HHsearch alignment for GI: 254780276 and conserved domain: CHL00200
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional.
Probab=94.89 E-value=0.41 Score=28.70 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=103.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC----CCCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 738988868999999999999769989998672----32501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGT----TGESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~----tGE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
T Consensus 19 ~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~--~~~Pivl 96 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE--IKAPIVI 96 (263)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCCEEE
T ss_conf 88707389878999999999976999999789888866658999999999997798777899999998606--7998899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 6741027--899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
T Consensus 97 MtY~N~i~~yG~e~F~~~~~~~GvdGlIipDLP------~eE-~~~~~~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~ 164 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLP------YEE-SDYLISVCNLYNIELILLIAPT-----SSKSRIQKIA 164 (263)
T ss_pred EEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCC------HHH-HHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHH
T ss_conf 862068887388999999998499868747999------788-8999999985586216664789-----9699999999
Q ss_pred HHCCHHHHH---------HCCCC-CHH-HHHHHHHHCCCCEEECCC-CCC-CHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---------00122-113-589999735984032013-221-001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---------KDATG-KIE-LVSEQRLSCGFDFIQLSG-EDS-SALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---------K~~~~-~~~-~~~~~~~~~~~~~~v~~G-~~~-~~~~~~~~G~~G~is~~~ 208 (292)
T Consensus 165 ~~a~GFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSa 233 (263)
T CHL00200 165 RAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 728980898533655687544518799999999973699848735879999999997459999998789