Query gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 292
No_of_seqs 141 out of 4214
Neff 8.4
Searched_HMMs 39220
Date Tue May 24 13:22:29 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780276.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00674 dapA dihydrodipicoli 100.0 0 0 555.8 22.4 287 4-291 1-288 (288)
2 PRK03170 dihydrodipicolinate s 100.0 0 0 530.6 24.1 289 1-292 1-289 (292)
3 pfam00701 DHDPS Dihydrodipicol 100.0 0 0 518.5 24.1 288 2-292 2-289 (289)
4 cd00950 DHDPS Dihydrodipicolin 100.0 0 0 515.3 22.8 284 2-288 1-284 (284)
5 COG0329 DapA Dihydrodipicolina 100.0 0 0 506.2 24.5 289 1-291 4-294 (299)
6 cd00954 NAL N-Acetylneuraminic 100.0 0 0 497.4 23.3 286 2-290 1-288 (288)
7 PRK04147 N-acetylneuraminate l 100.0 0 0 495.3 23.6 286 2-291 4-290 (294)
8 cd00408 DHDPS-like Dihydrodipi 100.0 0 0 477.6 22.8 281 5-288 1-281 (281)
9 TIGR03249 KdgD 5-dehydro-4-deo 100.0 0 0 474.0 23.9 285 2-292 6-296 (296)
10 PRK03620 5-dehydro-4-deoxygluc 100.0 0 0 473.0 24.0 285 2-292 2-292 (296)
11 cd00952 CHBPH_aldolase Trans-o 100.0 0 0 463.4 24.3 288 2-292 2-307 (309)
12 TIGR02313 HpaI-NOT-DapA 2,4-di 100.0 0 0 461.1 19.0 289 2-292 1-290 (294)
13 cd00951 KDGDH 5-dehydro-4-deox 100.0 0 0 454.8 22.6 281 3-289 2-288 (289)
14 cd00953 KDG_aldolase KDG (2-ke 100.0 0 0 433.3 21.3 276 3-290 2-279 (279)
15 TIGR00683 nanA N-acetylneurami 100.0 0 0 378.6 19.5 274 2-278 1-277 (294)
16 cd00945 Aldolase_Class_I Class 98.5 3.3E-06 8.3E-11 65.8 12.2 169 19-205 10-200 (201)
17 pfam06187 DUF993 Protein of un 98.4 3E-05 7.7E-10 58.8 15.2 247 17-265 53-334 (382)
18 PRK09490 metH B12-dependent me 97.8 0.0014 3.5E-08 46.7 13.0 258 17-292 156-453 (1229)
19 cd00377 ICL_PEPM Members of th 97.5 0.0019 4.9E-08 45.7 10.5 122 20-151 82-218 (243)
20 PRK11320 prpB 2-methylisocitra 97.4 0.0044 1.1E-07 43.1 11.4 122 20-151 91-226 (292)
21 cd00958 DhnA Class I fructose- 97.2 0.0099 2.5E-07 40.5 11.3 175 20-211 19-218 (235)
22 PRK07226 fructose-bisphosphate 97.0 0.021 5.4E-07 38.1 11.0 170 21-206 38-231 (266)
23 PRK06857 consensus 96.8 0.03 7.6E-07 37.0 10.4 181 19-240 21-207 (209)
24 pfam01791 DeoC DeoC/LacD famil 96.7 0.031 7.8E-07 36.9 10.1 171 21-206 18-225 (231)
25 PRK05718 keto-hydroxyglutarate 96.7 0.062 1.6E-06 34.7 11.5 181 19-240 24-210 (212)
26 PRK08645 bifunctional homocyst 96.6 0.035 8.8E-07 36.5 9.8 150 16-178 116-286 (608)
27 COG1830 FbaB DhnA-type fructos 96.6 0.029 7.5E-07 37.0 9.3 171 20-206 41-237 (265)
28 cd02931 ER_like_FMN Enoate red 96.6 0.061 1.6E-06 34.7 10.9 21 84-104 151-171 (382)
29 PRK08782 consensus 96.6 0.091 2.3E-06 33.5 12.5 184 19-243 26-215 (219)
30 COG2513 PrpB PEP phosphonomuta 96.5 0.041 1E-06 36.0 9.8 80 21-100 92-183 (289)
31 PRK09549 mtnW 2,3-diketo-5-met 96.5 0.091 2.3E-06 33.5 11.4 118 8-133 142-265 (411)
32 TIGR02082 metH methionine synt 96.5 0.051 1.3E-06 35.3 9.9 258 18-292 142-443 (1265)
33 PRK07565 dihydroorotate dehydr 96.5 0.049 1.2E-06 35.4 9.7 88 50-139 83-177 (333)
34 PRK08104 consensus 96.3 0.12 3.1E-06 32.6 11.1 178 19-237 24-207 (212)
35 pfam01207 Dus Dihydrouridine s 96.3 0.14 3.5E-06 32.2 14.2 257 22-291 11-308 (309)
36 cd02803 OYE_like_FMN_family Ol 96.2 0.088 2.2E-06 33.6 10.0 98 5-104 16-162 (327)
37 pfam01081 Aldolase KDPG and KH 96.2 0.094 2.4E-06 33.4 10.1 173 19-232 17-195 (196)
38 PRK10550 tRNA-dihydrouridine s 96.1 0.072 1.8E-06 34.2 9.1 215 68-291 60-310 (312)
39 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.1 2.6E-06 33.1 9.7 111 26-137 24-172 (289)
40 PRK05437 isopentenyl pyrophosp 96.1 0.053 1.4E-06 35.2 8.3 145 6-162 61-215 (351)
41 pfam01207 Dus Dihydrouridine s 96.1 0.11 2.7E-06 33.0 9.9 135 19-163 63-212 (309)
42 PRK06015 keto-hydroxyglutarate 96.1 0.17 4.3E-06 31.5 11.6 179 19-238 24-208 (212)
43 cd02932 OYE_YqiM_FMN Old yello 96.0 0.052 1.3E-06 35.2 8.0 62 5-68 17-87 (336)
44 PRK10415 tRNA-dihydrouridine s 96.0 0.13 3.4E-06 32.2 10.1 258 21-290 22-319 (321)
45 PRK11858 aksA trans-homoaconit 96.0 0.088 2.2E-06 33.6 9.1 175 18-207 22-224 (378)
46 TIGR03332 salvage_mtnW 2,3-dik 96.0 0.18 4.7E-06 31.3 12.5 123 8-140 141-269 (407)
47 PRK06552 keto-hydroxyglutarate 95.9 0.18 4.6E-06 31.3 10.4 180 18-237 21-205 (209)
48 PRK08904 consensus 95.9 0.19 4.8E-06 31.2 10.4 180 19-239 19-204 (207)
49 TIGR00737 nifR3_yhdG putative 95.9 0.2 5.1E-06 31.0 14.5 259 22-288 21-332 (336)
50 TIGR03326 rubisco_III ribulose 95.8 0.093 2.4E-06 33.4 8.6 122 7-133 145-270 (412)
51 cd02801 DUS_like_FMN Dihydrour 95.8 0.15 3.7E-06 32.0 9.5 186 22-220 13-228 (231)
52 TIGR02151 IPP_isom_2 isopenten 95.7 0.044 1.1E-06 35.7 6.6 161 6-179 57-237 (349)
53 cd04733 OYE_like_2_FMN Old yel 95.7 0.13 3.2E-06 32.5 8.7 62 5-68 18-92 (338)
54 COG0042 tRNA-dihydrouridine sy 95.6 0.19 4.9E-06 31.1 9.5 198 68-270 64-299 (323)
55 TIGR02320 PEP_mutase phosphoen 95.6 0.049 1.2E-06 35.5 6.5 143 14-170 77-236 (272)
56 cd02930 DCR_FMN 2,4-dienoyl-Co 95.6 0.26 6.5E-06 30.2 11.7 98 5-104 17-158 (353)
57 pfam00016 RuBisCO_large Ribulo 95.6 0.17 4.4E-06 31.4 9.1 140 7-152 15-165 (309)
58 PRK13127 consensus 95.5 0.18 4.7E-06 31.3 9.2 183 12-208 15-229 (262)
59 TIGR01182 eda 2-dehydro-3-deox 95.5 0.27 7E-06 30.0 10.5 179 20-239 18-203 (205)
60 cd01537 PBP1_Repressors_Sugar_ 95.5 0.15 3.9E-06 31.9 8.7 145 17-167 37-187 (264)
61 PRK13140 consensus 95.5 0.28 7E-06 30.0 11.4 185 11-208 17-233 (257)
62 PRK13127 consensus 95.5 0.29 7.3E-06 29.8 14.6 83 75-161 17-119 (262)
63 cd04739 DHOD_like Dihydroorota 95.4 0.067 1.7E-06 34.4 6.5 86 50-137 81-173 (325)
64 PRK04208 rbcL ribulose bisopho 95.3 0.31 8E-06 29.6 9.9 142 7-152 160-310 (467)
65 cd02933 OYE_like_FMN Old yello 95.3 0.3 7.8E-06 29.7 9.7 58 5-67 18-86 (338)
66 PRK07114 keto-hydroxyglutarate 95.2 0.34 8.6E-06 29.3 12.1 186 19-242 25-218 (223)
67 PRK07455 keto-hydroxyglutarate 95.2 0.35 8.9E-06 29.2 10.9 179 19-238 22-206 (210)
68 pfam10566 Glyco_hydro_97 Glyco 95.0 0.15 3.9E-06 31.9 7.3 111 16-132 304-425 (643)
69 PRK13111 trpA tryptophan synth 94.9 0.27 6.9E-06 30.0 8.5 184 12-208 13-226 (256)
70 cd04724 Tryptophan_synthase_al 94.9 0.35 9E-06 29.2 9.1 181 12-208 4-217 (242)
71 pfam00682 HMGL-like HMGL-like. 94.9 0.38 9.7E-06 29.0 9.2 180 17-208 9-218 (237)
72 CHL00200 trpA tryptophan synth 94.9 0.41 1.1E-05 28.7 12.1 183 12-208 19-233 (263)
73 PRK13523 NADPH dehydrogenase N 94.9 0.41 1.1E-05 28.7 11.5 98 5-104 19-163 (337)
74 PRK13132 consensus 94.8 0.41 1E-05 28.7 9.2 180 12-208 15-225 (246)
75 cd04737 LOX_like_FMN L-Lactate 94.8 0.16 4E-06 31.8 7.0 32 72-103 126-158 (351)
76 cd00452 KDPG_aldolase KDPG and 94.7 0.46 1.2E-05 28.4 9.8 172 19-232 13-189 (190)
77 PRK09485 mmuM homocysteine met 94.7 0.47 1.2E-05 28.3 10.5 108 21-132 45-190 (308)
78 PRK08318 dihydropyrimidine deh 94.6 0.18 4.7E-06 31.3 7.0 87 52-139 82-180 (413)
79 COG3142 CutC Uncharacterized p 94.5 0.22 5.5E-06 30.7 7.2 20 84-103 74-93 (241)
80 PRK05286 dihydroorotate dehydr 94.5 0.23 5.9E-06 30.5 7.3 15 27-41 70-84 (336)
81 PRK05692 hydroxymethylglutaryl 94.4 0.38 9.8E-06 28.9 8.2 179 18-209 22-237 (287)
82 PRK09389 (R)-citramalate synth 94.4 0.44 1.1E-05 28.5 8.5 107 26-133 76-191 (487)
83 PRK07565 dihydroorotate dehydr 94.3 0.25 6.5E-06 30.2 7.1 44 79-125 83-126 (333)
84 pfam01791 DeoC DeoC/LacD famil 94.3 0.44 1.1E-05 28.5 8.3 22 83-104 19-40 (231)
85 cd02810 DHOD_DHPD_FMN Dihydroo 94.3 0.57 1.5E-05 27.7 9.2 18 78-95 78-95 (289)
86 cd06322 PBP1_ABC_sugar_binding 94.2 0.58 1.5E-05 27.7 10.4 31 17-47 37-67 (267)
87 TIGR01037 pyrD_sub1_fam dihydr 94.2 0.1 2.6E-06 33.1 5.0 63 170-232 230-302 (308)
88 pfam01070 FMN_dh FMN-dependent 94.2 0.16 4E-06 31.7 5.9 179 6-207 58-254 (301)
89 CHL00040 rbcL ribulose-1,5-bis 94.2 0.58 1.5E-05 27.6 12.9 135 11-152 172-318 (477)
90 pfam01208 URO-D Uroporphyrinog 94.1 0.48 1.2E-05 28.2 8.3 88 56-153 121-216 (337)
91 PRK13135 consensus 94.1 0.6 1.5E-05 27.5 16.7 213 12-245 21-263 (267)
92 PRK13120 consensus 94.0 0.62 1.6E-05 27.4 8.7 185 12-208 25-239 (285)
93 cd03465 URO-D_like The URO-D _ 94.0 0.64 1.6E-05 27.3 10.7 27 56-82 111-137 (330)
94 PRK07259 dihydroorotate dehydr 94.0 0.64 1.6E-05 27.3 9.2 68 70-137 91-167 (301)
95 PRK13135 consensus 94.0 0.52 1.3E-05 28.0 8.2 127 74-204 22-173 (267)
96 COG2159 Predicted metal-depend 94.0 0.5 1.3E-05 28.1 8.1 132 28-162 55-197 (293)
97 PRK13129 consensus 93.8 0.68 1.7E-05 27.1 13.9 184 12-208 23-237 (267)
98 pfam02581 TMP-TENI Thiamine mo 93.8 0.47 1.2E-05 28.3 7.7 76 9-103 3-79 (180)
99 cd04734 OYE_like_3_FMN Old yel 93.8 0.7 1.8E-05 27.0 8.6 100 5-105 17-163 (343)
100 COG5016 Pyruvate/oxaloacetate 93.7 0.71 1.8E-05 27.0 10.9 123 3-137 142-301 (472)
101 cd03307 Mta_CmuA_like MtaA_Cmu 93.7 0.71 1.8E-05 27.0 9.4 25 58-82 116-140 (326)
102 cd02809 alpha_hydroxyacid_oxid 93.7 0.24 6.2E-06 30.4 6.1 115 80-207 126-257 (299)
103 PRK08195 4-hydroxy-2-ketovaler 93.6 0.74 1.9E-05 26.8 13.9 192 16-220 19-242 (337)
104 PRK08999 hypothetical protein; 93.6 0.34 8.7E-06 29.3 6.7 46 17-67 139-184 (312)
105 cd04739 DHOD_like Dihydroorota 93.6 0.41 1E-05 28.7 7.1 44 79-125 81-124 (325)
106 PRK06252 methylcobalamin:coenz 93.6 0.76 1.9E-05 26.8 9.5 27 57-83 124-150 (339)
107 PRK13123 consensus 93.5 0.77 2E-05 26.7 9.2 182 12-208 19-230 (256)
108 COG0800 Eda 2-keto-3-deoxy-6-p 93.5 0.78 2E-05 26.7 11.5 180 19-240 22-208 (211)
109 PRK06806 fructose-bisphosphate 93.4 0.52 1.3E-05 28.0 7.4 97 19-124 26-122 (281)
110 cd03465 URO-D_like The URO-D _ 93.3 0.82 2.1E-05 26.5 10.6 56 79-134 164-228 (330)
111 PRK09195 gatY tagatose-bisphos 93.3 0.42 1.1E-05 28.6 6.8 162 18-188 25-211 (284)
112 cd02922 FCB2_FMN Flavocytochro 93.3 0.4 1E-05 28.8 6.7 33 71-103 118-151 (344)
113 PRK07998 gatY putative fructos 93.3 0.38 9.8E-06 28.9 6.5 194 18-222 25-240 (283)
114 cd06323 PBP1_ribose_binding Pe 93.2 0.85 2.2E-05 26.4 9.8 163 20-189 40-214 (268)
115 PRK13137 consensus 93.2 0.86 2.2E-05 26.4 9.3 182 13-208 30-242 (266)
116 PRK13122 consensus 93.2 0.86 2.2E-05 26.4 8.9 200 1-232 1-231 (242)
117 PRK06252 methylcobalamin:coenz 93.2 0.86 2.2E-05 26.4 9.7 56 78-133 175-236 (339)
118 CHL00162 thiG thiamin biosynth 93.1 0.65 1.7E-05 27.3 7.5 174 21-208 26-220 (267)
119 cd04728 ThiG Thiazole synthase 93.1 0.56 1.4E-05 27.7 7.2 172 22-208 20-206 (248)
120 cd03332 LMO_FMN L-Lactate 2-mo 93.1 0.49 1.3E-05 28.1 6.8 40 163-204 237-279 (383)
121 PRK12738 kbaY tagatose-bisphos 93.0 0.39 9.9E-06 28.9 6.3 82 18-105 25-106 (286)
122 PRK11197 lldD L-lactate dehydr 93.0 0.46 1.2E-05 28.4 6.6 180 7-205 72-272 (381)
123 PRK08318 dihydropyrimidine deh 93.0 0.54 1.4E-05 27.9 6.9 20 26-46 29-48 (413)
124 PRK07709 fructose-bisphosphate 93.0 0.67 1.7E-05 27.2 7.4 195 18-222 25-244 (285)
125 cd04738 DHOD_2_like Dihydrooro 93.0 0.43 1.1E-05 28.6 6.4 20 26-45 63-82 (327)
126 PRK13111 trpA tryptophan synth 92.9 0.93 2.4E-05 26.1 15.6 124 75-204 15-165 (256)
127 PRK00208 thiG thiazole synthas 92.9 0.61 1.6E-05 27.5 7.1 171 23-208 22-207 (256)
128 PRK13138 consensus 92.9 0.94 2.4E-05 26.1 14.5 187 11-208 16-233 (264)
129 TIGR03217 4OH_2_O_val_ald 4-hy 92.9 0.95 2.4E-05 26.1 13.5 193 16-221 18-242 (333)
130 PRK13125 trpA tryptophan synth 92.8 0.96 2.4E-05 26.0 11.9 210 11-245 8-244 (247)
131 cd04740 DHOD_1B_like Dihydroor 92.8 0.63 1.6E-05 27.4 7.1 69 69-137 88-164 (296)
132 cd00947 TBP_aldolase_IIB Tagat 92.8 0.58 1.5E-05 27.6 6.9 160 19-187 21-204 (276)
133 PRK12857 putative aldolase; Re 92.8 0.47 1.2E-05 28.3 6.4 81 19-105 26-106 (284)
134 PRK06801 hypothetical protein; 92.8 0.48 1.2E-05 28.2 6.4 191 18-222 25-244 (286)
135 PRK12737 gatY tagatose-bisphos 92.7 0.6 1.5E-05 27.5 6.8 162 18-188 25-211 (284)
136 CHL00200 trpA tryptophan synth 92.7 1 2.6E-05 25.9 9.7 64 74-137 20-103 (263)
137 pfam05690 ThiG Thiazole biosyn 92.6 0.62 1.6E-05 27.4 6.8 173 21-208 18-205 (246)
138 PRK08195 4-hydroxy-2-ketovaler 92.6 0.68 1.7E-05 27.1 7.0 52 80-132 141-194 (337)
139 cd04724 Tryptophan_synthase_al 92.6 1 2.6E-05 25.9 14.2 123 76-204 7-156 (242)
140 cd00564 TMP_TenI Thiamine mono 92.6 0.87 2.2E-05 26.3 7.6 161 9-204 3-176 (196)
141 TIGR02090 LEU1_arch isopropylm 92.6 0.98 2.5E-05 26.0 7.8 110 23-133 73-194 (371)
142 PRK06852 aldolase; Validated 92.5 1 2.7E-05 25.8 12.7 168 25-211 62-269 (303)
143 pfam03932 CutC CutC family. Co 92.5 0.58 1.5E-05 27.6 6.6 23 81-103 70-92 (202)
144 pfam01116 F_bP_aldolase Fructo 92.5 0.6 1.5E-05 27.5 6.6 191 18-222 23-242 (283)
145 PRK13129 consensus 92.4 1.1 2.7E-05 25.7 8.4 84 74-161 24-127 (267)
146 cd06267 PBP1_LacI_sugar_bindin 92.4 1.1 2.8E-05 25.6 8.4 134 19-167 39-186 (264)
147 pfam01702 TGT Queuine tRNA-rib 92.4 0.87 2.2E-05 26.3 7.3 17 87-103 72-88 (238)
148 cd06275 PBP1_PurR Ligand-bindi 92.3 1.1 2.9E-05 25.5 8.7 100 19-130 39-150 (269)
149 PRK04452 acetyl-CoA decarbonyl 92.3 0.94 2.4E-05 26.1 7.4 118 29-162 82-202 (322)
150 cd04734 OYE_like_3_FMN Old yel 92.2 1.1 2.9E-05 25.5 12.1 85 19-103 131-249 (343)
151 PRK10415 tRNA-dihydrouridine s 92.2 1.1 2.9E-05 25.5 15.5 143 20-175 75-238 (321)
152 TIGR03217 4OH_2_O_val_ald 4-hy 92.2 0.87 2.2E-05 26.3 7.1 45 81-126 141-185 (333)
153 cd06289 PBP1_MalI_like Ligand- 92.2 1.2 2.9E-05 25.5 9.5 164 19-191 39-216 (268)
154 PRK08610 fructose-bisphosphate 92.2 0.68 1.7E-05 27.1 6.6 83 19-105 26-109 (286)
155 PRK00112 tgt queuine tRNA-ribo 92.2 0.9 2.3E-05 26.2 7.2 18 186-203 248-265 (366)
156 PRK00115 hemE uroporphyrinogen 92.1 1.2 3E-05 25.4 9.9 24 60-83 128-151 (347)
157 pfam03060 NPD 2-nitropropane d 92.0 0.99 2.5E-05 25.9 7.2 58 6-77 12-69 (330)
158 PRK12595 bifunctional 3-deoxy- 92.0 1.2 3.1E-05 25.3 10.8 64 69-132 117-187 (360)
159 cd02940 DHPD_FMN Dihydropyrimi 92.0 0.22 5.7E-06 30.6 3.9 82 55-137 85-178 (299)
160 PRK11815 tRNA-dihydrouridine s 91.7 0.95 2.4E-05 26.1 6.9 198 67-270 61-303 (333)
161 TIGR01769 GGGP geranylgeranylg 91.7 0.4 1E-05 28.8 4.9 164 81-271 11-195 (212)
162 PRK13113 consensus 91.5 1.3 3.4E-05 25.0 16.1 185 12-208 21-235 (263)
163 PRK13133 consensus 91.5 1.3 3.4E-05 25.0 8.5 186 12-208 19-241 (267)
164 cd04740 DHOD_1B_like Dihydroor 91.5 0.97 2.5E-05 26.0 6.7 46 76-125 68-114 (296)
165 PRK01008 queuine tRNA-ribosylt 91.4 1.1 2.8E-05 25.6 7.0 11 93-103 150-160 (372)
166 cd06285 PBP1_LacI_like_7 Ligan 91.4 1.4 3.5E-05 24.9 7.8 102 19-129 39-146 (265)
167 cd02812 PcrB_like PcrB_like pr 91.3 1.4 3.6E-05 24.8 11.0 177 12-211 5-207 (219)
168 PRK13118 consensus 91.3 1.4 3.6E-05 24.8 16.1 213 12-244 21-264 (269)
169 TIGR03151 enACPred_II putative 91.2 1.1 2.7E-05 25.7 6.7 45 87-131 120-165 (307)
170 PRK13114 consensus 91.1 1.5 3.7E-05 24.7 15.9 184 12-208 17-231 (266)
171 pfam03437 BtpA BtpA family. Th 91.1 1.5 3.7E-05 24.7 10.6 189 11-208 17-229 (254)
172 cd02811 IDI-2_FMN Isopentenyl- 91.1 0.59 1.5E-05 27.6 5.3 145 6-162 53-207 (326)
173 PRK00043 thiE thiamine-phospha 91.1 1.5 3.8E-05 24.7 7.8 166 2-204 6-184 (210)
174 pfam01884 PcrB PcrB family. Th 91.0 1.5 3.8E-05 24.6 11.0 176 11-211 12-214 (231)
175 cd04735 OYE_like_4_FMN Old yel 91.0 1.5 3.8E-05 24.6 10.0 60 5-67 18-87 (353)
176 PRK13134 consensus 91.0 1.5 3.8E-05 24.6 12.4 183 12-208 23-236 (257)
177 cd04730 NPD_like 2-Nitropropan 90.9 1.5 3.9E-05 24.6 7.3 164 25-213 16-192 (236)
178 TIGR01361 DAHP_synth_Bsub phos 90.9 0.43 1.1E-05 28.6 4.4 142 68-225 23-180 (262)
179 PRK13115 consensus 90.8 1.6 4E-05 24.5 15.9 205 12-239 28-262 (269)
180 pfam01180 DHO_dh Dihydroorotat 90.8 1.6 4E-05 24.5 11.0 85 51-136 74-165 (290)
181 PRK08185 hypothetical protein; 90.7 1.3 3.4E-05 25.0 6.8 190 18-222 20-239 (283)
182 PRK13119 consensus 90.7 1.6 4.1E-05 24.4 16.1 210 12-242 19-258 (261)
183 COG2022 ThiG Uncharacterized e 90.6 1.5 3.9E-05 24.5 7.1 130 70-208 69-213 (262)
184 PRK13117 consensus 90.3 1.7 4.4E-05 24.2 16.4 185 12-208 21-236 (268)
185 PRK10653 D-ribose transporter 90.3 1.7 4.4E-05 24.2 10.1 25 20-44 67-91 (295)
186 COG0167 PyrD Dihydroorotate de 90.2 1.7 4.4E-05 24.1 7.3 95 26-126 27-122 (310)
187 cd06319 PBP1_ABC_sugar_binding 90.2 1.8 4.5E-05 24.1 10.8 31 16-46 36-66 (277)
188 cd04824 eu_ALAD_PBGS_cysteine_ 90.1 1.8 4.6E-05 24.1 7.1 34 71-104 39-72 (320)
189 cd03316 MR_like Mandelate race 90.0 1.8 4.6E-05 24.0 8.6 107 68-179 124-240 (357)
190 PRK09701 D-allose transporter 90.0 1.8 4.6E-05 24.0 14.1 50 15-74 62-111 (311)
191 cd06287 PBP1_LacI_like_8 Ligan 89.9 1.4 3.7E-05 24.7 6.5 149 33-189 54-215 (269)
192 pfam02679 ComA (2R)-phospho-3- 89.9 1.8 4.7E-05 24.0 8.9 164 51-221 23-195 (245)
193 PRK11840 bifunctional sulfur c 89.8 1.7 4.3E-05 24.3 6.7 130 70-208 137-281 (327)
194 PRK13121 consensus 89.8 1.9 4.8E-05 23.9 16.2 211 12-243 21-262 (265)
195 cd01575 PBP1_GntR Ligand-bindi 89.8 1.9 4.8E-05 23.9 11.5 128 19-161 39-181 (268)
196 PRK08673 3-deoxy-7-phosphohept 89.8 0.6 1.5E-05 27.5 4.4 113 19-132 8-162 (335)
197 cd02801 DUS_like_FMN Dihydrour 89.8 1.2 3E-05 25.4 5.9 133 19-162 64-211 (231)
198 cd06556 ICL_KPHMT Members of t 89.5 2 5.1E-05 23.7 8.3 95 29-133 26-131 (240)
199 cd06295 PBP1_CelR Ligand bindi 89.4 2 5.1E-05 23.7 7.6 129 25-168 54-196 (275)
200 TIGR01037 pyrD_sub1_fam dihydr 89.4 0.3 7.8E-06 29.7 2.6 27 199-226 213-239 (308)
201 PRK07315 fructose-bisphosphate 89.4 1.6 4.1E-05 24.4 6.3 81 19-104 26-107 (293)
202 PRK13116 consensus 89.3 2 5.2E-05 23.7 16.3 197 12-226 21-249 (278)
203 cd06270 PBP1_GalS_like Ligand 89.3 2 5.2E-05 23.7 8.8 134 19-168 39-187 (268)
204 cd06305 PBP1_methylthioribose_ 89.3 2 5.2E-05 23.7 7.1 27 18-44 38-64 (273)
205 cd06336 PBP1_ABC_ligand_bindin 89.3 2 5.2E-05 23.6 7.2 143 15-161 50-199 (347)
206 cd01541 PBP1_AraR Ligand-bindi 89.1 2.1 5.4E-05 23.5 10.7 107 19-125 39-149 (273)
207 COG2070 Dioxygenases related t 89.1 1.3 3.2E-05 25.2 5.6 22 191-212 198-219 (336)
208 cd04722 TIM_phosphate_binding 89.0 2 5.1E-05 23.7 6.6 177 22-206 12-199 (200)
209 cd03327 MR_like_2 Mandelate ra 89.0 2.1 5.5E-05 23.5 8.3 115 66-187 104-228 (341)
210 cd03329 MR_like_4 Mandelate ra 88.9 2.2 5.5E-05 23.5 9.4 92 81-179 143-240 (368)
211 COG1609 PurR Transcriptional r 88.9 2.2 5.5E-05 23.5 8.7 78 20-103 99-181 (333)
212 KOG2335 consensus 88.8 2.2 5.6E-05 23.4 7.9 187 9-210 22-237 (358)
213 TIGR00574 dnl1 DNA ligase I, A 88.8 0.75 1.9E-05 26.8 4.3 93 37-132 349-453 (705)
214 COG0159 TrpA Tryptophan syntha 88.8 2.2 5.6E-05 23.4 15.0 182 12-208 21-235 (265)
215 pfam00532 Peripla_BP_1 family. 88.7 2.2 5.6E-05 23.4 7.9 100 19-130 41-154 (281)
216 cd03322 rpsA The starvation se 88.6 2.2 5.7E-05 23.3 7.2 95 19-133 125-220 (361)
217 cd04747 OYE_like_5_FMN Old yel 88.6 2 5.2E-05 23.6 6.4 99 4-104 16-165 (361)
218 PRK05437 isopentenyl pyrophosp 88.5 1.1 2.8E-05 25.6 5.0 138 70-209 60-221 (351)
219 pfam02548 Pantoate_transf Keto 88.3 2.3 6E-05 23.2 8.7 101 29-138 30-144 (261)
220 cd06300 PBP1_ABC_sugar_binding 88.2 2.4 6.1E-05 23.2 11.7 31 16-46 41-71 (272)
221 cd03326 MR_like_1 Mandelate ra 88.2 2.4 6.1E-05 23.2 8.6 115 19-152 159-275 (385)
222 cd06321 PBP1_ABC_sugar_binding 88.2 2.4 6.1E-05 23.2 11.9 32 16-47 38-69 (271)
223 cd06320 PBP1_allose_binding Pe 88.2 2.4 6.1E-05 23.1 13.2 34 13-46 35-68 (275)
224 cd00717 URO-D Uroporphyrinogen 88.2 2.4 6.1E-05 23.1 10.2 21 60-80 118-138 (335)
225 PRK10605 N-ethylmaleimide redu 88.2 2.4 6.1E-05 23.1 9.7 60 5-67 19-88 (362)
226 pfam04131 NanE Putative N-acet 88.0 1.3 3.4E-05 25.0 5.2 21 25-45 54-74 (192)
227 pfam01261 AP_endonuc_2 Xylose 87.9 2.5 6.4E-05 23.0 9.7 123 30-156 3-145 (201)
228 TIGR02708 L_lactate_ox L-lacta 87.8 1.5 3.8E-05 24.7 5.3 43 19-62 14-56 (368)
229 cd06557 KPHMT-like Ketopantoat 87.8 2.5 6.5E-05 23.0 8.8 96 29-133 26-133 (254)
230 COG1850 RbcL Ribulose 1,5-bisp 87.7 2.6 6.5E-05 22.9 8.9 139 8-152 157-304 (429)
231 COG1820 NagA N-acetylglucosami 87.5 2.6 6.7E-05 22.9 8.9 170 18-211 70-240 (380)
232 PRK10550 tRNA-dihydrouridine s 87.5 1.3 3.4E-05 25.0 4.9 139 19-164 72-224 (312)
233 KOG0538 consensus 87.4 1 2.6E-05 25.8 4.3 23 81-103 132-154 (363)
234 COG0826 Collagenase and relate 87.3 2.4 6E-05 23.2 6.1 79 26-105 17-101 (347)
235 cd06283 PBP1_RegR_EndR_KdgR_li 87.2 2.7 6.9E-05 22.7 8.7 158 19-191 39-216 (267)
236 cd06308 PBP1_sensor_kinase_lik 87.0 2.8 7.1E-05 22.7 8.3 32 16-47 37-68 (270)
237 PRK13137 consensus 86.8 1.2 3.1E-05 25.3 4.4 62 75-137 31-112 (266)
238 PRK13124 consensus 86.8 2.9 7.3E-05 22.6 16.6 211 11-243 12-253 (257)
239 PRK08255 salicylyl-CoA 5-hydro 86.8 2.9 7.3E-05 22.6 11.1 17 87-103 560-576 (770)
240 cd06291 PBP1_Qymf_like Ligand 86.7 2.9 7.4E-05 22.5 10.8 132 19-167 39-182 (265)
