HHsearch alignment for GI: 254780276 and conserved domain: cd02809
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.72 E-value=0.24 Score=30.35 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEE--CCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 027899997534321024432001--2343-3431788999999987530233012100111112111068999743203
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVV--IPYY-NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYP 156 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~--~P~~-~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~p 156 (292)
T Consensus 126 ~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~----~i~~l~~~~~~p~i~K------Gi-~~~~DA~~a~-~~G 193 (299)
T cd02809 126 RDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWD----DLAWLRSQWKGPLILK------GI-LTPEDALRAV-DAG 193 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH----HHHHHHHHCCCCEEEE------CC-CCHHHHHHHH-HCC
T ss_conf 9999999999999985999899970589878879999----9999998669987997------27-8899999999-859
Q ss_pred HHHHHHCCC---------C-CHHHHHHHHHHCCCCEEEC-CC---CCCCHHHHHHHCCCCCCCCC
Q ss_conf 023310012---------2-1135899997359840320-13---22100124320334455222
Q gi|254780276|r 157 NIVGVKDAT---------G-KIELVSEQRLSCGFDFIQL-SG---EDSSALGFNAHGGVGCISVT 207 (292)
Q Consensus 157 ni~giK~~~---------~-~~~~~~~~~~~~~~~~~v~-~G---~~~~~~~~~~~G~~G~is~~ 207 (292)
T Consensus 194 -~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGR 257 (299)
T cd02809 194 -ADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred -CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECH
T ss_conf -9889972887333688877899999999985467289971884753689999976998898778