSEVKALRAGRANLKDSFARVIKGELFLLNAHIS 62 Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F R RKLL+ +++I +++ V +DG+TLV + +Y N K + K LALA Sbjct: 63 HLNTTHSAFRPDERAPRKLLMHRKQIDKIFGQVTQDGLTLVVLALYLNDKNIVKARLALA 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET K+++ D++ ++++ Sbjct: 123 KGKNLHDKRETIKRKEADKEARAAMKKY 150 >gi|157738285|ref|YP_001490969.1| tmRNA-binding protein SmpB [Arcobacter butzleri RM4018] gi|187611469|sp|A8EWH6|SSRP_ARCB4 RecName: Full=SsrA-binding protein gi|157700139|gb|ABV68299.1| tmRNA-binding protein SmpB [Arcobacter butzleri RM4018] Length = 158 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ + K +V N+KA +++ I+ + EAGIVL G+EVK++R +VN+ DS+ E Sbjct: 1 MANKKDTKKNLVFKNKKAFHDFTILETLEAGIVLEGSEVKAIREGRVNLKDSFVRIIKGE 60 Query: 63 IWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L N++I + + RR+RKLLL ++I ++Y+ V +DG+TLV +K+YFN K Sbjct: 61 VFLLNAHISHLSTTHSTYRPDERRSRKLLLHSKQIDKMYSKVTKDGITLVALKLYFNDKN 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + KI++A AQGKK +DKRE K + R+ ++L+ Sbjct: 121 MIKIEVATAQGKKLHDKREDLKAKTMKRETEQVLKSF 157 >gi|159904282|ref|YP_001551626.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9211] gi|238687127|sp|A9BD59|SSRP_PROM4 RecName: Full=SsrA-binding protein gi|159889458|gb|ABX09672.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9211] Length = 166 Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++NR AR+ Y I+ + E GI L GTEVKS+R N+ D + E+ L N +I Sbjct: 21 LAENRLARHQYEILETLETGIELVGTEVKSIRAGNTNLRDGFCLIREGELQLHNVHISPL 80 Query: 74 LQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 A N FNH P R RKLL ++EI++L V R G+TL+P+ I+ KI + + +G Sbjct: 81 NNAGNFFNHDPLRTRKLLAHRKEINKLEIQVARKGLTLIPLSIHLKGS-WIKIIIGVGKG 139 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 +K +DKRE +K++ +R L + Sbjct: 140 RKLHDKREDDKRKQANRDMKSALARY 165 >gi|118137454|pdb|2CZJ|A Chain A, Crystal Structure Of The Trna Domain Of Tmrna From Thermus Thermophilus Hb8 gi|118137455|pdb|2CZJ|C Chain C, Crystal Structure Of The Trna Domain Of Tmrna From Thermus Thermophilus Hb8 gi|118137456|pdb|2CZJ|E Chain E, Crystal Structure Of The Trna Domain Of Tmrna From Thermus Thermophilus Hb8 gi|118137457|pdb|2CZJ|G Chain G, Crystal Structure Of The Trna Domain Of Tmrna From Thermus Thermophilus Hb8 Length = 123 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 64/120 (53%), Positives = 86/120 (71%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 V +NR+AR++Y I+ ++EAGI L GTEVKSLR KV+ + S+A FE+ E++L N YI Y Sbjct: 4 VLENRRARHDYEILETYEAGIALKGTEVKSLRAGKVDFTGSFARFEDGELYLENLYIAPY 63 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + + N PRR RKLLL K E+ RL V + G+TLVP+KIYFN +G AK+ L LA+GK Sbjct: 64 EKGSYANVDPRRKRKLLLHKHELRRLLGKVEQKGLTLVPLKIYFNERGYAKVLLGLARGK 123 >gi|189501619|ref|YP_001957336.1| SsrA-binding protein [Candidatus Amoebophilus asiaticus 5a2] gi|189497060|gb|ACE05607.1| SsrA-binding protein [Candidatus Amoebophilus asiaticus 5a2] Length = 156 Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 58/151 (38%), Positives = 100/151 (66%), Gaps = 1/151 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + N +V N++A + Y + F AGIVLTGTE+KS+R +KV++ ++Y F++ E Sbjct: 1 MNVKKNKTTGLVIRNKQASFEYTFIDKFIAGIVLTGTEIKSIRKAKVSLQEAYCYFKSGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +W+ + +I +Y Q N +NH R RKLLL+++E+++L + G+T++P++++ + Sbjct: 61 LWIKSMHIAQYEQGNIYNHVENRERKLLLTRKELNKLIKN-QEKGLTIIPIQLFIDENNR 119 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 AK+ +ALA+GKK YDKR+ K+RD R R Sbjct: 120 AKLQIALAKGKKLYDKRQHIKERDVQRDMER 150 >gi|45658263|ref|YP_002349.1| SsrA-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|56749629|sp|Q72PQ0|SSRP_LEPIC RecName: Full=SsrA-binding protein gi|45601505|gb|AAS70986.1| SsrA-binding protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 160 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + +V N+KA++N+ ++ EAGIVL+G+EVKSLR K N++D++A +N Sbjct: 1 MVKKKEESGHSPLV--NKKAKFNFELISFLEAGIVLSGSEVKSLRDKKGNLTDAFAKIKN 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N I Y NH R RKLLL K+EI +L V+ G+ LV K+YF Sbjct: 59 GEVFLENFSIAPYKNGGYANHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNN 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++A+ + KK +DKR+ +K+D ++ R L+ N Sbjct: 119 LRVKVEIAVGKPKKLHDKRDDLQKKDAQQEIARALKSSN 157 >gi|298208385|ref|YP_003716564.1| SsrA-binding protein [Croceibacter atlanticus HTCC2559] gi|83848306|gb|EAP86176.1| SsrA-binding protein [Croceibacter atlanticus HTCC2559] Length = 152 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN-DEIWLTNSYI 70 + NRKA+++Y I+ ++ AGI L GTE+K++R K +I++S+ F + +E+++ N I Sbjct: 4 NINIKNRKAKFDYEILDTYTAGIKLVGTEIKAIRDGKASIAESFCEFNDAEELFVINMTI 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY A FNH P+ RKLLL++ E+ +L+ VR G+T++P+K++ N +G AK+++ LA Sbjct: 64 QEYSHATHFNHNPKSERKLLLNRSELKKLHKEVRNSGLTIIPLKVFINDRGFAKMNIGLA 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK YDKR+ K R+ ++ RI + + Sbjct: 124 KGKKLYDKRDAIKDRENKKRLDRIQKAY 151 >gi|256820960|ref|YP_003142239.1| SsrA-binding protein [Capnocytophaga ochracea DSM 7271] gi|256582543|gb|ACU93678.1| SsrA-binding protein [Capnocytophaga ochracea DSM 7271] Length = 151 Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats. Identities = 64/144 (44%), Positives = 99/144 (68%), Gaps = 1/144 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIPEY 73 N++A++ Y I+ + AGIVL GTE+KS+R+ K +I++S+ F + E+++ NS I Y Sbjct: 8 ILNKRAKFEYEILDKYTAGIVLVGTEIKSIRMGKASIAESFCEFNDKGELFVINSTIEAY 67 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 +NH P+ RKLLL K+E+ +L V+ G+T+VP+K++ N KGLAK+D+AL +GK Sbjct: 68 DFGTYYNHRPKSERKLLLQKKELRKLNKEVKNSGLTIVPLKLFINEKGLAKMDIALVRGK 127 Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157 K YDKRET K RD R R++++ Sbjct: 128 KLYDKRETIKDRDNKRNLDRLMKK 151 >gi|88808207|ref|ZP_01123718.1| SsrA-binding protein [Synechococcus sp. WH 7805] gi|148238520|ref|YP_001223907.1| SsrA-binding protein [Synechococcus sp. WH 7803] gi|187629775|sp|A5GI45|SSRP_SYNPW RecName: Full=SsrA-binding protein gi|88788246|gb|EAR19402.1| SsrA-binding protein [Synechococcus sp. WH 7805] gi|147847059|emb|CAK22610.1| SsrA-binding protein [Synechococcus sp. WH 7803] Length = 165 Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 2/144 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + N E+ L N +I + Sbjct: 23 DNRLARHQYDILETLETGIELVGTEVKSIRAGQANLRDGFCLIRNGELQLHNVHISPHTH 82 Query: 76 AN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 A+ FNH P R R+LL +REI +L + + G+TL+P+ ++ K+ L L +G+K Sbjct: 83 ASGYFNHDPLRVRRLLAHRREIDKLRGQLDQKGLTLIPLNLHLQGS-WIKLTLGLGKGRK 141 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR EK + ++ L + Sbjct: 142 LHDKRAAEKDKQIKKETRAALSRY 165 >gi|24214002|ref|NP_711483.1| SsrA-binding protein [Leptospira interrogans serovar Lai str. 56601] gi|30173251|sp|Q8CXT8|SSRP_LEPIN RecName: Full=SsrA-binding protein gi|24194867|gb|AAN48501.1| SsrA-binding protein [Leptospira interrogans serovar Lai str. 56601] Length = 160 Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats. Identities = 61/159 (38%), Positives = 95/159 (59%), Gaps = 2/159 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M K + +V N+KA++N+ ++ EAGIVL+G+EVKSLR K N++D++A +N Sbjct: 1 MVKKKEESGHSPLV--NKKAKFNFELISFIEAGIVLSGSEVKSLRDKKGNLTDAFAKIKN 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E++L N I Y NH R RKLLL K+EI +L V+ G+ LV K+YF Sbjct: 59 GEVFLENFSIAPYKNGGYANHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNN 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++A+ + KK +DKR+ +K+D ++ R L+ N Sbjct: 119 LRVKVEIAVGKPKKLHDKRDDLQKKDAQQEIARALKSSN 157 >gi|315636576|ref|ZP_07891810.1| SsrA-binding protein [Arcobacter butzleri JV22] gi|315479085|gb|EFU69784.1| SsrA-binding protein [Arcobacter butzleri JV22] Length = 158 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 1/157 (0%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + + + K +V N+KA +++ I+ + EAGIVL G+EVK++R +VN+ DS+ E Sbjct: 1 MANNKDTKKNLVFKNKKAFHDFTILETLEAGIVLEGSEVKAIREGRVNLKDSFVRIIKGE 60 Query: 63 IWLTNSYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L N++I + + RR+RKLLL ++I ++Y+ V +DG+TLV +K+YFN K Sbjct: 61 VFLLNAHISHLSTTHSTYRPDERRSRKLLLHSKQIDKMYSKVTKDGITLVALKLYFNDKN 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + KI++A AQGKK +DKRE K + R+ ++L+ Sbjct: 121 MIKIEVATAQGKKLHDKREDLKAKTMKRETEQVLKSF 157 >gi|255321471|ref|ZP_05362629.1| SsrA-binding protein [Campylobacter showae RM3277] gi|255301327|gb|EET80586.1| SsrA-binding protein [Campylobacter showae RM3277] Length = 151 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 97/148 (65%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K ++ N+KA +++ I+ +FEAGIVL G+EVK+LR + N+ DS+A E++L N++I Sbjct: 3 KDLAKNKKALFDFSIIETFEAGIVLKGSEVKALRAGRANLKDSFARVIKGELFLLNAHIS 62 Query: 72 EYLQANR-FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F R RKLL+ +++I +++ V ++G+TLV + +Y N K + K +ALA Sbjct: 63 HLNTTHSAFRPDERAPRKLLMHRKQIDKIFGQVTQEGLTLVVLALYLNDKNIVKARVALA 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET K+++ D++ ++++ Sbjct: 123 KGKNLHDKRETIKRKEADKEARAAMKKY 150 >gi|46447341|ref|YP_008706.1| SsrA-binding protein [Candidatus Protochlamydia amoebophila UWE25] gi|61216529|sp|Q6MAG8|SSRP_PARUW RecName: Full=SsrA-binding protein gi|46400982|emb|CAF24431.1| conserved hypothetical protein [Candidatus Protochlamydia amoebophila UWE25] Length = 153 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 89/147 (60%), Gaps = 5/147 (3%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + + + NR+A ++Y I+ +FE GIVL GTE+KS+R + D+Y ++E Sbjct: 1 MKDKHSD----LVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNE 56 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +WL I Y N NH +R+RKLL+ KREI + A++ G+ L+P+ +Y G Sbjct: 57 LWLIGCNIAHYRFGNIHNHEEKRDRKLLMHKREIKKCKGAIQEKGLALIPLALYLKQ-GR 115 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDR 149 K+ +A+A+GKK++DKR K+RD R Sbjct: 116 IKVRIAIAKGKKSFDKRADLKERDDKR 142 >gi|157414223|ref|YP_001485089.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9215] gi|187629769|sp|A8G7C2|SSRP_PROM2 RecName: Full=SsrA-binding protein gi|157388798|gb|ABV51503.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9215] Length = 164 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 64/165 (38%), Positives = 100/165 (60%), Gaps = 9/165 (5%) Query: 1 MSL---KSRGNPPK----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53 M+ K + N K K+++DNR A++ Y I + EAGI L GTEVKS+R K N+ D Sbjct: 1 MAKTSNKVKRNANKANIFKLLADNRYAKFQYEISETIEAGIELLGTEVKSIRNGKANLRD 60 Query: 54 SYATFENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVP 112 Y +F ++EI L N +I + + FNH P RNRKLLL K+EI ++ ++ + GMT+VP Sbjct: 61 GYCSFRDNEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSSTEKKGMTIVP 120 Query: 113 MKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + +Y K+ + + +GKK +DKR+ EK++ R+ + L+ Sbjct: 121 LNLYLKGS-WIKLTIGVGKGKKLHDKRQDEKQKSIKREINSALKR 164 >gi|261414760|ref|YP_003248443.1| SsrA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371216|gb|ACX73961.1| SsrA-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 156 Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats. Identities = 61/160 (38%), Positives = 93/160 (58%), Gaps = 7/160 (4%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE- 59 M K P V NRKA + Y + +FE GI+L G+EVKS+R K + +++ + Sbjct: 1 MIKKESSTP----VIQNRKANHLYFVDETFEVGIMLIGSEVKSIRNGKCTLGEAWIDIDE 56 Query: 60 -NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 DE+WL ++I EYL ANRFNH+P R RKLL EI ++ A G T++P+K+YF Sbjct: 57 NKDELWLVGAHIDEYLFANRFNHFPARRRKLLAHTHEIQKMRKAKELKGCTIIPLKMYFK 116 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +AK+++ + +GK +DKR+ RD + R + H Sbjct: 117 NR-IAKLEVGICRGKDQHDKRQDILVRDAKMEMARAAKAH 155 >gi|255536191|ref|YP_003096562.1| tmRNA-binding protein SmpB [Flavobacteriaceae bacterium 3519-10] gi|255342387|gb|ACU08500.1| tmRNA-binding protein SmpB [Flavobacteriaceae bacterium 3519-10] Length = 155 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 66/152 (43%), Positives = 99/152 (65%) Query: 6 RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWL 65 + K V NR+AR+ Y ++ EAG+VLTGTE+KSLR SK +I+D++ F + E+++ Sbjct: 3 KMKIEKSVTILNRRARFEYELLEEIEAGMVLTGTEIKSLRSSKASITDAFCQFIDGELYI 62 Query: 66 TNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N I EY +NH +R RKLLL K E+ + ++ G T++P+K+Y NAKG AKI Sbjct: 63 INMMIDEYKLGTFYNHKTKRERKLLLHKTELKKFEKKLKDVGNTIIPLKMYINAKGKAKI 122 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +A+ +GKK +DKRE+ K R+ R RIL++ Sbjct: 123 LIAVGRGKKLFDKRESIKDRENKRNIDRILKK 154 >gi|223940833|ref|ZP_03632664.1| SsrA-binding protein [bacterium Ellin514] gi|223890510|gb|EEF57040.1| SsrA-binding protein [bacterium Ellin514] Length = 151 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 67/145 (46%), Positives = 89/145 (61%), Gaps = 1/145 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N KAR +YHI+ +FEAGI L GTEVKSLR I+D++A END+++L N +I EY Sbjct: 4 ILSNHKARRDYHILETFEAGIALKGTEVKSLRAGLGQIADAFARVENDQVFLYNVHIDEY 63 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 NR NH P+ RKLLL K EI +L+ G L P+ Y+ G K+ LA+ +GK Sbjct: 64 RFGNRQNHEPKSARKLLLHKSEIRKLFGLASVKGNALFPLSFYWK-NGKVKVALAVGKGK 122 Query: 134 KNYDKRETEKKRDWDRQKHRILREH 158 +DKR+ KKRD DR+ R H Sbjct: 123 VEFDKRDDIKKRDADRELKRATMHH 147 >gi|315224161|ref|ZP_07866001.1| SsrA-binding protein [Capnocytophaga ochracea F0287] gi|314945894|gb|EFS97903.1| SsrA-binding protein [Capnocytophaga ochracea F0287] Length = 151 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 63/144 (43%), Positives = 99/144 (68%), Gaps = 1/144 (0%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYIPEY 73 N++A++ Y I+ + AGI+L GTE+KS+R+ K +I++S+ F + E+++ NS I Y Sbjct: 8 ILNKRAKFEYEILDKYTAGIMLVGTEIKSIRLGKASIAESFCEFNDKGELFVINSTIEAY 67 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 +NH P+ RKLLL K+E+ +L V+ G+T+VP+K++ N KGLAK+D+AL +GK Sbjct: 68 DFGTYYNHRPKSERKLLLQKKELRKLNKEVKNSGLTIVPLKLFINEKGLAKMDIALVRGK 127 Query: 134 KNYDKRETEKKRDWDRQKHRILRE 157 K YDKRET K RD R R++++ Sbjct: 128 KLYDKRETIKDRDNKRNLDRLMKK 151 >gi|261367393|ref|ZP_05980276.1| SsrA-binding protein [Subdoligranulum variabile DSM 15176] gi|282570159|gb|EFB75694.1| SsrA-binding protein [Subdoligranulum variabile DSM 15176] Length = 155 Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 90/152 (59%), Gaps = 1/152 (0%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + KKV++ NR+AR+ Y ++ + E GI L GTEVKSLR VN+ DS+A ++ E+ Sbjct: 2 AEDKSGKKVIAQNREARHEYFVIEALETGIELVGTEVKSLRAGGVNLKDSWADIDDGELI 61 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 + +I Y Q N FN PRR R+LL K EI RL ++ G TL+P+ +YF G K Sbjct: 62 VKGMHISPYEQGNIFNKDPRRPRRLLAHKAEIRRLGQQIKLQGYTLIPLSLYFK-HGRVK 120 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 ++L L +GKK YDKR RD R R L+ Sbjct: 121 LELGLCKGKKLYDKRAAAAARDAKRDIDRALK 152 >gi|315638596|ref|ZP_07893770.1| SsrA-binding protein [Campylobacter upsaliensis JV21] gi|315481220|gb|EFU71850.1| SsrA-binding protein [Campylobacter upsaliensis JV21] Length = 150 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++YHI+ FEAGIVL G+EV +LR + N+ DS+ E++L N++I Sbjct: 2 KIIARNKKALFDYHIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIRGELFLLNAHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G TLV + +YFNAK AK+ LALA Sbjct: 62 LLSTTHSFYRHEERGVRKLLMHRKQIDKLLGKVSVEGYTLVALDLYFNAKNKAKLTLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRE KK+ D L+ + Sbjct: 122 KGKTLHDKREVLKKKQADLDAKMALKNY 149 >gi|228472801|ref|ZP_04057559.1| SsrA-binding protein [Capnocytophaga gingivalis ATCC 33624] gi|228275852|gb|EEK14618.1| SsrA-binding protein [Capnocytophaga gingivalis ATCC 33624] Length = 152 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 63/148 (42%), Positives = 101/148 (68%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYI 70 V N++AR+ Y ++ + AGIVL GTE+KS+R+ K +I++S+ F E E+++ N I Sbjct: 4 NVNIQNKRARFEYELLDKYIAGIVLRGTEIKSIRLGKASIAESFCEFNEKGELFVINMTI 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 EY +NH P+ RKLLL K+E+ +L+ V+ G+T+VP++++ + KG AK+++AL Sbjct: 64 EEYAWGTYYNHKPKSERKLLLKKQELKKLHKEVKNSGLTIVPLRVFLSEKGFAKMEIALV 123 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKRET K+RD RQ RI + + Sbjct: 124 RGKKLHDKRETIKERDNKRQLDRIKKAY 151 >gi|222824059|ref|YP_002575633.1| SsrA-binding protein [Campylobacter lari RM2100] gi|222539281|gb|ACM64382.1| SsrA-binding protein [Campylobacter lari RM2100] Length = 152 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 94/149 (63%), Gaps = 1/149 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK + N+KA ++Y I+ FEAGIVL G+EV +LR S+ N+ DS+ EI+L N++I Sbjct: 3 KKTIVKNKKAFFDYEILEKFEAGIVLKGSEVVALRASRANLKDSFVRIIKGEIFLLNAHI 62 Query: 71 PEYLQANRF-NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 + F H + RKLL+ K++I +L+ + G T+VP+++YFN K AK+ +AL Sbjct: 63 SHLSTTHAFYKHEEKGARKLLMHKKQIDKLFGKISTQGFTIVPLELYFNEKNKAKVLIAL 122 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILREH 158 A+GK +DKRE+ KK+ D + ++ H Sbjct: 123 AKGKNLHDKRESLKKKQADLEARAAMKNH 151 >gi|124026773|ref|YP_001015888.1| SsrA-binding protein [Prochlorococcus marinus str. NATL1A] gi|166223237|sp|A2C564|SSRP_PROM1 RecName: Full=SsrA-binding protein gi|123961841|gb|ABM76624.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. NATL1A] Length = 165 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 2/151 (1%) Query: 9 PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 + +++NR+ARY Y I+ + E G+ L GTEVKS+R KVN+ D + + D+I L N Sbjct: 16 DGNRRLAENRQARYEYEILETLETGLELLGTEVKSIRAGKVNLKDGFCLIKKDQIQLHNV 75 Query: 69 YIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I + A FNH P R ++LL ++EI +L ++ R G+T++P+ +Y K+ + Sbjct: 76 HISPHNHAGKFFNHEPLRIKRLLAHRKEIEKLKISLERKGLTIIPLSLYLKGS-WIKLKI 134 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +G+K +DKR+ EK D R L+ Sbjct: 135 GVGKGRKTHDKRDREKINDSKRDVANALKRF 165 >gi|116328638|ref|YP_798358.1| SsrA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330705|ref|YP_800423.1| SsrA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281541|sp|Q04TV5|SSRP_LEPBJ RecName: Full=SsrA-binding protein gi|122283576|sp|Q04ZS0|SSRP_LEPBL RecName: Full=SsrA-binding protein gi|116121382|gb|ABJ79425.1| ssrA/tmRNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124394|gb|ABJ75665.1| ssrA/tmRNA-binding protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 160 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 94/157 (59%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + ++ P N+KA++N+ +V EAGIVL+G+EVKSLR K N++D++A +N E Sbjct: 1 MANKKEEPGHSPLVNKKAKFNFELVSFIEAGIVLSGSEVKSLREKKGNLTDAFAKIKNGE 60 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N I Y NH R RKLLL K+EI +L V+ G+ LV K+YF Sbjct: 61 VFLENFSITPYKNGGYVNHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNNLR 120 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 K+++A+ + KK +DKR+ +K+D ++ R L+ N Sbjct: 121 VKVEIAVGKPKKIHDKRDDMQKKDAQQEIARALKSSN 157 >gi|34810651|pdb|1P6V|A Chain A, Crystal Structure Of The Trna Domain Of Transfer-Messenger Rna In Complex With Smpb gi|34810652|pdb|1P6V|C Chain C, Crystal Structure Of The Trna Domain Of Transfer-Messenger Rna In Complex With Smpb gi|126031477|pdb|2OB7|B Chain B, Structure Of Tmrna-(Smpb)2 Complex As Inferred From Cryo-Em gi|126031478|pdb|2OB7|C Chain C, Structure Of Tmrna-(Smpb)2 Complex As Inferred From Cryo-Em Length = 156 Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72 +++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI Sbjct: 9 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 68 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G Sbjct: 69 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 127 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK YD+R K++ R+ R + Sbjct: 128 KKLYDRRRELKEKAMKRELEREFK 151 >gi|15605823|ref|NP_213200.1| SsrA-binding protein [Aquifex aeolicus VF5] gi|6226145|sp|O66640|SSRP_AQUAE RecName: Full=SsrA-binding protein gi|2982984|gb|AAC06597.1| small protein B [Aquifex aeolicus VF5] Length = 157 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 91/144 (63%), Gaps = 2/144 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72 +++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI Sbjct: 10 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 69 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G Sbjct: 70 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 128 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK YD+R K++ R+ R + Sbjct: 129 KKLYDRRRELKEKAMKRELEREFK 152 >gi|171911031|ref|ZP_02926501.1| ssra-binding protein [Verrucomicrobium spinosum DSM 4136] Length = 159 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ NRKA +YHI+ +EAG+ L GTE+KSLR + +SD++A E E++L I Y Sbjct: 4 ITINRKAPRDYHILERYEAGVQLKGTEIKSLRQGHITLSDAFARVERGEVFLYGCDIKPY 63 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 +A+ H +R+R+LLL K EI +LY A ++ G+T+V ++ Y+ K KI++A+ +GK Sbjct: 64 DKASHEQHEAKRSRRLLLHKNEIFKLYGASQQKGLTIVALRAYWKNK-KVKIEIAVGRGK 122 Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159 D+R K++ +R+ R + N Sbjct: 123 DQRDQRHDLKEKVENREAQREMARFN 148 >gi|72383031|ref|YP_292386.1| SsrA-binding protein [Prochlorococcus marinus str. NATL2A] gi|123620704|sp|Q46IJ5|SSRP_PROMT RecName: Full=SsrA-binding protein gi|72002881|gb|AAZ58683.1| SsrA-binding protein [Prochlorococcus marinus str. NATL2A] Length = 165 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 56/166 (33%), Positives = 92/166 (55%), Gaps = 9/166 (5%) Query: 1 MSLKSRGNP-------PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISD 53 MS K + + +++NR+ARY Y I+ + E G+ L GTEVKS+R KVN+ D Sbjct: 1 MSKKGKKQSKNNSSVDGNRRLAENRQARYEYEILETLETGLELLGTEVKSIRAGKVNLKD 60 Query: 54 SYATFENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVP 112 + + D+I L N +I + A FNH P R ++LL ++EI +L ++ R G+T++P Sbjct: 61 GFCLIKKDQIQLHNVHISPHNHAGKFFNHEPLRIKRLLAHRKEIEKLKISLERKGLTIIP 120 Query: 113 MKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + +Y K+ + + +G+K +DKR+ EK D R L+ Sbjct: 121 LSLYLKGS-WIKLKIGVGKGRKIHDKRDREKINDSKRDVANALKRF 165 >gi|315453623|ref|YP_004073893.1| SmpB-SsrA-binding protein [Helicobacter felis ATCC 49179] gi|315132675|emb|CBY83303.1| SmpB-SsrA-binding protein [Helicobacter felis ATCC 49179] Length = 153 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 53/147 (36%), Positives = 91/147 (61%), Gaps = 1/147 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 ++ N+KA ++Y I+ + EAGIVL G+EVK++R +VN+ D++ E +L +I Sbjct: 4 IARNKKAFFDYEILETLEAGIVLVGSEVKAIRAGRVNLKDNFVKIVRGEAFLFGMHISHL 63 Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 AN + R RKLLL K+++ + +A V + +++V +K+YFN + AK+ +AL +G Sbjct: 64 KTANVHYKPEETRVRKLLLHKKQLAKWFAQVGQQRLSIVALKLYFNQRNRAKLQIALVKG 123 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 KK +DKRE+ KK+ + L+ H+ Sbjct: 124 KKLHDKRESMKKKALEIDAKMALKNHS 150 >gi|154174845|ref|YP_001408538.1| SsrA-binding protein [Campylobacter curvus 525.92] gi|166222373|sp|A7GZ96|SSRP_CAMC5 RecName: Full=SsrA-binding protein gi|112803086|gb|EAU00430.1| SsrA-binding protein [Campylobacter curvus 525.92] Length = 150 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 95/148 (64%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K ++ N+KA +++ I+ +FEAG+VL G+EVK+LR + N+ DS+ EI+L N++I Sbjct: 2 KDLAKNKKALHDFSILETFEAGVVLKGSEVKALRAGRANLKDSFVRIIKGEIFLLNAHIS 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 N F R RKLL+ +++I +L+ +V +DG+T+V + +Y N K + K +ALA Sbjct: 62 HLDTTNSHFRPDERAPRKLLMHRKQIDKLFGSVTKDGLTMVALALYLNDKNIIKARVALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KKR+ D + +++ Sbjct: 122 KGKNLHDKRETLKKREADMEARAAMKKF 149 >gi|317968454|ref|ZP_07969844.1| SsrA-binding protein [Synechococcus sp. CB0205] Length = 165 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 K+ + K+++DNR AR+ Y I+ + E G+ L GTEVKS+R +VN+ D + + Sbjct: 10 AKALRDAANKLLADNRFARHQYEILETLECGVELMGTEVKSIRAGQVNLRDGFCLIRKGQ 69 Query: 63 IWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 + L N +I + A FNH P R R+LL ++EI +L AV + G+TL+P+ I+ Sbjct: 70 LQLHNVHISPHTHAGAYFNHEPLRTRRLLAHRKEIDKLRIAVDQKGLTLIPLNIHLKGS- 128 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 K + L +G+K +DKR+ E+++ + + + + Sbjct: 129 WIKATIGLGKGRKLHDKRQEERRKQDIKDAKKAIARY 165 >gi|123969358|ref|YP_001010216.1| SsrA-binding protein [Prochlorococcus marinus str. AS9601] gi|187629772|sp|A2BTJ8|SSRP_PROMS RecName: Full=SsrA-binding protein gi|123199468|gb|ABM71109.