241 cd06290 PBP1_LacI_like_9 Ligan 86.6 2.9 7.4E-05 22.5 10.0 157 17-191 37-214 (265)
242 cd06310 PBP1_ABC_sugar_binding 86.6 2.9 7.4E-05 22.5 11.5 28 16-43 38-65 (273)
243 COG1646 Predicted phosphate-bi 86.6 2.9 7.4E-05 22.5 9.8 171 22-211 28-223 (240)
244 pfam00290 Trp_syntA Tryptophan 86.6 2.9 7.5E-05 22.5 16.2 184 12-208 13-227 (258)
245 PRK09432 metF 5,10-methylenete 86.4 3 7.6E-05 22.4 11.1 194 19-228 36-247 (296)
246 PRK02506 dihydroorotate dehydr 86.3 3 7.7E-05 22.4 8.3 83 53-136 76-166 (308)
247 cd04729 NanE N-acetylmannosami 86.2 3 7.7E-05 22.4 7.1 158 80-259 24-198 (219)
248 cd06292 PBP1_LacI_like_10 Liga 86.2 3.1 7.8E-05 22.4 10.8 135 19-156 39-182 (273)
249 cd06284 PBP1_LacI_like_6 Ligan 86.1 3.1 7.9E-05 22.3 10.2 106 19-129 39-147 (267)
250 PRK00507 deoxyribose-phosphate 86.0 3.1 8E-05 22.3 10.3 170 17-202 17-204 (221)
251 PRK06843 inositol-5-monophosph 86.0 2.2 5.7E-05 23.4 5.4 126 67-206 138-285 (404)
252 PRK13398 3-deoxy-7-phosphohept 86.0 3.1 8E-05 22.3 7.0 93 68-164 25-142 (266)
253 PRK12330 oxaloacetate decarbox 85.9 3.2 8.1E-05 22.3 8.5 77 20-100 153-229 (499)
254 COG1902 NemA NADH:flavin oxido 85.9 3.2 8.1E-05 22.3 10.8 18 87-104 153-170 (363)
255 PRK13396 3-deoxy-7-phosphohept 85.6 3.2 8.3E-05 22.2 10.7 114 19-132 9-170 (352)
256 cd00739 DHPS DHPS subgroup of 85.6 3.3 8.3E-05 22.2 7.9 123 3-136 4-129 (257)
257 COG1856 Uncharacterized homolo 85.5 1 2.6E-05 25.8 3.5 79 19-103 39-117 (275)
258 cd01302 Cyclic_amidohydrolases 85.5 2.8 7.1E-05 22.7 5.7 118 11-133 12-134 (337)
259 PRK07534 methionine synthase I 85.4 3.3 8.5E-05 22.1 8.5 107 21-132 44-175 (335)
260 PRK13131 consensus 85.2 3.4 8.6E-05 22.0 15.6 184 12-208 15-229 (257)
261 PRK10936 periplasmic sensory p 85.2 3.4 8.7E-05 22.0 9.5 40 10-49 78-117 (340)
262 PRK00915 2-isopropylmalate syn 85.1 3.4 8.7E-05 22.0 9.1 35 19-58 23-57 (511)
263 cd03325 D-galactonate_dehydrat 85.1 3.4 8.8E-05 22.0 8.5 114 67-187 109-233 (352)
264 PRK11572 copper homeostasis pr 85.0 3.5 8.8E-05 22.0 9.6 31 261-291 213-245 (248)
265 pfam00724 Oxidored_FMN NADH:fl 85.0 3.5 8.8E-05 22.0 10.2 98 5-103 18-163 (336)
266 pfam04551 GcpE GcpE protein. I 84.9 3.5 8.9E-05 22.0 7.3 122 5-151 14-138 (345)
267 cd01536 PBP1_ABC_sugar_binding 84.9 3.5 8.9E-05 21.9 8.0 24 20-43 40-63 (267)
268 cd06296 PBP1_CatR_like Ligand- 84.8 3.5 9E-05 21.9 8.4 103 18-125 38-146 (270)
269 TIGR01858 tag_bisphos_ald clas 84.7 2.3 6E-05 23.2 5.0 31 32-67 92-122 (282)
270 PRK13585 1-(5-phosphoribosyl)- 84.6 3.2 8.2E-05 22.2 5.7 167 25-208 34-223 (240)
271 cd01391 Periplasmic_Binding_Pr 84.3 3.7 9.4E-05 21.8 10.4 146 16-167 39-191 (269)
272 PRK06512 thiamine-phosphate py 84.3 2.3 5.9E-05 23.2 4.8 71 18-103 22-94 (221)
273 cd03315 MLE_like Muconate lact 84.2 3.7 9.5E-05 21.7 8.2 102 69-179 73-180 (265)
274 PRK08637 hypothetical protein; 84.1 2.5 6.4E-05 23.0 5.0 130 13-153 14-173 (386)
275 cd06312 PBP1_ABC_sugar_binding 84.0 3.8 9.7E-05 21.7 10.2 28 18-45 40-67 (271)
276 cd04731 HisF The cyclase subun 84.0 3.8 9.7E-05 21.7 6.7 179 24-210 29-227 (243)
277 COG0134 TrpC Indole-3-glycerol 83.7 1.2 3.2E-05 25.2 3.3 65 67-135 42-115 (254)
278 PRK13957 indole-3-glycerol-pho 83.6 1.4 3.5E-05 24.9 3.4 48 83-134 61-109 (247)
279 cd06450 DOPA_deC_like DOPA dec 83.4 2.1 5.4E-05 23.5 4.3 112 36-155 58-177 (345)
280 PTZ00314 inosine-5'-monophosph 83.3 3.8 9.6E-05 21.7 5.6 115 81-207 235-371 (499)
281 cd00423 Pterin_binding Pterin 83.3 4 0.0001 21.5 8.0 122 3-136 4-129 (258)
282 PRK00230 orotidine 5'-phosphat 83.2 4.1 0.0001 21.5 6.2 12 80-91 12-23 (231)
283 cd00465 URO-D_CIMS_like The UR 83.1 4.1 0.0001 21.4 10.6 12 69-80 100-111 (306)
284 cd00331 IGPS Indole-3-glycerol 83.1 1.5 3.7E-05 24.7 3.4 161 25-208 34-203 (217)
285 PRK00278 trpC indole-3-glycero 83.0 1.3 3.4E-05 25.0 3.1 48 83-134 70-118 (261)
286 PRK11613 folP dihydropteroate 82.8 4.2 0.00011 21.4 9.7 121 3-136 18-142 (282)
287 TIGR01768 GGGP-family geranylg 82.7 2.6 6.7E-05 22.9 4.6 173 20-211 12-227 (242)
288 pfam00218 IGPS Indole-3-glycer 82.6 1.4 3.6E-05 24.8 3.2 44 84-131 69-113 (254)
289 cd07902 Adenylation_DNA_ligase 82.6 2.4 6.2E-05 23.1 4.4 15 129-143 124-138 (213)
290 PRK09140 2-dehydro-3-deoxy-6-p 82.5 4.3 0.00011 21.3 8.9 161 18-212 18-184 (206)
291 PRK01033 imidazole glycerol ph 82.4 4.4 0.00011 21.3 5.6 174 25-207 33-227 (253)
292 PRK08227 aldolase; Validated 82.4 4.4 0.00011 21.2 8.4 140 89-236 127-288 (291)
293 cd01574 PBP1_LacI Ligand-bindi 82.3 4.4 0.00011 21.2 8.3 103 19-129 40-148 (264)
294 PRK09282 pyruvate carboxylase 82.2 4.4 0.00011 21.2 17.4 18 87-104 101-118 (580)
295 PRK05567 inositol-5'-monophosp 82.2 4.3 0.00011 21.3 5.5 76 75-162 219-295 (486)
296 cd06309 PBP1_YtfQ_like Peripla 82.1 4.5 0.00011 21.2 10.1 31 17-47 37-67 (273)
297 PRK13136 consensus 82.0 4.5 0.00011 21.2 11.8 183 12-208 16-228 (253)
298 TIGR01304 IMP_DH_rel_2 IMP deh 81.7 2.1 5.4E-05 23.5 3.8 72 24-103 145-218 (376)
299 PRK05301 pyrroloquinoline quin 81.7 4.6 0.00012 21.1 6.0 81 15-104 43-123 (375)
300 TIGR02153 gatD_arch glutamyl-t 81.3 1.6 4.2E-05 24.3 3.1 212 20-238 93-352 (413)
301 pfam01487 DHquinase_I Type I 3 81.3 4.8 0.00012 21.0 9.2 75 77-152 4-80 (222)
302 cd04743 NPD_PKS 2-Nitropropane 80.9 4.9 0.00012 20.9 7.3 25 192-216 180-212 (320)
303 PRK13112 consensus 80.8 4.9 0.00013 20.9 16.2 185 12-208 22-236 (279)
304 PRK12344 putative alpha-isopro 80.6 5 0.00013 20.8 8.7 104 28-132 91-207 (530)
305 cd00537 MTHFR Methylenetetrahy 80.4 5.1 0.00013 20.8 11.7 191 20-224 13-228 (274)
306 PRK12653 fructose-6-phosphate 80.0 5.2 0.00013 20.7 6.5 180 18-220 7-196 (220)
307 PRK05211 consensus 79.8 5.3 0.00014 20.6 6.2 78 25-110 24-101 (248)
308 PRK13139 consensus 79.7 5.3 0.00014 20.6 15.0 184 12-208 20-233 (254)
309 PRK07094 biotin synthase; Prov 79.7 5.3 0.00014 20.6 12.7 77 18-102 69-145 (323)
310 PRK11064 wecC UDP-N-acetyl-D-m 79.6 4.4 0.00011 21.2 4.9 41 5-45 79-120 (415)
311 cd01539 PBP1_GGBP Periplasmic 79.6 5.4 0.00014 20.6 12.0 28 16-43 38-65 (303)
312 PRK09250 fructose-bisphosphate 79.5 5.4 0.00014 20.6 6.3 98 25-138 94-203 (348)
313 PRK01130 N-acetylmannosamine-6 79.5 5.4 0.00014 20.6 6.7 159 80-259 20-195 (222)
314 pfam04909 Amidohydro_2 Amidohy 79.2 5.5 0.00014 20.5 9.7 129 26-161 33-166 (270)
315 COG0413 PanB Ketopantoate hydr 79.1 5.6 0.00014 20.5 9.2 99 31-138 31-143 (268)
316 PRK02261 methylaspartate mutas 79.0 5.6 0.00014 20.5 7.0 88 25-121 44-132 (137)
317 cd06311 PBP1_ABC_sugar_binding 78.7 5.7 0.00015 20.4 13.4 30 16-45 41-70 (274)
318 COG2129 Predicted phosphoester 78.6 5.7 0.00015 20.4 7.5 157 13-188 8-183 (226)
319 TIGR03621 F420_MSMEG_2516 prob 78.5 5.8 0.00015 20.4 5.3 54 78-132 9-62 (295)
320 PRK10703 DNA-binding transcrip 78.3 5.9 0.00015 20.3 6.6 32 73-104 92-123 (335)
321 COG0646 MetH Methionine syntha 78.3 5.9 0.00015 20.3 10.7 130 21-151 52-212 (311)
322 PRK00311 panB 3-methyl-2-oxobu 78.0 6 0.00015 20.3 7.9 101 29-138 31-145 (266)
323 cd08039 Adenylation_DNA_ligase 77.9 5.8 0.00015 20.4 5.0 21 127-149 89-109 (235)
324 COG1453 Predicted oxidoreducta 77.3 6.2 0.00016 20.1 13.6 99 7-105 19-149 (391)
325 cd03318 MLE Muconate Lactonizi 77.1 6.2 0.00016 20.2 5.0 103 69-179 130-239 (365)
326 PRK03220 consensus 77.1 6.3 0.00016 20.1 6.4 169 24-208 33-234 (257)
327 cd06273 PBP1_GntR_like_1 This 76.9 6.4 0.00016 20.1 7.3 98 19-129 39-149 (268)
328 pfam01068 DNA_ligase_A_M ATP d 76.9 5.1 0.00013 20.8 4.5 16 127-142 101-116 (190)
329 PRK13126 consensus 76.8 6.4 0.00016 20.0 14.1 182 12-208 10-210 (237)
330 cd06294 PBP1_ycjW_transcriptio 76.7 6.4 0.00016 20.0 7.6 95 21-128 46-153 (270)
331 PRK13397 3-deoxy-7-phosphohept 76.6 6.5 0.00017 20.0 8.0 94 67-164 12-130 (250)
332 cd00502 DHQase_I Type I 3-dehy 76.4 6.6 0.00017 20.0 9.1 37 96-132 24-60 (225)
333 cd01538 PBP1_ABC_xylose_bindin 76.3 6.6 0.00017 19.9 5.1 25 19-43 39-63 (288)
334 pfam03721 UDPG_MGDP_dh_N UDP-g 75.8 6.8 0.00017 19.8 6.6 16 112-127 95-110 (185)
335 pfam04481 DUF561 Protein of un 75.8 6.8 0.00017 19.8 5.5 54 70-133 14-67 (243)
336 PRK13597 imidazole glycerol ph 75.7 6.8 0.00017 19.8 6.8 176 24-210 33-229 (252)
337 cd00578 L-fuc_L-ara-isomerases 75.6 6.9 0.00018 19.8 6.1 74 59-138 24-99 (452)
338 PRK01109 ATP-dependent DNA lig 75.4 5.9 0.00015 20.3 4.5 55 48-103 354-408 (589)
339 cd04736 MDH_FMN Mandelate dehy 75.4 7 0.00018 19.8 7.6 139 48-204 102-262 (361)
340 cd00959 DeoC 2-deoxyribose-5-p 75.2 7 0.00018 19.7 9.6 166 17-201 12-198 (203)
341 PRK06111 acetyl-CoA carboxylas 75.2 7 0.00018 19.7 6.9 27 24-50 63-90 (449)
342 cd06299 PBP1_LacI_like_13 Liga 75.1 7.1 0.00018 19.7 8.0 104 19-128 39-147 (265)
343 COG4981 Enoyl reductase domain 75.1 7.1 0.00018 19.7 7.3 135 16-162 67-218 (717)
344 PRK12331 oxaloacetate decarbox 75.1 7.1 0.00018 19.7 17.8 213 19-242 23-275 (463)
345 TIGR03558 oxido_grp_1 lucifera 75.0 5.5 0.00014 20.5 4.3 60 69-128 5-69 (323)
346 PRK10423 transcriptional repre 74.9 7.2 0.00018 19.7 8.5 25 81-105 97-121 (327)
347 pfam00282 Pyridoxal_deC Pyrido 74.8 5.4 0.00014 20.6 4.2 48 108-155 173-222 (370)
348 smart00518 AP2Ec AP endonuclea 74.7 7.2 0.00018 19.7 9.3 100 24-126 12-131 (273)
349 cd06549 GH18_trifunctional GH1 74.6 6.9 0.00018 19.8 4.7 110 8-126 4-134 (298)
350 PRK01659 consensus 74.5 7.3 0.00019 19.6 6.4 174 24-208 32-229 (252)
351 pfam01255 Prenyltransf Putativ 74.5 7.3 0.00019 19.6 8.1 103 21-125 24-138 (222)
352 cd07897 Adenylation_DNA_ligase 74.5 6.6 0.00017 19.9 4.6 16 129-144 115-130 (208)
353 PRK10812 putative metallodepen 74.4 7.3 0.00019 19.6 9.5 144 23-200 21-172 (265)
354 KOG2334 consensus 74.4 7.3 0.00019 19.6 5.8 108 22-131 93-213 (477)
355 cd07906 Adenylation_DNA_ligase 74.2 7.4 0.00019 19.6 5.2 17 127-143 98-114 (186)
356 PRK12457 2-dehydro-3-deoxyphos 74.1 7.5 0.00019 19.6 6.8 112 72-186 18-164 (281)
357 TIGR03191 benz_CoA_bzdO benzoy 74.1 6.1 0.00015 20.2 4.3 51 113-163 122-179 (430)
358 cd06346 PBP1_ABC_ligand_bindin 74.0 7.5 0.00019 19.5 8.8 24 16-39 47-71 (312)
359 cd00381 IMPDH IMPDH: The catal 73.9 7.5 0.00019 19.5 6.1 170 6-207 35-227 (325)
360 PRK07695 transcriptional regul 73.9 7.5 0.00019 19.5 8.2 69 19-103 12-80 (202)
361 PRK11177 phosphoenolpyruvate-p 73.8 7.6 0.00019 19.5 5.7 58 70-133 268-332 (575)
362 PRK13209 L-xylulose 5-phosphat 73.8 7.6 0.00019 19.5 10.2 136 23-159 22-183 (283)
363 PRK10240 undecaprenyl pyrophos 73.2 7.8 0.0002 19.4 8.1 104 21-126 23-138 (229)
364 PRK07807 inositol-5-monophosph 73.1 7.9 0.0002 19.4 5.1 50 82-134 225-275 (479)
365 PRK10014 DNA-binding transcrip 72.8 8 0.0002 19.3 9.7 51 78-135 102-152 (342)
366 cd06274 PBP1_FruR Ligand bindi 72.7 8.1 0.00021 19.3 7.0 97 20-129 40-148 (264)
367 cd06301 PBP1_rhizopine_binding 72.5 8.1 0.00021 19.3 12.0 28 17-44 38-65 (272)
368 smart00729 Elp3 Elongator prot 72.3 8.2 0.00021 19.3 5.6 20 81-100 31-50 (216)
369 PRK02615 thiamine-phosphate py 72.0 8.3 0.00021 19.2 5.3 116 82-217 154-274 (345)
370 pfam01188 MR_MLE Mandelate rac 71.9 8.3 0.00021 19.2 9.0 96 22-129 2-98 (98)
371 TIGR03542 DAPAT_plant LL-diami 71.5 5 0.00013 20.8 3.4 77 73-153 98-200 (402)
372 PRK04169 geranylgeranylglycery 71.5 8.5 0.00022 19.1 13.1 177 11-212 12-218 (229)
373 COG0106 HisA Phosphoribosylfor 71.4 8.6 0.00022 19.1 8.0 17 167-183 179-195 (241)
374 cd03321 mandelate_racemase Man 71.4 8.6 0.00022 19.1 8.8 101 71-179 131-237 (355)
375 cd06314 PBP1_tmGBP Periplasmic 71.3 8.6 0.00022 19.1 10.7 27 18-44 38-64 (271)
376 TIGR03026 NDP-sugDHase nucleot 71.3 8.6 0.00022 19.1 8.3 57 5-62 80-137 (411)
377 cd07905 Adenylation_DNA_ligase 71.2 8.6 0.00022 19.1 4.8 14 130-143 108-121 (194)
378 cd06271 PBP1_AglR_RafR_like Li 71.2 8.7 0.00022 19.1 8.6 97 20-129 44-152 (268)
379 TIGR01163 rpe ribulose-phospha 70.9 8.8 0.00022 19.0 6.4 164 19-210 9-201 (216)
380 PRK09875 putative hydrolase; P 70.9 8.8 0.00022 19.0 5.9 50 21-78 33-82 (292)
381 cd06306 PBP1_TorT-like TorT-li 70.9 8.8 0.00022 19.0 10.1 34 12-45 34-67 (268)
382 LOAD_ligase consensus 70.7 5.9 0.00015 20.3 3.6 16 128-143 90-105 (184)
383 PRK02621 consensus 70.4 9 0.00023 19.0 6.2 77 24-108 32-108 (254)
384 TIGR01302 IMP_dehydrog inosine 70.4 9 0.00023 19.0 5.2 174 17-211 171-374 (476)
385 cd07901 Adenylation_DNA_ligase 70.3 9 0.00023 19.0 4.7 13 29-41 26-38 (207)
386 PRK05198 2-dehydro-3-deoxyphos 70.0 9.2 0.00023 18.9 7.7 113 68-181 6-153 (264)
387 cd03324 rTSbeta_L-fuconate_deh 69.6 9.3 0.00024 18.8 8.1 14 170-183 229-242 (415)
388 cd06281 PBP1_LacI_like_5 Ligan 69.5 9.4 0.00024 18.8 10.3 104 19-128 39-147 (269)
389 PRK10355 xylF D-xylose transpo 69.2 9.5 0.00024 18.8 5.3 21 175-195 205-226 (330)
390 COG1831 Predicted metal-depend 68.8 9.7 0.00025 18.7 8.1 110 25-134 22-165 (285)
391 COG4464 CapC Capsular polysacc 68.6 9.7 0.00025 18.7 5.8 86 73-164 8-102 (254)
392 TIGR01949 AroFGH_arch predicte 68.3 9.9 0.00025 18.7 7.2 174 16-211 33-232 (259)
393 KOG4175 consensus 68.2 9.9 0.00025 18.7 7.6 44 82-125 79-122 (268)
394 PRK13384 delta-aminolevulinic 67.9 7.1 0.00018 19.7 3.5 35 71-105 50-84 (323)
395 TIGR03470 HpnH hopanoid biosyn 67.8 10 0.00026 18.6 5.6 40 82-122 148-187 (318)
396 PRK08649 inositol-5-monophosph 67.3 10 0.00026 18.5 5.0 22 81-102 138-159 (368)
397 cd04823 ALAD_PBGS_aspartate_ri 67.1 7.5 0.00019 19.5 3.5 34 71-104 42-75 (320)
398 PRK08636 aspartate aminotransf 67.1 10 0.00027 18.5 5.3 97 53-153 74-202 (403)
399 COG2876 AroA 3-deoxy-D-arabino 67.0 10 0.00027 18.5 10.4 96 71-177 46-148 (286)
400 PRK07178 acetyl-CoA carboxylas 66.9 10 0.00027 18.5 6.6 98 23-125 61-186 (471)
401 cd06390 PBP1_iGluR_AMPA_GluR1 66.9 9.3 0.00024 18.9 4.0 24 110-133 63-86 (364)
402 COG0274 DeoC Deoxyribose-phosp 66.9 11 0.00027 18.5 7.2 144 20-184 22-186 (228)
403 cd06282 PBP1_GntR_like_2 Ligan 66.8 11 0.00027 18.5 9.2 143 18-168 38-186 (266)
404 TIGR03278 methan_mark_10 putat 66.7 11 0.00027 18.4 8.4 119 26-163 119-247 (404)
405 cd07907 Adenylation_DNA_ligase 66.6 11 0.00027 18.4 5.7 10 80-89 10-19 (213)
406 pfam02896 PEP-utilizers_C PEP- 66.5 7.8 0.0002 19.4 3.5 62 25-89 29-96 (292)
407 PRK13802 bifunctional indole-3 66.5 6.7 0.00017 19.9 3.2 27 90-119 127-153 (695)
408 COG0113 HemB Delta-aminolevuli 66.5 7.7 0.0002 19.5 3.5 58 70-127 48-115 (330)
409 TIGR02753 sodN superoxide dism 66.5 9.4 0.00024 18.8 3.9 110 118-246 14-145 (149)
410 PRK09283 delta-aminolevulinic 66.4 7.5 0.00019 19.5 3.4 34 71-104 47-80 (321)
411 TIGR02321 Pphn_pyruv_hyd phosp 66.3 3.9 1E-04 21.6 2.0 47 78-127 161-207 (290)
412 TIGR02712 urea_carbox urea car 66.2 11 0.00028 18.4 4.8 109 38-166 47-160 (1226)
413 cd03319 L-Ala-DL-Glu_epimerase 66.0 11 0.00028 18.4 8.1 103 70-181 123-230 (316)
414 cd00384 ALAD_PBGS Porphobilino 65.7 8 0.0002 19.3 3.5 34 71-104 39-72 (314)
415 TIGR00114 lumazine-synth 6,7-d 65.7 7.6 0.00019 19.5 3.3 62 36-100 66-138 (148)
416 cd00019 AP2Ec AP endonuclease 65.6 11 0.00028 18.3 11.3 132 22-155 10-165 (279)
417 PRK02083 imidazole glycerol ph 65.2 11 0.00029 18.3 6.6 176 24-208 32-229 (253)
418 PRK13753 dihydropteroate synth 65.0 11 0.00029 18.2 7.6 119 4-136 6-128 (279)
419 cd02072 Glm_B12_BD B12 binding 65.0 11 0.00029 18.2 7.2 21 26-46 41-61 (128)
420 pfam00490 ALAD Delta-aminolevu 65.0 8.7 0.00022 19.1 3.5 34 71-104 45-78 (322)
421 COG1304 idi Isopentenyl diphos 64.9 11 0.00029 18.2 4.2 39 168-206 260-302 (360)
422 cd03328 MR_like_3 Mandelate ra 64.8 11 0.00029 18.2 7.4 39 58-96 170-209 (352)
423 COG0119 LeuA Isopropylmalate/h 64.7 12 0.00029 18.2 9.3 23 19-41 21-43 (409)
424 pfam01136 Peptidase_U32 Peptid 64.6 12 0.0003 18.2 6.6 89 22-134 2-93 (232)
425 pfam06277 EutA Ethanolamine ut 64.5 8.2 0.00021 19.3 3.3 31 7-37 48-79 (473)
426 PRK09856 fructoselysine 3-epim 64.4 12 0.0003 18.1 11.3 157 23-182 14-203 (276)
427 TIGR00430 Q_tRNA_tgt queuine t 64.3 11 0.00027 18.4 3.8 40 71-112 26-68 (415)
428 pfam02219 MTHFR Methylenetetra 64.2 12 0.0003 18.1 11.9 192 21-224 25-239 (286)
429 TIGR03617 F420_MSMEG_2256 prob 64.1 11 0.00028 18.4 3.9 71 212-288 242-316 (318)
430 pfam05913 DUF871 Bacterial pro 64.0 12 0.0003 18.1 6.7 81 20-103 11-95 (357)
431 PRK09247 ATP-dependent DNA lig 63.8 11 0.00029 18.2 3.9 12 75-86 150-161 (537)
432 PRK10799 putative hydrolase-ox 63.7 12 0.0003 18.1 4.0 52 86-137 46-100 (247)
433 COG1964 Predicted Fe-S oxidore 63.6 12 0.00031 18.1 6.0 103 20-126 56-165 (475)
434 cd06824 PLPDE_III_Yggs_like Py 63.6 12 0.0003 18.1 4.0 18 225-242 167-184 (224)
435 COG2100 Predicted Fe-S oxidore 63.6 12 0.00031 18.0 8.4 67 72-140 231-303 (414)
436 cd01544 PBP1_GalR Ligand-bindi 63.4 12 0.00031 18.0 10.1 64 34-103 51-118 (270)
437 pfam07302 AroM AroM protein. T 63.4 12 0.00031 18.0 9.3 27 25-52 77-103 (221)
438 PRK12999 pyruvate carboxylase; 63.1 12 0.00031 18.0 10.5 78 19-102 689-766 (1147)
439 cd01820 PAF_acetylesterase_lik 63.0 12 0.00031 18.0 10.1 124 7-136 2-137 (214)
440 PRK01688 histidinol-phosphate 63.0 12 0.00031 18.0 4.3 88 73-164 77-185 (355)
441 cd06288 PBP1_sucrose_transcrip 62.9 12 0.00032 18.0 9.9 108 18-129 39-148 (269)
442 PRK06207 aspartate aminotransf 62.7 12 0.00032 17.9 9.4 124 17-153 47-206 (406)
443 cd06387 PBP1_iGluR_AMPA_GluR3 62.7 9.8 0.00025 18.7 3.4 28 109-136 69-96 (372)
444 pfam05853 DUF849 Prokaryotic p 62.6 12 0.00032 17.9 10.0 44 18-62 56-99 (274)
445 cd06278 PBP1_LacI_like_2 Ligan 62.5 13 0.00032 17.9 7.6 102 23-130 42-148 (266)
446 PRK10076 pyruvate formate lyas 62.4 13 0.00032 17.9 6.5 93 50-157 18-113 (213)
447 PRK10719 eutA reactivating fac 61.9 9.7 0.00025 18.7 3.3 31 7-37 51-82 (471)
448 COG1167 ARO8 Transcriptional r 61.9 13 0.00033 17.8 5.5 175 17-200 102-309 (459)
449 cd06298 PBP1_CcpA_like Ligand- 61.7 13 0.00033 17.8 10.1 106 18-129 38-149 (268)
450 PRK02145 consensus 61.7 13 0.00033 17.8 5.9 170 24-204 33-229 (257)
451 pfam00478 IMPDH IMP dehydrogen 61.4 13 0.00033 17.8 5.1 69 82-162 221-290 (467)
452 cd01310 TatD_DNAse TatD like p 61.4 13 0.00033 17.8 9.7 142 24-200 17-168 (251)
453 cd06303 PBP1_LuxPQ_Quorum_Sens 61.3 13 0.00034 17.8 13.5 31 11-41 36-66 (280)
454 COG0020 UppS Undecaprenyl pyro 61.2 13 0.00034 17.8 8.1 106 21-127 46-162 (245)
455 TIGR01173 glmU UDP-N-acetylglu 61.1 4.7 0.00012 21.0 1.6 85 59-162 30-130 (461)
456 KOG0238 consensus 61.0 13 0.00034 17.7 5.1 146 38-197 44-199 (670)
457 PRK10128 putative aldolase; Pr 60.9 13 0.00034 17.7 6.6 68 26-103 13-80 (250)
458 cd01545 PBP1_SalR Ligand-bindi 60.9 13 0.00034 17.7 9.6 104 20-129 41-150 (270)
459 PRK04183 glutamyl-tRNA(Gln) am 60.7 13 0.00034 17.7 4.5 43 183-225 294-340 (421)
460 PRK10508 hypothetical protein; 60.6 14 0.00034 17.7 4.3 68 69-136 12-87 (333)
461 COG0107 HisF Imidazoleglycerol 60.5 14 0.00035 17.7 5.7 88 25-128 33-122 (256)
462 cd01967 Nitrogenase_MoFe_alpha 60.2 14 0.00035 17.6 7.1 37 87-123 108-146 (406)
463 PRK09989 hypothetical protein; 60.2 11 0.00027 18.4 3.3 46 85-136 17-62 (258)
464 COG0502 BioB Biotin synthase a 60.2 14 0.00035 17.6 5.4 68 80-153 84-152 (335)
465 cd00308 enolase_like Enolase-s 60.1 14 0.00035 17.6 4.0 114 58-184 82-201 (229)
466 TIGR03239 GarL 2-dehydro-3-deo 60.0 14 0.00035 17.6 4.7 68 26-103 24-91 (249)
467 cd06324 PBP1_ABC_sugar_binding 60.0 14 0.00035 17.6 12.4 26 18-43 39-66 (305)
468 PRK12833 acetyl-CoA carboxylas 59.5 14 0.00036 17.5 6.0 107 39-164 52-163 (458)
469 PRK11303 DNA-binding transcrip 59.3 14 0.00036 17.5 8.4 50 79-135 100-149 (330)
470 PRK09997 hydroxypyruvate isome 59.1 10 0.00026 18.6 3.0 20 86-105 18-37 (258)
471 cd01543 PBP1_XylR Ligand-bindi 59.0 14 0.00037 17.5 6.2 92 23-129 38-140 (265)
472 COG4100 Cystathionine beta-lya 58.8 14 0.00035 17.6 3.6 28 22-49 35-62 (416)
473 KOG2550 consensus 58.8 10 0.00026 18.6 2.9 35 173-207 284-321 (503)
474 PRK08575 5-methyltetrahydropte 58.7 9.4 0.00024 18.8 2.8 43 16-68 26-76 (320)
475 pfam01997 Translin Translin fa 58.6 10 0.00026 18.6 2.9 41 204-244 110-150 (186)
476 cd01542 PBP1_TreR_like Ligand- 58.1 15 0.00038 17.4 11.8 104 19-128 39-146 (259)
477 PRK02747 consensus 58.0 15 0.00038 17.4 6.8 79 24-110 32-110 (257)
478 cd07896 Adenylation_kDNA_ligas 57.9 15 0.00038 17.4 3.7 13 29-41 17-29 (174)
479 pfam03599 CdhD CO dehydrogenas 57.7 15 0.00038 17.3 4.3 104 34-163 67-170 (384)
480 cd00635 PLPDE_III_YBL036c_like 57.5 15 0.00039 17.3 4.2 10 230-239 170-179 (222)
481 TIGR02143 trmA_only tRNA (urac 57.2 7.3 0.00019 19.6 2.0 34 136-175 295-328 (361)
482 PRK08005 ribulose-phosphate 3- 57.1 15 0.00039 17.3 8.8 171 18-208 9-193 (210)
483 cd04732 HisA HisA. Phosphorib 57.0 15 0.00039 17.3 4.7 173 25-208 32-221 (234)
