BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780275|ref|YP_003064688.1| SsrA-binding protein
[Candidatus Liberibacter asiaticus str. psy62]
         (159 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780275|ref|YP_003064688.1| SsrA-binding protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 159

 Score =  327 bits (839), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60
           MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN
Sbjct: 1   MSLKSRGNPPKKVVSDNRKARYNYHIVRSFEAGIVLTGTEVKSLRVSKVNISDSYATFEN 60

Query: 61  DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120
           DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK
Sbjct: 61  DEIWLTNSYIPEYLQANRFNHYPRRNRKLLLSKREIHRLYAAVRRDGMTLVPMKIYFNAK 120

Query: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159
           GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN
Sbjct: 121 GLAKIDLALAQGKKNYDKRETEKKRDWDRQKHRILREHN 159


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 25.4 bits (54), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 18/25 (72%)

Query: 53  DSYATFENDEIWLTNSYIPEYLQAN 77
           ++YA++ ND I + +SY  EY++ N
Sbjct: 291 NTYASYLNDVIGIISSYTGEYIRMN 315


>gi|254780813|ref|YP_003065226.1| Maf-like protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 199

 Score = 24.3 bits (51), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 133 KKNYDKRETEKKRDWDRQK 151
           K N D+RE EKK D+  +K
Sbjct: 29  KPNIDEREMEKKMDFSERK 47


>gi|254780879|ref|YP_003065292.1| hypothetical protein CLIBASIA_03880 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 652

 Score = 23.5 bits (49), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 91  LSKREIHRLYAAVRRDGMTLVPMKIYFNAKGLAKIDL 127
           L+K EI R+    + D  T+V   IY   K L  I L
Sbjct: 317 LTKDEILRIGVVQKDDKFTIVRFSIYHKQKHLLTIAL 353


>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 22.3 bits (46), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 6   RGNPPKKVVSDNRKARYNY-HIVRSFEA 32
           RGN P  V+ D  + RY Y H+    EA
Sbjct: 403 RGNFPIAVIGDVGELRYKYEHLGNGSEA 430


>gi|254780666|ref|YP_003065079.1| Fmu (Sun) domain protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 445

 Score = 21.9 bits (45), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 105 RDGMTLVPMKIYFNAKGLAKIDLALAQGKKN 135
           +D    +P++++     L+ +DL  A G K 
Sbjct: 226 QDASASIPVQLFGTLNNLSVLDLCAAPGGKT 256


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,555
Number of Sequences: 1233
Number of extensions: 3920
Number of successful extensions: 14
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 10
length of query: 159
length of database: 328,796
effective HSP length: 67
effective length of query: 92
effective length of database: 246,185
effective search space: 22649020
effective search space used: 22649020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)