HHsearch alignment for GI: 254780276 and conserved domain: cd00408

>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=100.00  E-value=0  Score=477.64  Aligned_cols=281  Identities=43%  Similarity=0.669  Sum_probs=269.8

Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             11120177389888689999999999997699899986723250108999999986543110123443003674102789
Q gi|254780276|r    5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRE   84 (292)
Q Consensus         5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~   84 (292)
T Consensus         1 i~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~s~~~   80 (281)
T cd00408           1 VIPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE   80 (281)
T ss_pred             CCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf             94733688588969499999999999997699989968545243138999999999999998089850999578788999


Q ss_pred             HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf             99975343210244320012343343178899999998753023301210011111211106899974320302331001
Q gi|254780276|r   85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA  164 (292)
Q Consensus        85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~  164 (292)
T Consensus        81 ~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~l~~~~l~~L~-~~~nv~giK~s  159 (281)
T cd00408          81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLA-EHPNIVGIKDS  159 (281)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH-CCCCEEEEECC
T ss_conf             99999999975999899879977789999999999999855599779972775316776899999984-89998999848


Q ss_pred             CCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             22113589999735984032013221001243203344552222321100244444311788279999999999999998
Q gi|254780276|r  165 TGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQAL  244 (292)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~  244 (292)
T Consensus       160 ~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~i~~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~  239 (281)
T cd00408         160 SGDLDRLTRLIALLGPDFAVLSGDDDLLLPALALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL  239 (281)
T ss_pred             CCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCEEECHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf             89999999999975997056269668899998728981440242316999999999998789999999999999999998


Q ss_pred             HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             42689389999999869889987678888987989999999999
Q gi|254780276|r  245 FMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL  288 (292)
Q Consensus       245 ~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l  288 (292)
T Consensus       240 ~~~~~~~~~K~~l~~~G~~~g-~~R~P~~~l~-~~~~~~l~~~l  281 (281)
T cd00408         240 FKEGNPAPVKAALALLGLDAG-PVRLPLVPLS-EEERAKLEALL  281 (281)
T ss_pred             HCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCC-HHHHHHHHHHC
T ss_conf             537878999999997699999-9899999999-99999999749