484 TIGR01244 TIGR01244 conserved 56.9 12 0.00031 18.0 3.1 53 85-141 46-98 (136)
485 pfam02126 PTE Phosphotriestera 56.9 16 0.0004 17.2 5.6 26 21-46 37-62 (308)
486 COG0054 RibH Riboflavin syntha 56.8 13 0.00033 17.8 3.2 61 86-152 61-125 (152)
487 COG0084 TatD Mg-dependent DNas 56.5 16 0.0004 17.2 11.3 141 25-200 20-172 (256)
488 TIGR01689 EcbF-BcbF capsule bi 56.4 16 0.0004 17.2 3.6 46 17-62 59-121 (126)
489 cd06338 PBP1_ABC_ligand_bindin 56.2 16 0.0004 17.2 9.0 25 16-40 51-76 (345)
490 TIGR01481 ccpA catabolite cont 56.2 11 0.00028 18.3 2.8 98 20-129 101-210 (332)
491 PRK03262 consensus 56.1 16 0.00041 17.2 4.6 81 73-157 77-176 (355)
492 cd02876 GH18_SI-CLP Stabilin-1 55.5 16 0.00041 17.1 6.7 40 87-126 99-143 (318)
493 PRK09125 DNA ligase; Provision 55.3 16 0.00042 17.1 3.8 54 52-105 125-179 (277)
494 cd06451 AGAT_like Alanine-glyo 55.1 17 0.00042 17.0 7.1 151 21-188 34-185 (356)
495 COG1105 FruK Fructose-1-phosph 54.9 17 0.00042 17.0 5.5 72 48-119 108-193 (310)
496 pfam00809 Pterin_bind Pterin b 54.8 17 0.00043 17.0 7.8 90 5-100 1-94 (208)
497 PRK09722 allulose-6-phosphate 54.8 16 0.00041 17.1 3.4 130 83-234 93-225 (227)
498 TIGR02146 LysS_fung_arch homoc 54.7 17 0.00043 17.0 7.4 84 13-100 134-219 (355)
499 PRK06247 pyruvate kinase; Prov 54.6 17 0.00043 17.0 6.5 106 25-144 176-293 (477)
500 TIGR03586 PseI pseudaminic aci 54.6 17 0.00043 17.0 7.2 106 6-132 91-198 (327)
No 1
>TIGR00674 dapA dihydrodipicolinate synthase; InterPro: IPR005263 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta-semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue . Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC, IPR005264 from INTERPRO) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Sinorhizobium meliloti protein mosA , which is involved in the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry . Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel. This family represents a subclass of dihydrodipicolinate synthase. ; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process.
Probab=100.00 E-value=0 Score=555.82 Aligned_cols=287 Identities=44% Similarity=0.677 Sum_probs=279.9
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 01112017738988868999999999999769989998672325010899999998654311012344300367410278
Q gi|254780276|r 4 GSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTR 83 (292)
Q Consensus 4 Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~ 83 (292)
|+++|++|||++|++||+++++++++|++++|+||+++.|||||..+||.||..++++.+++.++||+|||+|+|+++|+
T Consensus 1 gv~~A~iTPFk~~~~VDf~~Le~li~~~~~~G~da~V~~GTTGEs~TLs~EE~~~~i~~~~~~~~~R~pvIaG~GsN~T~ 80 (288)
T TIGR00674 1 GVITALITPFKEDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESATLSHEEHKKVIEFVVDLVKGRVPVIAGTGSNATE 80 (288)
T ss_pred CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
T ss_conf 99840533304988553889999999899707985897135588644688888999999987762877898537732589
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC
Q ss_conf 99997534321024432001234334317889999999875302330121001111121110689997432030233100
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD 163 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~ 163 (292)
|+|+++++|++.|+||+|+.+|||.||+|+++++||++|++++++|+|+||+|.|||+++++|++.||+++.+||+||||
T Consensus 81 Eai~l~~~a~~~G~dg~L~vtPyYNKP~q~Gl~~HFkaia~~~~lPiiLYNvPsRTg~~l~peTv~rLA~~~~NI~aiKE 160 (288)
T TIGR00674 81 EAIELTKFAEKLGVDGFLVVTPYYNKPTQEGLYQHFKAIAEEVDLPIILYNVPSRTGVSLEPETVKRLAEEPNNIVAIKE 160 (288)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEEE
T ss_conf 99999999986895688458875518882138999999998716988984287641017862899997301677068872
Q ss_pred CCCCHHHHHHHHHHCC-CCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 1221135899997359-840320132210012432033445522223211002444443117882799999999999999
Q gi|254780276|r 164 ATGKIELVSEQRLSCG-FDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ 242 (292)
Q Consensus 164 ~~~~~~~~~~~~~~~~-~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~ 242 (292)
++||++++.+++...+ ++|.+|+|+|...++.+.+|++|+||.++|++|+.+++|++.+.+||+++|+++|+||.|+.+
T Consensus 161 a~g~l~~~~~i~~~~p~~dF~vlsGDD~l~l~~~~~Gg~GVISV~~N~~P~~~~emv~~a~~G~~~~A~EIh~kL~~L~~ 240 (288)
T TIGR00674 161 ATGNLERISEIKAITPDDDFVVLSGDDALTLPILALGGKGVISVTSNVAPKLMKEMVENALEGDFAEAREIHQKLMPLFK 240 (288)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 68888999999986689853888478611369998189616730055568999999999853897899999987888988
Q ss_pred HHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9842689389999999869889987678888987989999999999855
Q gi|254780276|r 243 ALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERL 291 (292)
Q Consensus 243 ~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~l 291 (292)
++|..+||.++|++|+++|++.+..+|+||...+ +|.+.+++++|+++
T Consensus 241 ~LF~etNPIPVK~Al~~~Gl~~~~~~RLPL~~~s-~~~~~~l~~vL~~l 288 (288)
T TIGR00674 241 ALFIETNPIPVKTALALLGLIEGDELRLPLTELS-EEHRKKLRDVLKSL 288 (288)
T ss_pred HHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHC
T ss_conf 7528889878999999738745787888988688-31567899998509
No 2
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=100.00 E-value=0 Score=530.62 Aligned_cols=289 Identities=49% Similarity=0.744 Sum_probs=280.2
Q ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 93001112017738988868999999999999769989998672325010899999998654311012344300367410
Q gi|254780276|r 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 1 ~~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
||+|||++++|||++||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++++++|+||++||++.
T Consensus 1 ~f~Gv~~a~~TPf~~dg~iD~~~l~~~v~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~ 80 (292)
T PRK03170 1 MFGGSITALVTPFKEDGSVDFAALRKLVDYQIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSN 80 (292)
T ss_pred CCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 99705160567778896959999999999999779999996832414112899999999999998738971288437876
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 27899997534321024432001234334317889999999875302330121001111121110689997432030233
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
+|+++++++++|+++|||+++++||||++++++++++||++|++++++|+++||+|.+||++++++++.+|+ ++|||+|
T Consensus 81 ~t~~~i~~a~~A~~~Gadav~v~~P~y~~~s~~~l~~~f~~ia~~~~~Pi~lYn~P~~tg~~l~~~~l~~L~-~~~nv~g 159 (292)
T PRK03170 81 STAEAIELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATDLPIILYNVPGRTGVDILPETVARLA-EHPNIVG 159 (292)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH-CCCCEEE
T ss_conf 799999999989875999899617768899999999999999863599769873786327676999999981-7899899
Q ss_pred HHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10012211358999973598403201322100124320334455222232110024444431178827999999999999
Q gi|254780276|r 161 VKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 (292)
Q Consensus 161 iK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l 240 (292)
||++++|+.++.++++..+++|.+++|.|..+++.+..|++|++++++|++|++++++|+++++||+++|+++|+++.|+
T Consensus 160 iKdss~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~Ga~G~is~~~n~~P~~~~~i~~~~~~gd~~~A~~lq~~~~~l 239 (292)
T PRK03170 160 IKEATGDLERVSELRELCPDDFAVYSGDDALALPFLALGGVGVISVTANVAPKEMAEMCDAALAGDFAEAREIHDRLLPL 239 (292)
T ss_pred EEECCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99699999999999986698736745848999999994398699844764489999999999879999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9998426893899999998698899876788889879899999999998559
Q gi|254780276|r 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 241 ~~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
++.++..++++++|++|+++|++.| ++|+|+.++ +++++++|+++|+++|
T Consensus 240 ~~~~~~~~~~~~~K~~l~~~G~~~g-~~R~Pl~~l-~~~e~~~l~~~l~~~G 289 (292)
T PRK03170 240 HKALFIEPNPIPVKAALSLLGLIEG-ELRLPLVPL-SEENKEKLRAALKAAG 289 (292)
T ss_pred HHHHHCCCCHHHHHHHHHHCCCCCC-CCCCCCCCC-CHHHHHHHHHHHHHCC
T ss_conf 9999437788999999997699999-989999999-9999999999999868
No 3
>pfam00701 DHDPS Dihydrodipicolinate synthetase family. This family has a TIM barrel structure.
Probab=100.00 E-value=0 Score=518.46 Aligned_cols=288 Identities=44% Similarity=0.721 Sum_probs=279.6
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 30011120177389888689999999999997699899986723250108999999986543110123443003674102
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNN 81 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~ 81 (292)
|+|||++++||||+||+||+++++++++|++++||+|++++|||||+++||.+||+++++.+++++++|+|||+||++.+
T Consensus 2 l~Gi~~a~~TPF~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~v~~~~~~~~~~~~pvi~gv~~~s 81 (289)
T pfam00701 2 FEGLITALVTPFDTDGRLDEEALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQLIEITVDEAKGRIPVIAGTGSNS 81 (289)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCC
T ss_conf 87684526677896859699999999999997799999978364031138899999999999998199862863788878
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 78999975343210244320012343343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
|+++++++++|+++|+|++|++||+|++++++++++||++|++++++||++||+|.++|++++++++.+|+ ++|||+||
T Consensus 82 t~~~i~~a~~A~~~Gad~i~v~pP~y~~~~~~~i~~~~~~va~a~~lPi~iYn~P~~tg~~l~~~~l~~L~-~~~~i~gi 160 (289)
T pfam00701 82 TREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHFKAIAAATDLPVILYNVPSRTGQDLTPETIERLA-ECPNVVGV 160 (289)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH-CCCCEEEE
T ss_conf 99999999999974999788779988899999999999999831599779971565403367999999982-68998999
Q ss_pred HCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 00122113589999735984032013221001243203344552222321100244444311788279999999999999
Q gi|254780276|r 162 KDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLH 241 (292)
Q Consensus 162 K~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~ 241 (292)
|++++|+.++.++++..+++|.+++|.|.++++.+..|++|++++++|++|+.++++|+++++||+++|+++|+++.|++
T Consensus 161 K~ss~~~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~Ga~G~i~~~~n~~P~~~~~i~~~~~~gd~~~A~~l~~~l~~l~ 240 (289)
T pfam00701 161 KDAVGDLERMENIRKRAGPDFTILSGDDETALSYLSLGADGVISVTSNIAPKLMRDIYRALKNGDFATAALLNEKLLPLM 240 (289)
T ss_pred EECCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCEEEEEHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 96998999999999966998245069489999998668987998415405999999999998779999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 998426893899999998698899876788889879899999999998559
Q gi|254780276|r 242 QALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 242 ~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
++++..++++++|++|+++|++.+ ++|+|+.++ +++++++|+++|+++|
T Consensus 241 ~~~~~~~~~~~~K~~l~~~G~~~g-~~R~Pl~~l-~~~~~~~l~~~l~~lG 289 (289)
T pfam00701 241 KILFAEPNPIPVKTALQLLGLDVG-PCRLPLTPL-SEEEREELDALLKALG 289 (289)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCC-CCCCCCCCC-CHHHHHHHHHHHHHCC
T ss_conf 999547879999999997799999-989798999-9999999999999568
No 4
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=100.00 E-value=0 Score=515.27 Aligned_cols=284 Identities=49% Similarity=0.724 Sum_probs=274.3
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 30011120177389888689999999999997699899986723250108999999986543110123443003674102
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNN 81 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~ 81 (292)
|+||+|+++||||+||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++++++|+|||+||++.+
T Consensus 1 f~Gv~~~~~TPf~~dg~iD~~~l~~~v~~l~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~ 80 (284)
T cd00950 1 FGGSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNN 80 (284)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 98456766667887869699999999999997699989968435124248999999999999997189750775078778
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 78999975343210244320012343343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
|+++++++++|+++|||++|++||+|++++++++++||++|++++++||++||+|.++|++++++++.+|+ ++|||+|+
T Consensus 81 t~~~i~~a~~A~~~Gadai~v~pP~y~~~s~~~l~~~~~~ia~a~~lPi~lYn~P~~tg~~l~~~~l~~L~-~~pnv~gi 159 (284)
T cd00950 81 TAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNVPGRTGVNIEPETVLRLA-EHPNIVGI 159 (284)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH-CCCCEEEE
T ss_conf 99999999999983999899626657897999999999999755599779873764116788889999984-79998999
Q ss_pred HCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 00122113589999735984032013221001243203344552222321100244444311788279999999999999
Q gi|254780276|r 162 KDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLH 241 (292)
Q Consensus 162 K~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~ 241 (292)
|++++|+.++.++++..+++|.+++|.|.++++.+..|++|++++++|++|+.++++|+++++||+++|+++|+++.|++
T Consensus 160 K~ss~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~Ga~G~i~~~~n~~P~~~~~l~~a~~~gd~~~A~~l~~~~~~l~ 239 (284)
T cd00950 160 KEATGDLDRVSELIALCPDDFAVLSGDDALTLPFLALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLI 239 (284)
T ss_pred ECCCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHCCCEEEEEEHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 85889899999999866987546448689999999954996998531027899999999998789999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99842689389999999869889987678888987989999999999
Q gi|254780276|r 242 QALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL 288 (292)
Q Consensus 242 ~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l 288 (292)
+.++..++++++|++|+++|++.| ++|+|+.+++ ++++++|+++|
T Consensus 240 ~~~~~~~~~~~~K~~l~~~G~~~g-~~R~Pl~~l~-~ee~~~l~~~L 284 (284)
T cd00950 240 KALFAEPNPIPVKAALALLGLISG-ELRLPLVPLS-EELRAKLRAAL 284 (284)
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCC-HHHHHHHHHCC
T ss_conf 999658788999999997699999-9798999999-99999999619
No 5
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=0 Score=506.17 Aligned_cols=289 Identities=46% Similarity=0.679 Sum_probs=276.9
Q ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 93001112017738988868999999999999769989998672325010899999998654311012344300367410
Q gi|254780276|r 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 1 ~~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
+|+|++++++|||++||+||+++++++++|++++|++||+++|||||+++||.+||.++++.+++++++|+|||+|++++
T Consensus 4 ~~~Gvi~a~vTPF~~dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~ 83 (299)
T COG0329 4 KFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSN 83 (299)
T ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 66874012038998999839999999999999849988997986657221699999999999999968977789862877
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 27899997534321024432001234334317889999999875302330121001111121110689997432030233
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
+|+++++++|+|++.|+||+|+.||||++++++++++||+.|++++++|+++||+|.++|.++++|++.+|++ +|||+|
T Consensus 84 ~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~P~~tg~~l~~e~i~~la~-~~nivg 162 (299)
T COG0329 84 STAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNIVG 162 (299)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHC-CCCEEE
T ss_conf 7999999999999709999998489788989799999999999851899899978752489999999999827-898899
Q ss_pred HHCCCCCHHHHHHHHHHCCC-CEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 10012211358999973598-40320132210012432033445522223211002444443117882799999999999
Q gi|254780276|r 161 VKDATGKIELVSEQRLSCGF-DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 161 iK~~~~~~~~~~~~~~~~~~-~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
+||+++|+.++.+++...+. +|.+++|.|+++++.+.+|++|++|+++|++|++++++++++++||+++|+++|+++.|
T Consensus 163 iKd~~gd~~~~~~~~~~~~~~~f~v~~G~d~~~~~~~~~G~~G~is~~~N~~p~~~~~l~~~~~~g~~~~A~~l~~~l~~ 242 (299)
T COG0329 163 VKDSSGDLDRLEEIIAALGDRDFIVLSGDDELALPALLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLLP 242 (299)
T ss_pred EEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCEEEECCCHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98478899999999986487662898266588889986779858841001279999999999987899999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHC
Q ss_conf 99998426893899999998698899876788889879899999-99999855
Q gi|254780276|r 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIA-IDQALERL 291 (292)
Q Consensus 240 l~~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~-i~~~l~~l 291 (292)
++++++..++++.+|++|+++|...++.+|+|+.+++++ +.+. +++.++..
T Consensus 243 l~~~~~~~~~~~~iK~~l~~~G~~~~~~~R~Pl~~l~~~-~~~~~~~~~~~~~ 294 (299)
T COG0329 243 LIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEE-EREKVLEAALAAL 294 (299)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHH
T ss_conf 999986257848999999976998898778999999989-9999999999875
No 6
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=100.00 E-value=0 Score=497.38 Aligned_cols=286 Identities=28% Similarity=0.387 Sum_probs=274.8
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 30011120177389888689999999999997-69989998672325010899999998654311012344300367410
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQIT-EGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~-~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
||||+++++||||+||+||+++++++++|+++ +|++|++++|+|||+++||.+||.++++.+++++++|+||++||++.
T Consensus 1 lkGv~~~~~TPF~~dg~iD~~~~~~~i~~li~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~ 80 (288)
T cd00954 1 LKGLIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSL 80 (288)
T ss_pred CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 94576401277898859799999999999998779989997935425213899999999999999728986087358864
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 2789999753432102443200123433431788999999987530-233012100111112111068999743203023
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIV 159 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~ 159 (292)
||+++++++|+|+++|||+++++||+|+++++++++.||+++++++ ++|+++||+|.++|++++++++.+|+ ++|||+
T Consensus 81 s~~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~~~~~~~i~~~~~~~piiiYn~P~~tg~~l~~~~l~~L~-~~~~vv 159 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHIPALTGVNLTLEQFLELF-EIPNVI 159 (288)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHH-CCCCEE
T ss_conf 5999999999998649786773799887999799999999999857799654321765237689999999996-368978
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 31001221135899997359840320132210012432033445522223211002444443117882799999999999
Q gi|254780276|r 160 GVKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 160 giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
|||++++|+.++.++++..++++.+++|.|.++++.+..|++|++++++|++|+.++++|+++++||+++|+++|+++.|
T Consensus 160 giK~s~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~~~~Ga~G~i~~~~n~~p~~~~~i~~~~~~gd~~~A~~l~~~l~~ 239 (288)
T cd00954 160 GVKFTATDLYDLERIRAASPEDKLVLNGFDEMLLSALALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVIND 239 (288)
T ss_pred EEEECCCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99978799999999999769982461695799999998699899957678679999999999988699999999999999
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 999984268938999999986988998767888898798999999999985
Q gi|254780276|r 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALER 290 (292)
Q Consensus 240 l~~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~ 290 (292)
+++.++..+.++.+|++|+++|+. +++||+|+.+++ ++++++|++++++
T Consensus 240 ~~~~~~~~~~~~~~K~~l~~~G~~-~g~~R~Pl~~l~-~~~~~~l~~l~~k 288 (288)
T cd00954 240 VITVLIKNGLYPTLKAILRLMGLD-AGPCRLPLRKVT-EKALAKAKELAAK 288 (288)
T ss_pred HHHHHHCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCC-HHHHHHHHHHHCC
T ss_conf 999998169899999999977999-999898999999-9999999999667
No 7
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=100.00 E-value=0 Score=495.35 Aligned_cols=286 Identities=27% Similarity=0.410 Sum_probs=273.0
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 30011120177389888689999999999997-69989998672325010899999998654311012344300367410
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQIT-EGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~-~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
|+|||++++|||++||+||+++++++++|+++ +|++||+++|||||+++||.+||+++++.+++.+++|+||++||++.