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. AS9601] Length = 164 Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats. Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%) Query: 2 SLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND 61 + K+++DNR A++ Y I + EAGI L GTEVKS+R K N+ D Y +F + Sbjct: 9 KKNTNKANNFKLLADNRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDG 68 Query: 62 EIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 EI L N +I + + FNH P RNRKLLL K+EI ++ + + GMT+VP+ +Y Sbjct: 69 EILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSNTEKKGMTIVPLSLYLKGS 128 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + + +GKK +DKR+ EK++ ++ + L+ Sbjct: 129 -WIKLTIGVGKGKKLHDKRQDEKQKSIKKEINSALKR 164 >gi|126697146|ref|YP_001092032.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9301] gi|187629768|sp|A3PFA6|SSRP_PROM0 RecName: Full=SsrA-binding protein gi|126544189|gb|ABO18431.1| tmRNA binding protein SmpB [Prochlorococcus marinus str. MIT 9301] Length = 164 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%) Query: 2 SLKSRGNPPK----KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT 57 S K + N K K++++NR A++ Y I + EAGI L GTEVKS+R K N+ D Y + Sbjct: 5 SKKVKSNTNKANNFKLLAENRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCS 64 Query: 58 FENDEIWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 F + EI L N +I + + FNH P RNRKLLL K+EI ++ + + GMT+VP+ +Y Sbjct: 65 FRDGEILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKMKSNTEKKGMTIVPLSLY 124 Query: 117 FNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 KI L + +GKK +DKR+ EK++ ++ + L+ Sbjct: 125 LKGS-WIKITLGVGKGKKLHDKRQDEKQKSIKKEINSALKR 164 >gi|283954670|ref|ZP_06372188.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni 414] gi|283793862|gb|EFC32613.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni 414] Length = 150 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAG+VL G+EV +LR + N+ DS+ +EI+L N++I Sbjct: 2 KIIARNKKALFDYSIIERFEAGLVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNAHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSVEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149 >gi|57242262|ref|ZP_00370201.1| SsrA-binding protein [Campylobacter upsaliensis RM3195] gi|57016942|gb|EAL53724.1| SsrA-binding protein [Campylobacter upsaliensis RM3195] Length = 150 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++YHI+ FEAGIVL G+EV +LR + N+ DS+ E++L N++I Sbjct: 2 KIIARNKKALFDYHIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIRRELFLLNAHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G TL+ + +YFNAK AK+ LALA Sbjct: 62 LLSTTHSFYRHEERGARKLLMHRKQIDKLLGKVSVEGYTLIALDLYFNAKNKAKLTLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRE KK+ D ++ + Sbjct: 122 KGKTLHDKREVLKKKQADLDAKMAMKNY 149 >gi|153952300|ref|YP_001397782.1| SsrA-binding protein [Campylobacter jejuni subsp. doylei 269.97] gi|166222375|sp|A7H2Q2|SSRP_CAMJD RecName: Full=SsrA-binding protein gi|152939746|gb|ABS44487.1| SsrA-binding protein [Campylobacter jejuni subsp. doylei 269.97] Length = 150 Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ EI+L NS+I Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKSEIFLLNSHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149 >gi|116071675|ref|ZP_01468943.1| SsrA-binding protein [Synechococcus sp. BL107] gi|116065298|gb|EAU71056.1| SsrA-binding protein [Synechococcus sp. BL107] Length = 166 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I Sbjct: 20 RLMADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + A+ FNH P R RKLL +REI +L + + G+ L+P+ I+ K+ + + Sbjct: 80 PHSHASAYFNHDPLRTRKLLAHRREIDKLRGQLEKKGLALIPLNIHLKGS-WIKLTVGVG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR +K++ + L+ Sbjct: 139 KGRKLHDKRAADKEKQTKKDVRSALKNF 166 >gi|15806482|ref|NP_295191.1| SsrA-binding protein [Deinococcus radiodurans R1] gi|6459225|gb|AAF11033.1|AE001991_2 small protein B [Deinococcus radiodurans R1] Length = 160 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 5/142 (3%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 NR+A + Y ++ FEAGI LTG+EVKS+R V+ D++A ++ L YIP Y + Sbjct: 23 TNRRAHHEYELLERFEAGISLTGSEVKSVRAGGVDFRDAFARINGSDVDLEGLYIPVYKE 82 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 A NH PRR R+LLL + EI +L + + G+TLVP ++Y + K++LALA+GKK Sbjct: 83 ATYNNHEPRRKRRLLLHREEIEKLRRGLEQKGLTLVPTRLYQKGR-YFKVELALARGKKL 141 Query: 136 YDKRETEKKRDWDRQKHRILRE 157 +DKR D +R R LRE Sbjct: 142 HDKRRA----DAERTVARELRE 159 >gi|299116169|emb|CBN76075.1| SsrA-binding protein [Ectocarpus siliculosus] Length = 146 Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats. Identities = 64/141 (45%), Positives = 88/141 (62%), Gaps = 1/141 (0%) Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQAN 77 RKAR NY I+ F AGI L G+EVKS R+SK+N+ + +A + + +L +I E +N Sbjct: 4 RKARRNYEILEKFVAGIELVGSEVKSCRMSKINMDEGFAQAKKGQCFLHGIHIAECGVSN 63 Query: 78 RFNHY-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 RF + PRR R+LLL KREI +L V + GMT+VP+KI+F+ K+++ LA GK Sbjct: 64 RFYQHEPRRPRRLLLHKREIKKLEDKVAQKGMTVVPLKIFFDDNNRLKVEIGLALGKNVR 123 Query: 137 DKRETEKKRDWDRQKHRILRE 157 DKRE K RD R RI + Sbjct: 124 DKREDIKARDAKRDIQRISKN 144 >gi|86150393|ref|ZP_01068619.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152573|ref|ZP_01070778.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|121612288|ref|YP_001000783.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|157415366|ref|YP_001482622.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|167005698|ref|ZP_02271456.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni 81-176] gi|218562719|ref|YP_002344498.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|283956502|ref|ZP_06373982.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|22096182|sp|Q9PNI9|SSRP_CAMJE RecName: Full=SsrA-binding protein gi|166222376|sp|A1W092|SSRP_CAMJJ RecName: Full=SsrA-binding protein gi|172047148|sp|A8FMF8|SSRP_CAMJ8 RecName: Full=SsrA-binding protein gi|85839218|gb|EAQ56481.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843458|gb|EAQ60668.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni HB93-13] gi|87249260|gb|EAQ72221.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|112360425|emb|CAL35222.1| small protein B homolog [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|157386330|gb|ABV52645.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni 81116] gi|283792222|gb|EFC31011.1| small protein B-like protein [Campylobacter jejuni subsp. jejuni 1336] gi|307748007|gb|ADN91277.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni M1] gi|315926525|gb|EFV05906.1| ssrA-binding protein [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315932243|gb|EFV11186.1| ssrA-binding protein [Campylobacter jejuni subsp. jejuni 327] Length = 150 Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149 >gi|78183745|ref|YP_376179.1| SsrA-binding protein [Synechococcus sp. CC9902] gi|123582280|sp|Q3B0J2|SSRP_SYNS9 RecName: Full=SsrA-binding protein gi|78168039|gb|ABB25136.1| SsrA-binding protein [Synechococcus sp. CC9902] Length = 167 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 2/148 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++++DNR+AR+ Y I+ + E GI L GTEVKS+R K N+ D + N E+ L N +I Sbjct: 20 RLMADNRQARHQYEILETLETGIELVGTEVKSIRNGKANLRDGFCLIRNGELQLHNVHIS 79 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + A+ FNH P R RKLL +REI +L + + G+ L+P+ I+ KI + + Sbjct: 80 PHSHASAYFNHDPLRTRKLLAHRREIDKLRGQLDKKGLALIPLNIHLKGS-WIKITIGVG 138 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +G+K +DKR +K++ ++ + ++ Sbjct: 139 KGRKLHDKRAADKEKQSKKEVRSAMAKY 166 >gi|254526953|ref|ZP_05139005.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9202] gi|221538377|gb|EEE40830.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9202] Length = 164 Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats. Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 2/155 (1%) Query: 4 KSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 + K+++DNR A++ Y I + EAGI L GTEVKS+R K N+ D Y +F ++EI Sbjct: 11 NANKANNFKLLADNRYAKFQYEISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDNEI 70 Query: 64 WLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 L N +I + + FNH P RNRKLLL K+EI ++ + + GMT+VP+ IY Sbjct: 71 LLLNVHISPHTNVGSFFNHDPLRNRKLLLHKKEIIKMKSNTEKKGMTIVPLNIYLKGS-W 129 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + + +GKK +DKR+ EK++ ++ + L+ Sbjct: 130 IKLTIGVGKGKKLHDKRQYEKQKSIKKEINSALKR 164 >gi|182414534|ref|YP_001819600.1| SsrA-binding protein [Opitutus terrae PB90-1] gi|177841748|gb|ACB76000.1| SsrA-binding protein [Opitutus terrae PB90-1] Length = 158 Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 2/158 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ ++ + + N KA +Y + FEAGI L GTEVKS+R + ISD++ E Sbjct: 1 MAAANK-DARRYTEIRNAKALRDYFVDERFEAGIQLHGTEVKSIRAGRAQISDAFGRVEK 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N++I +Y N +NH +R RKLLL + ++ ++ A+ G L+P+++Y Sbjct: 60 GELWLHNAHIEQYAFGNIYNHDAKRVRKLLLHRHQVRKIQQALDSGGRALIPLRMYLKE- 118 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L K+++AL GKK +DKRET KK+ R + +++ Sbjct: 119 ALVKVEVALCTGKKLFDKRETLKKKAELRDVDKAMKQF 156 >gi|148925995|ref|ZP_01809681.1| small protein B like protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145845474|gb|EDK22566.1| small protein B like protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 150 Score = 143 bits (360), Expect = 9e-33, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRTGRANLKDSFVRIIKNEIFLLNSHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149 >gi|187736065|ref|YP_001878177.1| SsrA-binding protein [Akkermansia muciniphila ATCC BAA-835] gi|187426117|gb|ACD05396.1| SsrA-binding protein [Akkermansia muciniphila ATCC BAA-835] Length = 152 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 86/147 (58%), Gaps = 2/147 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +S N+KAR +Y I+ ++E G+ L GTEVKS+R KVNI+DS+A EN ++ L I + Sbjct: 5 ISTNKKARRDYEILDTYECGMELKGTEVKSIRAGKVNIADSFARVENGQMLLYGCDIQPW 64 Query: 74 LQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 A F H RR R+LLL KREI +L + G +LV +K+Y+ G K+ L L +G Sbjct: 65 ETAGEFFQHQARRPRRLLLHKREIFKLEQQTSQKGCSLVALKLYWK-NGKVKLALGLGKG 123 Query: 133 KKNYDKRETEKKRDWDRQKHRILREHN 159 K + D+R K R R+ R + N Sbjct: 124 KTHRDQRYDLKARVEMREAQREVARIN 150 >gi|86150707|ref|ZP_01068923.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315124584|ref|YP_004066588.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841877|gb|EAQ59123.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315018306|gb|ADT66399.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315929894|gb|EFV09054.1| ssrA-binding protein [Campylobacter jejuni subsp. jejuni 305] Length = 150 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEARVAMKNY 149 >gi|57237987|ref|YP_179236.1| SsrA-binding protein [Campylobacter jejuni RM1221] gi|205355851|ref|ZP_03222620.1| small protein B [Campylobacter jejuni subsp. jejuni CG8421] gi|67461261|sp|Q5HTZ9|SSRP_CAMJR RecName: Full=SsrA-binding protein gi|57166791|gb|AAW35570.1| SsrA-binding protein [Campylobacter jejuni RM1221] gi|205346285|gb|EDZ32919.1| small protein B [Campylobacter jejuni subsp. jejuni CG8421] gi|284926334|gb|ADC28686.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315058546|gb|ADT72875.1| tmRNA-binding protein SmpB [Campylobacter jejuni subsp. jejuni S3] Length = 150 Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEAKAAMKNY 149 >gi|300813929|ref|ZP_07094233.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511992|gb|EFK39188.1| SsrA-binding protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 153 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 2/147 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +S N+KAR+ Y I +EAGI L GTEVKS+R NI D++ +N E Sbjct: 1 MKKKKADANN-LSQNKKARHEYFIEDIYEAGIELKGTEVKSIRNGSANIKDAFCQIKNGE 59 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +++ N ++ Y + N +N P R RKLLL K EI +L G +++P+++Y + KG Sbjct: 60 MFIYNMHVAPYEEGNIYNVDPLRTRKLLLHKTEIRKLEKIKNLQGYSIIPLRLYLS-KGR 118 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDR 149 K ++A A+GKK YDKR K++ + Sbjct: 119 VKAEIATAKGKKLYDKRADMAKKEVQK 145 >gi|113953141|ref|YP_729360.1| SsrA-binding protein [Synechococcus sp. CC9311] gi|123031933|sp|Q0IDW2|SSRP_SYNS3 RecName: Full=SsrA-binding protein gi|113880492|gb|ABI45450.1| SsrA-binding protein [Synechococcus sp. CC9311] Length = 164 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 DNR AR+ Y I+ + E GI L GTEVKS+R + N+ D + E+ L N +I + Sbjct: 22 DNRLARHQYEILETLETGIELLGTEVKSVRAGQANLRDGFCLIRRGELHLHNVHISPHTH 81 Query: 76 AN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 A+ FNH P R R+LL +REI +L + + G+TL+P+ ++ K+ + L +G+K Sbjct: 82 ASRYFNHDPLRVRRLLAHRREIDKLRGHLEQKGLTLIPLNLHLQGS-WIKVTIGLGKGRK 140 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR K + ++ + + Sbjct: 141 LHDKRAAAKDKQVKKETRDAIARY 164 >gi|291295932|ref|YP_003507330.1| SsrA-binding protein [Meiothermus ruber DSM 1279] gi|290470891|gb|ADD28310.1| SsrA-binding protein [Meiothermus ruber DSM 1279] Length = 143 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 67/137 (48%), Positives = 97/137 (70%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 +NRKAR++Y I+ +FEAG+ L GTEVKS+R +V+ + ++A F+N E++L N YI Y + Sbjct: 5 ENRKARHDYEILETFEAGLALKGTEVKSIRTGQVDFTGTFARFQNGELFLENLYIAPYEK 64 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 NH PRR RKLLL + E+++L A V + G+TLVP+KIYFN +G AK+ LALA+GK+ Sbjct: 65 GGYTNHDPRRLRKLLLHRHELNKLKARVEQKGLTLVPLKIYFNQQGKAKLLLALARGKRA 124 Query: 136 YDKRETEKKRDWDRQKH 152 Y K+ +KK R+ Sbjct: 125 YQKKADDKKLAVRRELE 141 >gi|88596069|ref|ZP_01099306.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 84-25] gi|88190910|gb|EAQ94882.1| SsrA-binding protein [Campylobacter jejuni subsp. jejuni 84-25] Length = 150 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ FEAGIVL G+EV +LR + N+ DS+ +EI+L NS+I Sbjct: 2 KIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDSFVRIIKNEIFLLNSHIS 61 Query: 72 EYLQANRFNHYPRR-NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F + R RKLL+ +++I +L V +G T+V + +YFN K K LALA Sbjct: 62 LLHTTHSFYKHKERGARKLLMHRKQIDKLLGKVSIEGYTIVALDLYFNTKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET KK+ D + ++ + Sbjct: 122 KGKNLHDKRETLKKKQADLEARAAMKNY 149 >gi|154149176|ref|YP_001406667.1| SsrA-binding protein [Campylobacter hominis ATCC BAA-381] gi|166222374|sp|A7I2C6|SSRP_CAMHC RecName: Full=SsrA-binding protein gi|153805185|gb|ABS52192.1| SsrA-binding protein [Campylobacter hominis ATCC BAA-381] Length = 153 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 57/148 (38%), Positives = 94/148 (63%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K ++ N+KA +N+ I+ +FEAGIVL G+EVK+LR+ + N+ DS+ E++L N++I Sbjct: 2 KELTKNKKAWHNFTIIENFEAGIVLKGSEVKALRMGRANLKDSFCRIIKGELFLLNAHIS 61 Query: 72 EYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 N F RKLL+ K+EI+RL+ AV ++GM +V + +Y N K K +ALA Sbjct: 62 FLENTNAFFRPSENGARKLLMHKKEINRLFGAVSKEGMAIVALSLYLNDKNKVKARIALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRE K+++ +R+ ++ + Sbjct: 122 KGKNLHDKREALKRKEAEREAQSAMKRY 149 >gi|262341166|ref|YP_003284021.1| SsrA-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272503|gb|ACY40411.1| SsrA-binding protein [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 149 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 65/142 (45%), Positives = 96/142 (67%) Query: 15 SDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYL 74 NRKAR+ YH + + AGI L GTEVKS+R +KVNI DS+ +N E++ YI EY Sbjct: 3 ILNRKARFQYHFLEYYVAGIQLFGTEVKSVRQNKVNIVDSFCQMQNGELYSIGMYIAEYK 62 Query: 75 QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 +NH RR RKLLL+K+E+ ++ ++ G+T+VP++++FN KG K+ + LA+GKK Sbjct: 63 FGTNWNHSSRRQRKLLLNKKELKKINKKLKDTGLTIVPIELFFNDKGYVKMKIVLAKGKK 122 Query: 135 NYDKRETEKKRDWDRQKHRILR 156 YDKRE+ +KRD R+ + L+ Sbjct: 123 TYDKRESLRKRDSLREIKQSLK 144 >gi|78780094|ref|YP_398206.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9312] gi|123553674|sp|Q318C5|SSRP_PROM9 RecName: Full=SsrA-binding protein gi|78713593|gb|ABB50770.1| SsrA-binding protein [Prochlorococcus marinus str. MIT 9312] Length = 164 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 2/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 + K +++NR A++ Y I + EAGI L GTEVKS+R K N+ D Y +F + E Sbjct: 10 KNTNKENNFKRLAENRYAKFQYAISETIEAGIELLGTEVKSIRNGKANLRDGYCSFRDGE 69 Query: 63 IWLTNSYIPEYLQA-NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 I L N +I + + FNH P RNRKLLL K+EI +L + + GMT+VP+ +Y Sbjct: 70 ILLLNVHISPHKNVGSFFNHDPLRNRKLLLHKKEIIKLKSNTEKKGMTIVPLSMYLKGS- 128 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ L + +GKK +DKR+ EK++ ++ + +L+ Sbjct: 129 WIKLTLGVGKGKKLHDKRQDEKQKSIKKEINSVLKR 164 >gi|282882313|ref|ZP_06290944.1| SsrA-binding protein [Peptoniphilus lacrimalis 315-B] gi|281297863|gb|EFA90328.1| SsrA-binding protein [Peptoniphilus lacrimalis 315-B] Length = 153 Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 88/147 (59%), Gaps = 2/147 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + +S N+KAR+ Y I +EAGI L GTEVKS+R NI D++ +N E Sbjct: 1 MKKKKADANN-LSQNKKARHEYFIEDIYEAGIELKGTEVKSIRNGSANIKDAFCQIKNGE 59 Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 +++ N ++ Y + N +N P R RKLLL KREI +L G +++P+++Y + KG Sbjct: 60 MFIYNMHVAPYEEGNIYNVDPLRTRKLLLHKREIRKLEKIKNLQGYSIIPLRLYLS-KGR 118 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDR 149 K ++A A+GKK YDKR K++ + Sbjct: 119 VKAEIATAKGKKLYDKRADMAKKEVQK 145 >gi|91216463|ref|ZP_01253429.1| ssrA-binding (tmRNA-binding) protein [Psychroflexus torquis ATCC 700755] gi|91185257|gb|EAS71634.1| ssrA-binding (tmRNA-binding) protein [Psychroflexus torquis ATCC 700755] Length = 154 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 62/141 (43%), Positives = 96/141 (68%), Gaps = 1/141 (0%) Query: 20 ARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYIPEYLQANR 78 AR+ Y I+ + AGIVL GTE+KS+R K I++S+ F E E+++ N + EY A Sbjct: 13 ARFQYEILDKYTAGIVLAGTEIKSIREGKATITESFCEFNEQGELFVINMDVQEYSHATH 72 Query: 79 FNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDK 138 FNH P+ RKLLL+K+E+ +L V+ G+T++P++++ N +G AK+ +AL++GKK +DK Sbjct: 73 FNHKPKNARKLLLNKKELKKLLKEVKNSGLTIIPLRLFLNDRGFAKLQIALSKGKKLHDK 132 Query: 139 RETEKKRDWDRQKHRILREHN 159 RET K RD R+ +RI + N Sbjct: 133 RETIKDRDTKRKLNRINKTFN 153 >gi|326336149|ref|ZP_08202321.1| SsrA-binding protein [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691658|gb|EGD33625.1| SsrA-binding protein [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 155 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 64/142 (45%), Positives = 98/142 (69%), Gaps = 1/142 (0%) Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYIPEYLQA 76 ++A + Y I+ + AGIVL GTE+KS+R+ K +I +S+ F E +E+++ N I EY Sbjct: 11 KRAHFEYEILDKYIAGIVLKGTEIKSIRLGKASIVESFCEFNEKEELFVINMTIEEYAWG 70 Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 +NH P+ RKLLL K+E+ +L+ V+ G+T+VP++I+ KGLAK+++AL +GKK Y Sbjct: 71 TYYNHKPKSERKLLLKKQELRKLHKEVKNTGLTIVPLRIFIQEKGLAKMEIALVRGKKLY 130 Query: 137 DKRETEKKRDWDRQKHRILREH 158 DKRET K+RD RQ RI ++ Sbjct: 131 DKRETIKERDNKRQLDRIKKDF 152 >gi|260654873|ref|ZP_05860361.1| SsrA-binding protein [Jonquetella anthropi E3_33 E1] gi|260630375|gb|EEX48569.1| SsrA-binding protein [Jonquetella anthropi E3_33 E1] Length = 156 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 71/154 (46%), Positives = 98/154 (63%), Gaps = 1/154 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +P KV + NRKAR++Y I+ + E G+VLTGTE+KS+R + N+ D YA F++ E+WL Sbjct: 3 NSPDDKVAAVNRKARHDYEILETMECGLVLTGTEIKSIRAGRANLKDGYAKFKDGELWLE 62 Query: 67 NSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I Y +A P R RKLLL +RE+ RL A V+ G TLVP+K+Y LAKI Sbjct: 63 NVHISPYEKATAWVKVEPHRARKLLLHRRELRRLQAKVKERGFTLVPLKLYVKGGKLAKI 122 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +L LA+GK D+R+ ++RD R R LR N Sbjct: 123 ELGLARGKSAADRRDDIRERDVQRSIARELRNRN 156 >gi|196234697|ref|ZP_03133510.1| SsrA-binding protein [Chthoniobacter flavus Ellin428] gi|196221245|gb|EDY15802.1| SsrA-binding protein [Chthoniobacter flavus Ellin428] Length = 153 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +S NRKA +YHI+ FEAG+ L GTEVKS+R+ NI++++A EN + ++ + I Y Sbjct: 5 ISVNRKALRDYHILERFEAGLELKGTEVKSIRLGLANINNAFARVENGQAYVYDIDIQPY 64 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 ++A+ H +R R+LLL K+EI RL+ + G TLV +++Y+ KI++A+ +GK Sbjct: 65 VRASFEQHESKRIRRLLLHKQEIDRLFGQTQIKGHTLVALRLYWKD-ARVKIEIAVGKGK 123 Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159 + DKR+ K + R+ R + N Sbjct: 124 EAGDKRQDLKAKATKRETDREVARFN 149 >gi|114848895|gb|ABI83658.1| tmRNA-binding protein [Coxiella endosymbiont of Amblyomma americanum] Length = 154 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 91/146 (62%), Gaps = 2/146 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 +++ N+K ++Y+I + EAG+VL E+KS+R + + +SY F++ E WL Sbjct: 2 KQSALRIIVLNKKTFHDYYIEQRLEAGLVLESWEIKSIRAGHIQLRNSYVIFKSREAWLI 61 Query: 67 NSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 + P A P+R+RKLLL+K EI RL + V++ +T+VP+ +++ K K Sbjct: 62 GVHCSPPSNIAYHVKPDPKRSRKLLLNKHEIDRLLSTVQKKRLTVVPLDLHW-YKNHVKT 120 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQK 151 ++AL +GK+ +DKRET K+R+W+R+K Sbjct: 121 EVALVRGKRMHDKRETIKRREWERKK 146 >gi|57167992|ref|ZP_00367131.1| SsrA-binding protein [Campylobacter coli RM2228] gi|305431857|ref|ZP_07401024.1| SsrA-binding protein [Campylobacter coli JV20] gi|57020366|gb|EAL57035.1| SsrA-binding protein [Campylobacter coli RM2228] gi|304444941|gb|EFM37587.1| SsrA-binding protein [Campylobacter coli JV20] Length = 150 Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I+ FE+G+VL G+EV +LR + N+ DS+ E++L N++I Sbjct: 2 KVIARNKKALFDYSIIERFESGVVLKGSEVVALRAGRANLKDSFVRIIKGELFLLNAHIS 61 Query: 72 EYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + + H R RKLL+ +++I +L V +G TLV +++YFN K K LALA Sbjct: 62 HLSTTHSYYKHEERAARKLLMHRKQIDKLLGKVSIEGYTLVVLELYFNHKNKVKATLALA 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRE+ KK+ D + ++ + Sbjct: 122 KGKNLHDKRESLKKKQADMEARSAMKNY 149 >gi|225157629|ref|ZP_03725019.1| SsrA-binding protein [Opitutaceae bacterium TAV2] gi|224802696|gb|EEG20949.1| SsrA-binding protein [Opitutaceae bacterium TAV2] Length = 157 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 1/158 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M + + + N KA +Y + FEAGI L GTEVKS+R + ISD++ FE Sbjct: 1 MCAAKKKDTKRYTEVRNAKALRDYTVEERFEAGIQLKGTEVKSIRAGRAQISDAFGRFEK 60 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E+WL N++I EY N +NH RR RKLLL K ++ ++ A++ L+P+++YF Sbjct: 61 GELWLYNAHIEEYSFGNIYNHDARRIRKLLLHKHQMRKIAQAMQVGARALIPLRMYFKDS 120 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 L KI++AL GKK YDKR +KR+ D + + + Sbjct: 121 -LVKIEVALGVGKKLYDKRADLRKRESDMEVKKAFKYR 157 >gi|94676475|ref|YP_588997.1| SsrA-binding protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|187611471|sp|Q1LSR7|SSRP_BAUCH RecName: Full=SsrA-binding protein gi|94219625|gb|ABF13784.1| SsrA-binding protein [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 161 Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 94/158 (59%), Gaps = 5/158 (3%) Query: 3 LKSRGN---PPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 +K++ ++ N++ RY Y I + FEAGI L G EVKSLR V+I+DSY + Sbjct: 1 MKNQTPCRVSKITTITQNKRVRYEYFIEQEFEAGISLLGWEVKSLRAGIVHINDSYILLK 60 Query: 60 NDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 + E +L + + P + ++ + P R+RKLLL +RE+ L V R G T+VP+ +Y+ Sbjct: 61 DSEAFLLGATLRPLIVASSHILYSPMRSRKLLLRRRELDTLLGKVHRKGYTIVPISLYWR 120 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 LAKI L +A+GKK YDKR K+R+W K RI + Sbjct: 121 -NSLAKIQLGIAKGKKQYDKRHCIKEREWLLNKARITK 157 >gi|315644598|ref|ZP_07897730.1| SsrA-binding protein [Paenibacillus vortex V453] gi|315280105|gb|EFU43402.1| SsrA-binding protein [Paenibacillus vortex V453] Length = 159 Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 73/159 (45%), Positives = 99/159 (62%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M KS G KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R +VNI D++AT N Sbjct: 1 MGKKSDG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRVNIGDAFATIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EI + N +I + Q NR N P R RKLLL K +I +L ++DG +VP+KIY Sbjct: 57 GEIHIHNMHISPFEQGNRNNPLDPTRTRKLLLHKEQIRKLLGLSKQDGYAIVPLKIYIR- 115 