HHsearch alignment for GI: 254780276 and conserved domain: cd06267
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=92.38 E-value=1.1 Score=25.64 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654311012344300-----------3674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM-----------AGIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii-----------~gv~~~~~~~~i~ 87 (292)
T Consensus 39 ~~~~~~~~~i~~l~~~~vDgiIi~~~~~-----~~~~~~~~~~~-------~iPvV~~~~~~~~~~~~~V~~D~~~a~~~ 106 (264)
T cd06267 39 EDPEKEREALELLLSRRVDGIILAPSRL-----DDELLEELAAL-------GIPVVLVDRPLDGLGVDSVGIDNRAGAYL 106 (264)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHHC-------CCCEEEEEECCCCCCCCEEEECHHHHHHH
T ss_conf 9989999999999957999999678889-----98999999986-------99889996047999987999787999999
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf 753432102443200123433431788999999987530233---01210011111211106899974320302331001
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP---IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~p---i~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
T Consensus 107 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~ 183 (264)
T cd06267 107 AVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGD--FSEESGYEAARELLASGERPTAI-FA 183 (264)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCC--CCHHHHHHHHHHHHHCCCCCCEE-EE
T ss_conf 9999987188856896389877069999999999999869998853075278--97799999999999659999899-87
Q ss_pred CCC
Q ss_conf 221
Q gi|254780276|r 165 TGK 167 (292)
Q Consensus 165 ~~~ 167 (292)
T Consensus 184 ~~D 186 (264)
T cd06267 184 AND 186 (264)
T ss_pred CCH
T ss_conf 887