HHsearch alignment for GI: 254780276 and conserved domain: cd02809

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.72  E-value=0.24  Score=30.35  Aligned_cols=115  Identities=15%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCEE--CCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCC
Q ss_conf             027899997534321024432001--2343-3431788999999987530233012100111112111068999743203
Q gi|254780276|r   80 NNTRESVELAQYAHSIGADALLVV--IPYY-NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYP  156 (292)
Q Consensus        80 ~~~~~~i~~a~~a~~~Gad~i~v~--~P~~-~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~p  156 (292)
T Consensus       126 ~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~----~i~~l~~~~~~p~i~K------Gi-~~~~DA~~a~-~~G  193 (299)
T cd02809         126 RDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWD----DLAWLRSQWKGPLILK------GI-LTPEDALRAV-DAG  193 (299)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH----HHHHHHHHCCCCEEEE------CC-CCHHHHHHHH-HCC
T ss_conf             9999999999999985999899970589878879999----9999998669987997------27-8899999999-859


Q ss_pred             HHHHHHCCC---------C-CHHHHHHHHHHCCCCEEEC-CC---CCCCHHHHHHHCCCCCCCCC
Q ss_conf             023310012---------2-1135899997359840320-13---22100124320334455222
Q gi|254780276|r  157 NIVGVKDAT---------G-KIELVSEQRLSCGFDFIQL-SG---EDSSALGFNAHGGVGCISVT  207 (292)
Q Consensus       157 ni~giK~~~---------~-~~~~~~~~~~~~~~~~~v~-~G---~~~~~~~~~~~G~~G~is~~  207 (292)
T Consensus       194 -~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGR  257 (299)
T cd02809         194 -ADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR  257 (299)
T ss_pred             -CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECH
T ss_conf             -9889972887333688877899999999985467289971884753689999976998898778