HHsearch alignment for GI: 254780276 and conserved domain: cd03465
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=93.33 E-value=0.82 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCC--CCHHH----HHHHHHHHHHHH---CCCCEEEE
Q ss_conf 1027899997534321024432001234334--31788----999999987530---23301210
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNK--PNRRG----LLAHFGEIATTV---SSPIYIYN 134 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~--~~~~~----i~~~~~~i~~~~---~~pi~iYn 134 (292)
T Consensus 164 ~~~t~~~~~~~~~qi~aGad~i~i~d~~a~~~~ls~~~f~~f~~p~~k~i~~~~~~~~~~~ilh~ 228 (330)
T cd03465 164 EKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999999963998899835666655699999999989999999999775499836740