HHsearch alignment for GI: 254780276 and conserved domain: TIGR00683
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=100.00 E-value=0 Score=378.60 Aligned_cols=274 Identities=25% Similarity=0.367 Sum_probs=261.4
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3001112017738988868999999999999769-989998672325010899999998654311012344300367410
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEG-SGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~g-v~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
T Consensus 1 L~G~~~ALL~~F~~~~~~~~~~LR~~~~~NI~~~k~DGLYVGGSTGE~F~~S~~E~~~~l~I~~~EAK~~I~LIA~VG~V 80 (294)
T TIGR00683 1 LKGVFAALLVSFDEDQALDKKSLRRLVRFNIDKGKVDGLYVGGSTGEAFVLSLEEKKEVLRIVKDEAKDKIKLIAQVGSV 80 (294)
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 91025334066331100437667899987310142131573563156775317889999999987302502221010520
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECHHHCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 27899997534321024432001234334317889999999875302-33012100111112111068999743203023
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS-SPIYIYNNPSRTVIEMDVDTMAELAATYPNIV 159 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~-~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~ 159 (292)
T Consensus 81 ~~~E~~~L~~~A~~~GyD~~SAVTPFYY~FSF~E~~~~Y~~II~~~~G~~M~VY~IP~L~GV~l~~~Q~~~L~~-~P~V~ 159 (294)
T TIGR00683 81 SLKEAVELAKYAKRLGYDALSAVTPFYYKFSFEEIKDYYDAIIDEADGLNMVVYSIPALSGVKLTLDQINELVK-LPKVL 159 (294)
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCE
T ss_conf 37889999998887367111203666678873677778999985248982378745320121221888888751-78721
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 31001221135899997359840320132210012432033445522223211002444443117882799999999999
Q gi|254780276|r 160 GVKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 160 giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
T Consensus 160 ~~K~T~GDlY~lE~~~~~~P~-~~~y~GyDE~~~~~~~~G~DG~IGSTyN~~G~R~~~I~~~~K~G~~~~A~~~Q~~~N~ 238 (294)
T TIGR00683 160 ALKFTAGDLYLLERLKKEYPD-LLLYAGYDEIFLSALLLGVDGAIGSTYNVNGVRARQIVKLLKEGDLAEALKLQTVTND 238 (294)
T ss_pred EEEECCCHHHHHHHHHHHCCC-CEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 452040058899999875563-0120462789887886257767655100131118889998607877899999888889
Q ss_pred HHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCCCCH
Q ss_conf 9999842689389999999-86988998767888898798
Q gi|254780276|r 240 LHQALFMEPAVCCVKYALS-RLGRNVSLAVRSPMVSTLEK 278 (292)
Q Consensus 240 l~~~~~~~~~~~~~K~~l~-~~G~~~~~~~R~Pl~~~~~~ 278 (292)
T Consensus 239 ~I~~~~~~G~y~~~K~~L~yl~~V~~~-~CR~P~~Pvd~K 277 (294)
T TIGR00683 239 LIDLLLKTGLYLTLKELLKYLDVVDVG-LCRKPFTPVDEK 277 (294)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHH
T ss_conf 999998504478999999885124667-678999852011