HHsearch alignment for GI: 254780276 and conserved domain: cd00564

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.62  E-value=0.87  Score=26.34  Aligned_cols=161  Identities=19%  Similarity=0.196  Sum_probs=88.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHH
Q ss_conf             0177389888689999999999997699899986723250108999999986543110123-443003674102789999
Q gi|254780276|r    9 LITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGSNNTRESVE   87 (292)
Q Consensus         9 ~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~~~~~~~i~   87 (292)
T Consensus         3 ~IT~~~----~~~~~~~~~l~~~l~~gv~~iqlR-----~k~~~~~~~~~~a~~~~~~~~~~~~~liIn----------d   63 (196)
T cd00564           3 LITDRR----LDGEDLLEVVEAALKGGVTLVQLR-----EKDLSARELLELARALRELCRKYGVPLIIN----------D   63 (196)
T ss_pred             EECCCC----CCCCHHHHHHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHHHHHHHHHHHCCEEEEC----------C
T ss_conf             988986----465149999999998599999986-----799899999999999999999809979978----------8


Q ss_pred             HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH------
Q ss_conf             75343210244320012343343178899999998753023301210011111211106899974320302331------
Q gi|254780276|r   88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV------  161 (292)
Q Consensus        88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi------  161 (292)
T Consensus        64 ~~~lA~~~~~dGvHl~~---~d~~~~~~r~----~---~~~~~iiG---~S~h---~~~e~~~a~~~g~DYi~~gpvf~T  127 (196)
T cd00564          64 RVDLALAVGADGVHLGQ---DDLPVAEARA----L---LGPDLIIG---VSTH---SLEEALRAEELGADYVGFGPVFPT  127 (196)
T ss_pred             HHHHHHHHCCCEEECCC---CCCCHHHHHH----H---HCCCCEEE---ECCC---CHHHHHHHHHHCCCEEEECCCCCC
T ss_conf             69999973998795584---6689999998----7---28897588---2478---899999988709993886465578


Q ss_pred             --HCC---CCCHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHCCCCCC
Q ss_conf             --001---2211358999973598403201322-100124320334455
Q gi|254780276|r  162 --KDA---TGKIELVSEQRLSCGFDFIQLSGED-SSALGFNAHGGVGCI  204 (292)
Q Consensus       162 --K~~---~~~~~~~~~~~~~~~~~~~v~~G~~-~~~~~~~~~G~~G~i  204 (292)
T Consensus       128 ~tK~~~~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~G~~giA  176 (196)
T cd00564         128 PTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVA  176 (196)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf             9888877877889999999867999899858999999999980999999