HHsearch alignment for GI: 254780276 and conserved domain: PRK10415
>PRK10415 tRNA-dihydrouridine synthase B; Provisional.
Probab=92.21 E-value=1.1 Score=25.50 Aligned_cols=143 Identities=18% Similarity=0.184 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEC----------CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHHH
Q ss_conf 89999999999997699899986----------723250108999999986543110123443003----6741027899
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPA----------GTTGESSTLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRES 85 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~----------G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~~ 85 (292)
T Consensus 75 dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~--iPVTvKiRlG~~-~~~~~~ 151 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVD--VPVTLKIRTGWA-PEHRNC 151 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCC--CCEEEEEECCCC-CCHHHH
T ss_conf 99999999998876499989431899989970798365063398999999999973448--746999846888-522439
Q ss_pred HHHHHHHHHCCCCCCCEECC----CCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 99753432102443200123----43343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIP----YYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P----~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
T Consensus 152 ~~~~~~~e~aG~~~itvHgRT~~q~y~g~ad---w~~i~~vk~~~~iPvi~------NGDI~~~~da~~~l~-~tg~dgv 221 (321)
T PRK10415 152 EEIAQLAEDCGIQALTIHGRTRACLFNGEAE---YDSIRAVKQKVSIPVIA------NGDITDPLKARAVLD-YTGADAL 221 (321)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHCCCCC---HHHHHHHHHCCCCCEEE------CCCCCCHHHHHHHHH-HHCCCEE
T ss_conf 9999999856988999972213443169987---79999998547997896------589199999999998-6299999
Q ss_pred HCC---CCCHHHHHHHH
Q ss_conf 001---22113589999
Q gi|254780276|r 162 KDA---TGKIELVSEQR 175 (292)
Q Consensus 162 K~~---~~~~~~~~~~~ 175 (292)
T Consensus 222 MigRgal~nPwiF~~i~ 238 (321)
T PRK10415 222 MIGRAAQGRPWIFREIQ 238 (321)
T ss_pred EECHHHHCCCHHHHHHH
T ss_conf 97566536987799999