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GK+ YDKR K+D R R LRE Sbjct: 116 NGYAKLLLGLGKGKRQYDKRADAAKKDAQRDIQRALREK 154 >gi|195953392|ref|YP_002121682.1| SsrA-binding protein [Hydrogenobaculum sp. Y04AAS1] gi|195933004|gb|ACG57704.1| SsrA-binding protein [Hydrogenobaculum sp. Y04AAS1] Length = 158 Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 5/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSK-VNISDSYATFE 59 M + + N P+ V N++ + +V +++AGI L G E+KS+R + V+ D++ E Sbjct: 1 MKKQEQNNTPRYV---NKEGLHENEVVETYQAGIELLGPEIKSIRNKQTVSFKDAFVRIE 57 Query: 60 NDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 N E +L N YI Y A P R RKLLL KREI RL + G T++P+ +YF Sbjct: 58 NGEAFLHNLYIAPYKYATIKPPDPLRKRKLLLHKREILRLLGKSKEKGYTIIPLSLYFK- 116 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G K+D+AL +GKK YDKR+ K++D R+ R + Sbjct: 117 NGKVKVDIALVKGKKLYDKRKELKEKDIKRELQREFKGR 155 >gi|329927597|ref|ZP_08281760.1| SsrA-binding protein [Paenibacillus sp. HGF5] gi|328938386|gb|EGG34776.1| SsrA-binding protein [Paenibacillus sp. HGF5] Length = 159 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 72/159 (45%), Positives = 98/159 (61%), Gaps = 6/159 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M KS G KV++ N+KA ++Y I ++EAG+VLTGTE+KS+R + NI D++AT N Sbjct: 1 MGKKSDG----KVLAQNKKASHDYFIEDTYEAGMVLTGTEIKSIRNGRANIGDAFATIRN 56 Query: 61 DEIWLTNSYIPEYLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 EI + N +I + Q NR N P R RKLLL K +I +L ++DG +VP+KIY Sbjct: 57 GEIHIHNMHISPFEQGNRNNPTDPTRTRKLLLHKEQIRKLLGLSKQDGYAIVPLKIYIR- 115 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 G AK+ L L +GK+ YDKR K+D R R LRE Sbjct: 116 NGYAKLLLGLGKGKRQYDKRADAAKKDAQRDIQRALREK 154 >gi|304373053|ref|YP_003856262.1| Trans-translation protein, binds tmRNA and tRNA [Mycoplasma hyorhinis HUB-1] gi|304309244|gb|ADM21724.1| Trans-translation protein, binds tmRNA and tRNA [Mycoplasma hyorhinis HUB-1] gi|330723330|gb|AEC45700.1| SsrA-binding protein [Mycoplasma hyorhinis MCLD] Length = 145 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 55/148 (37%), Positives = 99/148 (66%), Gaps = 4/148 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+ A Y+Y I+ +FEAGI L G EVKS+R +KVN+ +S+A F++ E++ +N++I Sbjct: 2 KIIAKNKVAYYDYEILETFEAGISLMGWEVKSIRANKVNLKNSFAYFKDLELYWSNAHIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y+ R RKLL+ K E+ +++ + +TL+P+ +Y+ G K++LALA+ Sbjct: 62 LYMAVKGDEQ---RTRKLLMHKSELKKIHFKKTTNRLTLIPLSLYWKQ-GKIKLELALAK 117 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREHN 159 GK YDKR++EK ++ R+ ++L+ ++ Sbjct: 118 GKTKYDKRQSEKAKEEKRKIEKMLKNYS 145 >gi|163788561|ref|ZP_02183006.1| SsrA RNA binding protein [Flavobacteriales bacterium ALC-1] gi|159875798|gb|EDP69857.1| SsrA RNA binding protein [Flavobacteriales bacterium ALC-1] Length = 152 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 62/147 (42%), Positives = 94/147 (63%), Gaps = 1/147 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE-IWLTNSYIP 71 V N+KA++ Y I+ + AGIVLTGTE+KS+R K +I++S+ F + E +++ N + Sbjct: 5 VNILNKKAKFQYEILDKYTAGIVLTGTEIKSIRSGKASIAESFCEFNDREELFVINMTVE 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY N +NH P+ RKLLL+++E+ +L + G ++P+K+Y N KG AK+ + L + Sbjct: 65 EYAFGNYYNHKPKAERKLLLNRKELKKLKKEMDVKGNAIIPLKLYINEKGFAKLIIGLGK 124 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRET K RD R RI + Sbjct: 125 GKKLYDKRETIKDRDNKRDLDRIKKNF 151 >gi|110004072|emb|CAK98411.1| probable ssra-binding protein rna-binding [Spiroplasma citri] Length = 143 Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 94/137 (68%), Gaps = 1/137 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KARYNY I+ ++EAGIVLTG+E+KS+R + V+I++++ +E + N I + Sbjct: 3 TITVNKKARYNYEIIETYEAGIVLTGSEIKSIRNNDVSINEAFVIIRKNEAFAINMIIAQ 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + + R RKLLL K+EI ++ ++ + +TLVP+K+Y AK+++AL +G Sbjct: 63 YKFSTAYVPDADRTRKLLLHKKEIKKILQRIKLERLTLVPLKLYLK-NNYAKLEIALVRG 121 Query: 133 KKNYDKRETEKKRDWDR 149 KKNYDKRET K+RD +R Sbjct: 122 KKNYDKRETIKQRDNER 138 >gi|87123214|ref|ZP_01079065.1| tmRNA binding protein SmpB [Synechococcus sp. RS9917] gi|86168934|gb|EAQ70190.1| tmRNA binding protein SmpB [Synechococcus sp. RS9917] Length = 164 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 48/144 (33%), Positives = 82/144 (56%), Gaps = 2/144 (1%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 DNR AR+ Y I+ + + GI L GTEVKS+R + N+ D + N E+ L N +I + Sbjct: 22 DNRLARHQYEILETLKTGIELVGTEVKSIRAGQANLRDGFCLIRNGELQLHNVHIAPHSH 81 Query: 76 AN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKK 134 A+ +NH P R R+LL +REI +L + + G+ L+P+ ++ K+ + L +G+K Sbjct: 82 ASGYYNHDPLRVRRLLAHRREIDKLRGQLDQKGLALIPLNMHLQGS-WIKVTIGLGKGRK 140 Query: 135 NYDKRETEKKRDWDRQKHRILREH 158 +DKR EK++ ++ + + Sbjct: 141 LHDKRAAEKEKQLKKETRAAIARY 164 >gi|322650477|gb|EFY46887.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 147 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 45/120 (37%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 E WL + + + P R RKLLL++RE+ LY + R+G T+V + +Y+ Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKK 135 >gi|301166051|emb|CBW25625.1| SsrA-binding protein [Bacteriovorax marinus SJ] Length = 149 Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE-NDEIWLTNS 68 KV++ N++A ++Y + EAGIVL GTEVKSLR KV+I++S+ T + N E+W N Sbjct: 2 GIKVIAKNKRAHFDYQLEDKLEAGIVLVGTEVKSLRNGKVSIAESHITIDGNGEVWAFNI 61 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 IP+Y N NH R RKLLL+ +EI +L+ ++ +T+VP IYF K+++A Sbjct: 62 KIPQYEFGNINNHVEDRKRKLLLNAKEITKLFHKMKAQNLTIVPTMIYFKGSN-VKLEIA 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHR 153 L +GKK +DKR E+K+ R+ + Sbjct: 121 LGRGKKLHDKRADEQKKTVQRKLQK 145 >gi|240047684|ref|YP_002961072.1| SsrA-binding protein [Mycoplasma conjunctivae HRC/581] gi|239985256|emb|CAT05269.1| SsrA-binding protein [Mycoplasma conjunctivae] Length = 144 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 97/147 (65%), Gaps = 4/147 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++S+N+ A+++Y I+ + AGI L G EVKS+R +VN+ +S+ F+++E+++TN ++ Sbjct: 2 KIISNNKIAKFDYQILDDYVAGISLLGWEVKSIRAGQVNLRNSFCYFKDNELFVTNMHVS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 EY+ P R+RKLLL + ++++L + +T++P+ I + G K+ +ALA+ Sbjct: 62 EYMNVK---GDPTRSRKLLLKRSQLNKLLKQKTQQKLTIIPLNIGWK-NGKIKLTIALAK 117 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GK YDKR++ K++D R+ ++ + + Sbjct: 118 GKTKYDKRQSIKEKDEKRKIEKLWKNY 144 >gi|169333799|ref|ZP_02860992.1| hypothetical protein ANASTE_00185 [Anaerofustis stercorihominis DSM 17244] gi|169259364|gb|EDS73330.1| hypothetical protein ANASTE_00185 [Anaerofustis stercorihominis DSM 17244] Length = 159 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 57/136 (41%), Positives = 87/136 (63%), Gaps = 2/136 (1%) Query: 22 YNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWLTNSYIPEYLQANRFN 80 + YHI+ ++EAG+ L GTEVKS+R KVN+ DSYA +N+E+++ ++ Y N N Sbjct: 21 FEYHIIETYEAGLELKGTEVKSIRNGKVNLKDSYANISKNNEVFIIGMHVSPYEFGNINN 80 Query: 81 HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRE 140 P R RKLLL+KREI + + +DG TL+P+ ++F+ K K+ +A+ +GKK YDKRE Sbjct: 81 VDPLRERKLLLNKREIRNIKDYLTKDGYTLIPLDLHFS-KSYVKMSIAVCKGKKLYDKRE 139 Query: 141 TEKKRDWDRQKHRILR 156 K++ R R + Sbjct: 140 ALKEKAAKRDIDRNFK 155 >gi|254445797|ref|ZP_05059273.1| SsrA-binding protein [Verrucomicrobiae bacterium DG1235] gi|198260105|gb|EDY84413.1| SsrA-binding protein [Verrucomicrobiae bacterium DG1235] Length = 158 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 93/157 (59%), Gaps = 3/157 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + + P+ + N K +Y + +FEAGIVL+GTEVKS+R K +SD + F Sbjct: 1 MAAKKKSSTPQDI--RNSKVHRDYLVENTFEAGIVLSGTEVKSIRAGKAQVSDGFCRFNK 58 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120 E ++ +I EY N NH PRR RKLLL K E+ ++ A+ G + +P ++YF Sbjct: 59 GEFFIYGLHIDEYAFGNINNHIPRRERKLLLKKSELKKIERALEAGGKSAIPTRLYFKE- 117 Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 L K+++ + GKK +DKRE KK+ R+ R+++E Sbjct: 118 ALIKVEVGICTGKKLFDKREDLKKKSQMREIDRVMKE 154 >gi|26553806|ref|NP_757740.1| SsrA-binding protein [Mycoplasma penetrans HF-2] gi|30173301|sp|Q8EW52|SSRP_MYCPE RecName: Full=SsrA-binding protein gi|26453813|dbj|BAC44144.1| tmRNA-binding small protein B [Mycoplasma penetrans HF-2] Length = 146 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 61/145 (42%), Positives = 92/145 (63%), Gaps = 1/145 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++ N+K +NY ++ EAGI L G EVKS+ ++ NISDSY F+ +E ++ N I Sbjct: 2 KILVVNKKLHFNYEVLEKIEAGIELKGVEVKSIHLNNANISDSYVIFKRNEAYILNMNIA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y N +N P R RKLLL K EI + ++++ +T+VP KIY+ K K+++ALA+ Sbjct: 62 PYSHGNIYNVDPLRTRKLLLHKNEIIKYQMRIKKESLTMVPSKIYWR-KNKLKVEIALAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKR+T K RD R+ + +R Sbjct: 121 GKKQFDKRQTIKDRDNSREARKHIR 145 >gi|171920645|ref|ZP_02695477.2| SsrA-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178745|ref|ZP_02554634.2| SsrA-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024393|ref|ZP_02570717.2| SsrA-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518480|ref|ZP_02556655.2| SsrA-binding protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524163|ref|ZP_02557500.2| SsrA-binding protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867420|ref|ZP_03079424.1| SsrA-binding protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273448|ref|ZP_03205984.1| SsrA-binding protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554063|ref|YP_002284478.1| SsrA-binding protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550399|ref|ZP_03771348.1| SsrA-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551348|ref|ZP_03772294.1| SsrA-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903374|gb|EDT49663.1| SsrA-binding protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209353|gb|EDU06396.1| SsrA-binding protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018661|gb|EDU56701.1| SsrA-binding protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998250|gb|EDU67347.1| SsrA-binding protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659942|gb|EDX53322.1| SsrA-binding protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660896|gb|EDX54149.1| SsrA-binding protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249968|gb|EDY74748.1| SsrA-binding protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541564|gb|ACI59793.1| SsrA-binding protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379163|gb|EEH01528.1| SsrA-binding protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379553|gb|EEH01915.1| SsrA-binding protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 141 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+ AR NY ++ FE GIVL GTEVKS+ + +I+++Y +E + N ++ + Sbjct: 2 IVSNKHARRNYELLEFFECGIVLKGTEVKSISRANCSINEAYVQIVKNEALILNMHVASF 61 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + N FN P RNRKLLL K+EI +L V+ MT+VP KIY+ K+++ALA+GK Sbjct: 62 FEGNNFNQDPYRNRKLLLHKKEIIKLQHLVQTQRMTIVPTKIYWK-NNKLKVEIALAKGK 120 Query: 134 KNYDKRETEKKRDWDRQ 150 + +DKRE KKRD R+ Sbjct: 121 QLHDKREDLKKRDLARE 137 >gi|22096183|sp|Q9RUC1|SSRP_DEIRA RecName: Full=SsrA-binding protein Length = 143 Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats. Identities = 61/142 (42%), Positives = 87/142 (61%), Gaps = 5/142 (3%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 NR+A + Y ++ FEAGI LTG+EVKS+R V+ D++A ++ L YIP Y + Sbjct: 6 TNRRAHHEYELLERFEAGISLTGSEVKSVRAGGVDFRDAFARINGSDVDLEGLYIPVYKE 65 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 A NH PRR R+LLL + EI +L + + G+TLVP ++Y + K++LALA+GKK Sbjct: 66 ATYNNHEPRRKRRLLLHREEIEKLRRGLEQKGLTLVPTRLYQKGR-YFKVELALARGKKL 124 Query: 136 YDKRETEKKRDWDRQKHRILRE 157 +DKR D +R R LRE Sbjct: 125 HDKRRA----DAERTVARELRE 142 >gi|126640896|ref|YP_001083880.1| SsrA-binding protein [Acinetobacter baumannii ATCC 17978] Length = 124 Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats. Identities = 51/123 (41%), Positives = 76/123 (61%), Gaps = 2/123 (1%) Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLS 92 + L G EVKSLR ++++++SY F+N E +L + I P + R RKLLLS Sbjct: 1 MSLLGWEVKSLRAGRMSLTESYVIFKNGEAFLFGAQIQPLLSASTHIVPEATRTRKLLLS 60 Query: 93 KREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152 +RE+ +L AV + G + VP+ Y+ L K+++AL +GK+ +DKR TEK+RDW R K Sbjct: 61 RRELEKLMGAVNQKGYSCVPLACYWKGH-LVKLEIALVKGKQLHDKRATEKERDWQRDKA 119 Query: 153 RIL 155 RI Sbjct: 120 RIF 122 >gi|13357614|ref|NP_077888.1| SsrA-binding protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971062|ref|ZP_02553339.1| SsrA-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282106|ref|ZP_02689773.1| SsrA-binding protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308265|ref|ZP_02690940.1| SsrA-binding protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170762068|ref|YP_001752137.1| SsrA-binding protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|14195227|sp|Q9PR87|SSRP_UREPA RecName: Full=SsrA-binding protein gi|189046852|sp|B1AI43|SSRP_UREP2 RecName: Full=SsrA-binding protein gi|11279400|pir||D82939 small protein B UU058 [imported] - Ureaplasma urealyticum gi|6899007|gb|AAF30463.1|AE002105_4 small protein B [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827645|gb|ACA32907.1| SsrA-binding protein [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902801|gb|EDT49090.1| SsrA-binding protein [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675880|gb|EDT87785.1| SsrA-binding protein [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700958|gb|EDU19240.1| SsrA-binding protein [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 141 Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 86/137 (62%), Gaps = 1/137 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+ AR NY ++ FE GIVL GTEVKS+ + +I+++Y ++ + N ++ + Sbjct: 2 IVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANF 61 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 + N FN P RNRKLLL K+EI RL V+ MT+VP KIY+ KI++AL +GK Sbjct: 62 FEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWK-NNKLKIEIALGKGK 120 Query: 134 KNYDKRETEKKRDWDRQ 150 + +DKRE KKRD R+ Sbjct: 121 QLHDKREDIKKRDLARE 137 >gi|3322448|gb|AAC65169.1| small protein (smpB) [Treponema pallidum subsp. pallidum str. Nichols] Length = 134 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 54/129 (41%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 27 VRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRN 86 E GI L GTEVKS+R ++ D++A E+WL N +I EY+ A F P R Sbjct: 2 EDRLECGIALEGTEVKSVRAGHLSFPDAFAEMRGGELWLKNVHIAEYVHACSFAPNPDRM 61 Query: 87 RKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRD 146 RKLL + +I RL V G TLVP++ Y A G K+ L + +GKK +DKR K RD Sbjct: 62 RKLLAHRDQIARLKRKVEEKGYTLVPLEFYLKA-GRVKVALGICKGKKLFDKRAQIKARD 120 Query: 147 WDRQKHRIL 155 R+ R L Sbjct: 121 NARELSRSL 129 >gi|94984926|ref|YP_604290.1| SsrA-binding protein [Deinococcus geothermalis DSM 11300] gi|122986662|sp|Q1J063|SSRP_DEIGD RecName: Full=SsrA-binding protein gi|94555207|gb|ABF45121.1| SsrA-binding protein [Deinococcus geothermalis DSM 11300] Length = 143 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 1/137 (0%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 NR+A + Y ++ FEAGI LTG+EVKS+R V+ D++A N + L YIP Y + Sbjct: 6 TNRRAHHEYELLERFEAGIALTGSEVKSVRAGGVDFRDAFARLNNGNVELEGLYIPTYTE 65 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 A NH PRR R+LLL + EI +L A+ + G+TLVP ++Y + + K++LALA+GKK Sbjct: 66 ATYNNHEPRRTRRLLLHREEIGKLKRALEQKGLTLVPTRLYQKGR-VFKVELALARGKKL 124 Query: 136 YDKRETEKKRDWDRQKH 152 +DKR E ++ R+ Sbjct: 125 HDKRRAEAEKTLRRELR 141 >gi|189219134|ref|YP_001939775.1| tmRNA-binding protein [Methylacidiphilum infernorum V4] gi|189185992|gb|ACD83177.1| tmRNA-binding protein [Methylacidiphilum infernorum V4] Length = 152 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 90/146 (61%), Gaps = 2/146 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + NR+AR +Y I+++ EAGIVL G+EVKSL+ K ++ ++A EN E +L I Y Sbjct: 5 LVVNRRARKDYQILKTLEAGIVLLGSEVKSLKAGKGSLEGAFARVENGEAFLYQMNISPY 64 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + A+ P+ RKLLL K+EI L A+ R G T+VP+K+YF +G K+ L +A G Sbjct: 65 EKAASYALRDPKAPRKLLLHKKEIGELAGAISRQGRTIVPLKLYFR-RGKIKVLLGIASG 123 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 + DKRE K+++ R+ R+L+ Sbjct: 124 RSKVDKREKIKEQETQREISRVLKRR 149 >gi|320334440|ref|YP_004171151.1| SsrA-binding protein [Deinococcus maricopensis DSM 21211] gi|319755729|gb|ADV67486.1| SsrA-binding protein [Deinococcus maricopensis DSM 21211] Length = 140 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 58/137 (42%), Positives = 88/137 (64%), Gaps = 1/137 (0%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 NR+A Y Y ++ FEAGI LTG+EVKS+R V+ D++A N + L YIPEY Sbjct: 3 TNRRAHYEYELLERFEAGIQLTGSEVKSVRAGGVDFRDAFARVTNGNVDLEGLYIPEYKD 62 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 A NH PRR R+LLL ++EI +L A+ + G++L+P ++Y + K+++A+A+GKK Sbjct: 63 ATYNNHAPRRTRRLLLHRQEIEKLRRALTQKGLSLIPTRLYQKGRHF-KVEVAVARGKKL 121 Query: 136 YDKRETEKKRDWDRQKH 152 +DKR E+ R+ R+ Sbjct: 122 HDKRRAEQDREARREMR 138 >gi|308064201|gb|ADO06088.1| SsrA-binding protein [Helicobacter pylori Sat464] Length = 152 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR++ K++ +++ L+ H Sbjct: 122 KGKKLHDKRQSLKEKALNKEILADLKHH 149 >gi|317010184|gb|ADU80764.1| SsrA-binding protein [Helicobacter pylori India7] Length = 152 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|189485140|ref|YP_001956081.1| SsrA-binding protein SmpB [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287099|dbj|BAG13620.1| SsrA-binding protein SmpB [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 153 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 59/146 (40%), Positives = 92/146 (63%), Gaps = 2/146 (1%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK +S NRKA YNY I+ E GIVL+G EVKS R S +++ DS F + E + N +I Sbjct: 7 KKTLSSNRKAYYNYEILEKLETGIVLSGYEVKSARQSNISLVDSVVRFSDCEAFAENMFI 66 Query: 71 PEYLQANRF--NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 Y Q + ++ +R RKLL+ K EI+++ V+ G+T++P+++Y +G K+ + Sbjct: 67 ASYEQISTHIADYDAKRKRKLLMHKSEINKMRTKVKEKGLTVIPLEVYIGNRGKIKLLIG 126 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRI 154 LA+GKK Y+K+E KK+D +R+ R Sbjct: 127 LAKGKKTYNKKEALKKKDIEREVARE 152 >gi|261838719|gb|ACX98485.1| SsrA-binding protein [Helicobacter pylori 51] Length = 152 Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR++ K++ +++ L+ H Sbjct: 122 KGKKLHDKRQSLKEKALNKEILADLKHH 149 >gi|194476932|ref|YP_002049111.1| SsrA-binding protein [Paulinella chromatophora] gi|171191939|gb|ACB42901.1| SsrA-binding protein [Paulinella chromatophora] Length = 166 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 2/154 (1%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 ++++ NR ARY Y I E GI L GTEVKS+R+ KVN+ D + +EI L Sbjct: 14 RKGSNRLLASNRFARYQYEIFEVLETGIELLGTEVKSIRLGKVNLRDGFCLIRKNEIKLH 73 Query: 67 NSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 N +I + A+ FNH P R RKLL +EI +L A+ + G++L+P+ +Y K+ Sbjct: 74 NVHISPHSHASAYFNHDPLRVRKLLAHSKEISKLKIALEKKGLSLIPLNLYLKGS-WIKL 132 Query: 126 DLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 + L +G+K +DKR E+++ + +L N Sbjct: 133 SIGLGKGRKLHDKRLEERRKQDAKDIRSVLSRFN 166 >gi|325282889|ref|YP_004255430.1| SsrA-binding protein [Deinococcus proteolyticus MRP] gi|324314698|gb|ADY25813.1| SsrA-binding protein [Deinococcus proteolyticus MRP] Length = 143 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%) Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQA 76 NR+A Y Y ++ +EAG+ LTG+EVKS+R V+ D++A + L YIP Y +A Sbjct: 7 NRRAGYEYELLDRYEAGLSLTGSEVKSIRAGGVDFRDAFARLNGRNVDLEGLYIPPYKEA 66 Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 NH PRR R+LLL + EI ++ A+ + G+TLVP ++Y + K++LA+A+GKK + Sbjct: 67 TYNNHEPRRPRRLLLHRMEIEKIRRALEQKGLTLVPTRMYQQGR-YFKVELAVARGKKLH 125 Query: 137 DKRETEKKRDWDRQKHRILREH 158 DKR D ++ R LRE+ Sbjct: 126 DKRRA----DAEKTVRRELREY 143 >gi|308062707|gb|ADO04595.1| SsrA-binding protein [Helicobacter pylori Cuz20] Length = 152 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR++ K++ +++ L+ H Sbjct: 122 KGKKLHDKRQSLKEKVLNKEILADLKHH 149 >gi|266625926|ref|ZP_06118861.1| SsrA-binding protein [Clostridium hathewayi DSM 13479] gi|288862178|gb|EFC94476.1| SsrA-binding protein [Clostridium hathewayi DSM 13479] Length = 125 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 47/125 (37%), Positives = 77/125 (61%), Gaps = 1/125 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 G K+V++N+KA ++Y I +E GI L GTEVKS+R+ K +I +++ + E+W+ Sbjct: 2 GKESFKLVANNKKAYHDYFIDEKYETGIELAGTEVKSIRMGKCSIKEAFVRIDKGEVWVY 61 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 I Y + N FN P R RKLL+ + EI +L + + G T+VP+++YF L K++ Sbjct: 62 GMNINPYEKGNIFNKDPLRPRKLLMHRAEISKLDSKIAVKGYTIVPLQVYFKGS-LVKLE 120 Query: 127 LALAQ 131 + LA+ Sbjct: 121 IGLAR 125 >gi|109946797|ref|YP_664025.1| SsrA-binding protein [Helicobacter acinonychis str. Sheeba] gi|123173590|sp|Q17ZA0|SSRP_HELAH RecName: Full=SsrA-binding protein gi|109714018|emb|CAJ99026.1| SsrA-binding protein [Helicobacter acinonychis str. Sheeba] Length = 152 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 50/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR+ K++ +++ L+ H Sbjct: 122 KGKKLHDKRQNLKEKALNKEILADLKHH 149 >gi|50365026|ref|YP_053451.1| SsrA-binding protein [Mesoplasma florum L1] gi|61216502|sp|Q6F1Q6|SSRP_MESFL RecName: Full=SsrA-binding protein gi|50363582|gb|AAT75567.1| tmRNA/ssrA-binding protein [Mesoplasma florum L1] Length = 149 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 58/148 (39%), Positives = 96/148 (64%), Gaps = 2/148 (1%) Query: 10 PKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 + V++ N+KA++NY I+ ++EAGI L G E+KS+R + NI++++ E +L N+ Sbjct: 2 GEHVIALNKKAKFNYEILETWEAGIELYGPEIKSIRNHEANIAEAFILIRKKEAFLINAN 61 Query: 70 IPEYLQANRFN-HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 I +Y AN P R RKLLL K+EI+++ V + +T+VP+++Y AK+++ Sbjct: 62 IKKYDYANFVKGIDPLRTRKLLLHKKEINKILKRVMLEKLTIVPLRLYLKGN-YAKLEIG 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQKHRILR 156 L +GKK +DKRET KKRD +R++ R + Sbjct: 121 LGRGKKIHDKRETIKKRDIERKEMRKYK 148 >gi|317013210|gb|ADU83818.1| SsrA-binding protein [Helicobacter pylori Lithuania75] Length = 152 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 93/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR+RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRDRKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|226355766|ref|YP_002785506.1| SsrA-binding protein [Deinococcus deserti VCD115] gi|226317756|gb|ACO45752.1| putative SsrA-binding protein [Deinococcus deserti VCD115] Length = 143 Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 57/137 (41%), Positives = 85/137 (62%), Gaps = 1/137 (0%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 NR+A Y Y ++ FEAGI LTG+EVKS+R V+ D++A + L YIP Y + Sbjct: 6 TNRRAHYEYELLERFEAGISLTGSEVKSIRAGGVDFRDAFARLHGGNVDLEGLYIPAYKE 65 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 A NH PRR R+LLL++ EI +L + + G+TLVP ++Y + K++LALA+GKK Sbjct: 66 ATYNNHEPRRTRRLLLNRMEILKLKKGLEQKGLTLVPTRLYQKGQ-YFKVELALARGKKL 124 Query: 136 YDKRETEKKRDWDRQKH 152 +DKR + ++ R+ Sbjct: 125 HDKRRADAEKTVRRELR 141 >gi|261840119|gb|ACX99884.1| SsrA-binding protein [Helicobacter pylori 52] Length = 152 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHVYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|188528214|ref|YP_001910901.1| SsrA-binding protein [Helicobacter pylori Shi470] gi|238691953|sp|B2UVI9|SSRP_HELPS RecName: Full=SsrA-binding protein gi|188144454|gb|ACD48871.1| SsrA-binding protein [Helicobacter pylori Shi470] gi|297380703|gb|ADI35590.1| SsrA-binding protein [Helicobacter pylori v225d] Length = 152 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GKK +DKR++ K++ +++ L+ H Sbjct: 122 KGKKLHDKRQSLKEKALNKEILADLKHH 149 >gi|15646053|ref|NP_208235.1| SsrA-binding protein [Helicobacter pylori 26695] gi|108563795|ref|YP_628111.1| SsrA-binding protein [Helicobacter pylori HPAG1] gi|208435312|ref|YP_002266978.1| SsrA-binding protein [Helicobacter pylori G27] gi|210135611|ref|YP_002302050.1| SsrA-binding protein [Helicobacter pylori P12] gi|217033099|ref|ZP_03438563.1| hypothetical protein HPB128_27g6 [Helicobacter pylori B128] gi|298735590|ref|YP_003728113.1| SsrA-binding protein [Helicobacter pylori