HHsearch alignment for GI: 254780276 and conserved domain: cd04724
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.92 E-value=0.35 Score=29.21 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
T Consensus 4 ~y~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~--~~pivl 81 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVL 81 (242)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 787377899799999999999769999997899888776589999999999976994999999999987347--988899
Q ss_pred CCCCCHHHH--HHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 674102789--9997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNNTRE--SVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~~~~--~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
T Consensus 82 M~Y~N~i~~~G~e~F~~~~~~~Gv~GviipDLP------~ee-~~~~~~~~~~~~i~~I~lvsPt-----t~~~ri~~i~ 149 (242)
T cd04724 82 MGYYNPILQYGLERFLRDAKEAGVDGLIIPDLP------PEE-AEEFREAAKEYGLDLIFLVAPT-----TPDERIKKIA 149 (242)
T ss_pred EEECHHHHHHCHHHHHHHHHHCCCCEEEECCCC------HHH-HHHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHH
T ss_conf 984457665289999999997599758706999------578-4689999986598388996898-----8789999999
Q ss_pred HHCCHHHHH---HCCCC-------C-HHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---00122-------1-1358999973598403201322---1001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---KDATG-------K-IELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---K~~~~-------~-~~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~ 208 (292)
T Consensus 150 ~~s~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv--~vGFGI~~~e~v~~~~~~aDGvIVGSa 217 (242)
T cd04724 150 ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPI--AVGFGISTPEQAAEVAKYADGVIVGSA 217 (242)
T ss_pred HHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 74798499985777778775564999999999987168974--874387999999999965999998789