T Consensus 4 l~Gv~~~~~TPF~~dg~iD~~~l~~~v~~~i~~~Gv~Gi~~~GstGE~~~Ls~~Er~~l~~~~~~~~~~r~pvi~gv~~~ 83 (294)
T PRK04147 4 LKGVYAALLTPFDEDGQIDEQGLRQLVRFNIEKQGIDGLYVGGSTGEAFLLSTEERKQVLEIVAEEAKGKIKLIAQVGSV 83 (294)
T ss_pred CEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 80655504367896859699999999999998779989997951316434899999999999999818973276347888
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 27899997534321024432001234334317889999999875302330121001111121110689997432030233
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
||+++++++++|+++|+|+++++||+|++++++++++||++|++++++||++||+|.++|++++++++.+|+ ++|||+|
T Consensus 84 st~~ai~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~va~a~~~pi~iYn~P~~tg~~~~~~~l~~L~-~~~~i~g 162 (294)
T PRK04147 84 NTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSADNPMIVYNIPALTGVNLSLDQFNELF-TLPKIIG 162 (294)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHH-CCCCEEE
T ss_conf 889999999999975998899727867789989999999999850499778875675416788999999995-6899889
Q ss_pred HHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10012211358999973598403201322100124320334455222232110024444431178827999999999999
Q gi|254780276|r 161 VKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 (292)
Q Consensus 161 iK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l 240 (292)
||++++|+.++.++++..++. .+++|+|..+++.+..|++|++++++|++|++++++|+++++||+++|+++|.++.++
T Consensus 163 iK~s~~d~~~~~~i~~~~~~~-~v~~G~d~~~~~~~~~Ga~G~i~~~~n~~p~~~~~l~~~~~~gd~~~A~~l~~~~~~~ 241 (294)
T PRK04147 163 VKQTAGDLYQLERIRKAFPDK-LIYNGFDEMFLSGLLAGADGAIGSTYNVNGWRARQIFEAAKAGDIQEAQELQHECNDV 241 (294)
T ss_pred EEECCCCHHHHHHHHHHCCCE-EEEECCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 992889999999999748984-9995865879999987996999447986789999999999878999999999999999
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 999842689389999999869889987678888987989999999999855
Q gi|254780276|r 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERL 291 (292)
Q Consensus 241 ~~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~l 291 (292)
++.++..++++.+|++|.++|+. .++||+|+.++ +++++++|++.++++
T Consensus 242 ~~~~~~~g~~~~~K~~l~l~G~~-~g~~R~Pl~~l-~~~~~~~l~~~l~~~ 290 (294)
T PRK04147 242 IDLLIKNGVYPGLKEILHYMGVD-AGLCRKPFKPV-DEKYLPALKALAAKY 290 (294)
T ss_pred HHHHHCCCCHHHHHHHHHHCCCC-CCCCCCCCCCC-CHHHHHHHHHHHHHH
T ss_conf 99997048769999999976999-99989898999-999999999999998
No 8
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=100.00 E-value=0 Score=477.64 Aligned_cols=281 Identities=43% Similarity=0.669 Sum_probs=269.8
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 11120177389888689999999999997699899986723250108999999986543110123443003674102789
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRE 84 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~ 84 (292)
|+++++||||+|++||+++++++++|++++|++|++++|+|||+++||.+||+++++.+++++++|+||++|+++.+|++
T Consensus 1 i~~a~~TPf~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~pvi~gv~~~s~~~ 80 (281)
T cd00408 1 VIPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTRE 80 (281)
T ss_pred CCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHH
T ss_conf 94733688588969499999999999997699989968545243138999999999999998089850999578788999
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf 99975343210244320012343343178899999998753023301210011111211106899974320302331001
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
+++++++|+++|+|+++++||+|++++++++++||++|++++++|+++||+|..+|+.++++++.+|+ ++|||+|+|++
T Consensus 81 ~~~~a~~a~~~Gad~i~v~pP~y~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~l~~~~l~~L~-~~~nv~giK~s 159 (281)
T cd00408 81 AIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLA-EHPNIVGIKDS 159 (281)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH-CCCCEEEEECC
T ss_conf 99999999975999899879977789999999999999855599779972775316776899999984-89998999848
Q ss_pred CCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22113589999735984032013221001243203344552222321100244444311788279999999999999998
Q gi|254780276|r 165 TGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQAL 244 (292)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~ 244 (292)
++|..++.++++..++++.+++|.|.++++.+..|++|++++++|++|+.++++|+++++||+++|+++|+++.++.+.+
T Consensus 160 ~~d~~~~~~~~~~~~~~~~v~~G~d~~~~~~l~~G~~G~i~~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~ 239 (281)
T cd00408 160 SGDLDRLTRLIALLGPDFAVLSGDDDLLLPALALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEAL 239 (281)
T ss_pred CCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHCCCCCEEECHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999975997056269668899998728981440242316999999999998789999999999999999998
Q ss_pred HCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 42689389999999869889987678888987989999999999
Q gi|254780276|r 245 FMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL 288 (292)
Q Consensus 245 ~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l 288 (292)
+..++++++|++|+++|+..+ .+|+|+.+++ +++++++++.+
T Consensus 240 ~~~~~~~~~K~~l~~~G~~~g-~~R~P~~~l~-~~~~~~l~~~l 281 (281)
T cd00408 240 FKEGNPAPVKAALALLGLDAG-PVRLPLVPLS-EEERAKLEALL 281 (281)
T ss_pred HCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCC-HHHHHHHHHHC
T ss_conf 537878999999997699999-9899999999-99999999749
No 9
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=100.00 E-value=0 Score=473.95 Aligned_cols=285 Identities=29% Similarity=0.468 Sum_probs=262.4
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 30011120177389888689999999999997699899986723250108999999986543110123443003674102
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNN 81 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~ 81 (292)
++|||++++||||+||+||+++++++++|++++||+|++++|||||+++||.+||+++++.+++++++|+||++|+++ +
T Consensus 6 ~sGi~~a~vTPF~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~g~~~vi~gvg~-~ 84 (296)
T TIGR03249 6 GSGLLSFPVTPFDADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGG-N 84 (296)
T ss_pred CCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCH-H
T ss_conf 834441024866898787999999999999977999899783051666589999999999999983898415127861-2
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 78999975343210244320012343343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
|+++++++|+|+++|+|++|++||||++++++++++||++|++++++|+++||. ++..++++++.+|++++|||+||
T Consensus 85 t~~ai~la~~a~~~Gad~v~v~pPyy~~~~~~~l~~~f~~ia~a~~~pi~lYn~---~~~~~~~~~l~~L~~~~p~i~gi 161 (296)
T TIGR03249 85 TSDAIEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTDLGVIVYQR---DNAVLNADTLERLADRCPNLVGF 161 (296)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECC---CCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 999999999998759997897799889999999999999999715997787307---78787999999998157987999
Q ss_pred HCCCCCHHHHHHHHHHCCCCEEECCC---CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH-H
Q ss_conf 00122113589999735984032013---2210012432033445522223211002444443117882799999999-9
Q gi|254780276|r 162 KDATGKIELVSEQRLSCGFDFIQLSG---EDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDK-L 237 (292)
Q Consensus 162 K~~~~~~~~~~~~~~~~~~~~~v~~G---~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~-l 237 (292)
|++++|+.++.++++..++++.+++| .|.++...+..|++|++++++|++|+.++++|+++++||+++|+++|++ +
T Consensus 162 K~s~~d~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~G~~g~i~~~~n~~P~~~~~l~~a~~~gd~~~a~~l~~~~~ 241 (296)
T TIGR03249 162 KDGIGDMEQMIEITQRLGDRLGYLGGMPTAEVTAPAYLPLGVTSYSSAIFNFIPHIARAFYEALRRGDHATVGEIYKEFI 241 (296)
T ss_pred EECCCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 97766899999999973997279738971289999999389989962465675999999999998777999999999999
Q ss_pred HHHHHHHHCC--CCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9999998426--893899999998698899876788889879899999999998559
Q gi|254780276|r 238 MPLHQALFME--PAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 238 ~~l~~~~~~~--~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
.++.+..... ..++.+|++|+++|++.| ++|+|+.+++ +|++++|+++|+++|
T Consensus 242 ~~~~~~~~~~~~~~~~~iK~al~~~G~~~g-~~R~Pl~~lt-~ee~~~l~~~L~~~G 296 (296)
T TIGR03249 242 LPINEIRNRKKGYAVSIIKAGMEIVGLPAG-PVRPPLTDLT-KEEYAQLEVILKKAG 296 (296)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCC-HHHHHHHHHHHHHCC
T ss_conf 999998734477607999999998699999-9599999989-999999999999559
No 10
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=100.00 E-value=0 Score=473.02 Aligned_cols=285 Identities=30% Similarity=0.476 Sum_probs=261.7
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 30011120177389888689999999999997699899986723250108999999986543110123443003674102
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNN 81 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~ 81 (292)
=+||+++++|||++||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++++++|+|||+||++ +
T Consensus 2 ~sGv~~a~vTPF~~dg~iD~~~l~~~v~~li~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~v~~~~grvpvi~gvg~-~ 80 (296)
T PRK03620 2 GSGLLSFPVTPFDADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVEACAGRVPVIAGAGG-G 80 (296)
T ss_pred CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCC-C
T ss_conf 985565021883899595999999999999977999899684231343489999999999999983897359825775-3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 78999975343210244320012343343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
|+++++++++|+++|+|++|++||||++++++++++||++|++++++||++||.| +..++++++.+|++++|||+||
T Consensus 81 t~~ai~la~~A~~~Gadai~v~pPyy~~~~~~~l~~~~~~ia~a~~lPi~lYn~~---~~~~~~~~l~~L~~~~pnivgi 157 (296)
T PRK03620 81 TAQAIEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTDLGVIVYNRD---NAVLTADTLARLAERCPNLIGF 157 (296)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCC---CCCCCHHHHHHHHHHCCCEEEE
T ss_conf 7999999999998299989966986789999999999999998318997751788---8776999999999728988999
Q ss_pred HCCCCCHHHHHHHHHHCCCCEEECCCC---CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHH-H
Q ss_conf 001221135899997359840320132---210012432033445522223211002444443117882799999999-9
Q gi|254780276|r 162 KDATGKIELVSEQRLSCGFDFIQLSGE---DSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDK-L 237 (292)
Q Consensus 162 K~~~~~~~~~~~~~~~~~~~~~v~~G~---~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~-l 237 (292)
||+++|+.++.++++..+++|.+++|. +...+..+..|++||+++++|++|++++++|+++++||+++|++++++ +
T Consensus 158 Kdss~d~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~G~~g~~s~~~n~~P~~~~~l~~a~~~gd~~~a~~~~~~~~ 237 (296)
T PRK03620 158 KDGVGDIELMVRITRALGDRLLYLGGLPTAEVFAAAYLALGVPTYSSAVFNFIPEIALAFYAALRAGDHATVERLLDDFF 237 (296)
T ss_pred EECCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 95868899999999976997599828964478888996288857840302126899999999998787999999999999
Q ss_pred HHHHHHHHCCC--CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99999984268--93899999998698899876788889879899999999998559
Q gi|254780276|r 238 MPLHQALFMEP--AVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 238 ~~l~~~~~~~~--~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
.|+.+...... .++.+|++|+++|++.| ++|+|+.+++ ++++++|+++|+++|
T Consensus 238 ~p~~~~~~~~~g~~~~~iK~al~~~G~~~G-~~R~Pl~~l~-~~e~~~l~~~l~~~G 292 (296)
T PRK03620 238 LPYVAIRNRKKGYAVSIVKAGARLVGRDAG-PVRPPLTDLT-EEELAELAALIAKGG 292 (296)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCCC-HHHHHHHHHHHHHHC
T ss_conf 999999735787628999999998699999-8298999999-999999999999826
No 11
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=0 Score=463.38 Aligned_cols=288 Identities=23% Similarity=0.287 Sum_probs=258.5
Q ss_pred CCEEECCCCCCCCCCCC-------CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 30011120177389888-------68999999999999769989998672325010899999998654311012344300
Q gi|254780276|r 2 FRGSIPALITPFTKGNL-------IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM 74 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~-------iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii 74 (292)
|||||++++|||++|++ ||+++++++++|++++|++||+++|||||+++||.+||+++++.+++++++|+|||
T Consensus 2 l~Gv~~a~vTPF~~dg~~f~~~~~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~e~~~gr~pvi 81 (309)
T cd00952 2 IKGVWAIVPTPSKPDASDWRATDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVF 81 (309)
T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 84378875078579976555678737999999999999769998997923500434879999999999999838985099
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 3674102789999753432102443200123433431788999999987530-233012100111112111068999743
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
+|+++++|+++++++|+|+++|+|++|++||||++++++++++||++|++++ ++||++||+|.+||++++++++.+|+
T Consensus 82 ~G~~~~~t~~ai~~a~~a~~~Gad~~lv~~P~y~~~~~~~l~~~~~~ia~a~~~lPiilYn~P~~tg~~l~~~~~~~La- 160 (309)
T cd00952 82 VGATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRAAWAELA- 160 (309)
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH-
T ss_conf 6057505999999999998469899998888588999999999999999867899889996864001578999999995-
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHH--HHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHH
Q ss_conf 20302331001221135899997359840320132210012--4320334455222232110024444431178827999
Q gi|254780276|r 154 TYPNIVGVKDATGKIELVSEQRLSCGFDFIQLSGEDSSALG--FNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQAL 231 (292)
Q Consensus 154 ~~pni~giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~--~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~ 231 (292)
++|||+|+|+++++...... ++..++++.++++.+.++.. ....|+.|++|+.+|+.|+.++++++++.+||+++|+
T Consensus 161 ~~pnivgvK~s~~~~~~~~~-~~~~~~~~~~~~~~d~~l~~~~~~~~g~~g~~s~~a~~~P~~~~~l~~a~~~Gd~~~A~ 239 (309)
T cd00952 161 QIPQVVAAKYLGDIGALLSD-LAAVKGRMRLLPLEDDYYAAARLFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDAR 239 (309)
T ss_pred CCCCEEEEEECCCCHHHHHH-HHHHCCCCEEEECCHHHHHHHHHHCCCCEEEEEEEEHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 59998999937883679999-99828994497455267889998707784999841504279999999999878999999
Q ss_pred HHHHHHHHHHHHHHC--------CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 999999999999842--------6893899999998698899876788889879899999999998559
Q gi|254780276|r 232 LYQDKLMPLHQALFM--------EPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 232 ~l~~~l~~l~~~~~~--------~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
++|+++.++.+.++. ..+++.+|++|.++|++..+++|+|+.++ +++..+.+++.+++.+
T Consensus 240 ~l~~~l~~~~~~l~~~~~~~~~~~~~v~~~Kaal~~~G~i~~G~vR~Pl~~~-~ea~~E~lre~~rr~~ 307 (309)
T cd00952 240 ALTDRMRWAAEPLFPRGDFSEFSKYNIALEKARFDAAGYMRAGPARPPYNTA-PEAYLEGARESGRRWA 307 (309)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHH
T ss_conf 9999988999999706882104788848999999967999999989999989-9999999999999873
No 12
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; InterPro: IPR012691 This entry represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see IPR012689 from INTERPRO). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the members of this family are found in the operon for 4-hydroxyphenylacetic acid catabolism.; GO: 0008840 dihydrodipicolinate synthase activity, 0019877 diaminopimelate biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=461.07 Aligned_cols=289 Identities=37% Similarity=0.595 Sum_probs=281.8
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 30011120177389888689999999999997699899986723250108999999986543110123443003674102
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNN 81 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~ 81 (292)
|||-++|++|||..||.||++.++++|++.++.|.|||.|.||+||=.++|.|||++++|.++++++||+|++.|+|+.+
T Consensus 1 lRGSI~P~~TPF~~nG~~D~~~~~~L~E~~~~~G~H~~SV~GT~GEP~~~T~EER~~~~E~~~~~~~GR~P~~PGTG~~~ 80 (294)
T TIGR02313 1 LRGSIAPLITPFKVNGDLDEKKLRRLVEFVVENGSHAVSVTGTSGEPSSLTLEERKRVIEVVLDTVAGRVPVIPGTGALR 80 (294)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 98787888888552675218888767543214871157605656988654278899999999976168412237887654
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 789999753432102443200123433431788999999987530-2330121001111121110689997432030233
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
.++++++.|.|+++||||.||+-|||.+|+|+.+|+||++||+++ |+||+|||+|.+++.+|.+.++.||.+++|||+|
T Consensus 81 ~~ETl~~T~~A~E~GA~~AMVIVPYY~KPNQE~LY~~F~~VA~~VPD~P~~IYNIPGR~~~~~~~KT~~RL~~D~PNIVG 160 (294)
T TIGR02313 81 LDETLELTKKAKEAGADAAMVIVPYYVKPNQEALYDYFKEVADAVPDIPLLIYNIPGRAAVEIEVKTVARLVKDFPNIVG 160 (294)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCCCC
T ss_conf 03578888888850677215774477798756789999999752389757885288854341121455555421775111
Q ss_pred HHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 10012211358999973598403201322100124320334455222232110024444431178827999999999999
Q gi|254780276|r 161 VKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 (292)
Q Consensus 161 iK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l 240 (292)
.|+|+.|++++.++...++.+|.+|||-|.+-++.+++|+.|.|++++|+.|+....+++.+.+||++.|++||..++.+
T Consensus 161 ~K~S~KDlE~~~~~lL~~GRDFL~F~G~E~L~~PMl~~G~~G~I~ATAN~~PK~VA~l~~~~~~GD~~~A~~LHF~Ll~~ 240 (294)
T TIGR02313 161 LKESSKDLEYLSRLLLEAGRDFLLFSGLELLTLPMLALGAVGSIAATANVLPKKVALLHEKALEGDIKRARDLHFELLEL 240 (294)
T ss_pred CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 55542028899999986173465663178886678873121235554057706799999887516534688999999875
Q ss_pred HHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9998426893899999998698899876788889879899999999998559
Q gi|254780276|r 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 241 ~~~~~~~~~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
.+++|.+.+|.++|.+|..+|++.. ..|+|+.. .+++..++||+.+++.|
T Consensus 241 N~~~F~DTNP~P~K~~L~~MGl~E~-~~R~PlG~-~~~~~~E~~R~~~~~YG 290 (294)
T TIGR02313 241 NDVLFKDTNPIPLKAVLSMMGLLEK-VLRRPLGL-TSDELEERLRDTLVKYG 290 (294)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH-HHCCCCCC-CCHHHHHHHHHHHHHCC
T ss_conf 4665406899308998755200104-53588877-87678899999998616
No 13
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=100.00 E-value=0 Score=454.80 Aligned_cols=281 Identities=30% Similarity=0.482 Sum_probs=258.9
Q ss_pred CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 00111201773898886899999999999976998999867232501089999999865431101234430036741027
Q gi|254780276|r 3 RGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT 82 (292)
Q Consensus 3 ~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~ 82 (292)
.||+++++||||+||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++++++|+||++|+++ +|
T Consensus 2 sGv~~a~iTPF~~dg~iD~~~~~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~v~~~~~~~~~g~~~vi~g~g~-~t 80 (289)
T cd00951 2 SGLLSFPVTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGY-GT 80 (289)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCC-HH
T ss_conf 95363013876899597999999999999977999999793300621289999999999999981898517406763-19
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 89999753432102443200123433431788999999987530233012100111112111068999743203023310
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK 162 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK 162 (292)
+++++++++|+++|+|+++++||||++++++++++||++|++++++||++||. ++..++++++.+|++++|||+|||
T Consensus 81 ~~~i~la~~a~~~Gadav~v~pPy~~~~~~~~l~~~~~~ia~a~~lpi~lYn~---~~~~~~~~~l~~L~~~~p~i~giK 157 (289)
T cd00951 81 ATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLGVIVYNR---ANAVLTADSLARLAERCPNLVGFK 157 (289)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEECCC---CCCCCCHHHHHHHHHHCCCEEEEE
T ss_conf 99999999999759999997698888999999999999999846998661488---776778999999998368789999
Q ss_pred CCCCCHHHHHHHHHHCCCCEEECCCC---CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHH-HHHHH
Q ss_conf 01221135899997359840320132---210012432033445522223211002444443117882799999-99999
Q gi|254780276|r 163 DATGKIELVSEQRLSCGFDFIQLSGE---DSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLY-QDKLM 238 (292)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~G~---~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l-~~~l~ 238 (292)
++++|+.++.+++...++++.+++|. +..+...+..|++|++++++|++|++++++|+++++||+++|+++ ++.+.
T Consensus 158 ~s~~d~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~~g~~~~~~n~~Pe~~~~l~~a~~~gd~~~a~~~~~~~~~ 237 (289)
T cd00951 158 DGVGDIELMRRIVAKLGDRLLYLGGLPTAEVFALAYLAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFFL 237 (289)
T ss_pred ECCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 78889999999999759982898589833799999984998498267556509999999999987869999999999999
Q ss_pred HHHHHHHCCC--CHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9999984268--93899999998698899876788889879899999999998
Q gi|254780276|r 239 PLHQALFMEP--AVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALE 289 (292)
Q Consensus 239 ~l~~~~~~~~--~~~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~ 289 (292)
|+.++..... .++.+|++|+++|++.| ++|+|+.++ +++++++|+++||
T Consensus 238 p~~~~~~~~~g~~~~~~K~al~~~G~~~G-~~R~Pl~~l-~~~~~~~l~~~l~ 288 (289)
T cd00951 238 PYVDIRNRRKGYAVSIVKAGARLVGRDAG-PVRPPLTDL-TEEELAQLTALIK 288 (289)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHCCCCCC-CCCCCCCCC-CHHHHHHHHHHHC
T ss_conf 99998725688737999999998699999-969999998-9999999999856
No 14
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=100.00 E-value=0 Score=433.29 Aligned_cols=276 Identities=26% Similarity=0.343 Sum_probs=242.9
Q ss_pred CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 00111201773898886899999999999976998999867232501089999999865431101234430036741027
Q gi|254780276|r 3 RGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT 82 (292)
Q Consensus 3 ~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~ 82 (292)
+||++|++|||+ ||+||+++++++++|++++|++|++++|||||+++||.+||+++++.+++.++ ++++|+++.+|
T Consensus 2 ~~vi~~~vTPF~-~g~iD~~~l~~~i~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~vi~~~~~~~~---~vi~~vg~~~~ 77 (279)
T cd00953 2 PDKITPVITPFT-GNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD---KVIFQVGSLNL 77 (279)
T ss_pred CCCEEEECCCCC-CCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHCCHHHHHHHHHHHHHHCC---CEEEEECCCCH
T ss_conf 986423537849-59679999999999999779999997813121655899999999999999679---81899777879
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 89999753432102443200123433-43178899999998753023301210011111211106899974320302331
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYN-KPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~-~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
+++++++|+|+++|+|++|++||+|+ +++++++++||++|+++ +|+++||+|.++|++++++++.+|++..|||+|+
T Consensus 78 ~~ai~la~~A~~~Gad~i~~~pP~y~~~~~~~~l~~yf~~va~~--lPi~lYn~P~~tg~~l~~~~~~~L~~~~~~v~gi 155 (279)
T cd00953 78 EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSP--YPTFIYNYPKATGYDINARMAKEIKKAGGDIIGV 155 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH--CCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 99999999999779998997688678999999999999999850--9876996775358888999999998179988999
Q ss_pred HCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 00122113589999735984032013221001243203344552222321100244444311788279999999999999
Q gi|254780276|r 162 KDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLH 241 (292)
Q Consensus 162 K~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~ 241 (292)
|++++|+.++.++++ ..+++.+++|+|..+++++..|++||+++.+|++|+.++++|+++..++..++ |..+.+++
T Consensus 156 Kds~~d~~~~~~~~~-~~~~~~v~~G~d~~~~~~l~~Ga~G~i~~~~n~~P~~~~~l~~a~~~~~~~~~---q~~~~~~~ 231 (279)
T cd00953 156 KDTNEDISHMLEYKR-LVPDFKVYSGPDSLIFSALRSGLDGSVAAASNYLPEVFVKIKDHVAIEDAFKL---QFLINEVL 231 (279)
T ss_pred ECCCCCHHHHHHHHH-HCCCCEEECCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHH---HHHHHHHH
T ss_conf 738769999999998-48994785695799999998099799970898859999999999868599999---99999999
Q ss_pred HHHHCCCCHHHHHHHH-HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9984268938999999-986988998767888898798999999999985
Q gi|254780276|r 242 QALFMEPAVCCVKYAL-SRLGRNVSLAVRSPMVSTLEKDTMIAIDQALER 290 (292)
Q Consensus 242 ~~~~~~~~~~~~K~~l-~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~ 290 (292)
+.....+.....|.++ .++|+..| ++|+|+.++ +++++++|++.|++
T Consensus 232 ~~~~~~g~~~~~~~~~~~l~G~~~G-~~R~Pl~pl-~~ee~~~l~~~L~e 279 (279)
T cd00953 232 DASRKYGSWSANYSLVKIFQGYDAG-EPRPPFYPL-DEEEEEKLRKEVNE 279 (279)
T ss_pred HHHHHCCCHHHHHHHHHHHCCCCCC-CCCCCCCCC-CHHHHHHHHHHHCC
T ss_conf 9998747768999999996499899-979898887-99999999998667
No 15
>TIGR00683 nanA N-acetylneuraminate lyase; InterPro: IPR005264 N-acetylneuraminate lyase catalyzes the cleavage of N-acetylneuraminic acid (sialic acid) to form pyruvate and N-acetyl-D-mannosamine. The enzyme plays an important role in the regulation of sialic acid metabolism in bacteria..
Probab=100.00 E-value=0 Score=378.60 Aligned_cols=274 Identities=25% Similarity=0.367 Sum_probs=261.4
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCC-CCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 3001112017738988868999999999999769-989998672325010899999998654311012344300367410
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEG-SGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~g-v~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
+|||++|++||||+|+.||..++|++|+|-|+++ |||++|+|||||.+.+|.+||+++++++.+.+++++.+|++||+-
T Consensus 1 L~G~~~ALL~~F~~~~~~~~~~LR~~~~~NI~~~k~DGLYVGGSTGE~F~~S~~E~~~~l~I~~~EAK~~I~LIA~VG~V 80 (294)
T TIGR00683 1 LKGVFAALLVSFDEDQALDKKSLRRLVRFNIDKGKVDGLYVGGSTGEAFVLSLEEKKEVLRIVKDEAKDKIKLIAQVGSV 80 (294)
T ss_pred CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 91025334066331100437667899987310142131573563156775317889999999987302502221010520
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECHHHCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 27899997534321024432001234334317889999999875302-33012100111112111068999743203023
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS-SPIYIYNNPSRTVIEMDVDTMAELAATYPNIV 159 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~-~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~ 159 (292)
|+.++.++++.|++.|+|++...+|+|++-|=+|+.+||++|.+.++ .|+++||+|..||++|..|.+.+|.+ .|.|.
