HHsearch alignment for GI: 254780276 and conserved domain: TIGR01037
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=94.23 E-value=0.1 Score=33.10 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCCEEE--CCCC--CCCHHHHHHHCCCCCCCCCCCCC------CCHHHHHHHHHCCCCCHHHHH
Q ss_conf 589999735984032--0132--21001243203344552222321------100244444311788279999
Q gi|254780276|r 170 LVSEQRLSCGFDFIQ--LSGE--DSSALGFNAHGGVGCISVTANVV------PRICAEFQQAMIRGDYRQALL 232 (292)
Q Consensus 170 ~~~~~~~~~~~~~~v--~~G~--~~~~~~~~~~G~~G~is~~~n~~------P~~~~~l~~~~~~gd~~~A~~ 232 (292)
T Consensus 230 ~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g~~~f~~i~~~l~~fl~~~~~~si~e 302 (308)
T TIGR01037 230 MVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGYKVFKKIIEGLIAFLKEEGFSSIEE 302 (308)
T ss_pred EHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 0000477737823468632745589999999852202200022211775244888767889998728964477