HHsearch alignment for GI: 254780276 and conserved domain: cd02811
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.08 E-value=0.59 Score=27.59 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=80.5
Q ss_pred ECCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-H
Q ss_conf 1120177389888689999-9999999976998999867232501089999999865431101234430036741027-8
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAF-VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT-R 83 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~-~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~-~ 83 (292)
T Consensus 53 ~P~~I~AMTG-G~~~~~~iN~~LA~aA~~~gi~--m~vGSq~--~al~~~~~~~sf~vvR~~-~p~~~l~aNiga~~l~~ 126 (326)
T cd02811 53 APLLISAMTG-GSEKAKEINRNLAEAAEELGIA--MGVGSQR--AALEDPELAESFTVVREA-PPNGPLIANLGAVQLNG 126 (326)
T ss_pred CCEEEECCCC-CCHHHHHHHHHHHHHHHHCCCC--EEECCHH--HHHCCCCHHHHHHHHHHH-CCCCEEEEECCCHHHCC
T ss_conf 8758875557-9755658899999999981997--7834228--875392166567899875-88762786358033045
Q ss_pred HHHHHHHHH-HHCCCCCCCEECCCC----CC---CCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf 999975343-210244320012343----34---3178899999998753023301210011111211106899974320
Q gi|254780276|r 84 ESVELAQYA-HSIGADALLVVIPYY----NK---PNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY 155 (292)
Q Consensus 84 ~~i~~a~~a-~~~Gad~i~v~~P~~----~~---~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~ 155 (292)
T Consensus 127 ~~~~~~~~ai~~l~AdaL~iHlN~~QE~~~peGDr~f~~~~~~I~~l~~~~~vPVIvKe----VG~Gis~eda~~l~-~~ 201 (326)
T cd02811 127 YGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE----VGFGISRETAKRLA-DA 201 (326)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHH-HC
T ss_conf 68999999998557885786446065400789898777899999999984799858852----47899999999999-67
Q ss_pred CHHHHHH
Q ss_conf 3023310
Q gi|254780276|r 156 PNIVGVK 162 (292)
Q Consensus 156 pni~giK 162 (292)
T Consensus 202 G-v~~Id 207 (326)
T cd02811 202 G-VKAID 207 (326)
T ss_pred C-CCEEE
T ss_conf 9-99999