T Consensus 81 ~~~E~~~L~~~A~~~GyD~~SAVTPFYY~FSF~E~~~~Y~~II~~~~G~~M~VY~IP~L~GV~l~~~Q~~~L~~-~P~V~ 159 (294)
T TIGR00683 81 SLKEAVELAKYAKRLGYDALSAVTPFYYKFSFEEIKDYYDAIIDEADGLNMVVYSIPALSGVKLTLDQINELVK-LPKVL 159 (294)
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHH-CCCCE
T ss_conf 37889999998887367111203666678873677778999985248982378745320121221888888751-78721
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 31001221135899997359840320132210012432033445522223211002444443117882799999999999
Q gi|254780276|r 160 GVKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 160 giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
|+|.++||+..+.++++..|+ ..++.|.|+++++++..|+||.+.++.|+....++.++++.++||+++|.++|...+.
T Consensus 160 ~~K~T~GDlY~lE~~~~~~P~-~~~y~GyDE~~~~~~~~G~DG~IGSTyN~~G~R~~~I~~~~K~G~~~~A~~~Q~~~N~ 238 (294)
T TIGR00683 160 ALKFTAGDLYLLERLKKEYPD-LLLYAGYDEIFLSALLLGVDGAIGSTYNVNGVRARQIVKLLKEGDLAEALKLQTVTND 238 (294)
T ss_pred EEEECCCHHHHHHHHHHHCCC-CEEECCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 452040058899999875563-0120462789887886257767655100131118889998607877899999888889
Q ss_pred HHHHHHCCCCHHHHHHHHH-HCCCCCCCCCCCCCCCCCCH
Q ss_conf 9999842689389999999-86988998767888898798
Q gi|254780276|r 240 LHQALFMEPAVCCVKYALS-RLGRNVSLAVRSPMVSTLEK 278 (292)
Q Consensus 240 l~~~~~~~~~~~~~K~~l~-~~G~~~~~~~R~Pl~~~~~~ 278 (292)
+.+.+-..+....+|..|+ +-++..+ .||.|+.|..++
T Consensus 239 ~I~~~~~~G~y~~~K~~L~yl~~V~~~-~CR~P~~Pvd~K 277 (294)
T TIGR00683 239 LIDLLLKTGLYLTLKELLKYLDVVDVG-LCRKPFTPVDEK 277 (294)
T ss_pred HHHHHHHCCHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHH
T ss_conf 999998504478999999885124667-678999852011
No 16
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=98.53 E-value=3.3e-06 Score=65.81 Aligned_cols=169 Identities=20% Similarity=0.196 Sum_probs=120.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCC----HHHHHHHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543110123-44300367410----2789999753432
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGSN----NTRESVELAQYAH 93 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~~----~~~~~i~~a~~a~ 93 (292)
.+.+.++++++..+..|++++.+.. ..++.+.+..++ ++++.+.++.+ .++..+..++.|.
T Consensus 10 ~t~~~i~~~~~~a~~~~~~av~v~p--------------~~v~~~~~~l~~~~~~v~~vv~fp~g~~~~~~k~~e~~~ai 75 (201)
T cd00945 10 ATLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAI 75 (201)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEECH--------------HHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999999999862982999889--------------99999999808999838999588999997779999999999
Q ss_pred HCCCCCCCEECCCCCCCC--HHHHHHHHHHHHHHH--CCCCEEEECHHHCCCCCCHHHHHHHH---HHCCHHHHHHCCCC
Q ss_conf 102443200123433431--788999999987530--23301210011111211106899974---32030233100122
Q gi|254780276|r 94 SIGADALLVVIPYYNKPN--RRGLLAHFGEIATTV--SSPIYIYNNPSRTVIEMDVDTMAELA---ATYPNIVGVKDATG 166 (292)
Q Consensus 94 ~~Gad~i~v~~P~~~~~~--~~~i~~~~~~i~~~~--~~pi~iYn~P~~~g~~~~~~~l~~L~---~~~pni~giK~~~~ 166 (292)
+.|||.+-+..+++...+ .+.+.+..+++.+++ ++|+.++..+... .+.+.+.+.+ .+ .....+|-+++
T Consensus 76 ~~GAdeid~v~~~~~~~~~~~~~~~~ei~~v~~~~~~g~~~kvi~e~~~l---~~~~~i~~a~~~~~~-~GadfvKtstG 151 (201)
T cd00945 76 DLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGL---KTADEIAKAARIAAE-AGADFIKTSTG 151 (201)
T ss_pred HHCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC---CCHHHHHHHHHHHHH-HCCCEEEECCC
T ss_conf 90999899740567775668899999999999973579837999616778---999999999999998-09987985588
Q ss_pred ------CHHHHHHHHHHCCCCEEEC--CCCC--CCHHHHHHHCCCCCCC
Q ss_conf ------1135899997359840320--1322--1001243203344552
Q gi|254780276|r 167 ------KIELVSEQRLSCGFDFIQL--SGED--SSALGFNAHGGVGCIS 205 (292)
Q Consensus 167 ------~~~~~~~~~~~~~~~~~v~--~G~~--~~~~~~~~~G~~G~is 205 (292)
+.+.+..+++..++++.+. .|.- ......+..|+.+..+
T Consensus 152 ~~~~~at~~~v~~m~~~~~~~~~vk~sGGi~~~~~a~~~l~aGa~~igt 200 (201)
T cd00945 152 FGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIGT 200 (201)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCEEEC
T ss_conf 7889899999999999828786386358979999999999828653537
No 17
>pfam06187 DUF993 Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=98.44 E-value=3e-05 Score=58.76 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=168.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCC--------CHHHHH--
Q ss_conf 886899999999999976998999867232501089999999865431101234-430036741--------027899--
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASR-VPVMAGIGS--------NNTRES-- 85 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r-~pii~gv~~--------~~~~~~-- 85 (292)
-.||+++.-.+=++|-+.|..--=.+-|+-.++-|+...-.++++.....++.. -.|..|++. .+.+++
T Consensus 53 ~aiDWdaTlafR~~Lws~GLGVAEAMDTAQRGMGLdW~~a~ELIrRs~~ea~~~g~~ia~G~GTDhL~p~~~~~ld~V~~ 132 (382)
T pfam06187 53 PAIDWDATLAFRHHLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSLAEARAVGGRVACGAGTDHLAPSPAATLDDVIA 132 (382)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 55685989999999997143288887777503899937899999998988863488477314767789878889999999
Q ss_pred --HHHHHHHHHCCCCCCCEECCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEE-----CHHHCCC------CCCHHHHHH
Q ss_conf --99753432102443200123433--43178899999998753023301210-----0111112------111068999
Q gi|254780276|r 86 --VELAQYAHSIGADALLVVIPYYN--KPNRRGLLAHFGEIATTVSSPIYIYN-----NPSRTVI------EMDVDTMAE 150 (292)
Q Consensus 86 --i~~a~~a~~~Gad~i~v~~P~~~--~~~~~~i~~~~~~i~~~~~~pi~iYn-----~P~~~g~------~~~~~~l~~ 150 (292)
.|+....++.|...|+-.....- ..+.++-.+-|..|.+.++-|++++= -|...|+ +-..+++..
T Consensus 133 AY~eQ~~~ve~~Gg~~IlMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~ 212 (382)
T pfam06187 133 AYEEQIEAVEAAGGRVILMASRALARVARSPDDYARVYGRVLAQVDEPVILHWLGDMFDPALAGYWGSDDFDAAMDTVLA 212 (382)
T ss_pred HHHHHHHHHHHCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999997299699973088998738978799999999986379889751211048565056588878999999999
Q ss_pred HHHHCC-HHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHC-CCCCC----CCCCCCCCCHHHHHHHHHCC
Q ss_conf 743203-0233100122113589999735984032013221001243203-34455----22223211002444443117
Q gi|254780276|r 151 LAATYP-NIVGVKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHG-GVGCI----SVTANVVPRICAEFQQAMIR 224 (292)
Q Consensus 151 L~~~~p-ni~giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G-~~G~i----s~~~n~~P~~~~~l~~~~~~ 224 (292)
|..+++ .|-|||-|--|-++-..++++.+..+++++|.|=.. +.+..| ..|.. ..+..+.|-. ..-..+..+
T Consensus 213 iI~~~~~kVdGIKiSLLd~~~Ei~lRrrLP~gVr~YTGDDFNY-peLI~GD~~~~S~ALLGiFdaiaPaA-s~Al~aLd~ 290 (382)
T pfam06187 213 IIAAHADKVDGIKISLLDAQKEIALRRRLPDGVRMYTGDDFNY-PELIAGDGQGHSHALLGIFDAIAPAA-SAALQALDA 290 (382)
T ss_pred HHHHCHHHCCCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCC-HHHHCCCCCCCCHHHHHHHHHCCHHH-HHHHHHHHC
T ss_conf 9985755337447740174768999974898645635788775-98716788885188876532021889-999999858
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHCCCCCC
Q ss_conf 88279999999999999998426893---899999998698899
Q gi|254780276|r 225 GDYRQALLYQDKLMPLHQALFMEPAV---CCVKYALSRLGRNVS 265 (292)
Q Consensus 225 gd~~~A~~l~~~l~~l~~~~~~~~~~---~~~K~~l~~~G~~~~ 265 (292)
||.++.+++-+.-.|+.+.+|+.+.. .++-+..++-|.-.+
T Consensus 291 Gd~~~f~~il~pTvpLsRhiF~aPT~~YKtGvvFLAwLnG~Q~h 334 (382)
T pfam06187 291 GDTARFRAILEPTVPLSRHIFRAPTQYYKTGVVFLAWLNGHQDH 334 (382)
T ss_pred CCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99888998864551545554038722444448999997389854
No 18
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=97.79 E-value=0.0014 Score=46.74 Aligned_cols=258 Identities=14% Similarity=0.089 Sum_probs=137.8
Q ss_pred CCCCHH----HHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHH---HCCCCCCCCCCCCCC--CH-----H
Q ss_conf 886899----999999999976998999867232501089999999865431---101234430036741--02-----7
Q gi|254780276|r 17 NLIDED----AFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCV---KTVASRVPVMAGIGS--NN-----T 82 (292)
Q Consensus 17 ~~iD~~----~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~---~~~~~r~pii~gv~~--~~-----~ 82 (292)
+.++++ +++..++-+++.|||.|++ |...=+.+-+ ..+..+. +..+.++||++.++- .+ =
T Consensus 156 g~itfdel~~~y~eQ~~~L~~gGvD~ili-----ET~~D~le~K-AAv~A~~e~~~~~~~~lPv~vs~T~~e~~Grtl~G 229 (1229)
T PRK09490 156 RNVTFDELVAAYREQTRGLIEGGADLILI-----ETIFDTLNAK-AAIFAVEEVFEELGVRLPVMISGTITDASGRTLSG 229 (1229)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEE-----ECCCCHHHHH-HHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEECC
T ss_conf 78899999999999999998559989999-----7124589999-99999999998519998589999998799987589
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC---HHH-CCCCCCHHHHHHHHHHCCHH
Q ss_conf 89999753432102443200123433431788999999987530233012100---111-11211106899974320302
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNN---PSR-TVIEMDVDTMAELAATYPNI 158 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~---P~~-~g~~~~~~~l~~L~~~~pni 158 (292)
.+.-..+...+.+|+|+|=+= -....+++..|.+++++.++.||++|-| |.. .+++++|+.+.+..+++-.-
T Consensus 230 ~~~ea~~~~l~~l~~d~vGlN----Cs~Gp~~m~~~v~~l~~~~~~pisv~PNAGLP~~~g~Y~~tPee~a~~~~~f~~~ 305 (1229)
T PRK09490 230 QTTEAFWNSLRHAKPLSIGLN----CALGADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIEEFAES 305 (1229)
T ss_pred CCHHHHHHHHHCCCCCEEEEE----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 989999999854898789770----8889899999999998428977797268989987898889999999999999984
Q ss_pred HHHH---CCCC-CHHHHHHHHHHCC---CC-------EEECCCCCCCHHHHHHHCCC-CCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 3310---0122-1135899997359---84-------03201322100124320334-4552222321100244444311
Q gi|254780276|r 159 VGVK---DATG-KIELVSEQRLSCG---FD-------FIQLSGEDSSALGFNAHGGV-GCISVTANVVPRICAEFQQAMI 223 (292)
Q Consensus 159 ~giK---~~~~-~~~~~~~~~~~~~---~~-------~~v~~G~~~~~~~~~~~G~~-G~is~~~n~~P~~~~~l~~~~~ 223 (292)
-++. =++| .+++++.+..... ++ ...++|.+.. ..+.. .++..-=-+.|.--.++.++++
T Consensus 306 g~vnivGGCCGTTPeHI~al~~~v~~~~Pr~~~~~~~~~~~S~~~~~-----~~~~~~~~~~IGERiN~tGskkf~~~l~ 380 (1229)
T PRK09490 306 GFLNIVGGCCGTTPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPL-----TIDKDSLFVNVGERTNVTGSAKFARLIK 380 (1229)
T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECEEEE-----EECCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 98005476679998999999987503898877888862466220468-----8548886046641005423099999998
Q ss_pred CCCCHHHHHHHH-HHHH---HHHHHHCCCCH---HHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 788279999999-9999---99998426893---899999998698899876788889879899999999998559
Q gi|254780276|r 224 RGDYRQALLYQD-KLMP---LHQALFMEPAV---CCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 224 ~gd~~~A~~l~~-~l~~---l~~~~~~~~~~---~~~K~~l~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
++||+.+.++-. ++.. ++++....+.+ ..+...+++.--. ..-.+.|+.-.+ .....|+++|+.++
T Consensus 381 ~~d~~~~l~~A~~Qv~~GA~vLDVNv~~~~~D~~~~m~~~~~~l~~~-~~i~~vPl~IDS--s~~~viEaaLk~~~ 453 (1229)
T PRK09490 381 EEDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASE-PDIARVPIMIDS--SKWEVIEAGLKCIQ 453 (1229)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCC-CCCCCCCEEEEC--CCHHHHHHHHHHCC
T ss_conf 43989999999999975897887427876534699999999998436-654778846848--88899999998639
No 19
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=97.52 E-value=0.0019 Score=45.69 Aligned_cols=122 Identities=18% Similarity=0.216 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC--------CCHHCCCHHHHHHHHHHHHHCCCC--CCCCCCCC-----CCCHHHH
Q ss_conf 89999999999997699899986723--------250108999999986543110123--44300367-----4102789
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTT--------GESSTLSHEEHCRIIELCVKTVAS--RVPVMAGI-----GSNNTRE 84 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~t--------GE~~~Ls~~Er~~~~~~~~~~~~~--r~pii~gv-----~~~~~~~ 84 (292)
+.....+.++.+++.|+.|+-+=-++ +--...+.+|..+-++.++++... .+-|++=+ +....++
T Consensus 82 ~~~~v~~tv~~~~~aG~agi~IED~~~~k~~~~~~~~~l~~~~e~~~ki~aa~~a~~~~~d~~I~ARTDa~~~~~~~~~e 161 (243)
T cd00377 82 NALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDE 161 (243)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCHHH
T ss_conf 67999999999997499679865878876566657632306999999999999988636881687542345405788999
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHH
Q ss_conf 9997534321024432001234334317889999999875302330121001111121110689997
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAEL 151 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L 151 (292)
++++++.+.++|||++++..| .+.+++ ++++++.+.|+.+=..|. +..++.+.+.+|
T Consensus 162 ai~R~~aY~~AGAD~ifi~~~----~~~~ei----~~~~~~~~~Pl~~~~~~~--~~~~~~~eL~~l 218 (243)
T cd00377 162 AIERAKAYAEAGADGIFVEGL----KDPEEI----RAFAEAPDVPLNVNMTPG--GNLLTVAELAEL 218 (243)
T ss_pred HHHHHHHHHHCCCCEEEECCC----CCHHHH----HHHHHHCCCCEEEEECCC--CCCCCHHHHHHC
T ss_conf 999999999829989994589----999999----999973699989995788--999999999986
No 20
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=97.44 E-value=0.0044 Score=43.06 Aligned_cols=122 Identities=18% Similarity=0.156 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEC--------CCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCC---CCCHHHHHHH
Q ss_conf 89999999999997699899986--------723250108999999986543110123-44300367---4102789999
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPA--------GTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGI---GSNNTRESVE 87 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~--------G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv---~~~~~~~~i~ 87 (292)
+..-..+.|+.+...|+.|+.+- |+..--...+.+|..+=++.++++-.+ .+-|++-+ ...+.+++++
T Consensus 91 ~~~nv~rtV~~~e~aGvagi~IEDq~~pKrcgh~~gk~lv~~~e~~~KI~AA~~ar~~~df~IiARTDA~~~~gldeAi~ 170 (292)
T PRK11320 91 GAFNIARTIKSMIKAGAAAVHIEDQVGQKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIE 170 (292)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHH
T ss_conf 27889999999997499689841555665568666753334999999999999856799859999536334588699999
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCC--CCCHHHHHHH
Q ss_conf 753432102443200123433431788999999987530233012100111112--1110689997
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVI--EMDVDTMAEL 151 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~--~~~~~~l~~L 151 (292)
+++.+.++|||+|++-.| .+.+++ +.++++.+.|++.--. -.|. .++.+.+.++
T Consensus 171 Ra~aY~eAGAD~if~ea~----~~~ee~----~~~~~~~~~Pll~n~~--e~g~tP~~s~~el~~l 226 (292)
T PRK11320 171 RAQAYVEAGADMIFPEAI----TELDMY----RRFADAVKVPILANIT--EFGATPLFTTEELASA 226 (292)
T ss_pred HHHHHHHCCCCEEECCCC----CCHHHH----HHHHHHCCCCEEEEEC--CCCCCCCCCHHHHHHC
T ss_conf 999999779989941789----999999----9999977999899848--9999988799999977
No 21
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=97.24 E-value=0.0099 Score=40.50 Aligned_cols=175 Identities=19% Similarity=0.281 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC--------HHHHHHHHHHH
Q ss_conf 8999999999999769989998672325010899999998654311012344300367410--------27899997534
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN--------NTRESVELAQY 91 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~--------~~~~~i~~a~~ 91 (292)
..+-.+..++.+++.|++++...= -+++...+...+++|+|+.+++. .-+..+.-.+.
T Consensus 19 gl~d~~~~i~~~~~~g~dai~~~~--------------G~~~~~~~~~~~~~~li~~ls~~t~~~~~~~~~~~l~~sVee 84 (235)
T cd00958 19 GLEDPEETVKLAAEGGADAVALTK--------------GIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVED 84 (235)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECH--------------HHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHCCHHH
T ss_conf 645989999999864999999888--------------899751532157876699964676457888517766516999
Q ss_pred HHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCC--CCCHHHH---HHHHHHCC-HHHHHH
Q ss_conf 32102443200123433431788999999987530---233012100111112--1110689---99743203-023310
Q gi|254780276|r 92 AHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVI--EMDVDTM---AELAATYP-NIVGVK 162 (292)
Q Consensus 92 a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~--~~~~~~l---~~L~~~~p-ni~giK 162 (292)
|-.+|||||.+.-. +....+++.++-+.++++.+ ++|+++.-+|.-... ..+++.+ .|++-++. .|+=+|
T Consensus 85 AvrlGAdaV~~~v~-~Gs~~E~~~l~~l~~v~~ea~~~G~Pll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv~ 163 (235)
T cd00958 85 AVRLGADAVGVTVY-VGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK 163 (235)
T ss_pred HHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 98355567999986-89816899999999999999983997899974168765565668999999999999789989823
Q ss_pred CCCCCHHHHHHHHHHCCCCEEECCCC----CCCH----HHHHHHCCCCCCCCCCCCC
Q ss_conf 01221135899997359840320132----2100----1243203344552222321
Q gi|254780276|r 163 DATGKIELVSEQRLSCGFDFIQLSGE----DSSA----LGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~G~----~~~~----~~~~~~G~~G~is~~~n~~ 211 (292)
++ +|.+.+.++.+.++-.+.+..|. +.-+ ...+..|+.|.+.|= |+|
T Consensus 164 y~-g~~e~f~~vv~~~~vPVviaGG~k~~~~~~~L~~v~~a~~aGa~Gv~~GR-Nvf 218 (235)
T cd00958 164 YT-GDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGR-NIF 218 (235)
T ss_pred CC-CCHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECC-HHH
T ss_conf 99-99899999997089989980899999999999999999976995676364-122
No 22
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=96.99 E-value=0.021 Score=38.10 Aligned_cols=170 Identities=19% Similarity=0.238 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-H------HHHHHHHHHHHH
Q ss_conf 999999999999769989998672325010899999998654311012344300367410-2------789999753432
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN-N------TRESVELAQYAH 93 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~-~------~~~~i~~a~~a~ 93 (292)
++..+..++.+++.|++++...= | +++.......+++|+|...++. + -.....-.+.|-
T Consensus 38 l~d~~~~i~~~~~~g~dai~~~~--G------------~~~~~~~~~~~~~~lil~l~~~t~~~~~~~~~~~~~sVeeAv 103 (266)
T PRK07226 38 LVDMRETVNKVAEGGADAVLMHK--G------------LARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEDAI 103 (266)
T ss_pred CCCHHHHHHHHHHCCCCEEEECH--H------------HHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHEEECCHHHHH
T ss_conf 35999999999863999999676--7------------786435221578874999437731478864010121499998
Q ss_pred HCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCC--CCCHHHH---HHHHHHCC-HHHHHHCC
Q ss_conf 102443200123433431788999999987530---233012100111112--1110689---99743203-02331001
Q gi|254780276|r 94 SIGADALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVI--EMDVDTM---AELAATYP-NIVGVKDA 164 (292)
Q Consensus 94 ~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~--~~~~~~l---~~L~~~~p-ni~giK~~ 164 (292)
.+|||||.+.-. +....+.+.++-+.++++++ ++|++..-+|.-.+. ..+++.+ .|++-++. .|+=++ -
T Consensus 104 rlGAdaV~~~v~-~Gs~~E~~~l~~l~~l~~ea~~~GlPll~~~yprG~~~~~~~d~~~ia~aaRia~ELGADiVKv~-y 181 (266)
T PRK07226 104 KLGADAVSVHVN-VGSETEAEMLEDLGRIARECEEWGMPLLAMMYPRGPKIKNEYDPEVVAHAARVGAELGADIIKTN-Y 181 (266)
T ss_pred HCCCCEEEEEEE-CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEC-C
T ss_conf 558778999854-79983799999999999999985995699973468877778759999999999999679989835-9
Q ss_pred CCCHHHHHHHHHHCCCCEEECCCCC----CCHH----HHHHHCCCCCCCC
Q ss_conf 2211358999973598403201322----1001----2432033445522
Q gi|254780276|r 165 TGKIELVSEQRLSCGFDFIQLSGED----SSAL----GFNAHGGVGCISV 206 (292)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~v~~G~~----~~~~----~~~~~G~~G~is~ 206 (292)
++|.+.+.++...++-.+.+..|.. ..++ ..+..|+.|.+.|
T Consensus 182 ~gd~e~f~~vv~~~~vPVliaGG~k~~~~~~~L~~v~~ai~aGa~Gv~~G 231 (266)
T PRK07226 182 TGDPESFREVVEGCPVPVVIAGGPKTGSDLEFLQMVEDAMEAGAAGVAIG 231 (266)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99989999999847987899578888988999999999997599466526
No 23
>PRK06857 consensus
Probab=96.78 E-value=0.03 Score=37.02 Aligned_cols=181 Identities=15% Similarity=0.166 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-|.+.....++-+++.|++-+=+.= +.+.-.+.++...+..++ +++|+|.--+ .+.++.|.++||+
T Consensus 21 ~~~~~a~~~~~al~~gGi~~iEiTl--------rt~~a~~~I~~l~~~~p~---~~vGaGTV~~---~e~~~~a~~aGA~ 86 (209)
T PRK06857 21 DDAEDILPLAKVLAENGLPVAEITF--------RSAAAAEAIRLLREAYPD---MLIGAGTVLT---PEQVDAAKEAGAD 86 (209)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--------CCCCHHHHHHHHHHHCCC---CEEEEEECCC---HHHHHHHHHCCCC
T ss_conf 9999999999999987998899958--------993299999999975899---4899993767---9999999983999
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH----CCCCCHHHHHHH
Q ss_conf 3200123433431788999999987530233012100111112111068999743203023310----012211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK----DATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK----~~~~~~~~~~~~ 174 (292)
.+ +.|. .+.++.++.++ .++|.+ | |+ +++..+.+.. +.. ...+| +.++-...+..+
T Consensus 87 Fi--VSP~----~~~~v~~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~G-~~~vKlFPA~~~gG~~~lkal 146 (209)
T PRK06857 87 FI--VSPG----FNPNTVKYCQQ----LNIPIV----P---GV-NNPSLVEQAL-EMG-LTTLKFFPAEASGGVNMLKAL 146 (209)
T ss_pred EE--ECCC----CCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HCC-CCEEEECCCCCCCCHHHHHHH
T ss_conf 99--9089----99999999997----499654----7---87-9999999999-879-998997866212669999998
Q ss_pred HHHCCC-CEEECCCCC-CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 973598-403201322-100124320334455222232110024444431178827999999999999
Q gi|254780276|r 175 RLSCGF-DFIQLSGED-SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~~-~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l 240 (292)
+.-+++ +|..-.|.. +.+-+++..|...++. -++++|+.. +.+|||++..+.-.+...+
T Consensus 147 ~~p~p~~~~~ptGGV~~~N~~~yl~~~~v~~~g-GS~l~~~~~------i~~~d~~~I~~~a~~~~~~ 207 (209)
T PRK06857 147 LAPYPNLQIMPTGGINPSNIKDYLAIPNVVACG-GTWMVPKKL------IDNGNWDEIGRLVREVVAL 207 (209)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHHHHH
T ss_conf 653899809964898887899998599889998-936589999------9728999999999999997
No 24
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=96.72 E-value=0.031 Score=36.90 Aligned_cols=171 Identities=15% Similarity=0.152 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCC--CCHHHHH-----HHHHHHH
Q ss_conf 9999999999997699899986723250108999999986543110123-443003674--1027899-----9975343
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIG--SNNTRES-----VELAQYA 92 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~--~~~~~~~-----i~~a~~a 92 (292)
++.++++++...+.|++++.+.-.. ++.+.+..++ ++.+++|.. ...+..- +.-++.|
T Consensus 18 ~~di~~l~~~a~~~g~~avcv~p~~--------------v~~~~~~l~~~~v~~vv~fp~g~~~~~~k~~~~~~~ev~~A 83 (231)
T pfam01791 18 SADIKALVAEALEPGASAVCVNPGY--------------VALAARLLGKVDIALVIGFPAGTYLTPVKGRDVLVAEAEEA 83 (231)
T ss_pred HHHHHHHHHHHHHHCCCEEEECHHH--------------HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf 6899999999998799989987899--------------99999986579836999747988776554310028879999
Q ss_pred HHCCCCCCCEECCCC-CC-CCHHHHHHHHHHHHHHH---CCCCEEEECHH--HCCCCCCHHHHHHH---HHHCCHHHHHH
Q ss_conf 210244320012343-34-31788999999987530---23301210011--11121110689997---43203023310
Q gi|254780276|r 93 HSIGADALLVVIPYY-NK-PNRRGLLAHFGEIATTV---SSPIYIYNNPS--RTVIEMDVDTMAEL---AATYPNIVGVK 162 (292)
Q Consensus 93 ~~~Gad~i~v~~P~~-~~-~~~~~i~~~~~~i~~~~---~~pi~iYn~P~--~~g~~~~~~~l~~L---~~~~pni~giK 162 (292)
-+.|||+|-+..++- .+ ...+++.+...++.+++ ++|+++--+|. ...-..+++.+.+. +.+. ..-.+|
T Consensus 84 i~~GAdeid~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~~lkvIiE~~~~~~~~~~~~~~~~i~~a~ria~e~-GaD~vK 162 (231)
T pfam01791 84 IALGADEVDMVVNIGADGSEDEEQVLAEIAAVKEACHGEGLKVILEAYLRGEEIKDKVDPHLVAKATRVGAEA-GADFVK 162 (231)
T ss_pred HHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCHHHHHHHHHHHHHH-CCCEEE
T ss_conf 9879988999972465789559999999999998631048708999851572100326899999999999995-999898
Q ss_pred CCCC---------CHHHHHHHHHHCCCCEEECCCCC-----C---CHHHHHHHCCC--CCCCC
Q ss_conf 0122---------11358999973598403201322-----1---00124320334--45522
Q gi|254780276|r 163 DATG---------KIELVSEQRLSCGFDFIQLSGED-----S---SALGFNAHGGV--GCISV 206 (292)
Q Consensus 163 ~~~~---------~~~~~~~~~~~~~~~~~v~~G~~-----~---~~~~~~~~G~~--G~is~ 206 (292)
-+++ +...+.+.....+-.+....|.- . .....+..|++ |..+|
T Consensus 163 tstg~~~~gat~~~v~~~~~~~~~~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGA~~~G~s~G 225 (231)
T pfam01791 163 TSTGFGERGATEEDVQIFKEVVGGAPPGVKASGGIKEKDFLRTVEDAIALIEAGADRIGVSAG 225 (231)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 157878887788899999998568787489933868643789999999999869981209998
No 25
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.69 E-value=0.062 Score=34.68 Aligned_cols=181 Identities=18% Similarity=0.151 Sum_probs=108.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-|.+.....++-+++.|++-+=+.= +...-.+.++...+..++ +++|+|+--+. +.++.|.++||+
T Consensus 24 ~~~~~a~~i~~al~~gGi~~iEiTl--------~tp~a~~~I~~l~~~~p~---~~vGaGTV~~~---e~~~~a~~aGA~ 89 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTL--------RTPAALEAIRAIRKEVPE---ALIGAGTVLNP---EQLAQAIEAGAQ 89 (212)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--------CCCHHHHHHHHHHHHCCC---CEEEEEEECCH---HHHHHHHHCCCC
T ss_conf 8999999999999987997899957--------896199999999975898---17965331348---899999984998
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ +.|. .+.++.++.++ .++|.+ | |+ +++..+.+.. +. ....+|- ..+-...+..+
T Consensus 90 Fi--VSP~----~~~~v~~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~-G~~~vK~FPA~~~gG~~~lkal 149 (212)
T PRK05718 90 FI--VSPG----LTPPLLKACQD----GPIPLI----P---GV-NTPSELMLAM-EL-GLRTFKFFPAEASGGVKMLKAL 149 (212)
T ss_pred EE--ECCC----CCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCCCCCCCHHHHHHH
T ss_conf 99--8489----98999999998----199765----7---86-9999999999-87-9998997876101799999998
Q ss_pred HHHCCC-CEEECCCCCC-CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 973598-4032013221-00124320334455222232110024444431178827999999999999
Q gi|254780276|r 175 RLSCGF-DFIQLSGEDS-SALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~~~-~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l 240 (292)
+.-+++ +|....|... .+-+++..+...++. -++++|+.. .++|||++.++.-.++..+
T Consensus 150 ~~p~p~i~~~ptGGV~~~N~~~yl~~~~v~avg-GS~l~~~~~------v~~~d~~~I~~~a~~~~~~ 210 (212)
T PRK05718 150 AGPFSDVRFCPTGGISPANYRDYLALPNVLCIG-GSWMVPKDA------IENGDWDRITRLAREAVAL 210 (212)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHCCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHHHHH
T ss_conf 565899828865998987899998178869998-735289999------8648999999999999997
No 26
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=96.62 E-value=0.035 Score=36.54 Aligned_cols=150 Identities=21% Similarity=0.287 Sum_probs=92.4
Q ss_pred CCCCCH----HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC------CHHHHH
Q ss_conf 888689----9999999999976998999867232501089999999865431101234430036741------027899
Q gi|254780276|r 16 GNLIDE----DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS------NNTRES 85 (292)
Q Consensus 16 d~~iD~----~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~------~~~~~~ 85 (292)
.+.+++ +.++..++.+++.|||.+++ |.+ -+.+|=+..++.+.+.. .+|++++.+- .+=.+.