B8] gi|308183539|ref|YP_003927666.1| SsrA-binding protein [Helicobacter pylori PeCan4] gi|3334331|sp|O25985|SSRP_HELPY RecName: Full=SsrA-binding protein gi|122386159|sp|Q1CRI5|SSRP_HELPH RecName: Full=SsrA-binding protein gi|226706524|sp|B6JNU2|SSRP_HELP2 RecName: Full=SsrA-binding protein gi|226706525|sp|B5Z963|SSRP_HELPG RecName: Full=SsrA-binding protein gi|2314616|gb|AAD08482.1| small protein (smpB) [Helicobacter pylori 26695] gi|107837568|gb|ABF85437.1| SsrA-binding protein [Helicobacter pylori HPAG1] gi|208433241|gb|ACI28112.1| SsrA-binding protein [Helicobacter pylori G27] gi|210133579|gb|ACJ08570.1| ssra-binding protein [Helicobacter pylori P12] gi|216945172|gb|EEC23863.1| hypothetical protein HPB128_27g6 [Helicobacter pylori B128] gi|298354777|emb|CBI65649.1| SsrA-binding protein [Helicobacter pylori B8] gi|308065724|gb|ADO07616.1| SsrA-binding protein [Helicobacter pylori PeCan4] gi|317011575|gb|ADU85322.1| SsrA-binding protein [Helicobacter pylori SouthAfrica7] Length = 152 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|308185207|ref|YP_003929340.1| SsrA-binding protein [Helicobacter pylori SJM180] gi|308061127|gb|ADO03023.1| SsrA-binding protein [Helicobacter pylori SJM180] Length = 152 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILTDLKHH 149 >gi|218508405|ref|ZP_03506283.1| SsrA-binding protein [Rhizobium etli Brasil 5] Length = 114 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 77/113 (68%), Positives = 98/113 (86%) Query: 46 VSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR 105 K NI++SYA+ ++ EIWL NSY+PEYLQANRFNH PRR RKLLLS REIHRL +AV R Sbjct: 1 EGKANIAESYASDDDGEIWLINSYLPEYLQANRFNHEPRRRRKLLLSGREIHRLRSAVNR 60 Query: 106 DGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +GMTLVP+KIYFN +G AK++LALA+GKK +DKRE+EK+RDW+RQK R+L+++ Sbjct: 61 EGMTLVPLKIYFNDRGRAKMELALAKGKKLHDKRESEKERDWNRQKSRLLKDN 113 >gi|172058386|ref|YP_001814846.1| SsrA-binding protein [Exiguobacterium sibiricum 255-15] gi|229559866|sp|B1YL27|SSRP_EXIS2 RecName: Full=SsrA-binding protein gi|171990907|gb|ACB61829.1| SsrA-binding protein [Exiguobacterium sibiricum 255-15] Length = 156 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 81/126 (64%), Gaps = 1/126 (0%) Query: 7 GNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLT 66 KV+++N++A ++Y I + EAG+VLTGTE+KS+R K++I D++ F+ E L Sbjct: 3 KGTSSKVLANNKRASFDYAIEDTIEAGLVLTGTEIKSVRKGKISIGDAFVRFDGGEAILW 62 Query: 67 NSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 NS I + Q NR+NH R RKLLL K++I L +V RDG T+VP+KIY G AK Sbjct: 63 NSNIAHFEQGNRYNHEQLRPRKLLLHKKQIATLMGSVSRDGYTIVPLKIYIK-NGYAKCL 121 Query: 127 LALAQG 132 + L +G Sbjct: 122 IGLGRG 127 >gi|13507813|ref|NP_109762.1| SsrA-binding protein [Mycoplasma pneumoniae M129] gi|2498926|sp|P75043|SSRP_MYCPN RecName: Full=SsrA-binding protein gi|1673735|gb|AAB95729.1| hypothetical protein MPN_074 [Mycoplasma pneumoniae M129] Length = 147 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 93/141 (65%), Gaps = 1/141 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +V+ +N +A+Y+Y+++ + AG+VL G+EVKSL + + ++ ++Y + E+++ + I Sbjct: 2 RVLVNNPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y + FNH +R +KLLL++ EI ++ A +++G++++P+K++F G K+++ LA+ Sbjct: 62 PYAFSGEFNHPFKRVKKLLLNRNEIKQITARQKQEGLSIIPLKVFFK-NGKIKMEIWLAK 120 Query: 132 GKKNYDKRETEKKRDWDRQKH 152 KK +DKRE K + R+ Sbjct: 121 PKKKFDKREAIKSKTIQRELR 141 >gi|315585832|gb|ADU40213.1| SsrA-binding protein [Helicobacter pylori 35A] gi|317181127|dbj|BAJ58913.1| SsrA-binding protein [Helicobacter pylori F32] Length = 152 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 47/148 (31%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + KI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKVKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|15612402|ref|NP_224055.1| SsrA-binding protein [Helicobacter pylori J99] gi|6685994|sp|Q9ZJH2|SSRP_HELPJ RecName: Full=SsrA-binding protein gi|4155947|gb|AAD06913.1| putative [Helicobacter pylori J99] gi|317014856|gb|ADU82292.1| SsrA-binding protein [Helicobacter pylori Gambia94/24] Length = 152 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN K AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQMEASKERLSIVGLKLYFNQKNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|21672526|ref|NP_660593.1| SsrA-binding protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009279|sp|Q8K9R5|SSRP_BUCAP RecName: Full=SsrA-binding protein gi|21623149|gb|AAM67804.1| small protein B [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 163 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 58/149 (38%), Positives = 88/149 (59%), Gaps = 3/149 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 MS K + ++ N+KA YNY I F++G+VL G EVKS+R+ +VNI +SY +N Sbjct: 1 MSYKKKRCLKSSIICKNKKAYYNYFIEEVFQSGLVLMGWEVKSIRLGQVNIIESYINNDN 60 Query: 61 -DEIWLTNSYI-PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFN 118 +E++L NS + P + +N + R RKLLL K EI L + G TLV + +++ Sbjct: 61 LNEMYLYNSIVQPLHTSSNYVSCDSSRKRKLLLHKNEIQYLCNKKNKIGSTLVALSLFW- 119 Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDW 147 K K++ LA+GK DKR +EK+ +W Sbjct: 120 EKSWCKLNFGLAKGKTKIDKRASEKQNEW 148 >gi|317178148|dbj|BAJ55937.1| SsrA-binding protein [Helicobacter pylori F16] Length = 152 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 92/148 (62%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWRIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|307638095|gb|ADN80545.1| tmRNA-binding protein [Helicobacter pylori 908] gi|325996696|gb|ADZ52101.1| SsrA-binding protein [Helicobacter pylori 2018] gi|325998288|gb|ADZ50496.1| ssrA binding protein [Helicobacter pylori 2017] Length = 152 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN K AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQMEASKERLSIVGLKLYFNQKNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILTDLKHH 149 >gi|15616865|ref|NP_240078.1| SsrA-binding protein [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681620|ref|YP_002468006.1| SsrA-binding protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682177|ref|YP_002468561.1| SsrA-binding protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471308|ref|ZP_05635307.1| SsrA-binding protein [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11135214|sp|P57342|SSRP_BUCAI RecName: Full=SsrA-binding protein gi|254778348|sp|B8D947|SSRP_BUCA5 RecName: Full=SsrA-binding protein gi|254778349|sp|B8D7F1|SSRP_BUCAT RecName: Full=SsrA-binding protein gi|25317448|pir||D84959 small protein B [imported] - Buchnera sp. (strain APS) gi|10038929|dbj|BAB12964.1| small protein B [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621910|gb|ACL30066.1| SsrA-binding protein [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624463|gb|ACL30618.1| SsrA-binding protein [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085992|gb|ADP66074.1| SsrA-binding protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087682|gb|ADP67761.1| SsrA-binding protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 162 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 91/145 (62%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA YNY I + F++G+VL G E+KS+R KVNIS+SY + +E++L N I Sbjct: 14 IIINKKAYYNYFIEKVFQSGLVLEGWEIKSIRSGKVNISESYIINDRNEMYLCNCLIEPL 73 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 +NRF+ P R +KLLL K EI L + G T+V + +++ K K++ LA+G Sbjct: 74 QMSSNRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWK-KSWCKLEFGLAKG 132 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 K DKR KKR+W+++K +IL++ Sbjct: 133 KTAQDKRINLKKREWEQEKLKILKK 157 >gi|317179620|dbj|BAJ57408.1| SsrA-binding protein [Helicobacter pylori F30] gi|317182649|dbj|BAJ60433.1| SsrA-binding protein [Helicobacter pylori F57] Length = 152 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|254779955|ref|YP_003058062.1| SsrA-binding protein [Helicobacter pylori B38] gi|254001868|emb|CAX30118.1| SsrA-binding protein [Helicobacter pylori B38] Length = 152 Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats. Identities = 49/148 (33%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN K AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIVGLKLYFNQKNRAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|217033925|ref|ZP_03439349.1| hypothetical protein HP9810_870g57 [Helicobacter pylori 98-10] gi|216943688|gb|EEC23133.1| hypothetical protein HP9810_870g57 [Helicobacter pylori 98-10] Length = 152 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+ L G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLALLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + RR RKLLL K+++ + ++ +++V +K+YFN + AKI +AL Sbjct: 62 YLDTIHAYYKPNERRERKLLLRKKQLLKWQIEASKERLSIVGLKLYFNQRNKAKIQIALV 121 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+ +DKR++ K++ +++ L+ H Sbjct: 122 KGKRLHDKRQSLKEKALNKEILADLKHH 149 >gi|311087148|gb|ADP67228.1| SsrA-binding protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 162 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 59/145 (40%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N+KA YNY I + F++G+VL G E+KS+R KVNIS+SY + +E++L N I + Sbjct: 14 IIINKKAYYNYFIEKVFQSGLVLEGWEIKSIRSGKVNISESYIINDRNEMYLCNCLIEPF 73 Query: 74 LQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 +NRF+ P R +KLLL K EI L + G T+V + +++ K K++ LA+G Sbjct: 74 QMSSNRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWK-KSWCKLEFGLAKG 132 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 K DKR KKR+W+++K +IL++ Sbjct: 133 KTAQDKRINLKKREWEQEKLKILKK 157 >gi|119952839|ref|YP_945048.1| SsrA-binding protein [Borrelia turicatae 91E135] gi|119861610|gb|AAX17378.1| SsrA-binding protein [Borrelia turicatae 91E135] Length = 149 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KAR+NY I GI+L GTEVKS+++ K + +DS+A+ + DE+WL N +I + Sbjct: 4 LLLENKKARFNYFIEDKINCGIILKGTEVKSIKLKKFSFNDSFASIKKDEVWLENLHIAK 63 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLLL+K+EI +L ++G TLVP+ IY L K++L + +G Sbjct: 64 YKEGNIFNHEEIRRRKLLLTKKEIQKLKKFKEKEGYTLVPISIYLK-NSLIKVELGVCKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE K++ + +R ++++ Sbjct: 123 KKLFDKREVLKQKSIKKDLNREIKQY 148 >gi|203283962|ref|YP_002221702.1| SsrA-binding protein [Borrelia duttonii Ly] gi|203287505|ref|YP_002222520.1| SsrA-binding protein [Borrelia recurrentis A1] gi|201083405|gb|ACH92996.1| SsrA-binding protein [Borrelia duttonii Ly] gi|201084725|gb|ACH94299.1| SsrA-binding protein [Borrelia recurrentis A1] Length = 149 Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 94/146 (64%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KAR+NY I GIVL GTEVKS+++ K +DS+A + DEIWL N +I + Sbjct: 4 ILLENKKARFNYFIEDRLSCGIVLKGTEVKSIKLKKFTFNDSFANIKKDEIWLENLHIAK 63 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL++K+EI +L ++G TLVP+ IY L K++L + +G Sbjct: 64 YKEGNIFNHEETRRRKLLITKKEIQKLKKFKEKEGYTLVPISIYLK-NSLIKVELGICKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE K++ + R ++++ Sbjct: 123 KKLFDKREILKQKSIKKDLSREIKQY 148 >gi|197294647|ref|YP_001799188.1| SsrA-binding protein [Candidatus Phytoplasma australiense] gi|171853974|emb|CAM11937.1| SsrA-binding protein [Candidatus Phytoplasma australiense] Length = 176 Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Query: 12 KVVSDNRKARYNYHIVRS-FEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K ++ N+KA +++ + + + AGI L G EVKS+R+ K+++++SYA +N+EI++ N I Sbjct: 28 KTIATNKKAVFDFFLEKKKYHAGIKLLGNEVKSIRLGKISLNNSYAYIKNNEIFIVNLSI 87 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 +Y + + R +KLLL K+EI ++ ++ G +++P+K+YF K L K+++ LA Sbjct: 88 LKYPFSCCMQYDENRTKKLLLRKQEIIQIQNKIKTQGFSVIPLKVYF-EKNLVKVEIVLA 146 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK YDKR + K++ + L++ N Sbjct: 147 KGKKKYDKRNSLKEKAAQLSIQKNLKKIN 175 >gi|224532137|ref|ZP_03672769.1| SsrA-binding protein [Borrelia valaisiana VS116] gi|224511602|gb|EEF82008.1| SsrA-binding protein [Borrelia valaisiana VS116] Length = 150 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 92/143 (64%), Gaps = 1/143 (0%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ +Y + Sbjct: 9 ENKKAKFNYFIEEKISCGIVLQGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVSKYKE 68 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135 N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +GKK Sbjct: 69 GNIFNHDELRPRKLLIRKQELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEIGICKGKKL 127 Query: 136 YDKRETEKKRDWDRQKHRILREH 158 +DKRE K++ ++ R ++ Sbjct: 128 HDKREILKQKSMKKELSREIKYK 150 >gi|187917915|ref|YP_001883478.1| SsrA-binding protein [Borrelia hermsii DAH] gi|119860763|gb|AAX16558.1| SsrA-binding protein [Borrelia hermsii DAH] Length = 149 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 97/146 (66%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KAR+NY I GIVL GTEVKS+++ K + +DS+A+ + DEIWL N +I + Sbjct: 4 LLLENKKARFNYFIEDKISCGIVLKGTEVKSIKLKKFSFNDSFASIKKDEIWLENLHIAK 63 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R+RKLL++K+EI +L ++G TL+P+ IY L K++L + +G Sbjct: 64 YKEGNIFNHEEIRHRKLLITKKEIQKLKKFKEKEGYTLIPISIYLK-NSLIKVELGICKG 122 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK +DKRE K++ + R ++++ Sbjct: 123 KKLFDKREILKQKSIKKDLSREIKQY 148 >gi|223996091|ref|XP_002287719.1| ssrA binding protein [Thalassiosira pseudonana CCMP1335] gi|220976835|gb|EED95162.1| ssrA binding protein [Thalassiosira pseudonana CCMP1335] Length = 143 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 52/143 (36%), Positives = 81/143 (56%), Gaps = 4/143 (2%) Query: 17 NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYAT--FENDEIWLTNSYIPEYL 74 N+ A NY ++ + E GI L GTEVKS+R K+NI D + L N +I ++ Sbjct: 1 NKLAYRNYEVLETLEVGISLVGTEVKSIRDGKMNIRDGFVKANKNGRSCSLMNVHIGKHS 60 Query: 75 QAN-RFNHYPRRNRKLLLSKREIHRLYAAV-RRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 A F H RR R LLL K+E +L R+ GMT+VP+K Y++ + K ++ L +G Sbjct: 61 TAGEFFQHEERRPRDLLLHKQEARKLLQKTDRQPGMTIVPLKAYWSDQNKVKFEIGLCRG 120 Query: 133 KKNYDKRETEKKRDWDRQKHRIL 155 K DKR+ ++R+ R+ +R++ Sbjct: 121 KNVRDKRQDIQEREGKREANRMI 143 >gi|12044911|ref|NP_072721.1| SsrA-binding protein [Mycoplasma genitalium G37] gi|255660188|ref|ZP_05405597.1| SsrA-binding protein [Mycoplasma genitalium G37] gi|1351076|sp|P47305|SSRP_MYCGE RecName: Full=SsrA-binding protein gi|1045733|gb|AAC71276.1| SsrA-binding protein [Mycoplasma genitalium G37] gi|166078888|gb|ABY79506.1| SsrA-binding protein [synthetic Mycoplasma genitalium JCVI-1.0] Length = 145 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 53/144 (36%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N KA+Y+YH++ S+ AGIVL G+EVK+L + + ++ ++Y +N+E++L IP Sbjct: 3 ILVNNPKAKYDYHLMESYCAGIVLKGSEVKALSLGQGSLKEAYVFVKNNELFLEQFTIPP 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A NH R +KLLL+K EI ++ ++ ++++P K++F G K+++ LA+ Sbjct: 63 YSFAGPLNHASDRIKKLLLNKHEIKQIINKKQQQSLSVIPSKVFFR-NGKIKVEIWLAKP 121 Query: 133 KKNYDKRETEKKRDWDRQKHRILR 156 KK +DKRET KK+ R+ R Sbjct: 122 KKKFDKRETIKKKTIRRELEAEYR 145 >gi|294668538|ref|ZP_06733635.1| SsrA-binding protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309501|gb|EFE50744.1| SsrA-binding protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 130 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 45/123 (36%), Positives = 73/123 (59%), Gaps = 2/123 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 +++N+KA ++Y I EAG+VL G EVK++R +V + +SY ++ +L +I Sbjct: 3 IANNKKAFHDYFIEDELEAGLVLDGWEVKAIRAGRVQLKESYIHWKKGAFYLVGCHITAL 62 Query: 74 -LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + P R RKLLL + EI++L V R G TLVP+ +++ +G K+D+ LA+G Sbjct: 63 PTASTHVKPDPVRQRKLLLKQSEINKLIGKVERSGYTLVPLNMHYK-RGYIKMDIGLAKG 121 Query: 133 KKN 135 K N Sbjct: 122 KNN 124 >gi|83319425|ref|YP_424090.1| SsrA-binding protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535971|sp|Q2ST23|SSRP_MYCCT RecName: Full=SsrA-binding protein gi|83283311|gb|ABC01243.1| SsrA-binding protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 148 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 97/145 (66%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N + + Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKK 64 Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+ Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPIKLYFKND-YVKLEIALAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKR+T KKRD +R++ R + Sbjct: 124 GKKLHDKRQTIKKRDTERKELRDYK 148 >gi|313665028|ref|YP_004046899.1| SsrA-binding protein [Mycoplasma leachii PG50] gi|312949229|gb|ADR23825.1| SsrA-binding protein [Mycoplasma leachii PG50] Length = 148 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 97/145 (66%), Gaps = 2/145 (1%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N I + Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNIKK 64 Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+ Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPIKLYFKND-YVKLEIALAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILR 156 GKK +DKR+T KKRD +R++ R + Sbjct: 124 GKKLHDKRQTIKKRDTERKELRDYK 148 >gi|253722947|pdb|1K8H|A Chain A, Nmr Structure Of Small Protein B (Smpb) From Aquifex Aeolicus Length = 133 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 2/126 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72 +++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI Sbjct: 9 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 68 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G Sbjct: 69 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 127 Query: 133 KKNYDK 138 KK YD+ Sbjct: 128 KKLYDR 133 >gi|213586341|ref|ZP_03368167.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 127 Score = 130 bits (327), Expect = 8e-29, Method: Composition-based stats. Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 1/112 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLV 111 E WL + + + P R RKLLL++RE+ LY + R+G T+V Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVV 127 >gi|309800259|ref|ZP_07694435.1| SsrA-binding protein [Streptococcus infantis SK1302] gi|308116112|gb|EFO53612.1| SsrA-binding protein [Streptococcus infantis SK1302] Length = 127 Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 58/126 (46%), Positives = 87/126 (69%), Gaps = 1/126 (0%) Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSK 93 +VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Y + N +N P R RKLLL K Sbjct: 1 MVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPERRRKLLLHK 60 Query: 94 REIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 ++I +L + GMTLVP+K+Y G AK+ L LA+GK +YDKRE+ K+R+ DR R Sbjct: 61 KQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAKGKHDYDKRESIKRREQDRDIAR 119 Query: 154 ILREHN 159 +++ N Sbjct: 120 VMKSVN 125 >gi|225552289|ref|ZP_03773229.1| SsrA-binding protein [Borrelia sp. SV1] gi|225371287|gb|EEH00717.1| SsrA-binding protein [Borrelia sp. SV1] Length = 150 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ + Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKARKLSFNNSFASIKKEELWLENLHVSK 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + +G Sbjct: 66 YKEGNIFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE K++ + R ++ Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150 >gi|256026431|ref|ZP_05440265.1| SsrA-binding protein [Fusobacterium sp. D11] gi|289764443|ref|ZP_06523821.1| small protein B [Fusobacterium sp. D11] gi|289715998|gb|EFD80010.1| small protein B [Fusobacterium sp. D11] Length = 123 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 47/122 (38%), Positives = 81/122 (66%), Gaps = 1/122 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVVP 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + + +N RR RKLLL ++EI +++ V+ G T+VP+ ++ + KG KI +A+A+G Sbjct: 62 WEFGSVYNPEERRVRKLLLHRKEIKKIHEKVKIKGYTIVPLDVHLS-KGYVKIQIAIAKG 120 Query: 133 KK 134 KK Sbjct: 121 KK 122 >gi|51598296|ref|YP_072484.1| SsrA-binding protein [Borrelia garinii PBi] gi|61216478|sp|Q662X9|SSRP_BORGA RecName: Full=SsrA-binding protein gi|51572867|gb|AAU06892.1| small protein [Borrelia garinii PBi] Length = 150 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E WL N ++ + Sbjct: 6 LLLENKKAKFNYFIEEKVSCGIVLKGTEVKSIKAKKLSFNNSFASIKKEEFWLENLHVSK 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G Sbjct: 66 YKEGNIFNHDELRPRKLLIKKQELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE K++ + R ++ Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150 >gi|225549320|ref|ZP_03770293.1| SsrA-binding protein [Borrelia burgdorferi 94a] gi|225370178|gb|EEG99618.1| SsrA-binding protein [Borrelia burgdorferi 94a] Length = 150 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ Sbjct: 5 NLLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKISFNNSFASIKKEELWLENLHVS 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y + N FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + + Sbjct: 65 KYKEGNIFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K++ + R ++ Sbjct: 124 GKKLYDKREILKQKSIKKDLSREIKYK 150 >gi|15594379|ref|NP_212167.1| SsrA-binding protein [Borrelia burgdorferi B31] gi|195941773|ref|ZP_03087155.1| SsrA-binding protein [Borrelia burgdorferi 80a] gi|216264604|ref|ZP_03436596.1| SsrA-binding protein [Borrelia burgdorferi 156a] gi|218249481|ref|YP_002374567.1| SsrA-binding protein [Borrelia burgdorferi ZS7] gi|221217356|ref|ZP_03588827.1| SsrA-binding protein [Borrelia burgdorferi 72a] gi|223889068|ref|ZP_03623657.1| SsrA-binding protein [Borrelia burgdorferi 64b] gi|224532568|ref|ZP_03673191.1| SsrA-binding protein [Borrelia burgdorferi WI91-23] gi|224533885|ref|ZP_03674470.1| SsrA-binding protein [Borrelia burgdorferi CA-11.2a] gi|225549681|ref|ZP_03770646.1| SsrA-binding protein [Borrelia burgdorferi 118a] gi|226322052|ref|ZP_03797577.1| SsrA-binding protein [Borrelia burgdorferi Bol26] gi|3914985|sp|O51064|SSRP_BORBU RecName: Full=SsrA-binding protein gi|2687911|gb|AAC66420.1| small protein (smpB) [Borrelia burgdorferi B31] gi|215981077|gb|EEC21884.1| SsrA-binding protein [Borrelia burgdorferi 156a] gi|218164669|gb|ACK74730.1| SsrA-binding protein [Borrelia burgdorferi ZS7] gi|221192634|gb|EEE18850.1| SsrA-binding protein [Borrelia burgdorferi 72a] gi|223885317|gb|EEF56418.1| SsrA-binding protein [Borrelia burgdorferi 64b] gi|224512511|gb|EEF82889.1| SsrA-binding protein [Borrelia burgdorferi WI91-23] gi|224512888|gb|EEF83254.1| SsrA-binding protein [Borrelia burgdorferi CA-11.2a] gi|225369641|gb|EEG99089.1| SsrA-binding protein [Borrelia burgdorferi 118a] gi|226232642|gb|EEH31396.1| SsrA-binding protein [Borrelia burgdorferi Bol26] gi|312148262|gb|ADQ30921.1| SsrA-binding protein [Borrelia burgdorferi JD1] gi|312149452|gb|ADQ29523.1| SsrA-binding protein [Borrelia burgdorferi N40] Length = 150 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 93/147 (63%), Gaps = 1/147 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ Sbjct: 5 NLLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVS 64 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y + N FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + + Sbjct: 65 KYKEGNIFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK YDKRE K++ + R ++ Sbjct: 124 GKKLYDKREILKQKSIKKDLSREIKYK 150 >gi|75763002|ref|ZP_00742795.1| SsrA-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489503|gb|EAO52926.1| SsrA-binding protein [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 111 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 52/105 (49%), Positives = 74/105 (70%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N +I Sbjct: 7 KVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHNMHIN 66 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIY 116 Y Q NRFNH P R RKLLL K+EI +L A + G LVP++IY Sbjct: 67 TYEQGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIY 111 >gi|332076248|gb|EGI86714.1| ssrA-binding protein [Streptococcus pneumoniae GA41301] Length = 127 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 57/126 (45%), Positives = 87/126 (69%), Gaps = 1/126 (0%) Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSK 93 +VLTGTE+KS+R +++N+ D +A +N E+WL+N +I Y + N +N P R RKLLL K Sbjct: 1 MVLTGTEIKSVRAARINLKDGFAQVKNGEVWLSNVHIAPYEEGNIWNQEPERRRKLLLHK 60 Query: 94 REIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 ++I +L + GMTLVP+K+Y G AK+ L LA+GK +YDKRE+ K+R+ +R R Sbjct: 61 KQIQKLEQETKGTGMTLVPLKVYIKD-GYAKLLLGLAKGKHDYDKRESIKRREQNRDIAR 119 Query: 154 ILREHN 159 +++ N Sbjct: 120 VMKAVN 