HHsearch alignment for GI: 254780276 and conserved domain: cd04724

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.92  E-value=0.35  Score=29.21  Aligned_cols=181  Identities=15%  Similarity=0.163  Sum_probs=104.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r   12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA   75 (292)
Q Consensus        12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~   75 (292)
T Consensus         4 ~y~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~--~~pivl   81 (242)
T cd04724           4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVL   81 (242)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf             787377899799999999999769999997899888776589999999999976994999999999987347--988899


Q ss_pred             CCCCCHHHH--HHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf             674102789--9997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r   76 GIGSNNTRE--SVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA  152 (292)
Q Consensus        76 gv~~~~~~~--~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~  152 (292)
T Consensus        82 M~Y~N~i~~~G~e~F~~~~~~~Gv~GviipDLP------~ee-~~~~~~~~~~~~i~~I~lvsPt-----t~~~ri~~i~  149 (242)
T cd04724          82 MGYYNPILQYGLERFLRDAKEAGVDGLIIPDLP------PEE-AEEFREAAKEYGLDLIFLVAPT-----TPDERIKKIA  149 (242)
T ss_pred             EEECHHHHHHCHHHHHHHHHHCCCCEEEECCCC------HHH-HHHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHH
T ss_conf             984457665289999999997599758706999------578-4689999986598388996898-----8789999999


Q ss_pred             HHCCHHHHH---HCCCC-------C-HHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCC
Q ss_conf             320302331---00122-------1-1358999973598403201322---1001243203344552222
Q gi|254780276|r  153 ATYPNIVGV---KDATG-------K-IELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTA  208 (292)
Q Consensus       153 ~~~pni~gi---K~~~~-------~-~~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~  208 (292)
T Consensus       150 ~~s~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv--~vGFGI~~~e~v~~~~~~aDGvIVGSa  217 (242)
T cd04724         150 ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPI--AVGFGISTPEQAAEVAKYADGVIVGSA  217 (242)
T ss_pred             HHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf             74798499985777778775564999999999987168974--874387999999999965999998789