T Consensus 116 ~~~~~~~e~~~~f~eQ~~~L~e~GvD~ill-----ET~-~dl~E~~~Al~aar~~~--~lPvi~s~t~~~~G~t~~G~~~ 187 (608)
T PRK08645 116 QGDLSLEEILEEFREQIDALLEEGVDGLLL-----ETF-YDLEELLEALKAARKKT--DLPIIAQVAFHEDGVTQNGTSL 187 (608)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEE-----EHH-CCHHHHHHHHHHHHHHC--CCCEEEEEEECCCCCCCCCCCH
T ss_conf 999999999999999999997579989998-----630-59999999999999756--9979999998899808999979
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC---HHHC----CCCCCHHHHHHHHHHCCHH
Q ss_conf 99753432102443200123433431788999999987530233012100---1111----1211106899974320302
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNN---PSRT----VIEMDVDTMAELAATYPNI 158 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~---P~~~----g~~~~~~~l~~L~~~~pni 158 (292)
.+.++..++.|+|++-+=. ...++++.+..+.+...++.|+.+|-| |... .++.+||.+.+.++++-.
T Consensus 188 ~~a~~~l~~~gad~VG~NC----~~GP~~m~~~l~~l~~~~~~pl~v~PNAGlP~~~~gr~~Y~~tPe~Fa~~a~~~~~- 262 (608)
T PRK08645 188 EEALKQLVALGADVVGLNC----GLGPYHMLEALKRIELPADAPLSAYPNAGLPEYVEGRYVYSANPEYFAEYAREFVE- 262 (608)
T ss_pred HHHHHHHHCCCCCEEEECC----CCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHH-
T ss_conf 9999998628998898879----78999999999998742598189978899988789830278999999999999998-
Q ss_pred HHHHC---CCC-CHHHHHHHHHHC
Q ss_conf 33100---122-113589999735
Q gi|254780276|r 159 VGVKD---ATG-KIELVSEQRLSC 178 (292)
Q Consensus 159 ~giK~---~~~-~~~~~~~~~~~~ 178 (292)
.|++. ++| .+++++.+.+..
T Consensus 263 ~Ga~iIGGCCGTTPeHIraia~al 286 (608)
T PRK08645 263 EGVRLIGGCCGTTPEHIRAMKEAL 286 (608)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 599799757799999999999984
No 27
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.60 E-value=0.029 Score=37.04 Aligned_cols=171 Identities=18% Similarity=0.249 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC---HH----HHHHHHHHHH
Q ss_conf 8999999999999769989998672325010899999998654311012344300367410---27----8999975343
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN---NT----RESVELAQYA 92 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~---~~----~~~i~~a~~a 92 (292)
+++-.+..++...+.|++.+... .-+++.+......++|+|+..++. +. ...+...+.|
T Consensus 41 gl~d~e~~v~~~~~~g~dav~~~--------------~Gi~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~a 106 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAMT--------------PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDA 106 (265)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEC--------------HHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEHHHH
T ss_conf 42699999999985489989846--------------7588650755357767799964666567786431123409889
Q ss_pred HHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCC----CCCHHHHH---HHHHHCC-HHHHH
Q ss_conf 2102443200123433431788999999987530---233012100111112----11106899---9743203-02331
Q gi|254780276|r 93 HSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVI----EMDVDTMA---ELAATYP-NIVGV 161 (292)
Q Consensus 93 ~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~----~~~~~~l~---~L~~~~p-ni~gi 161 (292)
-.+|+||+.+.-. +...++.+.++-+.++.+.+ .+|+++.-+|.-.++ ..+++.+. ||..++. .|+=.
T Consensus 107 i~lgadAV~~~Vy-~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~ 185 (265)
T COG1830 107 IRLGADAVGATVY-VGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT 185 (265)
T ss_pred HHCCCCEEEEEEE-CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 7478747999996-687625899999999999998709964998813587765444336899999999999865776861
Q ss_pred HCCCCCHHHHHHHHHHCCCCEEECCCCCC----CH----HHHHHHCCCCCCCC
Q ss_conf 00122113589999735984032013221----00----12432033445522
Q gi|254780276|r 162 KDATGKIELVSEQRLSCGFDFIQLSGEDS----SA----LGFNAHGGVGCISV 206 (292)
Q Consensus 162 K~~~~~~~~~~~~~~~~~~~~~v~~G~~~----~~----~~~~~~G~~G~is~ 206 (292)
| -++|.+.++++.+.++-.+.+-.|.-. .+ ...+..|+.|...|
T Consensus 186 ~-ytg~~e~F~~vv~~~~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~G 237 (265)
T COG1830 186 K-YTGDPESFRRVVAACGVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVG 237 (265)
T ss_pred C-CCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 5-999847899999718998798479888974999999999998357303331
No 28
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=96.59 E-value=0.061 Score=34.73 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHCCCCCCCEEC
Q ss_conf 999975343210244320012
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~ 104 (292)
+-.+-|++|+++|+|+|.+..
T Consensus 151 ~f~~AA~rA~~AGfDgVEIH~ 171 (382)
T cd02931 151 KFGESAVIAKEAGFDGVEIHA 171 (382)
T ss_pred HHHHHHHHHHHCCCCEEEECC
T ss_conf 999999999984999899624
No 29
>PRK08782 consensus
Probab=96.58 E-value=0.091 Score=33.47 Aligned_cols=184 Identities=15% Similarity=0.166 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-|.+.-...++-+++.|++-+=+. |+.+.-.+.++...+..++ +++|+|.--+. +.++.|.++||+
T Consensus 26 ~~~~~a~~~~eal~~gGi~~iEiT--------lrt~~a~~~i~~l~~~~p~---~~vGaGTV~~~---e~~~~a~~aGA~ 91 (219)
T PRK08782 26 DTLDQARRVADALLEGGLPAIELT--------LRTPVAIEALAMLKRELPN---IVIGAGTVLSE---RQLRQSVDAGAD 91 (219)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCHHHHHHHHHHHHCCC---CEEEEEEECCH---HHHHHHHHCCCC
T ss_conf 999999999999998799879996--------7993399999999986899---47999970589---999999984998
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ +.| ..+.++.++.++ .++|.+ | |+ +++..+.+.. +. ....+|- ..|-...+..+
T Consensus 92 Fi--VSP----~~~~~v~~~a~~----~~i~~i----P---Gv-~TpSEi~~A~-~~-G~~~vKlFPA~~~Gg~~~lkal 151 (219)
T PRK08782 92 FL--VTP----GTPAPLARLLAD----APIPAV----P---GA-ATPTELLTLM-GL-GFRVCKLFPATAVGGLQMLKGL 151 (219)
T ss_pred EE--ECC----CCCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCCHHCCCHHHHHHH
T ss_conf 99--878----997999999998----199764----7---85-9999999999-87-9998997773220849999998
Q ss_pred HHHCCCC-EEECCCCC-CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 9735984-03201322-100124320334455222232110024444431178827999999999999999
Q gi|254780276|r 175 RLSCGFD-FIQLSGED-SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQA 243 (292)
Q Consensus 175 ~~~~~~~-~~v~~G~~-~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~ 243 (292)
..-+++- |.--.|.. ..+-+++..+...++. -++++|+.. ..+|||++-.+.-.+...+.+-
T Consensus 152 ~~pfp~~~f~pTGGV~~~N~~~yl~~~~v~~vg-GS~l~~~~l------i~~~dw~~I~~~a~~~~~~v~~ 215 (219)
T PRK08782 152 AGPLSELKLCPTGGISETNAAEFLSQPNVLCIG-GSWMVPKDW------LAQGQWDKVKESSAKAAAIVRQ 215 (219)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHHHHHHHH
T ss_conf 476999818767998987899998079939998-825389999------8619999999999999999999
No 30
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=96.55 E-value=0.041 Score=36.02 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC--------CHHCCCHHHHHHHHHHHHHCCCCC-CCCCCC---CCCCHHHHHHHH
Q ss_conf 99999999999976998999867232--------501089999999865431101234-430036---741027899997
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTG--------ESSTLSHEEHCRIIELCVKTVASR-VPVMAG---IGSNNTRESVEL 88 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tG--------E~~~Ls~~Er~~~~~~~~~~~~~r-~pii~g---v~~~~~~~~i~~ 88 (292)
.....+.|..+...|+.|+-+--..+ --...+.+|-.+-++.+++...+. .-|++= .....++++|++
T Consensus 92 ~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~R 171 (289)
T COG2513 92 ALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIER 171 (289)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCHHHHHHH
T ss_conf 88999999999975862664532255021278889876789999999999997155888599961487775247999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 534321024432
Q gi|254780276|r 89 AQYAHSIGADAL 100 (292)
Q Consensus 89 a~~a~~~Gad~i 100 (292)
++.+.++|||+|
T Consensus 172 a~AY~eAGAD~i 183 (289)
T COG2513 172 AQAYVEAGADAI 183 (289)
T ss_pred HHHHHHCCCCEE
T ss_conf 999997597687
No 31
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=96.52 E-value=0.091 Score=33.46 Aligned_cols=118 Identities=21% Similarity=0.134 Sum_probs=80.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCCC-CCCCCCCHHH
Q ss_conf 2017738988868999999999999769989998672325010899999998654311012---34430-0367410278
Q gi|254780276|r 8 ALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVPV-MAGIGSNNTR 83 (292)
Q Consensus 8 ~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~pi-i~gv~~~~~~ 83 (292)
-+-|-++..--++.+.+.+.+..+...|+|=+====......+...+||......+++.+. |+..+ .+.+++ .+.
T Consensus 142 LlgtiiKP~vGls~~~~a~~~~e~~~GGvDfiKDDE~l~~q~~~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~ 220 (411)
T PRK09549 142 LLMSIFKGMIGRDIGYLKEQLRDQAIGGVDIVKDDEILFENALTPLEKRIVSGKEVLQEVYETTGHKTLYAVNLTG-RTF 220 (411)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CHH
T ss_conf 0577626866899899999999986458651458645679777889999999999999999985886659986588-979
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH--HCCCCEEE
Q ss_conf 999975343210244320012343343178899999998753--02330121
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT--VSSPIYIY 133 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~--~~~pi~iY 133 (292)
+.+++++.+++.|+.++|+-+-.+ . +.-++.+++. ..+||+.+
T Consensus 221 em~~ra~~a~e~G~~~vmv~~~~~-G------~~~~~~L~~~~~~~lpI~aH 265 (411)
T PRK09549 221 ELKENAKRAVELGADALLFNVFAY-G------LDVLQSLAEDDEIPVPIMAH 265 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC-C------HHHHHHHHHCCCCCCEEEEC
T ss_conf 999999999985998899965536-3------99999998477889467631
No 32
>TIGR02082 metH methionine synthase; InterPro: IPR011822 Vitamin B12 dependent methionine synthase 2.1.1.13 from EC (5-methyltetrahydrofolate--homocysteine S-methyltransferase) catalyses the conversion of 5-methyltetrahydrofolate and L-homocysteine to tetrahydrofolate and L-methionine as the final step in de novo methionine biosynthesis. The enzyme requires methylcobalamin as a cofactor. In humans, defects in this enzyme are the cause of autosomal recessive inherited methylcobalamin deficiency (CBLG), which causes mental retardation, macrocytic anemia and homocystinuria. Mild deficiencies in activity may result in mild hyperhomocysteinemia, and mutations in the enzyme may be involved in tumorigenesis. Vitamin B12 dependent methionine synthase is found in prokaryotes and eukaryotes, but in prokaryotes the cofactor is cobalamin. This enzyme is a large protein composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and tetrahydrofolate , the third module binds the B12 cofactor , and the C-terminal module (activation domain) binds S-adenosylmethionine. The activation domain is essential for the reductive activation of the enzyme. During the catalytic cycle, the highly reactive cob(I)alamin intermediate can be oxidised to produce an inactive cob(II)alamin enzyme; the enzyme is then reactivated via reductive methylation by the activation domain . The activation domain adopts an unusual alpha/beta fold.Recent studies suggest that this enzyme exists as an ensemble of conformations with equilibria dependent on the oxidation and methylation state of the cobalamin and on the concentrations of substrates or products .; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0050897 cobalt ion binding, 0009086 methionine biosynthetic process.
Probab=96.47 E-value=0.051 Score=35.30 Aligned_cols=258 Identities=15% Similarity=0.164 Sum_probs=146.5
Q ss_pred CCCHHHHH----HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHH--HHHHHCCCCCCCCCCC-CCCCHH------HH
Q ss_conf 86899999----99999997699899986723250108999999986--5431101234430036-741027------89
Q gi|254780276|r 18 LIDEDAFV----EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII--ELCVKTVASRVPVMAG-IGSNNT------RE 84 (292)
Q Consensus 18 ~iD~~~~~----~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~--~~~~~~~~~r~pii~g-v~~~~~------~~ 84 (292)
.|+|+.|+ .-++=|++-|||-|+| |.-.=+.+=|-.|+ +.+-+..+.++||+++ |....+ .+
T Consensus 142 nvtyD~L~~AY~e~~~gL~dGGvDllLi-----ET~fDtLnaKAAlfA~~~~F~~~g~~lPi~iSGti~d~sGr~LsGqt 216 (1265)
T TIGR02082 142 NVTYDELVDAYKEQIKGLLDGGVDLLLI-----ETVFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQT 216 (1265)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCC
T ss_conf 5787989999999999877326035477-----47999999999999999999972897876886026227687202620
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC---HHHCC----CCCCHHHHHHHHHHCC-
Q ss_conf 999753432102443200123433431788999999987530233012100---11111----2111068999743203-
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNN---PSRTV----IEMDVDTMAELAATYP- 156 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~---P~~~g----~~~~~~~l~~L~~~~p- 156 (292)
.-..+.-.+..+++.+ .. =-.+..+++..|.+.|++.+..+|-+|-| |...| +++.|+.+.+..+++=
T Consensus 217 ~~Af~~sl~~~~~~~i--GL--NCAlGpdel~~h~~~Ls~~~~~~Vs~~PNAGLPn~~G~~AeY~l~P~~~A~~l~~fa~ 292 (1265)
T TIGR02082 217 LEAFLASLEHAEILII--GL--NCALGPDELRPHVKELSEHAEAYVSVHPNAGLPNAFGKQAEYDLTPDELAKALKDFAE 292 (1265)
T ss_pred HHHHHHHHCCCCCCEE--CC--CCCCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8999998546873024--12--3114777899999998700881388833788810047776875557899999999998
Q ss_pred ----HHHHHHCCCC-CHHHHHHHH---HHC-CCCEEE--CCCC-CCCHHHHHHHCCCCCCCCC---CCCCCCHHHHHHHH
Q ss_conf ----0233100122-113589999---735-984032--0132-2100124320334455222---23211002444443
Q gi|254780276|r 157 ----NIVGVKDATG-KIELVSEQR---LSC-GFDFIQ--LSGE-DSSALGFNAHGGVGCISVT---ANVVPRICAEFQQA 221 (292)
Q Consensus 157 ----ni~giK~~~~-~~~~~~~~~---~~~-~~~~~v--~~G~-~~~~~~~~~~G~~G~is~~---~n~~P~~~~~l~~~ 221 (292)
|||| =++| .++|++++- +.. |++... +... -...++.+..+-+.-.-.. .|+. -.+++-++
T Consensus 293 eg~lniVG--GCCGTTP~HIraiA~aVk~i~Pr~~~~ta~~~~~~~Sgle~~~~~~~~~FvniGERtNv~--GS~KF~~l 368 (1265)
T TIGR02082 293 EGGLNIVG--GCCGTTPDHIRAIAEAVKDIKPRKRPETALYEPSRLSGLEAITIAQESNFVNIGERTNVA--GSKKFRKL 368 (1265)
T ss_pred HCCEEEEE--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCEEEEEEEECCC--CCHHHHHH
T ss_conf 63903774--268996789999999981687688876556324676303134636635668874300787--68679998
Q ss_pred HCCCCCHHHHHHHHH-HHH---HHHHHHCCC---CHHHHHHHHHHCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 117882799999999-999---999984268---93899999998698899876-788889879899999999998559
Q gi|254780276|r 222 MIRGDYRQALLYQDK-LMP---LHQALFMEP---AVCCVKYALSRLGRNVSLAV-RSPMVSTLEKDTMIAIDQALERLG 292 (292)
Q Consensus 222 ~~~gd~~~A~~l~~~-l~~---l~~~~~~~~---~~~~~K~~l~~~G~~~~~~~-R~Pl~~~~~~e~~~~i~~~l~~lG 292 (292)
+.++||++|..+-.. +.. ++|+.+-++ +.+.+|..+.++--.+ .+ |.|+ =+ |.-+++.|++-||.+|
T Consensus 369 i~aedY~~~L~iAk~QV~~GAQilDiN~D~~~lDg~~~M~~f~~llA~eP--dia~vPl-Ml-DSs~~~vleaGLk~~q 443 (1265)
T TIGR02082 369 IIAEDYDEALDIAKQQVENGAQILDINVDDGMLDGVAAMKRFLNLLASEP--DIAKVPL-ML-DSSEWEVLEAGLKCIQ 443 (1265)
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCC--CCCCCCC-CC-CCCHHHHHHHHHHHCC
T ss_conf 51238468878988871169779898706553673789999999626898--6021360-00-5743799976243038
No 33
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=96.46 E-value=0.049 Score=35.43 Aligned_cols=88 Identities=23% Similarity=0.300 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE---ECCCCCC----CCHHHHHHHHHHH
Q ss_conf 08999999986543110123443003674102789999753432102443200---1234334----3178899999998
Q gi|254780276|r 50 TLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV---VIPYYNK----PNRRGLLAHFGEI 122 (292)
Q Consensus 50 ~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v---~~P~~~~----~~~~~i~~~~~~i 122 (292)
....+++.+.++.+.+.. .+|||+.+.+.+.++-.++++..++.|+|++-+ .||.-.. -.++.+.+-.+.|
T Consensus 83 n~g~e~~l~~i~~~k~~~--~~pvIaSi~g~s~ee~~~~a~~~e~~gadaiElNis~~~~~~~~~~~~~~~~~~~iv~~V 160 (333)
T PRK07565 83 RGGPEEYLELIRRAKEAV--DIPVIASLNGSSAGGWVDYARQIEEAGADALELNIYYLPTDPDISGAEVEQRYLDILRAV 160 (333)
T ss_pred CCCHHHHHHHHHHHHHCC--CCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 868999999999877505--984598747799899999999997649988999766779886544465078899999999
Q ss_pred HHHHCCCCEEEECHHHC
Q ss_conf 75302330121001111
Q gi|254780276|r 123 ATTVSSPIYIYNNPSRT 139 (292)
Q Consensus 123 ~~~~~~pi~iYn~P~~~ 139 (292)
.+++++|+++==.|..+
T Consensus 161 ~~~~~~Pv~vKLsPn~t 177 (333)
T PRK07565 161 KSAVSIPVAVKLSPYFS 177 (333)
T ss_pred HHHCCCCEEEECCCCCC
T ss_conf 86468856873599821
No 34
>PRK08104 consensus
Probab=96.32 E-value=0.12 Score=32.57 Aligned_cols=178 Identities=19% Similarity=0.177 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-|.+.-..+++-+++.|++-+=+. |+.+.-.+.++...+..++ +++|+|.--+ .+.++.|.++|++
T Consensus 24 ~~~~~a~~la~al~~gGi~~iEiT--------lrt~~a~~~I~~l~~~~p~---~~vGaGTV~~---~e~~~~ai~aGA~ 89 (212)
T PRK08104 24 NKLEHAVPLAKALVAGGVRVLEVT--------LRTPCALEAIRAIAKEVPE---AIVGAGTVLN---PQQLAEVTEAGAQ 89 (212)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCHHHHHHHHHHHHCCC---CEEEEEECCC---HHHHHHHHHCCCC
T ss_conf 999999999999998799889996--------8881499999999986898---5685420267---9999999985999
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH----CCCCCHHHHHHH
Q ss_conf 3200123433431788999999987530233012100111112111068999743203023310----012211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK----DATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK----~~~~~~~~~~~~ 174 (292)
.+ +.|. .+.++.++.++ .++|++ | |+ +++..+.+.. +. ....+| +..+-...+..+
T Consensus 90 Fi--VSP~----~~~~v~~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~-G~~~vKlFPA~~~gG~~~lkal 149 (212)
T PRK08104 90 FA--ISPG----LTEELLKAATE----GTIPLI----P---GI-STVSELMLGM-DY-GLTEFKFFPAEANGGVKALQAI 149 (212)
T ss_pred EE--ECCC----CCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCCCCCCCHHHHHHH
T ss_conf 99--8489----99999999998----299765----6---76-9999999999-87-9997997876213749999998
Q ss_pred HHHCCC-CEEECCCCCC-CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 973598-4032013221-00124320334455222232110024444431178827999999999
Q gi|254780276|r 175 RLSCGF-DFIQLSGEDS-SALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKL 237 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~~~-~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l 237 (292)
..-+++ +|..-.|... .+-+++..|...++. -++++|+.. +++|||++-++.-.+.
T Consensus 150 ~~p~p~~~f~ptGGV~~~N~~~yl~~~~v~~vg-GS~l~~~~~------i~~~d~~~I~~~a~~~ 207 (212)
T PRK08104 150 SGPFSQIRFCPTGGITPANYRDYLALKSVLCIG-GSWLVPADA------LEAGDWDRITKLAKEA 207 (212)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHH
T ss_conf 555899818964898988999998079879998-835389999------8748999999999999
No 35
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=96.25 E-value=0.14 Score=32.15 Aligned_cols=257 Identities=14% Similarity=0.176 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC-CCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999769989998672-32501089999999865431101234430036741027899997534321024432
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGT-TGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~-tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i 100 (292)
..+|.++.. .|...+++.-. ..+............ ........|+++++.+.+.+...+-++.+++.|+|+|
T Consensus 11 ~~fR~l~~~---~g~~~l~~TEmv~a~~l~~~~~~~~~~----~~~~~~e~P~~~Ql~G~dp~~~~~aa~~~~~~g~d~I 83 (309)
T pfam01207 11 LPFRRLVRE---YGAGDLVVTEMVTAKAQLRPEKQRELM----LPELEEPTPLAVQLGGSDPALLAEAAKLVADLGADII 83 (309)
T ss_pred HHHHHHHHH---HCCCCEEEECCEEEHHHHCCCHHHHHH----CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 999999999---795929997989971354388758874----2007678972899936999999999999886399989
Q ss_pred CE--ECCCCC----------CCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------
Q ss_conf 00--123433----------431788999999987530233012100111112111068999743203023310------
Q gi|254780276|r 101 LV--VIPYYN----------KPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------ 162 (292)
Q Consensus 101 ~v--~~P~~~----------~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------ 162 (292)
=+ .-|.-. -.+.+.+.+-.+.+.+++++|+-+= -+.|.+-+.+...++++...+ .|++
T Consensus 84 DlN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK---~RlG~d~~~~~~~~~~~~l~~-~G~~~itvH~ 159 (309)
T pfam01207 84 DINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVK---IRIGWDESHENAVEIARRVED-AGAQALTVHG 159 (309)
T ss_pred EEECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEE---EECCCCCCHHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf 651899999987899776254177899999999997558854675---433788763889999999984-6888799967
Q ss_pred -------CCCCCHHHHHHHHHHCCCCEEECCCCCCC---HHHHHH-HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH--
Q ss_conf -------01221135899997359840320132210---012432-0334455222232-110024444431178827--
Q gi|254780276|r 163 -------DATGKIELVSEQRLSCGFDFIQLSGEDSS---ALGFNA-HGGVGCISVTANV-VPRICAEFQQAMIRGDYR-- 228 (292)
Q Consensus 163 -------~~~~~~~~~~~~~~~~~~~~~v~~G~~~~---~~~~~~-~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~-- 228 (292)
....|++.+.++.+..+-.+ +.+|.=.. ....+. .|++|++.|=+.+ -|.+..++.... .|...