125 >gi|111114855|ref|YP_709473.1| SsrA-binding protein [Borrelia afzelii PKo] gi|216263779|ref|ZP_03435773.1| SsrA-binding protein [Borrelia afzelii ACA-1] gi|123341447|sp|Q0SPD1|SSRP_BORAP RecName: Full=SsrA-binding protein gi|110890129|gb|ABH01297.1| small protein [Borrelia afzelii PKo] gi|215979823|gb|EEC20645.1| SsrA-binding protein [Borrelia afzelii ACA-1] Length = 150 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 92/146 (63%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A + +E+WL N ++ + Sbjct: 6 LLIENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFAIIKKEELWLENLHVSK 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE K++ + R ++ Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150 >gi|331703807|ref|YP_004400494.1| Ssra binding protein [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256383801|gb|ACU78371.1| SsrA-binding protein [Mycoplasma mycoides subsp. capri str. GM12] gi|256384631|gb|ACU79200.1| SsrA-binding protein [Mycoplasma mycoides subsp. capri str. GM12] gi|296455875|gb|ADH22110.1| SsrA-binding protein [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328802362|emb|CBW54516.1| Ssra binding protein [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 148 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 98/147 (66%), Gaps = 5/147 (3%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N + + Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKK 64 Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+ Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPVKLYFKND-YVKLEIALAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKR+T KKRD +R + L+++ Sbjct: 124 GKKLHDKRQTIKKRDTER---KELKDY 147 >gi|42561376|ref|NP_975827.1| SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|61216535|sp|Q6MSC1|SSRP_MYCMS RecName: Full=SsrA-binding protein gi|42492874|emb|CAE77469.1| SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320454|gb|ADK69097.1| SsrA-binding protein [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 148 Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 55/147 (37%), Positives = 97/147 (65%), Gaps = 5/147 (3%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA +NY I+++++AGIVL G E+KS+R V+I++++ EI++ N + + Sbjct: 5 LIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKK 64 Query: 73 YLQANRFNH-YPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y AN R RKLLL K+EI ++ ++++ +T++P+K+YF K+++ALA+ Sbjct: 65 YQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPVKLYFKND-YVKLEIALAK 123 Query: 132 GKKNYDKRETEKKRDWDRQKHRILREH 158 GKK +DKR+T KKRD +R + L+ + Sbjct: 124 GKKLHDKRQTIKKRDTER---KELKNY 147 >gi|319777707|ref|YP_004137358.1| ssra-binding protein [Mycoplasma fermentans M64] gi|6685989|sp|Q9X498|SSRP_MYCFE RecName: Full=SsrA-binding protein gi|4587472|gb|AAD25739.1|AF100324_11 SmpB protein [Mycoplasma fermentans] gi|238810230|dbj|BAH70020.1| hypothetical protein [Mycoplasma fermentans PG18] gi|318038782|gb|ADV34981.1| SsrA-binding protein [Mycoplasma fermentans M64] Length = 147 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 60/147 (40%), Positives = 90/147 (61%), Gaps = 4/147 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++SDN++ +NY ++ +EAGI L G EVKS R + V++ +SY F EI+L N+ Sbjct: 2 KIISDNKRGMHNYKVIDKYEAGISLMGWEVKSARANTVSLLNSYCFFRKGEIFLCNAQFK 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGM-TLVPMKIYFNAKGLAKIDLALA 130 +Y R+RKLL+ K EI RL + + + G T++P KIYF+ + KI++AL Sbjct: 62 QY---MLVKCDETRDRKLLMHKNEIVRLQSKLHKLGHATIIPSKIYFDNRSRIKIEIALV 118 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILRE 157 QG K DKRE KKRD +R ++L+ Sbjct: 119 QGMKKTDKREEIKKRDNERYIKKVLKN 145 >gi|219685384|ref|ZP_03540203.1| SsrA-binding protein [Borrelia garinii Far04] gi|219673157|gb|EED30177.1| SsrA-binding protein [Borrelia garinii Far04] Length = 150 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ + Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVSK 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE K++ + R ++ Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150 >gi|148927709|ref|ZP_01811153.1| SsrA-binding protein [candidate division TM7 genomosp. GTL1] gi|147886939|gb|EDK72465.1| SsrA-binding protein [candidate division TM7 genomosp. GTL1] Length = 154 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 7/158 (4%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + V+ NR+A+++Y + G+VL G EV++ R V + +Y T NDE Sbjct: 1 MKKKTTTSGAVL--NRRAKFDYELGDELAVGLVLNGPEVRAARDGHVQLKGAYVTIRNDE 58 Query: 63 IWLTNSYI---PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 +WL N+ P + + RKLL +++I L ++ G+T+VP+K++ + Sbjct: 59 LWLNNASFSVKPAQPKRGDARAVDTQPRKLLAHRKQIATLAEQ-KKTGLTIVPLKLFTSG 117 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + K+ +A +GKK YDKRET K+R +R+ R +R Sbjct: 118 RH-IKLLIAAGKGKKKYDKRETLKRRAQEREAQRAMRR 154 >gi|224534844|ref|ZP_03675413.1| SsrA-binding protein [Borrelia spielmanii A14S] gi|224513784|gb|EEF84109.1| SsrA-binding protein [Borrelia spielmanii A14S] Length = 150 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N +I + Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHISK 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE K++ + R ++ Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150 >gi|219684764|ref|ZP_03539706.1| SsrA-binding protein [Borrelia garinii PBr] gi|219671709|gb|EED28764.1| SsrA-binding protein [Borrelia garinii PBr] Length = 150 Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats. Identities = 56/146 (38%), Positives = 93/146 (63%), Gaps = 1/146 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ +N+KA++NY I GIVL GTEVKSL+ K++ ++S+A+ + +E+WL N +I + Sbjct: 6 LLLENKKAKFNYFIEEKISCGIVLKGTEVKSLKAKKMSFNNSFASIKKEELWLENLHISK 65 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y + N FNH R RKLL+ K+E+ RL ++G TL+P+ Y K + K+++ + +G Sbjct: 66 YKEGNIFNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKG 124 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKRE K++ + R ++ Sbjct: 125 KKLYDKREILKQKSIKKDLSREIKYK 150 >gi|45644711|gb|AAS73099.1| predicted SsrA [uncultured marine gamma proteobacterium EBAC20E09] Length = 156 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 60/145 (41%), Positives = 85/145 (58%), Gaps = 1/145 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+ A N+ + SF+AGIVL G EVKSLR SKV++ +SY E WL I Sbjct: 8 LIVKNKNASRNFKLNESFQAGIVLEGWEVKSLRDSKVDVKNSYVNIRKGEAWLIGVKIDI 67 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + N ++RKLLL K+EI ++ G+T V +IY+ L K D+A+ QG Sbjct: 68 PASLQQENIDTTKSRKLLLHKKEIAKIERLKGEKGLTCVLTRIYWKDN-LIKCDIAMGQG 126 Query: 133 KKNYDKRETEKKRDWDRQKHRILRE 157 KK+ D+RE KKRDW+R + RIL+ Sbjct: 127 KKHRDQREDIKKRDWERDQGRILKN 151 >gi|157164927|ref|YP_001467061.1| SsrA-binding protein [Campylobacter concisus 13826] gi|187611473|sp|A7ZE53|SSRP_CAMC1 RecName: Full=SsrA-binding protein gi|112800450|gb|EAT97794.1| SsrA-binding protein [Campylobacter concisus 13826] Length = 151 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 54/148 (36%), Positives = 94/148 (63%), Gaps = 1/148 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K ++ N+KA +++ I+ +FEAGIVL G+EVK+LR + N+ DS+ E++L N++I Sbjct: 3 KDLAKNKKALHDFSILETFEAGIVLKGSEVKALRAGRANLKDSFVRVIKGELFLLNAHIS 62 Query: 72 EYL-QANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + F R RKLL+ +++I +++ V +DG+ LV + +Y + K + K LALA Sbjct: 63 YLETTHSAFRPNERAARKLLMHRKQIDKIFGQVSQDGLALVVLALYLSDKNIVKARLALA 122 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK +DKRET K+R+ D++ ++ + Sbjct: 123 KGKNLHDKRETLKRREADKEARAAIKRY 150 >gi|297184052|gb|ADI20172.1| tmRNA-binding protein [uncultured alpha proteobacterium EB080_L06A09] Length = 123 Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 67/123 (54%), Positives = 89/123 (72%) Query: 37 TGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREI 96 G+EVK+LR+ NI++SY EN E+WL NSY+ Y QA F H RR RKLL+SK++I Sbjct: 1 MGSEVKALRIGSANIAESYVDIENGELWLINSYVSLYTQAQNFGHEERRRRKLLVSKKQI 60 Query: 97 HRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 +L+ A R MT+V +K+YFN KG K+ + A+GKK DKRETEKKRDW+RQK R+LR Sbjct: 61 SKLWQAKGRQAMTIVALKMYFNDKGKVKLLIGTAKGKKQSDKRETEKKRDWNRQKSRLLR 120 Query: 157 EHN 159 +H+ Sbjct: 121 DHS 123 >gi|39938632|ref|NP_950398.1| SsrA-binding protein [Onion yellows phytoplasma OY-M] gi|61216551|sp|Q6YR70|SSRP_ONYPE RecName: Full=SsrA-binding protein gi|39721741|dbj|BAD04231.1| tmRNA-binding protein [Onion yellows phytoplasma OY-M] Length = 152 Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 94/149 (63%), Gaps = 2/149 (1%) Query: 12 KVVSDNRKARYNYHIVRS-FEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + N+KA Y+Y + + ++AGI L G+EVKS+R+ K+N+ +SY +N+E ++ N I Sbjct: 2 KTIITNKKAFYDYSLEKKKYQAGIKLLGSEVKSIRIGKINLLNSYIHIKNEEAFIVNMTI 61 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 +Y + + R +KLLL K EI ++ ++ + ++++P+K+YFN K L K+++AL+ Sbjct: 62 LKYPFSCCLAYDENRTKKLLLQKHEIIQIKNKIKTEKLSVIPLKVYFN-KNLVKLEIALS 120 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKR K D + + L+ N Sbjct: 121 KGKKQHDKRNALKDFDAKLRIQKTLKNFN 149 >gi|66361446|pdb|1ZC8|K Chain K, Coordinates Of Tmrna, Smpb, Ef-Tu And H44 Fitted Into Cryo- Em Map Of The 70s Ribosome And Tmrna Complex Length = 130 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 59/123 (47%), Positives = 80/123 (65%), Gaps = 2/123 (1%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRV-SKVNISDSYATFENDEIWLTNSYIPE 72 +++N++A+ Y I+ ++EAGIVL G+EVKSLR V+ DS+ EN E WL N YI Sbjct: 9 IAENKEAKAKYDILETYEAGIVLKGSEVKSLREKGTVSFKDSFVRIENGEAWLYNLYIAP 68 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y A NH P R RKLLL KREI RLY V+ G T++P+K+Y+ K+ +ALA+G Sbjct: 69 YKHATIENHDPLRKRKLLLHKREIMRLYGKVQEKGYTIIPLKLYWK-NNKVKVLIALAKG 127 Query: 133 KKN 135 KK Sbjct: 128 KKL 130 >gi|268610170|ref|ZP_06143897.1| SsrA-binding protein [Ruminococcus flavefaciens FD-1] Length = 124 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 50/124 (40%), Positives = 78/124 (62%), Gaps = 1/124 (0%) Query: 36 LTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKRE 95 + GTE+KS+R VN+ DS+ + + E+++ +I Y + N FN P R RKLL+ KRE Sbjct: 1 MVGTELKSIRQGGVNLKDSWCSIDGGELFVRGMHISPYEKGNIFNRDPLRKRKLLMHKRE 60 Query: 96 IHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 I++L+ V++DG++L+P+ IYF K+ + L +GKK YDKR KRD R+ R + Sbjct: 61 INKLFGTVKQDGLSLIPLSIYFKDS-RVKMQVGLCKGKKLYDKRADAAKRDAKREIDRNI 119 Query: 156 REHN 159 + N Sbjct: 120 KSRN 123 >gi|27904731|ref|NP_777857.1| SsrA-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396887|sp|Q89AM9|SSRP_BUCBP RecName: Full=SsrA-binding protein gi|27904128|gb|AAO26962.1| SsrA-binding protein [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 158 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 2/156 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K N + NRKA+Y++ I +FEAGIVL G EVKS+R K+NIS+SY + +N E Sbjct: 1 MKRNSNRKPNEICINRKAKYSFSIKETFEAGIVLLGWEVKSVRCGKINISNSYISLKNGE 60 Query: 63 IWLTNSYIPEYLQAN-RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 ++L NS ++N + R +K+LL KREI LY+ + + +T++ + I+F K Sbjct: 61 MYLVNSQFDPISKSNLYITYECNRIKKILLRKREITYLYSKLYKSHLTIIVLSIFFK-KQ 119 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GK DKRE +K +W + ++R ++ Sbjct: 120 WCKVKIGIAKGKTIKDKREHKKLSEWKKTQNRFVKR 155 >gi|85057854|ref|YP_456770.1| SsrA-binding protein [Aster yellows witches'-broom phytoplasma AYWB] gi|84789959|gb|ABC65691.1| tmRNA-binding protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 152 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 95/149 (63%), Gaps = 2/149 (1%) Query: 12 KVVSDNRKARYNYHIVRS-FEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + N+KA Y+Y + + ++AGI L G+EVKS+R+ K+N+ +SY +N+E+++ N I Sbjct: 2 KTIITNKKAFYDYSLEKKKYQAGIKLLGSEVKSIRIGKINLLNSYIHIKNEEVFIVNMTI 61 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 +Y + + R +KLLL K EI ++ ++ + ++++P+K+YFN K L K+++ALA Sbjct: 62 LKYPFSCCLVYDENRTKKLLLQKYEIIQIQKKIKTEKLSVIPLKVYFN-KNLVKLEIALA 120 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREHN 159 +GKK +DKR K + + + L+ N Sbjct: 121 KGKKKHDKRNALKDFNAKLRIQKTLKNFN 149 >gi|151515407|gb|ABS12406.1| SmpB [Mycobacterium chitae] Length = 103 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 75/104 (72%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+VL GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILDTFEAGVVLQGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHTPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFSE-GKVKVELAL 103 >gi|151515403|gb|ABS12404.1| SmpB [Mycobacterium pyrenivorans] Length = 103 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLRDGQASLADAFATIDDGEIWLRNLHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L VR +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRREIDNLVGKVRDGNLTLVPLSLYFTG-GRVKVEFAL 103 >gi|151515463|gb|ABS12434.1| SmpB [Mycobacterium aichiense] gi|151515465|gb|ABS12435.1| SmpB [Mycobacterium petroleophilum] gi|151515467|gb|ABS12436.1| SmpB [Mycobacterium rhodesiae] Length = 103 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+VL GTEVKSLR +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILDTYEAGVVLQGTEVKSLREGHASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRSQIDNLVGKIRDGNLTLVPLSLYFSD-GKVKVEFAL 103 >gi|226321137|ref|ZP_03796678.1| SsrA-binding protein [Borrelia burgdorferi 29805] gi|226233429|gb|EEH32169.1| SsrA-binding protein [Borrelia burgdorferi 29805] Length = 152 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 54/141 (38%), Positives = 89/141 (63%), Gaps = 1/141 (0%) Query: 18 RKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQAN 77 +KA++NY I GIVL GTEVKS++ K++ ++S+A+ + +E+WL N ++ +Y + N Sbjct: 13 KKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFASIKKEELWLENLHVSKYKEGN 72 Query: 78 RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYD 137 FNH R RKLL+ KRE+ RL ++G TL+P+ Y K + K+++ + +GKK YD Sbjct: 73 IFNHDELRPRKLLIKKRELQRLKKFKEKEGYTLIPISFYLK-KSIIKVEVGICKGKKLYD 131 Query: 138 KRETEKKRDWDRQKHRILREH 158 KRE K++ + R ++ Sbjct: 132 KREILKQKSIKKDLSREIKYK 152 >gi|151515461|gb|ABS12433.1| SmpB [Mycobacterium sphagni] Length = 103 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+VL GTEVKSLR +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILDTYEAGVVLQGTEVKSLREGHASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRSQIDTLVGKIRDGNLTLVPLSLYFSE-GKVKVEFAL 103 >gi|151515377|gb|ABS12391.1| SmpB [Mycobacterium pulveris] Length = 103 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGI L GTEVKSLR +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILETFEAGIQLVGTEVKSLREGHASLTDAFATIDDGEVWLRNVHIPEYHHGSWTNHPPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI RL +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRREIDRLIGRIRDGNLTLVPLSLYFSD-GKVKVEFAL 103 >gi|33519995|ref|NP_878827.1| SsrA-binding protein [Candidatus Blochmannia floridanus] gi|33504341|emb|CAD83234.1| tmRNA-binding protein [Candidatus Blochmannia floridanus] Length = 148 Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 1/146 (0%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + N++ + Y I + E G+VL G EVKS+R K+ I +SY + + E ++ N+ Sbjct: 3 IIQNKRVHHKYFIEKEIETGLVLLGWEVKSIRSRKITIENSYVSLRDQEAYMCNANFQIQ 62 Query: 74 LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGK 133 N P R RKLLL K+E+ L + + T++ + +++ K ++ +A+GK Sbjct: 63 TNMNVSTPDPTRMRKLLLKKQELSFLTEIMHKKSYTIIILNLFWK-NSWIKANIGIAKGK 121 Query: 134 KNYDKRETEKKRDWDRQKHRILREHN 159 K YDKR W ++ I++ N Sbjct: 122 KKYDKRHIVNTHQWKLEQKHIIKCVN 147 >gi|15828823|ref|NP_326183.1| SsrA-binding protein [Mycoplasma pulmonis UAB CTIP] gi|22096173|sp|Q98QK9|SSRP_MYCPU RecName: Full=SsrA-binding protein gi|14089766|emb|CAC13525.1| SMALL PROTEIN B [Mycoplasma pulmonis] Length = 145 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 90/144 (62%), Gaps = 3/144 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N++ +Y I+ EAGIVL G EVKS+R S VN+ SY F+ +E++L NSYI Sbjct: 3 KLITKNKQVFRDYEIIDKLEAGIVLQGWEVKSIRASDVNLKGSYCVFKANELYLINSYIG 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 Y+ R++RKLLL K ++ RL V +++VP+ +Y+N K K ++AL + Sbjct: 63 LYMAVK---GDERQSRKLLLHKNQLRRLKQKVESQSLSIVPLSLYWNKKSKVKAEIALVR 119 Query: 132 GKKNYDKRETEKKRDWDRQKHRIL 155 G K +DKRE KK + +++ +++ Sbjct: 120 GLKKHDKREKLKKEETNKKLKKLI 143 >gi|151515413|gb|ABS12409.1| SmpB [Mycobacterium psychrotolerans] Length = 103 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRREIDTLVGKTRDGNLTLVPLSLYFTG-GRVKVEFAL 103 >gi|158562265|gb|ABW74060.1| smpB [Mycobacterium monacense] Length = 103 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLRNLHIPEYQHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|151515387|gb|ABS12396.1| SmpB [Mycobacterium gilvum] Length = 103 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILETYEAGVALVGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLL+ +REI L +R +TLVP+ +YF G K++LAL Sbjct: 61 NRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVELAL 103 >gi|151515411|gb|ABS12408.1| SmpB [Mycobacterium obuense] Length = 103 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + EI L R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRNEIDTLVGKTRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|151515417|gb|ABS12411.1| SmpB [Mycobacterium chubuense] Length = 103 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRREIDTLVGKTRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|151515409|gb|ABS12407.1| SmpB [Mycobacterium duvalii] Length = 103 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILDTYEAGIALVGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|151515405|gb|ABS12405.1| SmpB [Mycobacterium aurum] Length = 103 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + EI L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRTEIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|209973669|gb|ACJ03966.1| SmpB [Mycobacterium setense] Length = 105 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Query: 21 RYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFN 80 R+NY I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY N Sbjct: 1 RHNYMILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTN 60 Query: 81 HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 H PRRNRKLLL + +I L +R +TLVP+ +YF+ G K++ Sbjct: 61 HAPRRNRKLLLHRSQIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVE 105 >gi|151515379|gb|ABS12392.1| SmpB [Mycobacterium thermoresistibile] Length = 103 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILDTYEAGIALVGTEVKSLREGHASLTDAFATIDDGEVWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I +L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRRQIDQLTGKLRDGNLTLVPLSLYFSE-GKVKVEFAL 103 >gi|151515459|gb|ABS12432.1| SmpB [Mycobacterium confluentis] Length = 103 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+VL GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILDTYEAGVVLQGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYFHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L VR +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRKQIDNLVGKVRDGNLTLVPLSLYFSE-GKVKVEFAL 103 >gi|151515419|gb|ABS12412.1| SmpB [Mycobacterium austroafricanum] gi|151515421|gb|ABS12413.1| SmpB [Mycobacterium vanbaalenii PYR-1] Length = 103 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLL+ +REI L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLMHRREIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|151515473|gb|ABS12439.1| SmpB [Mycobacterium hiberniae] Length = 103 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+ L GTEVKSLR + ++ D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILDVYEAGVALVGTEVKSLRAGQASLVDAFATVDDGEVWLRNMHIPEYQHGTWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +R+I L +R +TLVP+ +YFN G K++ AL Sbjct: 61 TRKLLLHRRQIDMLIGKIRDGNLTLVPLSVYFNE-GKVKVEFAL 103 >gi|151515451|gb|ABS12428.1| SmpB [Mycobacterium vaccae] Length = 103 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILETFEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ +YF G K++LAL Sbjct: 61 NRKLLLHRKQIDNLVGKIRDGNLTLVPLSLYFTG-GKVKVELAL 103 >gi|151515373|gb|ABS12389.1| SmpB [Mycobacterium novocastrense] Length = 103 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILETFEAGIQLVGTEVKSLRDGQASLADAFATVDDGEVWLRNLHIPEYHHGSWTNHVPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I +L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDQLIGRIRDGNLTLVPLSLYFTD-GKVKVEFAL 103 >gi|151515385|gb|ABS12395.1| SmpB [Mycobacterium agri] Length = 103 Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILETFEAGIALVGTEVKSLREGQASLTDAFATVDDGEVWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRKQIDMLTGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103 >gi|151515375|gb|ABS12390.1| SmpB [Mycobacterium elephantis] Length = 103 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILETFEAGIQLVGTEVKSLREGQASLADAFATVDDGEVWLRNLHIPEYHHGSWTNHSPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL ++EI RL +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRKEIDRLIGRIRDGNLTLVPLSLYFSD-GKVKVEFAL 103 >gi|167947342|ref|ZP_02534416.1| SsrA-binding protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 148 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 1/106 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+KA+++Y I +EAG+ L G EVKSLR ++N++++Y E +L + I Sbjct: 16 TIALNKKAKHDYFIEERYEAGVALEGWEVKSLRAGRINLTEAYVIINKGEAYLFGANISP 75 Query: 73 YLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYF 117 ++ P RNRKLLL + E+++L V R G TLVP +Y Sbjct: 76 LPTVSSHIQPNPTRNRKLLLHRTELNKLIGLVERKGFTLVPTAMYL 121 >gi|151515391|gb|ABS12398.1| SmpB [Mycobacterium manitobense] Length = 103 Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILETYEAGVALMGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGSWTNHTPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRSQIDTLIGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103 >gi|151515299|gb|ABS12352.1| SmpB [Mycobacterium florentinum] Length = 103 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ SFEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILESFEAGVALVGTEVKSLRQGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRRQIDTLIGKIRDGNLTLVPLSLYFSE-GKVKVELAL 103 >gi|151515363|gb|ABS12384.1| SmpB [Mycobacterium murale] gi|151515365|gb|ABS12385.1| SmpB [Mycobacterium tokaiense] Length = 103 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FE G+VL GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH RR Sbjct: 1 ILDTFECGVVLQGTEVKSLREGQASLADAFATVDDGEVWLRNLHIPEYHLGTWTNHATRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLL+ + EI L +R +TLVP+ IYF G K++ AL Sbjct: 61 NRKLLMHRSEIDNLTGKIRDGNLTLVPLSIYFLD-GKVKVEFAL 103 >gi|54020341|ref|YP_115624.1| SsrA-binding protein [Mycoplasma hyopneumoniae 232] gi|61216452|sp|Q601U1|SSRP_MYCH2 RecName: Full=SsrA-binding protein gi|53987514|gb|AAV27715.1| SsrA-binding protein [Mycoplasma hyopneumoniae 232] Length = 145 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 4/146 (2%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N++A ++Y I+ F AGIVL G EVKS++ +++ ++ F+ E++L+N+ I E Sbjct: 3 ILIKNKRANFDYEIIDRFTAGIVLLGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y R+RKLL+ K E+ ++ + ++P+ I + K+++ALA+G Sbjct: 63 YK---GSRGQTDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKG 118 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K DKR K+RD R+ + L+ + Sbjct: 119 KTKLDKRNLIKERDQKREAAKFLKNY 144 >gi|151515423|gb|ABS12414.1| SmpB [Mycobacterium poriferae] Length = 103 Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLVGRIRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|158562263|gb|ABW74059.1| smpB [Mycobacterium arupense] Length = 103 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+VL GTEVKSLR + ++ D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILDVYEAGVVLVGTEVKSLRAGQASLVDAFATVDDGEVWLRNMHIPEYHHGTWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +R+I L +R +TLVP+ +YF G K++ AL Sbjct: 61 TRKLLLHRRQIDMLIGKIRDGNLTLVPLSVYFFE-GKVKVEFAL 103 >gi|71893617|ref|YP_279063.1| SsrA-binding protein [Mycoplasma hyopneumoniae J] gi|71851744|gb|AAZ44352.1| SsrA-binding protein [Mycoplasma hyopneumoniae J] Length = 145 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 4/146 (2%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N++A ++Y I+ F AGIVL G EVKS++ +++ ++ F+ E++L+N+ I E Sbjct: 3 ILIKNKRANFDYEIIDRFTAGIVLFGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y R+RKLL+ K E+ ++ + ++P+ I + K+++ALA+G Sbjct: 63 YK---GSRGQTDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKG 