HHsearch alignment for GI: 254780276 and conserved domain: PRK11815
>PRK11815 tRNA-dihydrouridine synthase A; Provisional.
Probab=91.72 E-value=0.95 Score=26.05 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=106.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC----------CCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 123443003674102789999753432102443200--12343----------343178899999998753023301210
Q gi|254780276|r 67 VASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY----------NKPNRRGLLAHFGEIATTVSSPIYIYN 134 (292)
Q Consensus 67 ~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~----------~~~~~~~i~~~~~~i~~~~~~pi~iYn 134 (292)
T Consensus 61 ~~~E~Pv~vQl~G~dp~~la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK- 139 (333)
T PRK11815 61 DPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVK- 139 (333)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEE-
T ss_conf 9877987999747999999999999987398853523899868873278017870799999999999987348853578-
Q ss_pred CHHHCCCCC--CHHHHHHHHHHCCHHHHHHC----C--------C---------CCHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 011111211--10689997432030233100----1--------2---------21135899997359840320132210
Q gi|254780276|r 135 NPSRTVIEM--DVDTMAELAATYPNIVGVKD----A--------T---------GKIELVSEQRLSCGFDFIQLSGEDSS 191 (292)
Q Consensus 135 ~P~~~g~~~--~~~~l~~L~~~~pni~giK~----~--------~---------~~~~~~~~~~~~~~~~~~v~~G~~~~ 191 (292)
T Consensus 140 --~RlG~d~~d~~~~l~~f~~~~~~-aG~~~i~vH~R~a~l~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s 216 (333)
T PRK11815 140 --HRIGIDDQDSYEFLCDFVDTVAE-AGCDRFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKT 216 (333)
T ss_pred --EECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf --63167777528999999999997-599889996027877267877750587304899999997667871884599699
Q ss_pred ---HHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHCCC-CH-HHHHHHHHH-CC
Q ss_conf ---0124320334455222232-110024444431178827---99999999999999984268-93-899999998-69
Q gi|254780276|r 192 ---ALGFNAHGGVGCISVTANV-VPRICAEFQQAMIRGDYR---QALLYQDKLMPLHQALFMEP-AV-CCVKYALSR-LG 261 (292)
Q Consensus 192 ---~~~~~~~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~---~A~~l~~~l~~l~~~~~~~~-~~-~~~K~~l~~-~G 261 (292)
T Consensus 217 ~~~~~~~l~-~~DGVMiGRga~~nPwif~~id~~~~-g~~~~~~s~~ei~~~~~~y~~~~~~~g~~~~~~~rHl~~~~~G 294 (333)
T PRK11815 217 LEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELF-GEPAPVPSREEVLEAMLPYIEAHLAQGGRLNHITRHMLGLFQG 294 (333)
T ss_pred HHHHHHHHH-CCCEEEEHHHHHCCCHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 999999985-59962114867559978999999984-8999999999999999999999998499889999999998649
Q ss_pred CCCCCCCCC
Q ss_conf 889987678
Q gi|254780276|r 262 RNVSLAVRS 270 (292)
Q Consensus 262 ~~~~~~~R~ 270 (292)
T Consensus 295 ~pGak~~R~ 303 (333)
T PRK11815 295 LPGARRWRR 303 (333)
T ss_pred CCCHHHHHH
T ss_conf 987899999