T Consensus 160 Rt~~q~~~g~a~w~~i~~~k~~~~ipv-i~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPwif~~~~~~~-~~~~~~~ 237 (309)
T pfam01207 160 RTRAQNYEGPADWDAIKQVKQAVSIPV-IANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQHTVK-TGEFDPR 237 (309)
T ss_pred CCHHHCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHH-CCCCCCC
T ss_conf 632402678654189999998589828-98089488999999986109999998489774988889889997-3997899
Q ss_pred -HHHH---HHHHHHHHH-HHHHCCCCHH-HHHHHHH-HCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHC
Q ss_conf -9999---999999999-9984268938-9999999-8698899876788889879-89999999999855
Q gi|254780276|r 229 -QALL---YQDKLMPLH-QALFMEPAVC-CVKYALS-RLGRNVSLAVRSPMVSTLE-KDTMIAIDQALERL 291 (292)
Q Consensus 229 -~A~~---l~~~l~~l~-~~~~~~~~~~-~~K~~l~-~~G~~~~~~~R~Pl~~~~~-~e~~~~i~~~l~~l 291 (292)
...+ +..+..... +.......+. ..|+..+ ..|+.-....|.=+....+ .|....++++|+..
T Consensus 238 ~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~rk~~~~y~kg~~ga~~~R~~l~~~~~~~e~~~~le~~l~~~ 308 (309)
T pfam01207 238 PPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYLKGFPGAAELRRELNDVFDPTEALINLDAALRAA 308 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 98689999999999999998758986999999999997799788999999836999999999999999851
No 36
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.24 E-value=0.088 Score=33.58 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=50.4
Q ss_pred EECCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC---------CCHHCCCHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 111201773-89888689999999999997699899986723---------250108999999986543110123-4430
Q gi|254780276|r 5 SIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT---------GESSTLSHEEHCRIIELCVKTVAS-RVPV 73 (292)
Q Consensus 5 i~~~~~TPf-~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t---------GE~~~Ls~~Er~~~~~~~~~~~~~-r~pi 73 (292)
+++|+.+-+ +.||.+....+.-+-++ ...|+ |+.+.+.+ .....+..+|...-++.+++.+.. ..++
T Consensus 16 v~apm~~~~a~~~G~pt~~~~~yy~~r-A~gG~-GLIite~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~G~~i 93 (327)
T cd02803 16 VMAPMTENMATEDGTPTDELIEYYEER-AKGGV-GLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKI 93 (327)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHH-HCCCC-EEEEECCEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEE
T ss_conf 881418573458999999999999999-74996-1799877787651247999750362354788879988763279879
Q ss_pred CCCCCC-------------------------------CH-------HHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 036741-------------------------------02-------78999975343210244320012
Q gi|254780276|r 74 MAGIGS-------------------------------NN-------TRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 74 i~gv~~-------------------------------~~-------~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
+++..+ .+ .++-.+-|+.|+++|+|+|.+..
T Consensus 94 ~~QL~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~A~~AGfDgVEIh~ 162 (327)
T cd02803 94 FAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHG 162 (327)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 987202765567444689988877544456898886299999999999999999999984999899835
No 37
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=96.23 E-value=0.094 Score=33.36 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+...+.++-+++.|++-+=+. |+.+.-.+.++...+..++ +++|+|+--+. +.++.|.++|++
T Consensus 17 ~~~~~a~~~~~al~~~Gi~~iEiT--------l~t~~a~~~I~~l~~~~p~---~~iGaGTV~~~---e~~~~a~~aGA~ 82 (196)
T pfam01081 17 KDKEDALPLAEALAAGGIRVLEVT--------LRTPCALDAIRLLRKNRPD---ALVGAGTVLNA---QQLAEAAEAGAQ 82 (196)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCHHHHHHHHHHHHHCCC---CEEEEEECCCH---HHHHHHHHCCCC
T ss_conf 999999999999998799889994--------7982799999999964999---67999837689---999999974999
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ +.| ..+.++.++.++ .++|.+ | |+ +++..+.+.. +. ....+|- ..|-...+..+
T Consensus 83 Fi--vSP----~~~~~v~~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~-G~~~vKlFPA~~~Gg~~~lkal 142 (196)
T pfam01081 83 FV--VSP----GLTADLLKHAVD----VKIPLI----P---GV-STPSEIMLGL-DL-GLTRFKFFPAEASGGVPAIKAL 142 (196)
T ss_pred EE--ECC----CCHHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCCHHCCCHHHHHHH
T ss_conf 99--978----763999999997----399663----7---85-9999999999-87-9998997873101849999998
Q ss_pred HHHCCC-CEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 973598-40320132-21001243203344552222321100244444311788279999
Q gi|254780276|r 175 RLSCGF-DFIQLSGE-DSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALL 232 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~-~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~ 232 (292)
+.-+++ +|..-.|. ...+-+++..|+..+..| ++++|+.. .+++||++-.+
T Consensus 143 ~~p~p~~~f~ptGGv~~~N~~~yl~~g~v~~~~G-S~l~~~~l------i~~~d~~~It~ 195 (196)
T pfam01081 143 AGPFPQVRFCPTGGIHPANVRDYLALPNILCVGG-SWLVPASL------IQKGDWDRITA 195 (196)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEC-HHHCCHHH------HHCCCHHHHHC
T ss_conf 5779998699807989888999996898699989-36489889------87199877643
No 38
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.13 E-value=0.072 Score=34.20 Aligned_cols=215 Identities=12% Similarity=0.031 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC----------CCCCHHHHHHHHHHHHHHH--CCCCEEE
Q ss_conf 23443003674102789999753432102443200--12343----------3431788999999987530--2330121
Q gi|254780276|r 68 ASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY----------NKPNRRGLLAHFGEIATTV--SSPIYIY 133 (292)
Q Consensus 68 ~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~----------~~~~~~~i~~~~~~i~~~~--~~pi~iY 133 (292)
+...|+.+++.+.+.+...+-++.+.+.|+++|=+ .-|.- .-...+-+.+..+.+.+++ ++|+-+=
T Consensus 60 ~~~~Pv~vQl~G~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK 139 (312)
T PRK10550 60 PSGTLVRIQLLGQYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVK 139 (312)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 77883688842788899999999999769996625479997896689926853289779999999999745878995477
Q ss_pred ECHHHCCCCCCHH--HHHHHHHHCCHHHHH---------HCCC--CCHHHHHHHHHHCCCCEEECCCCCCCH---HHH-H
Q ss_conf 0011111211106--899974320302331---------0012--211358999973598403201322100---124-3
Q gi|254780276|r 134 NNPSRTVIEMDVD--TMAELAATYPNIVGV---------KDAT--GKIELVSEQRLSCGFDFIQLSGEDSSA---LGF-N 196 (292)
Q Consensus 134 n~P~~~g~~~~~~--~l~~L~~~~pni~gi---------K~~~--~~~~~~~~~~~~~~~~~~v~~G~~~~~---~~~-~ 196 (292)
-+.|.+-+.. .+.++..+.+ +..+ .++. .|++.+.++.+..+-. .+.+|.=... ... -
T Consensus 140 ---~RlG~~~~~~~~e~~~~~~~~G-~~~ltvH~RT~~q~y~~~~~dw~~i~~~~~~~~iP-vi~NGdI~s~~d~~~~~~ 214 (312)
T PRK10550 140 ---VRLGWDSGDRKFEIADAVQQAG-ATELVVHGRTKEQGYRAEHIDWQAIGEIRQRLTIP-VIANGEIWDWQSAQQCMA 214 (312)
T ss_pred ---EECCCCCCCHHHHHHHHHHHCC-CCEEEEECCCHHHCCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCHHHHHHHHH
T ss_conf ---5358998631999999999739-98799905526535899834899999999748998-997079599999999987
Q ss_pred HHCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHH--HCCCCCCCCCCCC
Q ss_conf 20334455222232-11002444443117882799999999999999984268--9389999999--8698899876788
Q gi|254780276|r 197 AHGGVGCISVTANV-VPRICAEFQQAMIRGDYRQALLYQDKLMPLHQALFMEP--AVCCVKYALS--RLGRNVSLAVRSP 271 (292)
Q Consensus 197 ~~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~~~~~--~~~~~K~~l~--~~G~~~~~~~R~P 271 (292)
..|++|++.|=+.+ .|.+...+-..-..-.|++..++..+...+... +..+ .+.-+|.++. ..|++.+...|.=
T Consensus 215 ~tg~dgvMiGRgal~nP~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~rmKk~~~~~~~~~p~a~~lr~~ 293 (312)
T PRK10550 215 ISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQ-GDTGLYHVARIKQWLGYLRKEYDEATELFQE 293 (312)
T ss_pred HHCCCEEEECHHHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 148999996585530977999861379999989999999999999863-3103668999999999998609969999999
Q ss_pred CCCCCCHHHHHHHHHHHHHC
Q ss_conf 88987989999999999855
Q gi|254780276|r 272 MVSTLEKDTMIAIDQALERL 291 (292)
Q Consensus 272 l~~~~~~e~~~~i~~~l~~l 291 (292)
+....+ .++++++++++
T Consensus 294 i~~~~~---~~e~~~~l~~l 310 (312)
T PRK10550 294 IRALNN---SPDIARAIQAI 310 (312)
T ss_pred HHHCCC---HHHHHHHHHHH
T ss_conf 984399---99999999863
No 39
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.10 E-value=0.1 Score=33.15 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=76.6
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHH-------------------------------CCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999976998999867232501-------------------------------0899999998654311012344300
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTGESS-------------------------------TLSHEEHCRIIELCVKTVASRVPVM 74 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tGE~~-------------------------------~Ls~~Er~~~~~~~~~~~~~r~pii 74 (292)
+.++++.+.|..++.+...|-|-. +...++..+.++...+.. .+.|++
T Consensus 24 ~~~~~~~~~G~G~vv~ktit~~~~~gn~~Pr~~~~~~~~~~~~~~~~~~N~~g~~n~g~~~~~~~l~~~~~~~-~~~pli 102 (289)
T cd02810 24 ELIARAAAAGFGAVVYKTVTLHPRPGNPLPRVARLPPEGESYPEQLGILNSFGLPNLGLDVWLQDIAKAKKEF-PGQPLI 102 (289)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHCC-CCCEEE
T ss_conf 9999999769878992735722015898751887036665675510362155467878899999999998617-995399
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCCC-----CCCHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 3674102789999753432102443200--123433-----43178899999998753023301210011
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLV--VIPYYN-----KPNRRGLLAHFGEIATTVSSPIYIYNNPS 137 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~~-----~~~~~~i~~~~~~i~~~~~~pi~iYn~P~ 137 (292)
+.+++.+.++-.+.++..+++|+|++-+ ..|..- .-+.+.+.+..+.|.+++++|+++==-|.
T Consensus 103 ~Si~~~~~~~~~~~a~~~~~~gad~lElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKLsp~ 172 (289)
T cd02810 103 ASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPY 172 (289)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 9788898789999999999847984899840367565532014999999999999860268748842788
No 40
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.10 E-value=0.053 Score=35.18 Aligned_cols=145 Identities=22% Similarity=0.251 Sum_probs=86.3
Q ss_pred ECCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-H
Q ss_conf 1120177389888689999-9999999976998999867232501089999999865431101234430036741027-8
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAF-VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT-R 83 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~-~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~-~ 83 (292)
+|.+++++|- |+-.-..+ +++.+-.-+.|+. +..|| .-..|...+..+-++.+.+.++ +.++++.++...+ .
T Consensus 61 ~P~~I~aMTG-G~~~~~~IN~~LA~~A~~~gi~--m~vGS--qr~al~~~~~~~sf~vvR~~~p-~~~l~aNiGa~~~~~ 134 (351)
T PRK05437 61 APFLINAMTG-GSEKAKEINRKLAEAAEELGIA--MGVGS--QRAALKDPELADSFSVVRKVAP-DGLLFANIGAVQLYG 134 (351)
T ss_pred CCEEEECCCC-CCHHHHHHHHHHHHHHHHCCCC--EEECC--HHHHHCCHHHHHHHHHHHHHCC-CCEEEEECCCCCCCC
T ss_conf 8768865346-8754628999999999983987--77331--7888539145656999998688-873886127210143
Q ss_pred HHHHHHHHH-HHCCCCCCCEECCCC----CCC---CHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf 999975343-210244320012343----343---178899999998753023301210011111211106899974320
Q gi|254780276|r 84 ESVELAQYA-HSIGADALLVVIPYY----NKP---NRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY 155 (292)
Q Consensus 84 ~~i~~a~~a-~~~Gad~i~v~~P~~----~~~---~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~ 155 (292)
...+.++.+ +.++||++.+..-.- .+- +-.+..+-.+.+.+.+++||++=. +|+.|+.++..+|. ++
T Consensus 135 ~~~~~~~~av~~i~AdAl~iHlN~~QEl~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKe----VG~Gis~e~a~~l~-~~ 209 (351)
T PRK05437 135 YGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDRIAEIVSALPVPVIVKE----VGFGISKETAKRLA-DA 209 (351)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHH-HC
T ss_conf 58999999999716781575246245402888897788999999999986799889852----15788999999999-67
Q ss_pred CHHHHHH
Q ss_conf 3023310
Q gi|254780276|r 156 PNIVGVK 162 (292)
Q Consensus 156 pni~giK 162 (292)
+ |.+|-
T Consensus 210 G-v~~Id 215 (351)
T PRK05437 210 G-VKAID 215 (351)
T ss_pred C-CCEEE
T ss_conf 9-99999
No 41
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=96.10 E-value=0.11 Score=32.96 Aligned_cols=135 Identities=19% Similarity=0.181 Sum_probs=94.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEC----------CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHH
Q ss_conf 689999999999997699899986----------723250108999999986543110123443003----674102789
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPA----------GTTGESSTLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRE 84 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~----------G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~ 84 (292)
=|.+.+.+-++...+.|+++|=++ +..|-+..-+.+.-.++++.+++.++ +||-+ |.. .+.+.
T Consensus 63 ~dp~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~~~~~~--~PVtvK~RlG~d-~~~~~ 139 (309)
T pfam01207 63 SDPALLAEAAKLVADLGADIIDINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVD--IPVTVKIRIGWD-ESHEN 139 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHHHHHCC--CCEEEEEECCCC-CCHHH
T ss_conf 999999999999886399989651899999987899776254177899999999997558--854675433788-76388
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCC-CCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC
Q ss_conf 9997534321024432001234334-317889999999875302330121001111121110689997432030233100
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNK-PNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD 163 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~-~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~ 163 (292)
++++++.+++.|++++.|.+-.-.. .+..-=.++.+++.++.++|++. .|-..+.+...++.+. .++-|+=-
T Consensus 140 ~~~~~~~l~~~G~~~itvH~Rt~~q~~~g~a~w~~i~~~k~~~~ipvi~------NGdi~~~~d~~~~l~~-tg~dgvMi 212 (309)
T pfam01207 140 AVEIARRVEDAGAQALTVHGRTRAQNYEGPADWDAIKQVKQAVSIPVIA------NGDITDAEDAQRCLSY-TGADGVMI 212 (309)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCEEE------ECCCCCHHHHHHHHHH-HCCCEEEE
T ss_conf 9999999984688879996763240267865418999999858982898------0894889999999861-09999998
No 42
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=96.07 E-value=0.17 Score=31.53 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-|.+.....++-+++.|++-+=+. |+.+.-.+.++...++.++ +++|+|.--+ .+.++.|.++||+
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEIT--------lrt~~a~~~I~~l~~~~p~---~~vGaGTVl~---~e~~~~a~~aGA~ 89 (212)
T PRK06015 24 DDVEHAVPLARALARGGLPAIEIT--------LRTPAALDAIRAVAAEVEE---AIVGAGTILN---AKQFEDAAKAGSR 89 (212)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCCHHHHHHHHHHHCCC---CEEEEEECCC---HHHHHHHHHCCCC
T ss_conf 999999999999998799889996--------8995199999999986999---6795421156---9999999984998
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ +.| ..+.++.++.++ .++|.+ | |+ +++..+.+.. +.. ...+|- ..+-...+..+
T Consensus 90 Fi--VSP----~~~~~v~~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~G-~~~vKlFPA~~~gG~~~lkal 149 (212)
T PRK06015 90 FI--VSP----GTTQELLAAAND----SDVPLL----P---GA-ITPSEVMALR-EEG-YTVLKFFPAEQAGGAAFLKAL 149 (212)
T ss_pred EE--ECC----CCCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HCC-CCEEEECCCCCCCCHHHHHHH
T ss_conf 99--858----999999999998----399773----7---86-9999999999-879-998997843001689999998
Q ss_pred HHHCCC-CEEECCCCC-CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 973598-403201322-1001243203344552222321100244444311788279999999999
Q gi|254780276|r 175 RLSCGF-DFIQLSGED-SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLM 238 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~~-~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~ 238 (292)
..-+++ +|..-.|.. ..+-+++..+...++. -+.++|+.. +.+|||++..+.-..-.
T Consensus 150 ~~p~p~~~~~ptGGV~~~N~~~yl~~~~v~~vg-Gs~l~~~~~------i~~~dw~~I~~~a~ea~ 208 (212)
T PRK06015 150 SSPLAGTFFCPTGGISLKNARDYLSLPNVVCVG-GSWVAPKEL------VAAGDWAAITKLAAEAA 208 (212)
T ss_pred HCCCCCCCEEECCCCCHHHHHHHHCCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHHH
T ss_conf 577999988862898988899998089819998-835389999------97189999999999999
No 43
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.03 E-value=0.052 Score=35.25 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=32.0
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-----C----CHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 11120177389888689999999999997699899986723-----2----5010899999998654311012
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT-----G----ESSTLSHEEHCRIIELCVKTVA 68 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t-----G----E~~~Ls~~Er~~~~~~~~~~~~ 68 (292)
+++|+.|-..+||.+....+.-+.+ ....|+ |+.+.+.+ | ....+..+|...-++.+++.+.
T Consensus 17 v~apm~~~~~~dG~pt~~~~~yy~~-rA~gG~-GlIite~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avh 87 (336)
T cd02932 17 VVSPMCQYSAEDGVATDWHLVHYGS-RALGGA-GLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIH 87 (336)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHH-HHCCCC-CEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 8687576818899899999999999-975997-3899745586612056998656567999999999999998
No 44
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.03 E-value=0.13 Score=32.23 Aligned_cols=258 Identities=14% Similarity=0.113 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999976998999867232501089999999865431101234430036741027899997534321024432
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i 100 (292)
-..+|.++..+ |++-.+.-=...+.. +...++.++ .. .......|+.+++.+.+.++..+-++.+.+.|+|+|
T Consensus 22 d~~FR~l~~~~---Ga~l~~TEmv~a~~~-~~~~~~~~~-~~--~~~~~~~~~~vQl~G~dp~~~a~Aa~~~~~~g~~~I 94 (321)
T PRK10415 22 DRPFRTLCYEM---GAGLTVSEMMSSNPQ-VWESDKSRL-RM--VHVDEPGIRTVQIAGSDPKEMADAARINVESGAQII 94 (321)
T ss_pred CHHHHHHHHHH---CCCEEEECCEEECHH-HHCCHHHHH-HH--CCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 89999999998---839999875871277-733848898-63--046788980599726999999999998876499989
Q ss_pred CE--ECCCC----------CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHH---HHHHHHHCCHHHHHH---
Q ss_conf 00--12343----------3431788999999987530233012100111112111068---999743203023310---
Q gi|254780276|r 101 LV--VIPYY----------NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDT---MAELAATYPNIVGVK--- 162 (292)
Q Consensus 101 ~v--~~P~~----------~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~---l~~L~~~~pni~giK--- 162 (292)
=+ .-|.- .-.+.+-+.+-.+.+.+++++|+-+= -+.|.+-+... +.+++.+. .+..+-
T Consensus 95 DiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~iPVTvK---iRlG~~~~~~~~~~~~~~~e~a-G~~~itvHg 170 (321)
T PRK10415 95 DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLK---IRTGWAPEHRNCEEIAQLAEDC-GIQALTIHG 170 (321)
T ss_pred EEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCCCCEEEE---EECCCCCCHHHHHHHHHHHHHC-CCCEEEEEH
T ss_conf 431899989970798365063398999999999973448746999---8468885224399999999856-988999972
Q ss_pred -------CCCCCHHHHHHHHHHCCCCEEECCCCCCCH---HHHHH-HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCC---
Q ss_conf -------012211358999973598403201322100---12432-0334455222232-11002444443117882---
Q gi|254780276|r 163 -------DATGKIELVSEQRLSCGFDFIQLSGEDSSA---LGFNA-HGGVGCISVTANV-VPRICAEFQQAMIRGDY--- 227 (292)
Q Consensus 163 -------~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~---~~~~~-~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~--- 227 (292)
....|++.+.++....+-.+ +.+|.=... ...+. .|++|++.|=+.+ -|.+..++-+.+..|+.
T Consensus 171 RT~~q~y~g~adw~~i~~vk~~~~iPv-i~NGDI~~~~da~~~l~~tg~dgvMigRgal~nPwiF~~i~~~l~~g~~~~~ 249 (321)
T PRK10415 171 RTRACLFNGEAEYDSIRAVKQKVSIPV-IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPP 249 (321)
T ss_pred HHHHHHHCCCCCHHHHHHHHHCCCCCE-EECCCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 213443169987799999985479978-9658919999999999862999999756653698779999999816997999
Q ss_pred ---HHHHHHH-HHHHHHHHHHHCCCCHHH-HHHHH-HHCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHH
Q ss_conf ---7999999-999999999842689389-99999-986988998767888898798-999999999985
Q gi|254780276|r 228 ---RQALLYQ-DKLMPLHQALFMEPAVCC-VKYAL-SRLGRNVSLAVRSPMVSTLEK-DTMIAIDQALER 290 (292)
Q Consensus 228 ---~~A~~l~-~~l~~l~~~~~~~~~~~~-~K~~l-~~~G~~~~~~~R~Pl~~~~~~-e~~~~i~~~l~~ 290 (292)
++-.++. ..+..+.+......+... -|++. ...|+.-+...|.=+....+. +..+.|++-+|.
T Consensus 250 ~~~~e~~~~~~~h~~~~~~~~g~~~~~~~~Rkh~~~Y~kg~~g~~~~R~~~~~~~~~~ev~~~l~~~~e~ 319 (321)
T PRK10415 250 LPLAEVKRLLCAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFEN 319 (321)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 6999999999999999999869075699999789999588987699999997489999999999999984
No 45
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=96.01 E-value=0.088 Score=33.59 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
.+..+.-.++++.|.+.||+-|=++ ++.++.+|+..+-+ ..+..- +..+. +-+....+| .+.+.++|+
T Consensus 22 ~fs~~~K~~ia~~L~~~GV~~IEvG-----~P~~~~~e~~~~~~-i~~~~l-~~~i~-~~~R~~~~d----i~~a~~~g~ 89 (378)
T PRK11858 22 VFTNEEKLAIARMLDEIGVDQIEAG-----FPAVSEDEKEAIKA-IAKLGL-NASIL-AWNRAVKSD----IDASIDCGV 89 (378)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE-----CCCCCCCHHHHHHH-HHHCCC-CCEEE-EECCCCHHH----HHHHHHCCC
T ss_conf 9999999999999998198999994-----77778348999999-985679-84588-740357877----999985796
Q ss_pred CCCCEECCCC-------CCCCHHHHHHHHHHHHHHH-CCCC-EEEECHHHCCCCCCHHHHHHHHHHC----CHHHHHHCC
Q ss_conf 4320012343-------3431788999999987530-2330-1210011111211106899974320----302331001
Q gi|254780276|r 98 DALLVVIPYY-------NKPNRRGLLAHFGEIATTV-SSPI-YIYNNPSRTVIEMDVDTMAELAATY----PNIVGVKDA 164 (292)
Q Consensus 98 d~i~v~~P~~-------~~~~~~~i~~~~~~i~~~~-~~pi-~iYn~P~~~g~~~~~~~l~~L~~~~----pni~giK~~ 164 (292)
+.+.+..|.- ++.+.+++.+-..+..+.+ +..+ +-++.+..+. -+++.+.++++.. ...+.+.|+
T Consensus 90 ~~v~i~~~~Sd~h~~~~l~~t~~e~l~~~~~~v~~Ak~~Gl~v~f~~eD~~r--~~~~~l~~~~~~a~~~Gad~I~l~DT 167 (378)
T PRK11858 90 DAVHIFIATSDIHLKYKLKKTREEVLERLVEAVEYAKDHGLYVSFSAEDASR--TDLDFLIEAAKAAEEAGADRVRFCDT 167 (378)
T ss_pred CEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC--CCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9899996067999999968998999999999999999769869994401256--89999999999999749989996365
Q ss_pred CCC--HHH----HHHHHHHCCCCEEECCCCCCC------HHHHHHHCCC---CCCCCC
Q ss_conf 221--135----899997359840320132210------0124320334---455222
Q gi|254780276|r 165 TGK--IEL----VSEQRLSCGFDFIQLSGEDSS------ALGFNAHGGV---GCISVT 207 (292)
Q Consensus 165 ~~~--~~~----~~~~~~~~~~~~~v~~G~~~~------~~~~~~~G~~---G~is~~ 207 (292)
.|- +.. +..+++..+-.+.+ -+++.. .+.++..|++ +++.|+
T Consensus 168 ~G~~~P~~v~~~v~~l~~~~~~~i~~-H~HNd~GlAvANalaAv~AGa~~v~~Tv~Gi 224 (378)
T PRK11858 168 VGILDPFTMYELVKELVEAVDIPIEV-HCHNDFGMATANAIAGIEAGATQVHTTVNGL 224 (378)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEE-EEECCCCHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 56669999999999999726985599-9707755599999999980999899875446
No 46
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=95.98 E-value=0.18 Score=31.26 Aligned_cols=123 Identities=20% Similarity=0.140 Sum_probs=79.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCCCCC-CCCCCHHH
Q ss_conf 2017738988868999999999999769989998672325010899999998654311012---3443003-67410278
Q gi|254780276|r 8 ALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVPVMA-GIGSNNTR 83 (292)
Q Consensus 8 ~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~pii~-gv~~~~~~ 83 (292)
-+-|-++-.--++.+.+.+.+.-+...|+|=+====......+...+||...+..+++.+. |+..+++ .+++ .+.