118 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K DKR K+RD R+ + L+ + Sbjct: 119 KTKLDKRNLIKERDQKREAAKFLKNY 144 >gi|151515383|gb|ABS12394.1| SmpB [Mycobacterium phlei] Length = 103 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILDTYEAGIQLVGTEVKSLREGQASLADAFATIDDGEVWLRNVHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I +L VR +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRKQIDQLMGRVRDGNLTLVPLSLYFKD-GKVKVEFAL 103 >gi|72080608|ref|YP_287666.1| SsrA-binding protein [Mycoplasma hyopneumoniae 7448] gi|71913732|gb|AAZ53643.1| SsrA-binding protein [Mycoplasma hyopneumoniae 7448] Length = 145 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 45/146 (30%), Positives = 83/146 (56%), Gaps = 4/146 (2%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N++A ++Y I+ F AGIVL G EVKS++ +++ ++ F+ E++L+N+ I E Sbjct: 3 ILIKNKRANFDYEIIDKFTAGIVLFGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 Y R+RKLL+ K E+ ++ + ++P+ I + K+++ALA+G Sbjct: 63 YK---GSRGQTDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKG 118 Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 K DKR K+RD R+ + L+ + Sbjct: 119 KTKLDKRNLIKERDQKREVAKFLKNY 144 >gi|151515301|gb|ABS12353.1| SmpB [Mycobacterium simiae] Length = 103 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 IV SFEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IVESFEAGVALVGTEVKSLRQGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRRQIDTLIGKIRDGNLTLVPLSLYFSE-GKVKVELAL 103 >gi|151515427|gb|ABS12416.1| SmpB [Mycobacterium parafortuitum] Length = 103 Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+ L GTEVKSLR +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILETYEAGVALMGTEVKSLRDGTASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRKQIDNLVGRIRDGNLTLVPLSLYFTG-GKVKVEFAL 103 >gi|151515431|gb|ABS12418.1| SmpB [Mycobacterium fortuitum subsp. acetamidolyticum] gi|151515433|gb|ABS12419.1| SmpB [Mycobacterium fortuitum subsp. fortuitum] Length = 103 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSMYFSD-GRVKVEFAL 103 >gi|151515357|gb|ABS12381.1| SmpB [Mycobacterium tusciae] Length = 103 Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 ++ +FEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 VLETFEAGVQLVGTEVKSLRDGQASLADAFATIDDGEVWLRNLHIPEYHHGSWTNHTPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R +TLVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRSQIDNLIGRIRDGNLTLVPLSLYFSD-GKVKVELAL 103 >gi|151515295|gb|ABS12350.1| SmpB [Mycobacterium branderi] Length = 103 Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats. Identities = 53/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAGIVL GTEVKSLR K ++ D+YAT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILEVFEAGIVLLGTEVKSLREGKASLVDAYATVDDGEVWLRNLHIPEYHHGTWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +R+I L +R + LVP+ +YF+ G K++LAL Sbjct: 61 TRKLLLHRRQIDGLIGKIRDGNLALVPLSLYFSE-GKVKVELAL 103 >gi|151515401|gb|ABS12403.1| SmpB [Mycobacterium cosmeticum] Length = 103 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+VL GTEVKSLR + ++ D++AT ++ E+WL N +I EY NH PRR Sbjct: 1 ILETFEAGVVLVGTEVKSLREGQASLVDAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103 >gi|151515355|gb|ABS12380.1| SmpB [Mycobacterium triviale] Length = 103 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 47/104 (45%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILEVFEAGVALVGTEVKSLRQGHASLVDAFATVDDGEVWLRNMHIPEYHHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L ++ +TLVP+ +Y ++ G K++ AL Sbjct: 61 NRKLLLHRSQIDTLVGKIKDGNLTLVPLSVYLSS-GKVKVEFAL 103 >gi|151515359|gb|ABS12382.1| SmpB [Mycobacterium hodleri] Length = 103 Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADSFATVDDGEVWLRNLHIPEYHHGSWTNHSPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R ++LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRGQIDNLIGKIRDGNLSLVPLSLYFTD-GKVKVEFAL 103 >gi|151515381|gb|ABS12393.1| SmpB [Mycobacterium hassiacum] Length = 103 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILDTYEAGIQLVGTEVKSLREGQASLADAFATIDDGEVWLRNVHIPEYHHGTWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +++I +L VR TLVP+ +YF G K++LAL Sbjct: 61 KRKLLLHRKQIDQLMGRVRDGNCTLVPLSMYFTD-GKVKVELAL 103 >gi|151515429|gb|ABS12417.1| SmpB [Mycobacterium alvei] Length = 103 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRSQIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103 >gi|151515399|gb|ABS12402.1| SmpB [Mycobacterium neoaurum] Length = 103 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+VL GTEVKSLR + ++ D++AT ++ EIWL N +I EY + NH PRR Sbjct: 1 ILETFEAGVVLVGTEVKSLREGQASLVDAFATVDDGEIWLRNLHIAEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLTLVPLSLYFVD-GKVKVEFAL 103 >gi|151515369|gb|ABS12387.1| SmpB [Mycobacterium brumae] Length = 103 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+VL GTEVK+LR + ++D++AT ++ E WL N +IPEY NH PRR Sbjct: 1 ILDTYEAGLVLQGTEVKALREGQALLADAFATIDDGEAWLRNLHIPEYNLGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL ++EI L +R +TLVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRKEIDNLVGKIRDGNLTLVPLSLYFSD-GRVKVELAL 103 >gi|151515445|gb|ABS12425.1| SmpB [Mycobacterium boenickei] gi|151515447|gb|ABS12426.1| SmpB [Mycobacterium porcinum] gi|151515449|gb|ABS12427.1| SmpB [Mycobacterium neworleansense] Length = 103 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103 >gi|151515397|gb|ABS12401.1| SmpB [Mycobacterium frederiksbergense] Length = 103 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAGIVL GTEVKSLR + +++D++AT ++ E+WL N +I EY + NH PRR Sbjct: 1 ILDVYEAGIVLVGTEVKSLREGQASLADAFATVDDGEVWLRNLHIAEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLL+ + +I L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLMHRSQIDNLVGKIRDGNLTLVPLSLYFVD-GKVKVEFAL 103 >gi|151515371|gb|ABS12388.1| SmpB [Mycobacterium fallax] Length = 103 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGIVL GTEVK+LR + +++D++AT ++ EIWL + +IPEY NH PRR Sbjct: 1 ILDTYEAGIVLQGTEVKALREGQASLADAFATVDDGEIWLRSLHIPEYHLGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L VR +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRKQIDALAGKVRDGNLTLVPLSLYFSD-GRVKVEFAL 103 >gi|294155380|ref|YP_003559764.1| SsrA RNA (tmRNA)-binding protein [Mycoplasma crocodyli MP145] gi|291600197|gb|ADE19693.1| SsrA RNA (tmRNA)-binding protein [Mycoplasma crocodyli MP145] Length = 146 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 83/142 (58%), Gaps = 4/142 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++DN+K R NY I +EAGIVL G EVKS R +KV++++SY + +++WL S+ Sbjct: 2 KIIADNKKERRNYEIFELYEAGIVLEGWEVKSARANKVSLNNSYCSINKEQMWLNESHFS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y R RKLLL K EI ++ +T++P KIYF K+++ALA+ Sbjct: 62 QY---MLVKCNEVRERKLLLHKEEIKKIKFKCESKQLTIIPTKIYFKKD-KIKVEIALAK 117 Query: 132 GKKNYDKRETEKKRDWDRQKHR 153 G K +DKRE K + + + Sbjct: 118 GLKKFDKREKIAKEEVQKNIKK 139 >gi|151515425|gb|ABS12415.1| SmpB [Mycobacterium brisbanense] Length = 103 Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+ L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRREIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103 >gi|151515321|gb|ABS12363.1| SmpB [Mycobacterium bohemicum] Length = 103 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 74/104 (71%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR+ + +++D++AT ++ E+WL N ++PEY+Q + NH PRR Sbjct: 1 ILEVFEAGVALQGTEVKSLRLGQASLADAFATVDDGEVWLHNMHVPEYVQGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +++I RL +R + LVPM +YF+ G K++ AL Sbjct: 61 KRKLLLHRQQIDRLVGKIRDGNLALVPMSVYFSD-GRVKVEFAL 103 >gi|151515297|gb|ABS12351.1| SmpB [Mycobacterium celatum] Length = 103 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FE GIVL GTEVKSLR K ++ D+YAT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILEVFETGIVLLGTEVKSLREGKASLVDAYATVDDGEVWLRNLHIPEYHHGTWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +R+I L +R + LVP+ +YF+ G K++LAL Sbjct: 61 TRKLLLHRRQIDGLIGKIRDGNLALVPLSLYFSE-GKVKVELAL 103 >gi|151515389|gb|ABS12397.1| SmpB [Mycobacterium madagascariense] Length = 103 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGI L GTEVK+LR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILDTFEAGIALMGTEVKALRDGQASLADAFATVDDGEIWLRNVHIPEYHHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L ++ ++LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRSQIDTLIGKIQDGNLSLVPLSLYFLD-GKVKVEFAL 103 >gi|151515453|gb|ABS12429.1| SmpB [Mycobacterium goodii] Length = 103 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGIVL GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIVLMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ IYF G K++ AL Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD-GKVKVEFAL 103 >gi|151515393|gb|ABS12399.1| SmpB [Mycobacterium fluoranthenivorans] gi|151515395|gb|ABS12400.1| SmpB [Mycobacterium hackensackense] Length = 103 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+VL GTEVKSLR + ++ D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDVYEAGVVLVGTEVKSLREGQASLVDAFATIDDGEIWLRNLHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L +R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRREIDNLVGKIRDGNLTLVPLSLYFTD-GKVKVEFAL 103 >gi|151515443|gb|ABS12424.1| SmpB [Mycobacterium septicum] Length = 103 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL ++EI L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRKEIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103 >gi|151515455|gb|ABS12430.1| SmpB [Mycobacterium piscinum] gi|151515457|gb|ABS12431.1| SmpB [Mycobacterium smegmatis] Length = 103 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAGIVL GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILETFEAGIVLMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ IYF G K++ AL Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD-GKVKVEFAL 103 >gi|151515477|gb|ABS12441.1| SmpB [Mycobacterium lacus] Length = 103 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 IV FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 IVEVFEAGVALLGTEVKSLREGHASLVDAFATVDDGEIWLRNMHIPEYQHGGWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R + LVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRRQIDTLIGKIRDGNLALVPLSLYFSD-GKVKVELAL 103 >gi|151515469|gb|ABS12437.1| SmpB [Mycobacterium haemophilum] Length = 103 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 IV FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IVELFEAGVALLGTEVKSLREGHASLVDAFATVDDGEVWLRNMHIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R + LVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFSD-GKVKVEFAL 103 >gi|151515331|gb|ABS12368.1| SmpB [Mycobacterium saskatchewanense] Length = 103 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I +EAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 IEEVYEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNMYIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R +TLVPM +YF G K++ AL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLTLVPMSLYFTE-GKVKVEFAL 103 >gi|194246722|ref|YP_002004361.1| SsrA-binding protein [Candidatus Phytoplasma mali] gi|193807079|emb|CAP18515.1| SsrA-binding protein [Candidatus Phytoplasma mali] Length = 151 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 91/146 (62%), Gaps = 1/146 (0%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 K+++ N+KA Y+Y + + + AGI L G E+KS+R+ KVNI +++ +N+EI++ N Sbjct: 2 KKNFKIITVNKKAEYDYFLEKKYYAGIKLLGCEIKSIRLGKVNIQNAHIFIKNNEIFIMN 61 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 I +Y + +R +KLLL+K+EI ++ ++ +T +P+K+Y K LAK+++ Sbjct: 62 MLIDKYKLSCDLFFQEKREKKLLLNKKEIIQIKNKMKIQSLTTIPVKLYL-DKHLAKLEI 120 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHR 153 ALA+GKK YDKR K++ + Sbjct: 121 ALAKGKKKYDKRNDLKEKTIKLDLKK 146 >gi|151515437|gb|ABS12421.1| SmpB [Mycobacterium farcinogenes] gi|151515439|gb|ABS12422.1| SmpB [Mycobacterium senegalense] Length = 103 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSMYFSG-GKVKVEFAL 103 >gi|47459099|ref|YP_015961.1| SsrA-binding protein [Mycoplasma mobile 163K] gi|61216514|sp|Q6KI26|SSRP_MYCMO RecName: Full=SsrA-binding protein gi|47458428|gb|AAT27750.1| ssra-binding protein [Mycoplasma mobile 163K] Length = 142 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 48/143 (33%), Positives = 86/143 (60%), Gaps = 4/143 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++ N+ A +NY I+ ++AG++L G EVKS+R +KV + ++ TF+NDE ++TN +I Sbjct: 2 KIIIKNKDAFFNYEILEKYKAGLILKGWEVKSIRENKVQLKGAFITFKNDEAYITNMHIS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y+ PR KLLL+K EI + R+ + ++P+ +++ K+++ALA+ Sbjct: 62 QYMSVKGNELEPR---KLLLNKHEIRHIQDKKNRNSLAVIPLNLFW-DNNYIKLEIALAK 117 Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154 GK DKR ++D + +I Sbjct: 118 GKTKADKRHRILEKDVRKHLKKI 140 >gi|151515333|gb|ABS12369.1| SmpB [Mycobacterium heidelbergense] Length = 103 Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IIELFEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + LVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103 >gi|294660459|ref|NP_853225.2| SsrA-binding protein [Mycoplasma gallisepticum str. R(low)] gi|298286860|sp|Q7NB37|SSRP_MYCGA RecName: Full=SsrA-binding protein gi|284812119|gb|AAP56793.2| SsrA-binding protein [Mycoplasma gallisepticum str. R(low)] gi|284930710|gb|ADC30649.1| SsrA-binding protein [Mycoplasma gallisepticum str. R(high)] Length = 143 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 1/143 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +++ +N+KA+YNY ++ +EAGI L+G EVKSL + + DSY +E +L N IP Sbjct: 2 RLLVNNKKAKYNYELLDKYEAGISLSGNEVKSLALHHGKLDDSYVIIRKNEAYLLNLLIP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y R RKLLL K EI ++ ++ + ++P +IYF K+ + LA+ Sbjct: 62 KYKFDTSKVLNETRTRKLLLHKSEILKIDLIKKQHSLVIIPYQIYF-VNNKIKVSIYLAR 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154 KK YDKR+T K+R+ +++ + Sbjct: 121 PKKRYDKRQTIKEREINKKIRKY 143 >gi|151515347|gb|ABS12376.1| SmpB [Mycobacterium conspicuum] Length = 103 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +E G+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILEQYECGVALVGTEVKSLREGHASLVDAFATVDDGEIWLRNLHIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R + LVP+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRSQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVELAL 103 >gi|151515303|gb|ABS12354.1| SmpB [Mycobacterium lentiflavum] Length = 103 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I FEAG+ L GTEVKSLR+ + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IEELFEAGVALVGTEVKSLRLGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +R+I L +R + LVP+ +YF+ G K++ AL Sbjct: 61 TRKLLLHRRQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103 >gi|151515415|gb|ABS12410.1| SmpB [Mycobacterium chlorophenolicum] Length = 100 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 49/101 (48%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH PRR Sbjct: 1 ILETFEAGVALMGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 NRKLL+ +REI L R +TLVP+ +YF G K++ Sbjct: 61 NRKLLMHRREIDTLVGKTRDGNLTLVPLSLYFTG-GKVKVE 100 >gi|284931385|gb|ADC31323.1| SsrA-binding protein [Mycoplasma gallisepticum str. F] Length = 143 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 1/143 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 +++ +N+KA+YNY ++ +EAGI L+G EVKSL + + DSY +E +L N IP Sbjct: 2 RLLVNNKKAKYNYELLDKYEAGISLSGNEVKSLALHHGKLDDSYVIIRKNEAYLLNLLIP 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y R RKLLL K EI ++ ++ + ++P +IYF KI + LA+ Sbjct: 62 KYKFDTSKVLNETRTRKLLLHKSEILKIDLIKKQQSLVIIPYQIYF-VNNKIKISIYLAR 120 Query: 132 GKKNYDKRETEKKRDWDRQKHRI 154 KK YDKR+T K+R+ +++ + Sbjct: 121 PKKRYDKRQTIKEREINKKIRKY 143 >gi|151515441|gb|ABS12423.1| SmpB [Mycobacterium peregrinum] Length = 103 Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R +TLVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSMYFSD-GKVKVEFAL 103 >gi|151515367|gb|ABS12386.1| SmpB [Mycobacterium komossense] Length = 103 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+ L GTEVKSLR + +++D++AT ++ EIWL N +IPEY NH RR Sbjct: 1 ILDVYEAGVALVGTEVKSLREGQASMADAFATVDDGEIWLRNLHIPEYHHGTWTNHAVRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +REI L ++ +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRREIDNLIGKLQDGNLTLVPLSLYFIE-GKVKVEFAL 103 >gi|151515349|gb|ABS12377.1| SmpB [Mycobacterium aubagnense] Length = 103 Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +I EY NH PRR Sbjct: 1 IIDTYEAGIALVGTEVKSLREGLASLADAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R TLVP+K+YF+ G K++ AL Sbjct: 61 NRKLLLHRRQIDMLVGKLRDGNFTLVPLKLYFSD-GRVKVEFAL 103 >gi|151515293|gb|ABS12349.1| SmpB [Mycobacterium cookii] Length = 103 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+VL GTEVKSLR K ++ D+YAT ++ E+WL N +IPEY + NH PRR Sbjct: 1 ILDVFEAGVVLLGTEVKSLREGKASLVDAYATVDDGEVWLRNLHIPEYHHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL K +I L ++ + LVP+ +YF G K++LAL Sbjct: 61 NRKLLLHKSQIDALIGKIKDGNLALVPLSLYFFE-GKVKVELAL 103 >gi|151515323|gb|ABS12364.1| SmpB [Mycobacterium malmoense] Length = 103 Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IIELFEAGVALVGTEVKSLREGQASLADAFATVDDGEVWLQNMHIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +R+I L +R + LVP+ +YF+ G K++ AL Sbjct: 61 KRKLLLHRRQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103 >gi|151515471|gb|ABS12438.1| SmpB [Mycobacterium leprae] Length = 103 Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IIELFEAGVALLGTEVKSLREGHASLADAFATVDSGEVWLRNMHIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R + LVP+ +YF G K++LAL Sbjct: 61 NRKLLLHRRQIDTLVGKIRDGNLALVPLSLYFAE-GKVKVELAL 103 >gi|309804690|ref|ZP_07698755.1| SsrA-binding protein [Lactobacillus iners LactinV 09V1-c] gi|308166082|gb|EFO68300.1| SsrA-binding protein [Lactobacillus iners LactinV 09V1-c] Length = 122 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 53/123 (43%), Positives = 77/123 (62%), Gaps = 1/123 (0%) Query: 36 LTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKRE 95 +TGTE+KS+R ++N+ D Y +L N +I EY Q N +NH P R+R+LLL K+E Sbjct: 1 MTGTEIKSVRARRINLKDGYVQTYRGSAFLENVHISEYKQGNIYNHDPLRSRRLLLHKKE 60 Query: 96 IHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 I+ L + GMT++P+K+Y G AK+ + + QGKK YDKRET K+RD DR+ Sbjct: 61 INHLQIIQAQQGMTIIPLKVYLK-HGYAKVLIGVGQGKKQYDKRETIKRRDQDRELKSKY 119 Query: 156 REH 158 + Sbjct: 120 KIR 122 >gi|151515487|gb|ABS12446.1| SmpB [Mycobacterium caprae] Length = 103 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N++IPEY + NH PRR Sbjct: 1 IIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++LAL Sbjct: 61 NRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GKVKVELAL 103 >gi|213622437|ref|ZP_03375220.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 114 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 38/98 (38%), Positives = 53/98 (54%), Gaps = 1/98 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLSKREIH 97 E WL + + + P R RKLLL++RE+ Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELD 113 >gi|151515307|gb|ABS12356.1| SmpB [Mycobacterium parmense] Length = 103 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 IIELFEAGVSLLGTEVKSLREGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R +TL+P+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRHQIDNLIGKIRDGNLTLMPLSLYFSE-GKVKVELAL 103 >gi|151515353|gb|ABS12379.1| SmpB [Mycobacterium phocaicum] Length = 103 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +I EY NH PRR Sbjct: 1 IIDTYEAGIALVGTEVKSLREGLASLADAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R TLVP+K+YF+ G K++ AL Sbjct: 61 NRKLLLHRKQIDTLVGKLRDGNFTLVPLKLYFSD-GRVKVEFAL 103 >gi|151515491|gb|ABS12448.1| SmpB [Mycobacterium kubicae] Length = 103 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 ++ FEAGI L GTEVKSLR + +++D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 VLEVFEAGIALQGTEVKSLREGQASLADAFATVDDGEIWLRNLHIPEYQHGSWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDALIGKIREGNFALVPLSLYFTE-GKVKVEFAL 103 >gi|151515351|gb|ABS12378.1| SmpB [Mycobacterium mucogenicum] Length = 103 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR +++D++AT ++ E+WL N +I EY NH PRR Sbjct: 1 IIDTYEAGIALVGTEVKSLREGLASLADAFATVDDGEVWLRNLHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I L +R TLVP+K+YF+ G K++ AL Sbjct: 61 NRKLLLHRKQIDMLVGKLRDGNFTLVPLKLYFSD-GRVKVEFAL 103 >gi|151515329|gb|ABS12367.1| SmpB [Mycobacterium scrofulaceum] Length = 103 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR + +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 ILEEFEAGVALQGTEVKSLRAGQASLTDAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + LVPM +YF+ G K++ AL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSD-GKVKVEFAL 103 >gi|293363508|ref|ZP_06610264.1| SsrA-binding protein [Mycoplasma alligatoris A21JP2] gi|292552857|gb|EFF41611.1| SsrA-binding protein [Mycoplasma alligatoris A21JP2] Length = 144 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 87/141 (61%), Gaps = 4/141 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++DN+K + NY I+ + EAGIVL G EVKS R S V+++ SY + + DEIWL +S+ Sbjct: 2 KIIADNKKEKRNYEILETIEAGIVLEGWEVKSARASNVSLNTSYCSIKKDEIWLVDSHFS 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y +R+RKLL+ K+E+ +L +T++P KIYF K+++ALA+ Sbjct: 62 QY---MLVKADEKRDRKLLIHKKELLKLKFKSDSKQLTIIPTKIYFKGD-KIKLEIALAR 117 Query: 132 GKKNYDKRETEKKRDWDRQKH 152 G K YDKR+ K + +Q Sbjct: 118 GLKKYDKRDKIAKEEVQKQIK 138 >gi|151515495|gb|ABS12450.1| SmpB [Mycobacterium szulgai] Length = 103 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 IIEVYEAGVALQGTEVKSLREGHASLVDAFATVDDGEIWLRNLHIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLIGKIREGNFALVPLSLYFTE-GKVKVEFAL 103 >gi|158562267|gb|ABW74061.1| smpB [Mycobacterium seoulense] Length = 103 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 ILEEFEAGVALQGTEVKSLRQGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + LVPM +YF+ G K++LAL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVELAL 103 >gi|151515479|gb|ABS12442.1| SmpB [Mycobacterium bovis] gi|151515481|gb|ABS12443.1| SmpB [Mycobacterium bovis] gi|151515483|gb|ABS12444.1| SmpB [Mycobacterium tuberculosis] gi|151515485|gb|ABS12445.1| SmpB [Mycobacterium africanum] Length = 103 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N++IPEY + NH PRR Sbjct: 1 IIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GKVKVEFAL 103 >gi|71892321|ref|YP_278055.1| SsrA-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796427|gb|AAZ41178.1| small protein B; putative tmRNA-binding protein [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 154 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 2/146 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS-YI 70 K ++ N+ A + Y I + E+GI L G EVKS R + V I++SY +F N E ++ NS + Sbjct: 7 KKITQNKHAYHEYFIEKKIESGISLLGWEVKSARSNMVTINNSYVSFYNKEAYICNSIFQ 66 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 Q H R RKLLL K E+ L V + G T + + +Y+ K+++ LA Sbjct: 67 SNVTQFYNETHNSVRVRKLLLKKNELLFLMEKVNQKGYTAIILDLYWK-NSWIKVNIGLA 125 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILR 156 +GKK YDKR W ++K RIL+ Sbjct: 126 KGKKKYDKRNIIHMHKWKKEKIRILK 151 >gi|151515497|gb|ABS12451.1| SmpB [Mycobacterium gastri] Length = 103 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 IIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNYALVPLSLYFTD-GKVKVEFAL 103 >gi|254755537|ref|ZP_05207570.1| SsrA-binding protein [Bacillus anthracis str. Vollum] Length = 102 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 47/100 (47%), Positives = 67/100 (67%) Query: 8 NPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTN 67 KV++ N+KA ++Y I ++EAG+VL GTE+KS+R +VN+ D++A N E+W+ N Sbjct: 3 KGSGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARVHNGEVWVHN 62 Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDG 107 +I Y Q NRFNH P R RKLLL K+EI +L A + G Sbjct: 63 MHISTYEQGNRFNHDPLRTRKLLLHKKEIEKLAGASKETG 102 >gi|151515501|gb|ABS12453.1| SmpB [Mycobacterium kansasii] Length = 103 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 IIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTD-GKVKVEFAL 103 >gi|151515335|gb|ABS12370.1| SmpB [Mycobacterium palustre] Length = 103 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 69/104 (66%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 IV FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IVEVFEAGVALQGTEVKSLREGHASLVDAFATVDDGEVWLRNLHIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +++I