HHsearch alignment for GI: 254780276 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.91 E-value=1.5 Score=24.59 Aligned_cols=164 Identities=18% Similarity=0.126 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9999999976998999867232501089999999865431101234430036741-027899997534321024432001
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS-NNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~-~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
T Consensus 16 ~~LaaAvs~aGglG~l~~~------~~~~~~l~~~i~~~~~~~~~--pfgvnl~~~~~~~~~~~~~~~~~~~~v~~v~~~ 87 (236)
T cd04730 16 PELAAAVSNAGGLGFIGAG------YLTPEALRAEIRKIRALTDK--PFGVNLLVPSSNPDFEALLEVALEEGVPVVSFS 87 (236)
T ss_pred HHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHHHHHCCC--CEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999968985585788------89999999999999974699--724433246776368999999997699999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC-CHHHHHH-CCCC--------CHHHHHH
Q ss_conf 2343343178899999998753023301210011111211106899974320-3023310-0122--------1135899
Q gi|254780276|r 104 IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY-PNIVGVK-DATG--------KIELVSE 173 (292)
Q Consensus 104 ~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~-pni~giK-~~~~--------~~~~~~~ 173 (292)
T Consensus 88 ~----g-~p~~~v~~l~~~----g~~v-~~~v-------~s~~~A~~a~~~GaD~iv~qG~eAGGH~g~~~~~~~~lv~~ 150 (236)
T cd04730 88 F----G-PPAEVVERLKAA----GIKV-IPTV-------TSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPE 150 (236)
T ss_pred C----C-CCHHHHHHHHHC----CCEE-EEEC-------CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9----8-978999999982----9989-9958-------98999999998189989997777777889875556779999
Q ss_pred HHHHCCCCEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 997359840320132-2-100124320334455222232110
Q gi|254780276|r 174 QRLSCGFDFIQLSGE-D-SSALGFNAHGGVGCISVTANVVPR 213 (292)
Q Consensus 174 ~~~~~~~~~~v~~G~-~-~~~~~~~~~G~~G~is~~~n~~P~ 213 (292)
T Consensus 151 v~~~~~ipviaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t~ 192 (236)
T cd04730 151 VRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHHCCCEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHCC
T ss_conf 999829868965462778999999980897999553857084