HHsearch alignment for GI: 254780276 and conserved domain: cd02812
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=91.34 E-value=1.4 Score=24.85 Aligned_cols=177 Identities=20% Similarity=0.295 Sum_probs=81.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73898886899999999999976998999867232501089999999865431101234430036741027899997534
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQY 91 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~ 91 (292)
T Consensus 5 liDPdK~~~~~~l~~~---~~~sgtDai~VGGS~~~~~--~~~~~v~~i---k~~~~-~~PvilfPg~~~~---i----- 67 (219)
T cd02812 5 KLDPDKELVDEEIAKL---AEESGTDAIMVGGSDGVSS--TLDNVVRLI---KRIRR-PVPVILFPSNPEA---V----- 67 (219)
T ss_pred CCCCCCCCCHHHHHHH---HHHHCCCEEEECCCCCCHH--HHHHHHHHH---HHHCC-CCCEEEECCCHHH---C-----
T ss_conf 0589998988999999---9976999999937557447--799999999---97378-9998995798665---6-----
Q ss_pred HHHCCCCCCCEEC------CCCCCCCHHHHHHHHHHHH---HHHCCCCEEEECHHH-CC------CCCCHHHHHHHHHHC
Q ss_conf 3210244320012------3433431788999999987---530233012100111-11------211106899974320
Q gi|254780276|r 92 AHSIGADALLVVI------PYYNKPNRRGLLAHFGEIA---TTVSSPIYIYNNPSR-TV------IEMDVDTMAELAATY 155 (292)
Q Consensus 92 a~~~Gad~i~v~~------P~~~~~~~~~i~~~~~~i~---~~~~~pi~iYn~P~~-~g------~~~~~~~l~~L~~~~ 155 (292)
T Consensus 68 --s~~aDa~lf~sllNs~n~~~lig~~~~aa~~~~~~~~~~e~ip~gYiv~~-~g~~v~~v~~a~~~~~~~~~~ayAl-a 143 (219)
T cd02812 68 --SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLN-PDSTVARVTGAKTDLKPEDAAAYAL-A 143 (219)
T ss_pred --CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CCCCEEEEECCCCCCCHHHHHHHHH-H
T ss_conf --86778688687533899236778899999987431676322005789987-9981488824647999899999999-9
Q ss_pred CHHHHHH----CCCC---CHHHHHHHHHHCCCCEEECCC-CC--CCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3023310----0122---113589999735984032013-22--1001243203344552222321
Q gi|254780276|r 156 PNIVGVK----DATG---KIELVSEQRLSCGFDFIQLSG-ED--SSALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 156 pni~giK----~~~~---~~~~~~~~~~~~~~~~~v~~G-~~--~~~~~~~~~G~~G~is~~~n~~ 211 (292)
T Consensus 144 ae~lg~~~iYLEgSGa~v~~e~V~~vk~~l~~~~LivGGGIrs~e~a~~~~~AgAD~IV--vGn~i 207 (219)
T cd02812 144 AEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIV--VGNIV 207 (219)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEE--ECCCE
T ss_conf 99829938999568997999999999984679709992897999999999986999999--88722