RL +R + LVPM +YF+ G K++ AL Sbjct: 61 TRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVEFAL 103 >gi|151515305|gb|ABS12355.1| SmpB [Mycobacterium montefiorense] Length = 103 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 49/104 (47%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 IV FEAG+ L GTEVKSLR+ + +++D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IVELFEAGVALVGTEVKSLRLGQASLADAFATVDDGEVWLRNLHIPEYEHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L +R + LVP+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRAQIDTLIGKIRDGNLALVPLSLYFSE-GKVKVEFAL 103 >gi|151515325|gb|ABS12365.1| SmpB [Mycobacterium nebraskense] Length = 103 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 72/104 (69%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 ILEEFEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + LVPM +YF+ G K++LAL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVELAL 103 >gi|151515505|gb|ABS12455.1| SmpB [Mycobacterium kansasii] Length = 103 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 IIEAFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTD-GKVKVEFAL 103 >gi|151515499|gb|ABS12452.1| SmpB [Mycobacterium kansasii] gi|151515503|gb|ABS12454.1| SmpB [Mycobacterium kansasii] gi|151515507|gb|ABS12456.1| SmpB [Mycobacterium kansasii] gi|151515509|gb|ABS12457.1| SmpB [Mycobacterium kansasii] Length = 103 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 IIEVFEAGMALQGTEVKSLREGHASLVDAFATIDDGEIWLRNLHIPEYQHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLIGKLREGNFALVPLSLYFTE-GKVKVEFAL 103 >gi|151515475|gb|ABS12440.1| SmpB [Mycobacterium intermedium] Length = 103 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 IV+ FEAG+ L GTEVKSLR ++ D++AT ++ E+WL N +IPEY + NH PRR Sbjct: 1 IVQVFEAGVALQGTEVKSLRAGHASLVDAFATVDDGEVWLRNLHIPEYRHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 RKLLL +REI L +R LVP+ +YF G K++ AL Sbjct: 61 TRKLLLHRREIDGLIGKLREGNYALVPLSLYFTE-GKVKVEFAL 103 >gi|151515337|gb|ABS12371.1| SmpB [Mycobacterium interjectum] Length = 103 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 70/104 (67%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I +EAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 IEELYEAGVALQGTEVKSLREGHASLADAFATVDDGEVWLRNLYIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + LVPM +YF+ G K++ AL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVEFAL 103 >gi|151515493|gb|ABS12449.1| SmpB [Mycobacterium asiaticum] Length = 103 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR ++ D++AT ++ EIWL N +IPEY + NH PRR Sbjct: 1 ILEVFEAGVALQGTEVKSLREGHASLVDAFATVDDGEIWLRNVHIPEYRHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +R+I L +R LVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRRQIDTLIGKIREGNYALVPLSMYF-YDGKVKVEFAL 103 >gi|151515339|gb|ABS12372.1| SmpB [Mycobacterium abscessus] gi|151515341|gb|ABS12373.1| SmpB [Mycobacterium bolletii] gi|158562261|gb|ABW74058.1| smpB [Mycobacterium massiliense] Length = 103 Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E+WL +IP+Y NH P R Sbjct: 1 IIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDDGEVWLRGVHIPQYDHGTWTNHAPLR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I L R +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLD-GKVKVEFAL 103 >gi|151515327|gb|ABS12366.1| SmpB [Mycobacterium parascrofulaceum] Length = 103 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 ILEEFEAGVALQGTEVKSLRAGHASLTDAFATVDDGEVWLRNLYIPEYRHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + LVPM +YF+ G K++ AL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALVPMSLYFSE-GKVKVEFAL 103 >gi|151515343|gb|ABS12374.1| SmpB [Mycobacterium chelonae] Length = 103 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 47/104 (45%), Positives = 68/104 (65%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E+WL +IP+Y NH P R Sbjct: 1 ILDVYEAGVQLVGTEVKTLREGKASLVDAFATIDDGEVWLRALHIPQYDHGTWTNHAPLR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I +L VR +TLVP+ +YF G K++LAL Sbjct: 61 NRKLLLHRAQIDQLVGKVRDGNLTLVPLSLYFLD-GKVKVELAL 103 >gi|151515309|gb|ABS12357.1| SmpB [Mycobacterium avium subsp. paratuberculosis] gi|151515311|gb|ABS12358.1| SmpB [Mycobacterium avium subsp. avium] gi|151515313|gb|ABS12359.1| SmpB [Mycobacterium avium subsp. silvaticum] Length = 103 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAG+ L GTEVKSLR + +++D++AT ++ E+WL N YIPEY + NH PRR Sbjct: 1 IIETYEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIPEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + L+P+ +YF+ G K++ AL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE-GKVKVEFAL 103 >gi|151515361|gb|ABS12383.1| SmpB [Mycobacterium moriokaense] Length = 99 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 1/100 (1%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +FEAG+ L GTEVKSLR + ++ D++AT ++ E+WL N +IPEY NH PRR Sbjct: 1 ILETFEAGVQLVGTEVKSLRDGQASLVDAFATVDDGEVWLRNLHIPEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKI 125 NRKLLL +++I L +R +TLVP+ +YF+ G K+ Sbjct: 61 NRKLLLHRKQIDNLIGRIRDGNLTLVPLSLYFS-NGKVKV 99 >gi|151515345|gb|ABS12375.1| SmpB [Mycobacterium immunogenum] Length = 103 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 46/104 (44%), Positives = 67/104 (64%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ +EAG+ L GTEVK+LR K ++ D++AT ++ E+WL +IP+Y NH P R Sbjct: 1 IIDVYEAGVQLVGTEVKTLREGKASLVDAFATIDDGEVWLRALHIPQYDHGTWTNHAPLR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL + +I +L VR +TLVP+ +YF G K++ AL Sbjct: 61 NRKLLLHRAQIDQLVGKVRDGNLTLVPLSLYFLD-GKVKVEFAL 103 >gi|289804841|ref|ZP_06535470.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 108 Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats. Identities = 36/93 (38%), Positives = 49/93 (52%), Gaps = 1/93 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K P ++ N++AR+ Y I FEAG+ L G EVKSLR K NI DSY ++ Sbjct: 16 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 75 Query: 61 DEIWLTNSYIPEY-LQANRFNHYPRRNRKLLLS 92 E WL + + + P R RKLLL+ Sbjct: 76 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLN 108 >gi|328465056|gb|EGF36333.1| SsrA-binding protein [Lactobacillus rhamnosus MTCC 5462] Length = 116 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 1/107 (0%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K + P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N Sbjct: 1 MAKKHQQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDG 107 +E WL N +I Y + N FN P RNRKLLL K+EI +L R G Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKKEIRKLGQMTARQG 106 >gi|148378001|ref|YP_001256877.1| SsrA-binding protein [Mycoplasma agalactiae PG2] gi|238686693|sp|A5IZI0|SSRP_MYCAP RecName: Full=SsrA-binding protein gi|148292047|emb|CAL59439.1| SsrA binding protein [Mycoplasma agalactiae PG2] Length = 147 Score = 112 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV+S+NRK Y Y I+ EAGI L G EVKS R VN+++SY F+ E++L N+ Sbjct: 2 KVISENRKGLYGYKIIEKHEAGISLLGWEVKSARAQTVNLTNSYIFFKKGELFLCNANFA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR-DGMTLVPMKIYFNAKGLAKIDLALA 130 +Y+ R+RKLL+ K+EI RL + R T+ P KIYFN K K+++AL Sbjct: 62 KYMLLKVEED---RDRKLLMHKKEIIRLKNKLDRLSSTTIKPTKIYFNNKSKIKVEIALV 118 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 QG DKRE KKRD ++ ++ + Sbjct: 119 QGMNRADKREDLKKRDNEKYMQKVKSNY 146 >gi|151515435|gb|ABS12420.1| SmpB [Mycobacterium houstonense] Length = 103 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 48/102 (47%), Positives = 69/102 (67%), Gaps = 1/102 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ ++EAGI L GTEVKSLR + +++D++AT ++ EIWL N +I EY NH PRR Sbjct: 1 ILDTYEAGIALMGTEVKSLREGQASLADAFATVDDGEIWLRNVHIAEYHHGTWTNHAPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 NRKLLL +++I L +R +TLVP+ +YF+ G K+ L Sbjct: 61 NRKLLLHRKQIDNLIGKIRDGNLTLVPLSMYFSG-GKVKVSL 101 >gi|295698526|ref|YP_003603181.1| SsrA-binding protein [Candidatus Riesia pediculicola USDA] gi|291157248|gb|ADD79693.1| SsrA-binding protein [Candidatus Riesia pediculicola USDA] Length = 162 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 85/159 (53%), Gaps = 6/159 (3%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 + + + + N+K+ Y Y I + EAGIVL G E KS+R KV+I+ SY ++ E + Sbjct: 2 KKNDIKIQKIVLNKKSSYEYTIEKKIEAGIVLYGWETKSIRKKKVDITRSYVEIKDKEAY 61 Query: 65 LTNSYIPEYLQANRFN-----HYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNA 119 ++ I + +R+RKLLL K EI+ L + + R G T V + +Y+ Sbjct: 62 ISEMNISSEKSFSVNKDLNHLEKNKRSRKLLLKKNEIYFLSSLINRKGYTAVAISLYWK- 120 Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + KI++ + +GKK YDKR K+ +W +K R L+ Sbjct: 121 NNICKIEIGIGKGKKQYDKRIKIKENEWKIRKMRTLKNK 159 >gi|218133574|ref|ZP_03462378.1| hypothetical protein BACPEC_01441 [Bacteroides pectinophilus ATCC 43243] gi|217990949|gb|EEC56955.1| hypothetical protein BACPEC_01441 [Bacteroides pectinophilus ATCC 43243] Length = 115 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 42/114 (36%), Positives = 69/114 (60%), Gaps = 1/114 (0%) Query: 46 VSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR 105 + K +I ++Y EN ++++ N I Y + N FN P R ++LLL K EI++L A + Sbjct: 1 MGKCSIKEAYVRIENGQVYVCNMNITPYEKGNIFNKDPLRPKRLLLHKSEINKLAAQTAQ 60 Query: 106 DGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 G T+VP+++Y N L K+++ LA+GKK YDKR+ K+D R+ + + N Sbjct: 61 QGYTVVPLQVYLNGS-LIKMEIGLARGKKLYDKRQDIAKKDQRREAEKEFKVRN 113 >gi|161833788|ref|YP_001597984.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri GWSS] gi|293977899|ref|YP_003543329.1| SsrA-binding protein [Candidatus Sulcia muelleri DMIN] gi|152206278|gb|ABS30588.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri GWSS] gi|292667830|gb|ADE35465.1| SsrA-binding protein [Candidatus Sulcia muelleri DMIN] Length = 146 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 92/143 (64%), Gaps = 4/143 (2%) Query: 11 KKVVSDNRKARYNYHIVRSFE--AGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNS 68 KK+ +NR+A ++Y ++ ++ AGI L G+EVKS++ + V++++SY + I++ + Sbjct: 3 KKLNINNRRAYFDYELINKYKFIAGIELLGSEVKSIKNNNVSLNNSYCKLIKNNIYVFDM 62 Query: 69 YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLA 128 YI YL FN P+R +KLLL ++EI+ +Y + + ++P I+ N +G K+ Sbjct: 63 YISNYLLGINFN--PKRVKKLLLKRKEINFIYNKINELKLNIIPTNIFLNERGYIKLIFF 120 Query: 129 LAQGKKNYDKRETEKKRDWDRQK 151 LA+ KKNYDKR++ K + ++R+K Sbjct: 121 LAKSKKNYDKRQSIKNKYFEREK 143 >gi|291320741|ref|YP_003516006.1| ssrA binding protein [Mycoplasma agalactiae] gi|290753077|emb|CBH41053.1| SsrA binding protein [Mycoplasma agalactiae] Length = 147 Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 KV+S+NRK Y Y I+ EAGI L G EVKS R VN+++SY F+ E++L N+ Sbjct: 2 KVISENRKGLYGYKIIEKHEAGISLLGWEVKSARAQTVNLTNSYIFFKKGELFLCNANFA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR-DGMTLVPMKIYFNAKGLAKIDLALA 130 +Y+ R+RKLL+ K+EI RL + R T+ P KIYFN K K+++AL Sbjct: 62 KYMLLKVEED---RDRKLLMHKKEIIRLKNKLDRLSSATIKPTKIYFNNKSKIKVEIALV 118 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 QG DKRE KK+D ++ ++ + Sbjct: 119 QGMNKADKREDLKKKDNEKYIQKVKSNY 146 >gi|151515315|gb|ABS12360.1| SmpB [Mycobacterium chimaera] gi|151515317|gb|ABS12361.1| SmpB [Mycobacterium intracellulare] gi|151515319|gb|ABS12362.1| SmpB [Mycobacterium triplex] Length = 103 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/104 (48%), Positives = 73/104 (70%), Gaps = 1/104 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ SFEAG+ L GTEVKSLR + +++D++AT ++ E+WL N YI EY + NH PRR Sbjct: 1 IIESFEAGVALQGTEVKSLREGQASLADAFATIDDGEVWLRNLYIAEYQHGSWTNHDPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 NRKLLL +++I RL +R + L+P+ +YF+ G K++LAL Sbjct: 61 NRKLLLHRQQIDRLVGKIRDGNLALMPLSLYFSE-GKVKVELAL 103 >gi|151515489|gb|ABS12447.1| SmpB [Mycobacterium microti] Length = 100 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 48/101 (47%), Positives = 68/101 (67%), Gaps = 1/101 (0%) Query: 26 IVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRR 85 I+ FEAG+ L GTEVKSLR + +++DS+AT ++ E+WL N++IPEY + NH PRR Sbjct: 1 IIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVWLRNAHIPEYRHGSWTNHEPRR 60 Query: 86 NRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 NRKLLL +R+I L +R LVP+ +YF G K++ Sbjct: 61 NRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAE-GKVKVE 100 >gi|162450841|ref|YP_001613208.1| SmpB-like protein [Sorangium cellulosum 'So ce 56'] gi|161161423|emb|CAN92728.1| SmpB-like protein [Sorangium cellulosum 'So ce 56'] Length = 139 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 2/122 (1%) Query: 34 IVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSK 93 +VL G+EVK LR ++DS+ EN E +L IP F H +R RKLLL + Sbjct: 1 MVLLGSEVKMLRDGAAELTDSWCAIENGEAFLKGVNIPVMP-GAAFGHEAKRPRKLLLHE 59 Query: 94 REIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHR 153 EI + +V R+GMT++ ++YF G K ++ALA+GKK DKRE+ K++D R+ Sbjct: 60 SEIEAIRKSVEREGMTVIATRLYFK-NGRVKAEIALAKGKKTVDKRESLKEKDATREARA 118 Query: 154 IL 155 + Sbjct: 119 AM 120 >gi|145640651|ref|ZP_01796234.1| SsrA-binding protein [Haemophilus influenzae R3021] gi|145274577|gb|EDK14440.1| SsrA-binding protein [Haemophilus influenzae 22.4-21] Length = 119 Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats. Identities = 46/115 (40%), Positives = 67/115 (58%), Gaps = 2/115 (1%) Query: 44 LRVSKVNISDSYATFENDEIWLTNSYIPEYL-QANRFNHYPRRNRKLLLSKREIHRLYAA 102 +R K NISDSY F+N E +L + I + P R RKLLL+KRE+ L+ Sbjct: 1 MRAGKANISDSYVIFKNGEAFLFGASIQPLNVASTHIVCDPTRTRKLLLNKRELASLFGK 60 Query: 103 VRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 RDG T+V + +Y+ + AK+ + LA+GKK DKR+ K+R+W K RI++ Sbjct: 61 ANRDGFTIVALSLYWKS-AWAKVKIGLAKGKKQQDKRDDIKEREWKVTKDRIMKN 114 >gi|116515095|ref|YP_802724.1| SsrA-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256949|gb|ABJ90631.1| tmRNA-binding protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 156 Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 49/137 (35%), Positives = 76/137 (55%), Gaps = 2/137 (1%) Query: 22 YNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNH 81 YN++I + F +GI L G EVKS+R V ISD + +N+E++LTN + + Sbjct: 17 YNFYIKKKFISGIELQGWEVKSIRAGHVQISDGHVIIKNNEVYLTNVQFQPLIYTSDLKF 76 Query: 82 Y-PRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRE 140 R RKLLL K+EI L + G T+VP+K+++ K KI +AL +GK DKR+ Sbjct: 77 CLSNRVRKLLLKKKEIFFLKMYSIKKGYTIVPIKLFW-IKSWCKIKIALVKGKSKMDKRQ 135 Query: 141 TEKKRDWDRQKHRILRE 157 ++ W ++ I + Sbjct: 136 DKRNNSWKIERDTIFKR 152 >gi|32490861|ref|NP_871115.1| SsrA-binding protein [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166067|dbj|BAC24258.1| smpB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 160 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 2/157 (1%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 K ++S N++A+YN +I + EAG+ L G EVKSLR + ++IS SY T ++ Sbjct: 2 KKKNTEKNFLIISRNKRAKYNTYIKKEMEAGLSLKGWEVKSLRSNNISISTSYVTLKSSS 61 Query: 63 IWLTNS-YIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKG 121 +LT + + F + RN +LLL K EI+ L+ V+ G ++V + +Y+ Sbjct: 62 AYLTGAVFQSNTNNNMNFIYEKERNIQLLLHKHEINSLFGYVKIKGYSIVVISLYWKYH- 120 Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + +A+GKK DKR KKR+W+ +K R+ +++ Sbjct: 121 KAKLKIGIAKGKKKIDKRLEIKKREWEIKKSRLFKKN 157 >gi|239631235|ref|ZP_04674266.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525700|gb|EEQ64701.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 95 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 1/96 (1%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ K R P +++ N+KA ++Y+I+ ++EAGI LTGTE+KS+R K+N+ D +A N Sbjct: 1 MAKKHRQKP-DNLLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREI 96 +E WL N +I Y + N FN P RNRKLLL KREI Sbjct: 60 NEAWLENVHISPYKEGNLFNVDPMRNRKLLLHKREI 95 >gi|313678889|ref|YP_004056629.1| SsrA-binding protein [Mycoplasma bovis PG45] gi|312950824|gb|ADR25419.1| SsrA-binding protein [Mycoplasma bovis PG45] Length = 148 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 59/148 (39%), Positives = 85/148 (57%), Gaps = 4/148 (2%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K++S+NRK Y Y I+ E GI L G EVKS R +N+++SY F+ E++L N+ Sbjct: 2 KIISENRKGLYGYKIIEKHEVGISLLGWEVKSARAQTINLTNSYVFFKKGELFLCNANFA 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRR-DGMTLVPMKIYFNAKGLAKIDLALA 130 +Y R+RKLL+ KREI RL + R T+ P+KIYFN K KI++AL Sbjct: 62 KY---MLLKVDEDRDRKLLMHKREIIRLKNKLDRLSSTTIKPVKIYFNNKSKIKIEIALV 118 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 Q DKRE KK+D ++ +I ++ Sbjct: 119 QSMNKADKREELKKKDNEKYIQKIKSQY 146 >gi|307128673|ref|YP_003880703.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri CARI] gi|306483135|gb|ADM90005.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri CARI] Length = 147 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 45/148 (30%), Positives = 86/148 (58%), Gaps = 4/148 (2%) Query: 12 KVVSDNRKARYNYHIVRSFE--AGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 + N+KA + Y ++ ++ AGIVL G+EVKS++ +KV+I++SY N+ I++ + Y Sbjct: 2 NLNIKNKKAFFYYELLNKYKFIAGIVLLGSEVKSIKKNKVSINNSYCKLINNNIYVYDMY 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I Y + F+ + L K+EI+++ + ++P KI N +G K+ L Sbjct: 62 ISNYDFGSNFDSKRIKKIL--LKKKEIYKIKNKINEFKFNIIPTKIILNNRGYIKLIFFL 119 Query: 130 AQGKKNYDKRETEKKRDWDRQKHRILRE 157 A+ K YDKR++ K+++ +R+K +++ Sbjct: 120 AKSKTKYDKRQSIKRKEIEREKKKLINN 147 >gi|269114965|ref|YP_003302728.1| SsrA-binding protein [Mycoplasma hominis] gi|268322590|emb|CAX37325.1| SsrA-binding protein [Mycoplasma hominis ATCC 23114] Length = 143 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 79/142 (55%), Gaps = 5/142 (3%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEND-EIWLTNSYI 70 K++ N+ + NY I ++E GI L G EVKSLR + +S+ + N+ E+W+ N I Sbjct: 3 KLIISNKFIKSNYEIDSTYECGISLLGWEVKSLRAKNAKLDNSFCSISNNLELWINNLNI 62 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 +Y+Q +R+RKLL+ K EI +L + +VP IY++ K+++ALA Sbjct: 63 AQYMQVK---GDLKRSRKLLMHKSEILKLKNKQEKFSFVIVPASIYWS-NNHIKVEIALA 118 Query: 131 QGKKNYDKRETEKKRDWDRQKH 152 + K YDKR E++ + +Q Sbjct: 119 KALKKYDKRAKERENEIKKQIK 140 >gi|193216544|ref|YP_001999786.1| SsrA-binding protein [Mycoplasma arthritidis 158L3-1] gi|193001867|gb|ACF07082.1| SsrA-binding protein [Mycoplasma arthritidis 158L3-1] Length = 143 Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 5/144 (3%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYA-TFENDEIWLTNSYIP 71 ++ N+ + Y I ++E GI L G E KSLR + S+ ++DE+WL N+YI Sbjct: 3 LIVKNKFPKLEYEIHSTYECGISLLGWEAKSLRAKNAKLESSFCSISQSDELWLNNAYIA 62 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y P R+RKLL+ + EI +L + +R + +P+ Y+ K+++ALA+ Sbjct: 63 QY---MLVKGDPLRSRKLLMHRHEIKKLRSLQQRLNLIFIPLSFYWRGN-KIKVEIALAK 118 Query: 132 GKKNYDKRETEKKRDWDRQKHRIL 155 +DKRE KK + + +L Sbjct: 119 HLNKHDKREKIKKDEAKKFIKAVL 142 >gi|71894492|ref|YP_278600.1| SsrA-binding protein [Mycoplasma synoviae 53] gi|123644077|sp|Q4A5T2|SSRP_MYCS5 RecName: Full=SsrA-binding protein gi|71851280|gb|AAZ43889.1| SsrA-binding protein [Mycoplasma synoviae 53] Length = 143 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 52/126 (41%), Positives = 81/126 (64%), Gaps = 4/126 (3%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+ A+ NY I+++FEAGI L G EVKS R S V + ++Y + DE++L SY Sbjct: 2 KIIATNKNAKRNYEILKTFEAGIKLEGWEVKSARASSVELKNAYCSIYKDEVFLKESYFK 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 +Y+ +NRKLLL K+EI ++ + + ++L+P KIYFN+ L K++LAL + Sbjct: 62 KYMLLKVEE---TKNRKLLLHKKEILKIKQEL-QKNLSLIPTKIYFNSNSLIKVELALGR 117 Query: 132 GKKNYD 137 G K YD Sbjct: 118 GLKKYD 123 >gi|319760668|ref|YP_004124606.1| ssrA-binding protein [Candidatus Blochmannia vafer str. BVAF] gi|318039382|gb|ADV33932.1| ssrA-binding protein [Candidatus Blochmannia vafer str. BVAF] Length = 153 Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 K + N+ + Y I + E+G+VL G EVK++R +V I +SY +F+N E ++ NS+ Sbjct: 6 SKQIIQNKGVYHKYFIEKKIESGLVLLGWEVKAIRSKQVVIDNSYISFQNQEAFIYNSFF 65 Query: 71 PEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALA 130 + N + R RKLLL K+E+ L ++R T+V + +++ K + LA Sbjct: 66 KKINTNNNPIYDTNRIRKLLLKKQELLFLKEKIKRYKYTIVIINLFWK-NSWIKATIGLA 124 Query: 131 QGKKNYDKRETEKKRDWDRQKHRILREH 158 +GK+N+DKR +W +K +++ Sbjct: 125 KGKRNFDKRNIVHSNEWKSKKQNLVKYR 152 >gi|301116127|ref|XP_002905792.1| hypothetical protein PITG_04079 [Phytophthora infestans T30-4] gi|262109092|gb|EEY67144.1| hypothetical protein PITG_04079 [Phytophthora infestans T30-4] Length = 180 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 51/153 (33%), Positives = 76/153 (49%), Gaps = 9/153 (5%) Query: 10 PKKVVSDN----RKARYNY-HIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIW 64 P KV+ N RKA NY + R + GIVL +EVKSLR ++S ++ F E++ Sbjct: 31 PIKVLCRNQKFVRKAAGNYYEVEREWNLGIVLQPSEVKSLRNRNADLSTAFGAFYKHELF 90 Query: 65 LTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAK 124 L + IP + Q P R RKLL ++ E+ +L R L+PM+I G K Sbjct: 91 LHDLNIPVWRQGLIGRPEPTRVRKLLANRSELKKLQEFANRPNAQLIPMRIEVGNTGWIK 150 Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 + +A + D R +RD +R+ R LR+ Sbjct: 151 VIMAACFKRGQIDNR----RRDDEREIKRQLRD 179 >gi|156185998|gb|ABU55317.1| SsrA-binding protein [Callosobruchus chinensis] gi|156186000|gb|ABU55318.1| SsrA-binding protein [Callosobruchus chinensis] Length = 103 Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 54/103 (52%), Positives = 72/103 (69%) Query: 35 VLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKR 94 L +EV+SLR KVNISD+Y +N EIWL +I EY A+R NH P+R RKLLL K+ Sbjct: 1 ALLSSEVQSLRERKVNISDAYVIKKNSEIWLHYMHIAEYKAADRKNHKPKRERKLLLHKK 60 Query: 95 EIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYD 137 EI+ L ++ G+T+VP+ IYFN KG AK ++A+ +GKK YD Sbjct: 61 EINELIGQIKTAGITVVPLSIYFNDKGFAKTEIAIVKGKKLYD 103 >gi|330875247|gb|EGH09396.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 79 Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQANRFN 80 E WL +I A+ Sbjct: 59 GEAWLMGCHITPLKTASTHV 78 >gi|167957050|ref|ZP_02544124.1| SsrA-binding protein [candidate division TM7 single-cell isolate TM7c] gi|169837267|ref|ZP_02870455.1| SsrA-binding protein [candidate division TM7 single-cell isolate TM7a] Length = 160 Score = 98.7 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 90/161 (55%), Gaps = 8/161 (4%) Query: 1 MSLKSRGNPPKKVVSD--NRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF 58 M+ KS+ + K ++ N++A+++YH+ AG+VL G EV++ R V + ++AT Sbjct: 1 MAKKSKQDK-KPIIPQIVNKRAKFDYHLEEEIVAGMVLNGREVRAARDGHVQLKGAFATI 59 Query: 59 ENDEIWLTNSYIPEYLQAN---RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115 E+WL N+ L +KLL+S+++++ L ++ G T+VP+K+ Sbjct: 60 RGGELWLNNASFSIKLNERGKANQKTVDTEPKKLLVSRKQLNNLIEQ-KQQGFTIVPIKM 118 Query: 116 YFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 K K+ ++L +GKK DKRET K+RD +R RIL+ Sbjct: 119 LTGGK-FIKLVISLGKGKKKLDKRETIKRRDIERDAKRILK 158 >gi|1100884|gb|AAA82715.1| hypothetical SmpB [Vibrio cholerae] Length = 81 Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K ++ N+KAR+ Y I FEAG+ L G EVKSLR K NI++SY + Sbjct: 1 MTKKKTNTKAGSNTIALNKKARHEYFIEDEFEAGMELQGWEVKSLRQGKANIAESYVYIK 60 Query: 60 NDEIWLTNSYIPEYLQANR 78 + E +++ I QA+ Sbjct: 61 DGEAFISGMTIIPLQQAST 79 >gi|330883909|gb|EGH18058.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 90 Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + ++ N+KAR++Y I FEAG+VL G EVKSLR +KV + DSY ++ Sbjct: 1 MAKLKKNPTG--TIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRATKVQLVDSYVLLKD 58 Query: 61 DEIWLTNSYIPEYLQANRFN 80 E WL +I A+ Sbjct: 59 GEAWLMGCHITPLKTASTHV 78 >gi|255023119|ref|ZP_05295105.1| SsrA-binding protein [Listeria monocytogenes FSL J1-208] Length = 97 Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 1/96 (1%) Query: 63 IWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGL 122 ++L N +I Y Q NR+NH P R RKLLL K++I RL + G ++VP+K+Y G Sbjct: 1 MFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESGYSIVPLKMYIKD-GY 59 Query: 123 AKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 AK+ + +A+GKK YDKR+ K+++ R R +E Sbjct: 60 AKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKER 95 >gi|284125884|ref|ZP_06386996.1| SsrA-binding protein [Candidatus Poribacteria sp. WGA-A3] gi|283829178|gb|EFC33604.1| SsrA-binding protein [Candidatus Poribacteria sp. WGA-A3] Length = 87 Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats. Identities = 39/83 (46%), Positives = 59/83 (71%) Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 N NH P R R LLL K+EI L V++ G+TLVP+++YFN +G+ K++L LA+GKK+Y Sbjct: 2 NIMNHEPLRPRGLLLHKKEIRTLTGKVQQKGLTLVPLRMYFNQRGVVKVELGLARGKKHY 61 Query: 137 DKRETEKKRDWDRQKHRILREHN 159 D+RET K+R+ R+ R ++ + Sbjct: 62 DRRETVKQREAGREMERAMKRAS 84 >gi|153839494|ref|ZP_01992161.1| SmpB protein [Vibrio parahaemolyticus AQ3810] gi|149746973|gb|EDM57961.1| SmpB protein [Vibrio parahaemolyticus AQ3810] Length = 80 Score = 96.8 bits (240), Expect = 1e-18, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 1 MSLKS-RGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFE 59 M+ K + ++ N+KAR+ Y I EAG+ L G EVK+LR K NIS+SY Sbjct: 1 MAKKKSKQKAGSNTIALNKKARHEYFIEDEIEAGLELQGWEVKALRQGKANISESYVFMR 60 Query: 60 NDEIWLTNSYIPEYLQANR 78 + E +++ I Q Sbjct: 61 DGEAFVSGMTITPLNQHRH 79 >gi|153812428|ref|ZP_01965096.1| hypothetical protein RUMOBE_02827 [Ruminococcus obeum ATCC 29174] gi|149831590|gb|EDM86677.1| hypothetical protein RUMOBE_02827 [Ruminococcus obeum ATCC 29174] Length = 92 Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 1/92 (1%) Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I Y + N FN P R RKLLL + EI+++ +++ G+TLVP+K+YF L K+++ Sbjct: 1 MHISPYEKGNIFNKDPMRVRKLLLHRYEINKIEGSLQEKGLTLVPLKVYFKDS-LVKLEI 59 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +A+GKK YDKR+ K+D R+ R + N Sbjct: 60 GVARGKKLYDKRQDIAKKDQRREAEREFKVKN 91 >gi|289609484|emb|CBI60439.1| unnamed protein product [Sordaria macrospora] Length = 82 Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 46/61 (75%) Query: 11 KKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 KK V++NR+AR++Y I +EAGI LTGTEVKSLR + +I++SYA + ++WL NS + Sbjct: 12 KKTVAENRRARFDYEIDTVYEAGIALTGTEVKSLRFGEGSITESYADVRDGQVWLINSNV 71 Query: 71 P 71 P Sbjct: 72 P 72 >gi|323941363|gb|EGB37547.1| SsrA-binding protein [Escherichia coli E482] Length = 88 Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 P R RKLLL++RE+ LY V R+G T+V + +Y+ K+ + +A+GKK + Sbjct: 6 THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAKGKKQH 64 Query: 137 DKRETEKKRDWDRQKHRILRE 157 DKR K+R+W K RI++ Sbjct: 65 DKRSDIKEREWQVDKARIMKN 85 >gi|323221558|gb|EGA05971.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] Length = 88 Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats. Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 1/81 (1%) Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 P R RKLLL++RE+ LY + R+G T+V + +Y+ K+ + +A+GKK + Sbjct: 6 THVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQH 64 Query: 137 DKRETEKKRDWDRQKHRILRE 157 DKR K+R+W K RI++ Sbjct: 65 DKRSDLKEREWQLDKARIMKN 85 >gi|254672339|emb|CBA05517.1| SsrA-binding protein [Neisseria meningitidis alpha275] Length = 146 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 R RKLLL++ EI++L R G T+VP+ ++F+ +G K+++ LA+GKK + Sbjct: 65 THIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFS-RGKIKMEIGLAKGKKQH 123 Query: 137 DKRETEKKRDWDRQKHRILRE 157 DKR++ K+ DW R+K R+++ Sbjct: 124 DKRQSMKEADWKREKQRLIKH 144 >gi|167586876|ref|ZP_02379264.1| SsrA-binding protein [Burkholderia ubonensis Bu] Length = 76 Score = 89.9 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 41/70 (58%) Query: 14 VSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEY 73 + DNRKA ++YHI +EAG+VL G EVK+LR + I + Y +N EI+L ++I Sbjct: 3 IIDNRKAHFDYHIEERYEAGLVLEGWEVKALRAGRGQIKEGYVIVKNAEIFLIGTHISPL 62 Query: 74 LQANRFNHYP 83 +A+ Sbjct: 63 PEASTHIKPD 72 >gi|325276138|ref|ZP_08141946.1| SsrA-binding protein [Pseudomonas sp. TJI-51] gi|324098729|gb|EGB96767.1| SsrA-binding protein [Pseudomonas sp. TJI-51] Length = 96 Score = 88.7 bits (219), Expect = 3e-16, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 2/92 (2%) Query: 68 SYIPEYLQ-ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKID 126 S+IP + P R RKLLL+KRE+ RL AAV + G T V + +Y++ L K + Sbjct: 2 SHIPPLTTASTHVIADPMRTRKLLLNKRELERLEAAVAQKGYTCVALSLYWSKH-LIKCE 60 Query: 127 LALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 +AL +GKK +DKR+T ++RD +R+ R +R Sbjct: 61 IALGKGKKEFDKRDTVRERDSNRELQRAVRNK 92 >gi|207108375|ref|ZP_03242537.1| SsrA-binding protein [Helicobacter pylori HPKX_438_CA4C1] Length = 103 Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 60/101 (59%), Gaps = 1/101 (0%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K+++ N+KA ++Y I+ + EAG+VL G+EVK+LR ++VN+ D++ E +L +I Sbjct: 2 KLIASNKKAYFDYEILETLEAGLVLLGSEVKALRQTRVNLKDNFVKIIKGEAFLFGVHIS 61 Query: 72 EY-LQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLV 111 + RR RKLLL K+++ + ++ +++V Sbjct: 62 YLDTIHAYYKPNERRERKLLLHKKQLLKWQIEASKERLSIV 102 >gi|219128057|ref|XP_002184239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217404470|gb|EEC44417.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 102 Score = 87.2 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 41/102 (40%), Positives = 52/102 (50%), Gaps = 5/102 (4%) Query: 19 KARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE--IWLTNSYIPEYLQA 76 +A NY IV + EAGI L GTEVKS+R K+N+ DSY DE L N ++ + Sbjct: 1 RAYRNYEIVDAIEAGISLVGTEVKSIRNGKLNLRDSYIRPTKDEWSGILYNVHVHIGKHS 60 Query: 77 N---RFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKI 115 F H R R LL K E +L + GMT VP+K Sbjct: 61 QAGAFFQHEETRPRALLAHKAEARKLLQQPEQQGMTSVPLKA 102 >gi|256370743|ref|YP_003108568.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri SMDSEM] gi|256009535|gb|ACU52895.1| SsrA (tmRNA)-binding protein [Candidatus Sulcia muelleri SMDSEM] Length = 150 Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 3/140 (2%) Query: 12 KVVSDNRKARYNYHIV--RSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSY 69 K++ +N+KA ++Y+++ F AGI L G EVK ++ KV+I +SY N+ I++ + Y Sbjct: 2 KLIINNKKAGFDYNLLKKEKFLAGIELLGIEVKLIKQKKVSIKNSYCKLINNNIYIFDMY 61 Query: 70 IPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLAL 129 I P+R RKLLL K+EI+++ ++ + ++P +I N + KI L Sbjct: 62 ISN-SNIYNTKFSPKRRRKLLLKKKEINQIKKQIKNLNLNIIPTEIVLNNRNFIKIKFFL 120 Query: 130 AQGKKNYDKRETEKKRDWDR 149 A+ KK Y+KR K + ++ Sbjct: 121 AKSKKKYEKRNLRKIKSLEK 140 >gi|325276140|ref|ZP_08141947.1| SsrA-binding protein [Pseudomonas sp. TJI-51] gi|324098716|gb|EGB96755.1| SsrA-binding protein [Pseudomonas sp. TJI-51] Length = 58 Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 2/60 (3%) Query: 1 MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60 M+ + + ++ N+KAR++Y I FEAG+VL+G EVKSLR K ++ DSY ++ Sbjct: 1 MAKQKKHPTG--TIAQNKKARHDYFIEHKFEAGLVLSGWEVKSLRAGKAHLVDSYVLLKD 58 >gi|238762776|ref|ZP_04623745.1| hypothetical protein ykris0001_9550 [Yersinia kristensenii ATCC 33638] gi|238699081|gb|EEP91829.1| hypothetical protein ykris0001_9550 [Yersinia kristensenii ATCC 33638] Length = 76 Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 84 RRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEK 143 R RKLLL+KRE+ L V RDG T+V + +Y+ K+ + +A+GKK++DKR+ K Sbjct: 1 MRTRKLLLNKRELDSLIGKVNRDGFTVVALSVYWK-NAWVKVKIGVAKGKKDHDKRDDIK 59 Query: 144 KRDWDRQKHRILREHN 159 R+W K RI++ N Sbjct: 60 DREWKLDKARIMKHAN 75 >gi|225011324|ref|ZP_03701779.1| SmpB protein [Flavobacteria bacterium MS024-3C] gi|225004539|gb|EEG42506.1| SmpB protein [Flavobacteria bacterium MS024-3C] Length = 93 Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats. Identities = 36/83 (43%), Positives = 55/83 (66%), Gaps = 1/83 (1%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATF-ENDEIWLTNSYI 70 K+ N++AR+ Y ++ F AGIVL GTE+KS+R+ K NI++S+ F E E+++ N + Sbjct: 4 KINIRNKRARFEYELLDQFNAGIVLGGTEIKSIRLGKANITESFCEFNERGELFIVNMQV 63 Query: 71 PEYLQANRFNHYPRRNRKLLLSK 93 EY + +NH P+ RKLLL K Sbjct: 64 EEYSHGSHYNHKPKALRKLLLQK 86 >gi|330875261|gb|EGH09410.1| SsrA-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 85 Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%) Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 P R RKLLL+KRE+ +L ++V++ G V + +Y+ L K ++AL +GKK Y Sbjct: 1 THVIADPTRTRKLLLNKRELEKLTSSVQQKGYACVALSVYWKEH-LIKCEIALGKGKKEY 59 Query: 137 DKRETEKKRDWDRQKHRILREH 158 DKR TE++RD DR+ R +R Sbjct: 60 DKRHTERERDSDRELQRAVRSK 81 >gi|225012798|ref|ZP_03703232.1| SsrA-binding protein [Flavobacteria bacterium MS024-2A] gi|225003072|gb|EEG41048.1| SsrA-binding protein [Flavobacteria bacterium MS024-2A] Length = 94 Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 43/91 (47%), Positives = 61/91 (67%) Query: 68 SYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127 +I EY RFNH P+ RKLLL+K+E+ +LY V+ G+T+VP++++ N G AK+ + Sbjct: 1 MHIEEYAFGTRFNHRPKAQRKLLLNKKELKKLYKEVKNSGLTIVPLRLFINDDGFAKLRI 60 Query: 128 ALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ALA+GKK YDKRET K RD Q R+ + Sbjct: 61 ALAKGKKLYDKRETIKDRDNKVQLDRVKKNF 91 >gi|167586875|ref|ZP_02379263.1| SsrA-binding protein [Burkholderia ubonensis Bu] Length = 64 Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 33/62 (53%), Positives = 44/62 (70%), Gaps = 1/62 (1%) Query: 95 EIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRI 154 EI +L V + G TLVP+ ++ G K D+ LA+GKK +DKRETEKKRDW+R+K RI Sbjct: 1 EIKKLIGKVEQRGYTLVPLNFHYKG-GRVKCDIGLAKGKKLHDKRETEKKRDWEREKARI 59 Query: 155 LR 156 +R Sbjct: 60 MR 61 >gi|34764099|ref|ZP_00144976.1| Small protein B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886125|gb|EAA23424.1| Small protein B [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 84 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 40/58 (68%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYI 70 ++++N+KA ++Y I +EAGI L G+EVKS++ KV+I +S+ NDEI++ + Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSV 59 >gi|213613352|ref|ZP_03371178.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|289824498|ref|ZP_06544061.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 70 Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDR 149 +L++RE+ LY + R+G T+V + +Y+ K+ + +A+GKK +DKR K+R+W Sbjct: 1 MLNQRELDSLYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQHDKRSDLKEREWQL 59 Query: 150 QKHRILRE 157 K RI++ Sbjct: 60 DKARIMKN 67 >gi|124516507|gb|EAY58015.1| tmRNA-binding protein [Leptospirillum rubarum] Length = 64 Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 39/59 (66%) Query: 100 YAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 VR+ G+T+VP++IY +GL K+++AL +GK DKR+ ++R+ +R+ R+ R Sbjct: 1 MGLVRQKGLTVVPLRIYSGPRGLFKVEIALVRGKTQGDKRDAIREREANREIQRVFRSK 59 >gi|289803921|ref|ZP_06534550.1| hypothetical protein Salmonellaentericaenterica_05112 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 64 Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%) Query: 96 IHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 + LY + R+G T+V + +Y+ K+ + +A+GKK +DKR K+R+W K RI+ Sbjct: 1 LDSLYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIM 59 Query: 156 RE 157 + Sbjct: 60 KN 61 >gi|308190312|ref|YP_003923243.1| hypothetical protein MFE_07940 [Mycoplasma fermentans JER] gi|307625054|gb|ADN69359.1| hypothetical protein MFE_07940 [Mycoplasma fermentans JER] Length = 110 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%) Query: 53 DSYATFENDEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGM-TLV 111 +SY F EI+L N+ +Y R+RKLL+ K EI RL + + + G T++ Sbjct: 2 NSYCFFRKGEIFLCNAQFKQY---MLVKCDETRDRKLLMHKNEIVRLQSKLHKLGHATII 58 Query: 112 PMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRIL 155 P KIYF+ + KI++AL QG K DKRE KKRD +R + L Sbjct: 59 PSKIYFDNRSRIKIEIALVQGMKKTDKREEIKKRDNERYIKKSL 102 >gi|325184525|emb|CCA19017.1| hypothetical protein PITG_04079 [Albugo laibachii Nc14] Length = 183 Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 7/128 (5%) Query: 10 PKKVVSDNRKARYN------YHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEI 63 P +++ N +A N Y++ + + GI L +EVKSLR ++S+S+ATF +E+ Sbjct: 34 PTRILVRN-QAFLNKCRTKVYNVQKEWSLGIQLLPSEVKSLREHTGDLSNSFATFYKNEL 92 Query: 64 WLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLA 123 +L IP + P R RKLL + E+ +L + L+P + G Sbjct: 93 FLHECNIPIWRHGLIGRPEPLRPRKLLARRSELKKLQGFTKDTRAELIPTCVQVGETGWI 152 Query: 124 KIDLALAQ 131 K+ +A + Sbjct: 153 KVIVAECK 160 >gi|213586761|ref|ZP_03368587.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 61 Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%) Query: 99 LYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 +Y + R+G T+V + +Y+ K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 1 MYGRINREGYTVVALSLYWK-NAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 58 >gi|309805834|ref|ZP_07699869.1| SmpB protein [Lactobacillus iners LactinV 03V1-b] gi|308167743|gb|EFO69887.1| SmpB protein [Lactobacillus iners LactinV 03V1-b] Length = 65 Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDE 62 +K + N ++ N+KA Y+Y I +FEAGI LTGTE+KS+R ++N+ D Y Sbjct: 1 MKKKENDA---LATNKKASYDYFIKETFEAGIALTGTEIKSVRARRINLKDGYVQTYRGS 57 Query: 63 IWLTNS 68 + Sbjct: 58 AFFRKC 63 >gi|239631236|ref|ZP_04674267.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239525701|gb|EEQ64702.1| SsrA-binding protein [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 57 Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 103 VRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 R G+TLVP+++Y G AK+ + +A+GK NYDKRET K++D +R+ R L+ Sbjct: 2 TARQGVTLVPLRMYLK-HGYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKAR 56 >gi|289824499|ref|ZP_06544062.1| SsrA-binding protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 98 Score = 64.8 bits (157), Expect = 4e-09, Method: Composition-based stats. Identities = 16/46 (34%), Positives = 22/46 (47%) Query: 5 SRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVN 50 P ++ N++AR+ Y I FEAG+ L G EVK K Sbjct: 8 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKISARRKSQ 53 >gi|153839495|ref|ZP_01992162.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810] gi|149746974|gb|EDM57962.1| SsrA-binding protein [Vibrio parahaemolyticus AQ3810] Length = 52 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 108 MTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILR 156 MTL + +Y++ + KI + +A+GKK +DKR K++DW R+K R+++ Sbjct: 1 MTLTALSLYWS-RSWVKIKIGVAKGKKLHDKRTDLKEKDWAREKARVMK 48 >gi|311086567|gb|ADP66648.1| SsrA-binding protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 88 Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%) Query: 77 NRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNY 136 NRF+ P R +KLLL K EI L + G T+V + +++ K K++ LA+GK Sbjct: 4 NRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWK-KSWCKLEFGLAKGKTAQ 62 Query: 137 DKRETEKKRDWDRQKHRILRE 157 DKR KKR+W+++K +IL++ Sbjct: 63 DKRINLKKREWEQEKLKILKK 83 >gi|331005325|ref|ZP_08328712.1| hypothetical protein IMCC1989_1672 [gamma proteobacterium IMCC1989] gi|330420864|gb|EGG95143.1| hypothetical protein IMCC1989_1672 [gamma proteobacterium IMCC1989] Length = 40 Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 24/40 (60%) Query: 3 LKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVK 42 + + ++ N++AR++YHI FEAG+ L G EVK Sbjct: 1 MAKKQKTSDNTIAQNKRARFDYHIEEQFEAGLSLQGWEVK 40 >gi|309805842|ref|ZP_07699877.1| SsrA-binding protein [Lactobacillus iners LactinV 03V1-b] gi|308167751|gb|EFO69895.1| SsrA-binding protein [Lactobacillus iners LactinV 03V1-b] Length = 59 Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Query: 105 RDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + GMT++P+K+Y G AK+ + + QGKK YDKRET K+RD DR+ + Sbjct: 7 QQGMTIIPLKVYLK-HGYAKVLIGVGQGKKQYDKRETIKRRDQDRELKSKYKIR 59 >gi|42565345|gb|AAS20954.1| small protein B [Clover phyllody phytoplasma] Length = 72 Score = 62.1 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 1/70 (1%) Query: 90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDR 149 LL K EI ++ ++ + ++++P+K+YFN K L K+++ALA+GKK +DKR K D Sbjct: 1 LLQKHEIIQIKNKIKTEKLSVIPLKVYFN-KNLVKLEIALAKGKKQHDKRNALKDFDAKL 59 Query: 150 QKHRILREHN 159 + + L+ N Sbjct: 60 RIQKTLKNFN 69 >gi|118462231|ref|YP_883154.1| SsrA-binding protein [Mycobacterium avium 104] gi|118163518|gb|ABK64415.1| SsrA-binding protein [Mycobacterium avium 104] Length = 53 Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%) Query: 110 LVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 ++P+ +YF+ G K++LALA+GKK YDKR+ +RD R+ R L Sbjct: 1 MMPLSLYFSE-GKVKVELALARGKKAYDKRQDLAQRDAQREVVRQLGRR 48 >gi|94502302|ref|ZP_01308780.1| SsrA-binding protein [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|94451141|gb|EAT14088.1| SsrA-binding protein [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] Length = 85 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 47/72 (65%) Query: 80 NHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKR 139 N P+R +KLLL ++EI+ +Y + + ++P I+ N +G K+ LA+ KKNYDKR Sbjct: 11 NFNPKRVKKLLLKRKEINFIYNKINELKLNIIPTNIFLNERGYIKLIFFLAKSKKNYDKR 70 Query: 140 ETEKKRDWDRQK 151 ++ K + ++R+K Sbjct: 71 QSIKNKYFEREK 82 >gi|68171282|ref|ZP_00544683.1| SsrA-binding protein [Ehrlichia chaffeensis str. Sapulpa] gi|67999297|gb|EAM85945.1| SsrA-binding protein [Ehrlichia chaffeensis str. Sapulpa] Length = 70 Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 33/70 (47%), Positives = 52/70 (74%) Query: 90 LLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDR 149 + K++I+++ ++ DG T+VP+ +YFN KG+AK+ + + +GKK +DKRET K RDW+R Sbjct: 1 MARKKQIYKISGNIKNDGFTVVPLCLYFNDKGIAKVKVVIVKGKKLHDKRETIKTRDWNR 60 Query: 150 QKHRILREHN 159 +K RILR N Sbjct: 61 EKSRILRGGN 70 >gi|307069558|ref|YP_003878035.1| putative SsrA-binding protein [Candidatus Zinderia insecticola CARI] gi|306482818|gb|ADM89689.1| putative SsrA-binding protein [Candidatus Zinderia insecticola CARI] Length = 150 Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Query: 13 VVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPE 72 ++ N+K NY+I + EAGI+L G EVK L++ K N+ ++Y FE +EI++ N I Sbjct: 2 IIFKNKKILLNYYIKKKIEAGIILEGIEVKLLKLKKFNVDNNYIKFEGNEIYIYNLIIEY 61 Query: 73 YLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQG 132 + F +KLLL K EI ++ + G T++ + + K K +A+ + Sbjct: 62 KKEIKNFKLKKNMKKKLLLHKEEIIKIKTKYLKKGFTII-LYKIYFKKKYIKFKIAIVKR 120 Query: 133 KKNYDK 138 KK Y K Sbjct: 121 KKEYQK 126 >gi|322649250|gb|EFY45687.1| hypothetical protein SEEM675_21040 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 42 Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 23/39 (58%) Query: 119 AKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILRE 157 K+ + +A+GKK +DKR K+R+W K RI++ Sbjct: 1 KNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKN 39 >gi|312601244|gb|ADQ90499.1| SsrA-binding protein [Mycoplasma hyopneumoniae 168] Length = 68 Score = 51.7 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Query: 91 LSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQ 150 + K E+ ++ + ++P+ I + K+++ALA+GK DKR K+RD R+ Sbjct: 1 MHKHELKKILKEKITRKLAIIPLFIGQKNR-KIKLEIALAKGKTKLDKRNLIKERDQKRE 59 Query: 151 KHRILREH 158 + L+ + Sbjct: 60 AAKFLKNY 67 >gi|167399733|ref|ZP_02305251.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167050441|gb|EDR61849.1| SsrA-binding protein [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 45 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Query: 115 IYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159 +Y+ K+ + +A+GKK+ DKR+ + R+W K RI++ N Sbjct: 1 MYWK-NAWVKVKIGVAKGKKDNDKRDDIRDREWKLDKARIMKHAN 44 >gi|403947|gb|AAB01006.1| (M90060); Homology to GenBank Accession numORF-X from STRATPASEA [Mycoplasma genitalium] Length = 63 Score = 49.4 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 93 KREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQGKKNYDKRETEKKRDWDRQKH 152 +I ++ ++ ++++P K++F G K+++ LA+ KK +DKRET KK+ R+ Sbjct: 1 NMKIKQIINKKQQQSLSVIPSKVFFR-NGKIKVEIWLAKPKKKFDKRETIKKKTIRRELE 59 Query: 153 RILR 156 R Sbjct: 60 AEYR 63 >gi|321311003|ref|YP_004193332.1| SsrA-binding protein [Mycoplasma haemofelis str. Langford 1] gi|319802847|emb|CBY93493.1| SsrA-binding protein [Mycoplasma haemofelis str. Langford 1] Length = 134 Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 17/140 (12%) Query: 12 KVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIP 71 K + +NR+ Y + +E G+VL K + +V++S S+ ++ EI+L Sbjct: 5 KELLNNRRDERFYEVFDKYECGLVLNSLTRKQIFNYEVSLSGSHGWIKHGEIFLRGL--- 61 Query: 72 EYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 + N KLLL + EI ++ VR L+P +Y KI L L + Sbjct: 62 -----------TKENIKLLLHREEIDKISRLVREKKYLLIPKNLYLKNY-KVKITLLLVK 109 Query: 132 --GKKNYDKRETEKKRDWDR 149 K + K E+ K++D R Sbjct: 110 RVRKTSKAKLESIKRKDEKR 129 >gi|331007786|ref|ZP_08330901.1| hypothetical protein IMCC1989_2062 [gamma proteobacterium IMCC1989] gi|330418405|gb|EGG92956.1| hypothetical protein IMCC1989_2062 [gamma proteobacterium IMCC1989] Length = 39 Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 29/37 (78%) Query: 122 LAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + K +A+A GKK +DKR++EK++DW RQK R+++ + Sbjct: 1 MVKCKIAIAGGKKQHDKRQSEKEKDWSRQKQRVMQHN 37 >gi|207109778|ref|ZP_03243940.1| SsrA-binding protein [Helicobacter pylori HPKX_438_CA4C1] Length = 42 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 26/39 (66%) Query: 120 KGLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREH 158 + AKI +AL +GKK +DKR++ K++ +++ L+ H Sbjct: 1 RNRAKIQIALVKGKKLHDKRQSLKEKVLNKEILADLKHH 39 >gi|169836978|ref|ZP_02870166.1| hypothetical protein cdivTM_07706 [candidate division TM7 single-cell isolate TM7a] Length = 24 Score = 41.0 bits (95), Expect = 0.057, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 14/21 (66%) Query: 13 VVSDNRKARYNYHIVRSFEAG 33 V++ N+KA ++Y I EAG Sbjct: 3 VLARNKKAFHDYFIEDKLEAG 23 >gi|169840810|ref|ZP_02873923.1| hypothetical protein cdivTM_26913 [candidate division TM7 single-cell isolate TM7a] Length = 30 Score = 40.2 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 21/29 (72%) Query: 125 IDLALAQGKKNYDKRETEKKRDWDRQKHR 153 +++ LA+GKK +DKRE+ K++D R + Sbjct: 1 MEIGLAKGKKLHDKRESLKRKDIRRDISK 29 >gi|218678620|ref|ZP_03526517.1| hypothetical protein RetlC8_06944 [Rhizobium etli CIAT 894] Length = 25 Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats. Identities = 14/23 (60%), Positives = 22/23 (95%) Query: 136 YDKRETEKKRDWDRQKHRILREH 158 +DKRE+EK+RDW+RQK R+L+++ Sbjct: 2 HDKRESEKERDWNRQKSRLLKDN 24 >gi|116334962|ref|YP_802457.1| hypothetical protein CRP_060 [Candidatus Carsonella ruddii PV] gi|116235243|dbj|BAF35091.1| hypothetical protein [Candidatus Carsonella ruddii PV] Length = 116 Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 16/116 (13%) Query: 16 DNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFENDEIWLTNSYIPEYLQ 75 N+K Y I+++F AG++L ++ ++ + +NI+D YI + Sbjct: 4 KNKKILTKYFIIKTFIAGMILKSNDILIIKKNILNIND---------------YIIKLSD 48 Query: 76 ANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDLALAQ 131 N ++ LLL+KRE + + +P+++ F L K+ +++ + Sbjct: 49 NNINLINKKKKIILLLNKREQNIILYYNYNKNYKCIPIEL-FKLNFLFKLKISIVK 103 >gi|171694401|ref|XP_001912125.1| hypothetical protein [Podospora anserina S mat+] gi|170947149|emb|CAP73954.1| unnamed protein product [Podospora anserina S mat+] Length = 1284 Score = 33.6 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%) Query: 133 KKNYDKRETEKKRDWDRQKHRILREH 158 KK YDKR+ K++ +R+K + RE Sbjct: 606 KKMYDKRQD--KKEGEREKEALKRER 629 Database: nr Posted date: May 13, 2011 4:10 AM Number of letters in database: 999,999,932 Number of sequences in database: 2,987,209 Database: /data/usr2/db/fasta/nr.01 Posted date: May 13, 2011 4:17 AM Number of letters in database: 999,998,956 Number of sequences in database: 2,896,973 Database: /data/usr2/db/fasta/nr.02 Posted date: May 13, 2011 4:23 AM Number of letters in database: 999,999,979 Number of sequences in database: 2,907,862 Database: /data/usr2/db/fasta/nr.03 Posted date: May 13, 2011 4:29 AM Number of letters in database: 999,999,513 Number of sequences in database: 2,932,190 Database: /data/usr2/db/fasta/nr.04 Posted date: May 13, 2011 4:33 AM Number of letters in database: 792,586,372 Number of sequences in database: 2,260,650 Lambda K H 0.314 0.158 0.519 Lambda K H 0.267 0.0483 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,090,655,906 Number of Sequences: 13984884 Number of extensions: 114413615 Number of successful extensions: 337116 Number of sequences better than 10.0: 1987 Number of HSP's better than 10.0 without gapping: 1965 Number of HSP's successfully gapped in prelim test: 22 Number of HSP's that attempted gapping in prelim test: 332721 Number of HSP's gapped (non-prelim): 2180 length of query: 159 length of database: 4,792,584,752 effective HSP length: 121 effective length of query: 38 effective length of database: 3,100,413,788 effective search space: 117815723944 effective search space used: 117815723944 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 76 (33.6 bits)