T Consensus 141 LlgtiiKP~~Gls~~~~a~~~~e~~~GG~DfIKDDE~l~~q~~~p~~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~ 219 (407)
T TIGR03332 141 LLMSIFKGMIGRDLGYLKEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAVNLTG-RTF 219 (407)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CHH
T ss_conf 4677626755799899999999996057762427555679878989999999999999999985985469985388-989
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEECHHHCC
Q ss_conf 9999753432102443200123433431788999999987530--23301210011111
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV--SSPIYIYNNPSRTV 140 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~--~~pi~iYn~P~~~g 140 (292)
+.+++++.++++|+.++|+-+-.+ . +.-++.+++.. .+||+.+ |...|
T Consensus 220 em~~ra~~a~e~G~~~vmv~~~~~-G------~~a~~~L~~~~~~~lpI~aH--ra~~g 269 (407)
T TIGR03332 220 DLKDKAKRAAELGADVLLFNVFAY-G------LDVLQSLAEDDEIPVPIMAH--PAVSG 269 (407)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCC-C------HHHHHHHHHCCCCCCEEEEE--CCCCE
T ss_conf 999999999975998899957655-5------99999998478988438873--14433
No 47
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.95 E-value=0.18 Score=31.34 Aligned_cols=180 Identities=16% Similarity=0.073 Sum_probs=105.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
..|.+.....++-+++.|++-+=+. |+...-.+.++...+..++.--+++|+|.--+. +.++.|.++|+
T Consensus 21 ~~~~~~a~~~~~al~~gGi~~iEIT--------l~tp~a~~~i~~l~~~~~~~p~~~iGaGTV~~~---e~~~~a~~aGA 89 (209)
T PRK06552 21 GESKEEALKISLAVIKGGIKAIEVT--------YTNPFASEVIKELVERYKDDPEVLIGAGTVLDA---VTARQAILAGA 89 (209)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE--------CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCH---HHHHHHHHCCC
T ss_conf 2899999999999998799889996--------789759999999999817799818988727489---99999998599
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC---CCCCHHHHHHH
Q ss_conf 432001234334317889999999875302330121001111121110689997432030233100---12211358999
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD---ATGKIELVSEQ 174 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~---~~~~~~~~~~~ 174 (292)
+.+ +.|. .+.++.++.+ ..++|.+ | |+ +++..+.+.. +. ....+|- +..-...+..+
T Consensus 90 ~Fi--VSP~----~~~~v~~~a~----~~~i~~i----P---G~-~TpsEi~~A~-~~-Ga~~vKlFPA~~~G~~yikal 149 (209)
T PRK06552 90 QFI--VSPS----FNRETAKICN----RYQIPYL----P---GC-MTVTEIVTAL-EA-GVDIVKLFPGSTVGPSFISAI 149 (209)
T ss_pred CEE--ECCC----CCHHHHHHHH----HCCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCHHHCCHHHHHHH
T ss_conf 889--7699----9899999999----8599641----7---97-9999999999-86-999588583332489999998
Q ss_pred HHHCCC-CEEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 973598-40320132-2100124320334455222232110024444431178827999999999
Q gi|254780276|r 175 RLSCGF-DFIQLSGE-DSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKL 237 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~-~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l 237 (292)
+.-+++ +|..-.|. .+.+-+++..|+.++-.|. ++. +..+++||++.++.-.++
T Consensus 150 ~~p~p~~~~~ptGGV~~~N~~~~l~aG~~~vgvGs-~l~--------~~~~~~d~~~I~~~A~~~ 205 (209)
T PRK06552 150 KGPLPQVNIMVTGGVSLDNVKDWFAAGADAVGIGG-ELN--------KLASQGDYDLITEKAAKY 205 (209)
T ss_pred HCCCCCCCEEECCCCCHHHHHHHHHCCCCEEEECH-HHC--------CCHHCCCHHHHHHHHHHH
T ss_conf 66489992886389998889999987998899865-770--------825418999999999999
No 48
>PRK08904 consensus
Probab=95.90 E-value=0.19 Score=31.19 Aligned_cols=180 Identities=16% Similarity=0.130 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-|.+.-..+++-+++.|++-+=+. |+...-.+.++...+..++ +++|+|.--+ .+.++.|.++|++
T Consensus 19 ~~~~~a~~~a~al~~~Gi~~iEiT--------lrtp~a~~~i~~l~~~~p~---~~vGaGTVl~---~e~~~~a~~aGA~ 84 (207)
T PRK08904 19 DDLSTAVDLSRALVEGGIPTLEIT--------LRTPVGLDAIRLIAKEVPN---AIVGAGTVTN---PEQLKAVEDAGAV 84 (207)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCHHHHHHHHHHHHCCC---CEEEEEECCC---HHHHHHHHHCCCC
T ss_conf 999999999999998799889995--------7991399999999986898---7685531368---9999999984999
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ +.| ..++++.++.++ .++|.+ | |+ +++..+.+.. +. ....+|. ..|-...+..+
T Consensus 85 Fi--VSP----~~~~~v~~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~-G~~~vK~FPA~~~GG~~~lkal 144 (207)
T PRK08904 85 FA--ISP----GLHESLAKAGHN----SGIPLI----P---GV-ATPGEIQLAL-EH-GIDTLKLFPAEVVGGKAMLKAL 144 (207)
T ss_pred EE--ECC----CCCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCCHHCCCHHHHHHH
T ss_conf 99--848----998999999998----399765----7---86-9999999999-87-9998997762220889999987
Q ss_pred HHHCCC-CEEECCCCC-CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 973598-403201322-10012432033445522223211002444443117882799999999999
Q gi|254780276|r 175 RLSCGF-DFIQLSGED-SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 175 ~~~~~~-~~~v~~G~~-~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
..-+++ +|..-.|.. ..+-+++..+...++. -++++|+.. +++|||++-.+.-.+...
T Consensus 145 ~~pfp~i~~~pTGGV~~~N~~~yl~~~~v~~vg-GS~l~~~~~------i~~~d~~~I~~~a~~a~~ 204 (207)
T PRK08904 145 YGPYADVRFCPTGGISLATAPEYLALPNVLCVG-GSWLTPKEA------VKNKDWDTITRLAKEAAA 204 (207)
T ss_pred HCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHHHH
T ss_conf 465999808865898987899998189849998-814389999------974899999999999972
No 49
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=95.89 E-value=0.2 Score=30.97 Aligned_cols=259 Identities=12% Similarity=0.083 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHC---CCCEEEECCCCCCHHCCCHHHHHH--HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH-HHHHC
Q ss_conf 9999999999976---998999867232501089999999--86543110123443003674102789999753-43210
Q gi|254780276|r 22 DAFVEHIEWQITE---GSGGLVPAGTTGESSTLSHEEHCR--IIELCVKTVASRVPVMAGIGSNNTRESVELAQ-YAHSI 95 (292)
Q Consensus 22 ~~~~~~i~~l~~~---gv~gi~~~G~tGE~~~Ls~~Er~~--~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~-~a~~~ 95 (292)
..||+++..+-.. -|.||+++ |+.+...-=+.. -.........+-.|+=++..+.+.+.+.|-|| -.++.
T Consensus 21 ~~FR~l~~~~~~skvGtvagL~~~----EMvs~~~~~~~~r~~~~~~~~~~~~~~~~~~Ql~Gs~P~~~aeAAk~i~~~~ 96 (336)
T TIGR00737 21 LAFRRLVAEYGQSKVGTVAGLTVS----EMVSSEAIVYKSRERTKKLLDIDEDETPISVQLFGSDPDTMAEAAKLINEEL 96 (336)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEE----CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCC
T ss_conf 178999998521443312410022----2004537886235557765321258885478764788268999999985305
Q ss_pred CCCCCCE--ECCCC--C--------CCCHHHHHHHHHHHHHHHC---CCCEEEECHHHCCCC---CCHHHHHHHHHHCCH
Q ss_conf 2443200--12343--3--------4317889999999875302---330121001111121---110689997432030
Q gi|254780276|r 96 GADALLV--VIPYY--N--------KPNRRGLLAHFGEIATTVS---SPIYIYNNPSRTVIE---MDVDTMAELAATYPN 157 (292)
Q Consensus 96 Gad~i~v--~~P~~--~--------~~~~~~i~~~~~~i~~~~~---~pi~iYn~P~~~g~~---~~~~~l~~L~~~~pn 157 (292)
|||.|=+ .-|.- . .-.++-+.+=++++.++++ +||-+ .-|+|-+ +..+...|++++- .
T Consensus 97 ga~~IDiN~GCP~~Kitk~~aGsaLl~~p~~~~~iv~~vV~AV~~~~iPVTV---K~R~GWD~~h~n~~~~a~~a~~~-G 172 (336)
T TIGR00737 97 GADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDAQDIPVTV---KIRIGWDDAHINAVEAARIAEDA-G 172 (336)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEE---EEECCCCCCCCCHHHHHHHHHHC-C
T ss_conf 8988853676548842167635432358689999999999875187665166---55156362448889999999872-4
Q ss_pred HHHHH----------CCCCCHHHHHHHHHHCCCC--EEECCCCCCC-H---HHHHH-HCCCCCCCCCCCC-CCCHHHHHH
Q ss_conf 23310----------0122113589999735984--0320132210-0---12432-0334455222232-110024444
Q gi|254780276|r 158 IVGVK----------DATGKIELVSEQRLSCGFD--FIQLSGEDSS-A---LGFNA-HGGVGCISVTANV-VPRICAEFQ 219 (292)
Q Consensus 158 i~giK----------~~~~~~~~~~~~~~~~~~~--~~v~~G~~~~-~---~~~~~-~G~~G~is~~~n~-~P~~~~~l~ 219 (292)
+.++= +..-+++.+.+++...... +-||.-.|-. . -..|. -|+||.+.|=|.. .|.+..++-
T Consensus 173 a~Av~lHGRTRaQ~Y~G~A~wd~I~~vKq~v~~~GeiPVigNGDi~~~~~A~~~L~~TG~DGvm~gRG~lG~PWl~~~i~ 252 (336)
T TIGR00737 173 AQAVTLHGRTRAQGYEGEANWDIIARVKQAVRKEGEIPVIGNGDIFSPEDAKAMLETTGADGVMIGRGALGNPWLFKQIE 252 (336)
T ss_pred CCEEEHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHHHHHHCCCCEEEEECHHCCCCHHHHHHH
T ss_conf 00021110000015788760689999999971687533222774246789999986378868985002227875899999
Q ss_pred HHHCCCCCHHHHH-------HHHHHHHHHHHHH-CCCC-HHHHHHHHH-HCCCCCCCCCCCCCCCCCCH-HHHHHHHHHH
Q ss_conf 4311788279999-------9999999999984-2689-389999999-86988998767888898798-9999999999
Q gi|254780276|r 220 QAMIRGDYRQALL-------YQDKLMPLHQALF-MEPA-VCCVKYALS-RLGRNVSLAVRSPMVSTLEK-DTMIAIDQAL 288 (292)
Q Consensus 220 ~~~~~gd~~~A~~-------l~~~l~~l~~~~~-~~~~-~~~~K~~l~-~~G~~~~~~~R~Pl~~~~~~-e~~~~i~~~l 288 (292)
+++..|.+.+.-. ++..+..|.+... ...+ ...-|.+.+ +.|.......|.-+....+. |.+..|++..
T Consensus 253 ~yL~tG~~~~~p~~~ek~~~~~~H~~~l~~~yGse~~g~~~~RKh~~wYl~g~~~~~~~R~~~~~~~~~~E~~~ll~~~~ 332 (336)
T TIGR00737 253 QYLTTGKYKPPPTLAEKLDAILRHLQLLADYYGSESKGLRIARKHIAWYLKGFPGNAALRQTLNKISSFQEVKQLLDDFE 332 (336)
T ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99726877889888999999999999999983780346889999999986226634799999970489889999999974
No 50
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=95.83 E-value=0.093 Score=33.39 Aligned_cols=122 Identities=14% Similarity=0.032 Sum_probs=83.1
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCCCCC-CCCCCHH
Q ss_conf 12017738988868999999999999769989998672325010899999998654311012---3443003-6741027
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVPVMA-GIGSNNT 82 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~pii~-gv~~~~~ 82 (292)
|-+-|-++..--++.+.+.+.+.-+...|+|=+===-..........+||......+++.+. |+..+++ .+++ .+
T Consensus 145 PL~gtiiKPklGLs~~~~a~~~ye~~~GG~D~iKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT~-~~ 223 (412)
T TIGR03326 145 PLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLANITA-PV 223 (412)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCC-CH
T ss_conf 60466556767899799999999998257773126645679887658999999999999999875874258864378-99
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 899997534321024432001234334317889999999875302330121
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
++.+++++.++++|+.++|+-.-.+ ..+ ..+..++.++..++||..+
T Consensus 224 ~em~~ra~~a~e~G~~~vMv~~~~~-G~s---al~~lr~~~~d~~l~ihaH 270 (412)
T TIGR03326 224 REMERRAELVADLGGQYVMVDVVVC-GWS---ALQYIRELTEDLGLAIHAH 270 (412)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC-CCH---HHHHHHHHHHHCCCEEEEC
T ss_conf 9999999999983998797436324-635---9999998622349779843
No 51
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=95.82 E-value=0.15 Score=31.96 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999769989998672325010899999998654311012344300367410278999975343210244320
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALL 101 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~ 101 (292)
..+|.+...+ |++-.+.-=...+...-+...+ ...........|++++.++.+.++..+-++.+++.|+|+|=
T Consensus 13 ~~fR~l~~~~---g~~~~~TEmv~a~~~~~~~~~~----~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~g~d~ID 85 (231)
T cd02801 13 LPFRLLCRRY---GADLVYTEMISAKALLRGNRKR----LRLLTRNPEERPLIVQLGGSDPETLAEAAKIVEELGADGID 85 (231)
T ss_pred HHHHHHHHHH---CCCEEEECCEEEHHHHCCCHHH----HHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 9999999998---9398997989987765388878----98724486678079987589899999999988753999999
Q ss_pred E--ECCCC----------CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCC---HHHHHHHHHHCCHHHHHH----
Q ss_conf 0--12343----------3431788999999987530233012100111112111---068999743203023310----
Q gi|254780276|r 102 V--VIPYY----------NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMD---VDTMAELAATYPNIVGVK---- 162 (292)
Q Consensus 102 v--~~P~~----------~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~---~~~l~~L~~~~pni~giK---- 162 (292)
+ .-|.- .-.+.+-+.+..+.+.+++++||-+= -+.|.+-. .+++ +...+.+ +..+-
T Consensus 86 lN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~ipVsvK---iRlg~~~~~~~~~~~-~~l~~~G-~~~ltvH~R 160 (231)
T cd02801 86 LNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVK---IRLGWDDEEETLELA-KALEDAG-ASALTVHGR 160 (231)
T ss_pred EECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEE---EEECCCCHHHHHHHH-HHHHHCC-CCEEEEECC
T ss_conf 83899969970898307876297899999999997569947999---970778634799999-9999769-989998356
Q ss_pred ------CCCCCHHHHHHHHHHCCCCEEECCCCCC---CHHHHHH-HCCCCCCCCCCCC-CCCHHHHHHH
Q ss_conf ------0122113589999735984032013221---0012432-0334455222232-1100244444
Q gi|254780276|r 163 ------DATGKIELVSEQRLSCGFDFIQLSGEDS---SALGFNA-HGGVGCISVTANV-VPRICAEFQQ 220 (292)
Q Consensus 163 ------~~~~~~~~~~~~~~~~~~~~~v~~G~~~---~~~~~~~-~G~~G~is~~~n~-~P~~~~~l~~ 220 (292)
....|++.+.++.+..+-. .+.+|.=. .+...+. .|++|++.|-+.+ -|.+..++-+
T Consensus 161 t~~q~~~~~a~~e~i~~~~~~~~ip-vi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~iF~~i~~ 228 (231)
T cd02801 161 TREQRYSGPADWDYIAEIKEAVSIP-VIANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKE 228 (231)
T ss_pred CHHHCCCCCCCHHHHHHHHHCCCCE-EEEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHH
T ss_conf 1441467762269999998659977-9983890999999999985099999987888769889999999
No 52
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=95.72 E-value=0.044 Score=35.74 Aligned_cols=161 Identities=24% Similarity=0.293 Sum_probs=107.4
Q ss_pred ECCCCCCCCCCCCCC-HHHHH-HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 112017738988868-99999-9999999769989998672325010899999998654311012344300367410278
Q gi|254780276|r 6 IPALITPFTKGNLID-EDAFV-EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTR 83 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD-~~~~~-~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~ 83 (292)
+|..++-+| .|+=. -..+. ++.+=--+.|+ + .|.-+--..|...|-.+-++.+.+.++ ..|+++-+|+..+.
T Consensus 57 ~P~~I~aMT-GG~~~~a~~IN~~LA~aA~e~gi-~---mgvGSqraal~~P~~~~tF~~vR~~aP-~~~l~AN~GA~q~~ 130 (349)
T TIGR02151 57 APFLINAMT-GGSEEKAGKINRKLARAAEELGI-P---MGVGSQRAALKDPEVAETFEVVREEAP-NGPLIANIGAPQLV 130 (349)
T ss_pred CCEEEECCC-CCCHHHHHHHHHHHHHHHHHHCC-C---EEECHHHHHHCCCHHHHHHHHHHHHCC-CCCEEECCCHHHHH
T ss_conf 676761455-77367888998999999998198-1---543002221127124666999997679-83378717878874
Q ss_pred HH-----HHHHHHHH-HCCCCCCCEECCCCCC-------CCH-HHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHH
Q ss_conf 99-----99753432-1024432001234334-------317-8899999998753023301210011111211106899
Q gi|254780276|r 84 ES-----VELAQYAH-SIGADALLVVIPYYNK-------PNR-RGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMA 149 (292)
Q Consensus 84 ~~-----i~~a~~a~-~~Gad~i~v~~P~~~~-------~~~-~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~ 149 (292)
+- .+.++.+- .+.|||+.|+-=.-.- .+- .++.+.-++||+.++.||++=. +|+.||.++.+
T Consensus 131 ~~~~~~g~~~~~~aid~i~AdAL~iHlN~~QE~vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKE----vG~G~S~e~a~ 206 (349)
T TIGR02151 131 EGGKKYGVEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFSKGWLEKIAEICSAVSVPVIVKE----VGFGISKEVAK 206 (349)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHH
T ss_conf 06534488999999987510133554323302557999701565389999999965289879982----15799889999
Q ss_pred HHHHHCCHHHHHHCCCC----CHHHHHHHHHHCC
Q ss_conf 97432030233100122----1135899997359
Q gi|254780276|r 150 ELAATYPNIVGVKDATG----KIELVSEQRLSCG 179 (292)
Q Consensus 150 ~L~~~~pni~giK~~~~----~~~~~~~~~~~~~ 179 (292)
+|. +.+ |.+| |-+| ||.++...++...
T Consensus 207 ~L~-~~G-v~ai-Dv~G~GGTswa~vE~~Rr~~~ 237 (349)
T TIGR02151 207 LLA-DAG-VKAI-DVSGAGGTSWAAVENYRRAKE 237 (349)
T ss_pred HHH-HCC-EEEE-EECCCCCCCHHHHHHHHHHCC
T ss_conf 998-789-0088-707876755999998875157
No 53
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.67 E-value=0.13 Score=32.45 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=30.8
Q ss_pred EECCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----------CC--HHCCCHHHHHHHHHHHHHCCC
Q ss_conf 111201773-89888689999999999997699899986723----------25--010899999998654311012
Q gi|254780276|r 5 SIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----------GE--SSTLSHEEHCRIIELCVKTVA 68 (292)
Q Consensus 5 i~~~~~TPf-~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----------GE--~~~Ls~~Er~~~~~~~~~~~~ 68 (292)
+++|+.+-+ ++||.+....+.-+.++ ...|+ |+.+.|.+ +. ...+..+|...-++.+++.+.
T Consensus 18 v~apm~~~~~~~dG~~t~~~~~yy~~r-A~gG~-glIit~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~k~l~d~vh 92 (338)
T cd04733 18 AKAAMSERLADGRGLPTPELIRLYRRW-AEGGI-GLIITGNVMVDPRHLEEPGIIGNVVLESGEDLEAFREWAAAAK 92 (338)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHH-HCCCC-EEEEECCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 889888874579998999999999988-62783-4889703898677677999888888799999999999999998
No 54
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.19 Score=31.12 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=113.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC----------CCCCHHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 23443003674102789999753432102443200--12343----------34317889999999875302-3301210
Q gi|254780276|r 68 ASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY----------NKPNRRGLLAHFGEIATTVS-SPIYIYN 134 (292)
Q Consensus 68 ~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~----------~~~~~~~i~~~~~~i~~~~~-~pi~iYn 134 (292)
....|+.+++++.+.+...+-++.+++.|+|.|=+ .-|.- .-.+.+-+.+..+++.++++ +|+-+=
T Consensus 64 ~~e~p~~vQl~gsdp~~laeaA~~~~~~g~~~IDlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVK- 142 (323)
T COG0042 64 EEERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVK- 142 (323)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEE-
T ss_conf 6678779997389989999999999866999898768999289808984477717989999999999985388874999-
Q ss_pred CHHHCCCCCC---HHHHHHHHHHCCHHHHHH---------C-CCCCHHHHHHHHHHCCCCEEECCCC--C-CCHHHHHH-
Q ss_conf 0111112111---068999743203023310---------0-1221135899997359840320132--2-10012432-
Q gi|254780276|r 135 NPSRTVIEMD---VDTMAELAATYPNIVGVK---------D-ATGKIELVSEQRLSCGFDFIQLSGE--D-SSALGFNA- 197 (292)
Q Consensus 135 ~P~~~g~~~~---~~~l~~L~~~~pni~giK---------~-~~~~~~~~~~~~~~~~~~~~v~~G~--~-~~~~~~~~- 197 (292)
-+.|.+-. ...+.+++.+- .+..+- . +..|++.+.++++..++-..+.+|. + +.....+.
T Consensus 143 --iRlG~d~~~~~~~~ia~~~~~~-G~~~ltVHgRtr~~~y~~~a~~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~ 219 (323)
T COG0042 143 --IRLGWDDDDILALEIARILEDA-GADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEY 219 (323)
T ss_pred --EECCCCCHHCCHHHHHHHHHHC-CCCEEEEECCCHHHCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
T ss_conf --8578780020099999999967-9878999556676468986487999999986799759857994999999999984
Q ss_pred HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHHCC---CCHHHH-HHHHH-HCCCCCCCCCC
Q ss_conf 0334455222232-110024444431178827--9999999999999998426---893899-99999-86988998767
Q gi|254780276|r 198 HGGVGCISVTANV-VPRICAEFQQAMIRGDYR--QALLYQDKLMPLHQALFME---PAVCCV-KYALS-RLGRNVSLAVR 269 (292)
Q Consensus 198 ~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~--~A~~l~~~l~~l~~~~~~~---~~~~~~-K~~l~-~~G~~~~~~~R 269 (292)
.|++|.+.|=+.+ .|.+..++ +....|... ...+..+.+.+..+.+... .....+ |+... +.|+......|
T Consensus 220 tg~DgVMigRga~~nP~l~~~i-~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~rkh~~~~~~~~~~a~~~r 298 (323)
T COG0042 220 TGADGVMIGRGALGNPWLFRQI-DYLETGELLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKGLPGARELR 298 (323)
T ss_pred HCCCEEEECHHHHCCCHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 1898799743531695575533-553068878877999999999999999986241069999999999986485379999
Q ss_pred C
Q ss_conf 8
Q gi|254780276|r 270 S 270 (292)
Q Consensus 270 ~ 270 (292)
.
T Consensus 299 ~ 299 (323)
T COG0042 299 R 299 (323)
T ss_pred H
T ss_conf 9
No 55
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase; InterPro: IPR012698 Phosphonates are a class of organophosphorus compounds, characterised by a stable C-P bond, which are found in a variety of biologically produced molecules including antiobiotics, lipids, proteins and polysaccharides . The functions of these molecules include phosphorus storage, cell communication, host recognition and chemical warfare. Phosphoenolpyruvate (PEP) phosphomutase catalyses the reversible conversion of PEP to 3-phosphonopyruvate, forming a stable C-P bond, which is the entry point to all known phosphonate biosynthetic pathways . This entry consists of characterised and predicted PEP phosphomutases found in bacterial and eukayotic species. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this entry, and the functional identification of some more distantly related sequences, such as from Bacteroides fragilis, Treponema denticola, and Clostridium tetani E88 is unknown. PEP phosphomutase forms a modified TIM barrel fold where the eighth alpha helix adopts a different conformation than in the classical TIM barrel fold . The substrate binds in the central channel of the barrel and is anchored to the active site by the Mg(2+) cofactor . In the absence of substrate the active site is acessible to the solvent, while substrate-binding causes a conformational change where a large loop shields the site from solvent . This shielding appears to be required for catalysis to occur.; GO: 0050188 phosphoenolpyruvate mutase activity.
Probab=95.63 E-value=0.049 Score=35.45 Aligned_cols=143 Identities=21% Similarity=0.226 Sum_probs=98.6
Q ss_pred CCC-CCCCHHHHHHHHHHHHHCCCCEEEEC--------CCCCCH--HCCCHHHHHHHHHHHHHCCCC-CCCCCC----CC
Q ss_conf 898-88689999999999997699899986--------723250--108999999986543110123-443003----67
Q gi|254780276|r 14 TKG-NLIDEDAFVEHIEWQITEGSGGLVPA--------GTTGES--STLSHEEHCRIIELCVKTVAS-RVPVMA----GI 77 (292)
Q Consensus 14 ~~d-~~iD~~~~~~~i~~l~~~gv~gi~~~--------G~tGE~--~~Ls~~Er~~~~~~~~~~~~~-r~pii~----gv 77 (292)
|.| |==|+..=|+.+.++-+.|+.|++.= -..|.. +.=..+|.+-=++.+.+...+ ..-||+ =+
T Consensus 77 DgDtGyGNFNnARr~arkle~~GaaG~ClEDk~FPK~NSf~gdrahpLAdi~EFcgkikAcKD~~~DpdFv~VAR~EAlI 156 (272)
T TIGR02320 77 DGDTGYGNFNNARRLARKLEDRGAAGVCLEDKVFPKMNSFFGDRAHPLADIEEFCGKIKACKDAQRDPDFVVVARVEALI 156 (272)
T ss_pred ECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCHHEEECCCCCCCEEEEHHHHHHH
T ss_conf 37879871467999999997468632220355576413342788887888154404100200678997536623047764
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCC-CCCCHHHHHHHHHHCC
Q ss_conf 410278999975343210244320012343343178899999998753023301210011111-2111068999743203
Q gi|254780276|r 78 GSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTV-IEMDVDTMAELAATYP 156 (292)
Q Consensus 78 ~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g-~~~~~~~l~~L~~~~p 156 (292)
++...+|++++|+.+.++|||++++.. -+-+.++|..|.+.=-.. .||+|= | |+ +.-|++.+..+-
T Consensus 157 ag~g~dEAL~RA~AYaeAGADAiliHS---rk~~p~qI~aF~~aW~n~--~PVvIv--P--TkYy~tpvd~fra~G---- 223 (272)
T TIGR02320 157 AGLGLDEALKRAEAYAEAGADAILIHS---RKADPEQIAAFMKAWENS--LPVVIV--P--TKYYKTPVDDFRALG---- 223 (272)
T ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHH---CCCCHHHHHHHHHHHCCC--CCEEEE--C--CCCCCCCHHHHHHCC----
T ss_conf 389866899999998851312455631---348887999999964289--877883--4--767899767786377----
Q ss_pred HHHHHHCCCCCHHH
Q ss_conf 02331001221135
Q gi|254780276|r 157 NIVGVKDATGKIEL 170 (292)
Q Consensus 157 ni~giK~~~~~~~~ 170 (292)
|.++=++.+|+..
T Consensus 224 -is~vIWANHnmRA 236 (272)
T TIGR02320 224 -ISTVIWANHNMRA 236 (272)
T ss_pred -CCEEHHHHHHHHH
T ss_conf -4233020033799
No 56
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=95.61 E-value=0.26 Score=30.22 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=46.8
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC--------CC-HHCCCHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 11120177389888689999999999997699899986723--------25-0108999999986543110123-44300
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT--------GE-SSTLSHEEHCRIIELCVKTVAS-RVPVM 74 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t--------GE-~~~Ls~~Er~~~~~~~~~~~~~-r~pii 74 (292)
+++|+.|-+..++..- +.+..+.....+.|+ |+.+.+.+ .. ...+..+|...-++.+++.+.. ...++
T Consensus 17 v~apm~~~~~~~~~~~-~~~~~yy~~rA~gG~-glIi~e~~~v~~~g~~~~~~~~i~~d~~i~~~k~l~~~vH~~G~~i~ 94 (353)
T cd02930 17 LMGSMHTGLEELDDGI-DRLAAFYAERARGGV-GLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAEGGKIA 94 (353)
T ss_pred EECCCCCCCCCCCCCH-HHHHHHHHHHHCCCC-EEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 8557463436799786-999999999976786-34897628988041769997632799999999999999997699799
Q ss_pred CCCCC---------------------------CHH-------HHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 36741---------------------------027-------8999975343210244320012
Q gi|254780276|r 75 AGIGS---------------------------NNT-------RESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 75 ~gv~~---------------------------~~~-------~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++..+ .+. ++-.+-|++|+++|+|+|.+..
T Consensus 95 ~QL~H~Gr~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ 158 (353)
T cd02930 95 LQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAALAREAGYDGVEIMG 158 (353)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9731478666898881898777888999886599999999999999999999982999899625
No 57
>pfam00016 RuBisCO_large Ribulose bisphosphate carboxylase large chain, catalytic domain. The C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.
Probab=95.55 E-value=0.17 Score=31.42 Aligned_cols=140 Identities=9% Similarity=0.075 Sum_probs=90.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCCC-CCCCCCCHH
Q ss_conf 12017738988868999999999999769989998672325010899999998654311012---34430-036741027
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVPV-MAGIGSNNT 82 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~pi-i~gv~~~~~ 82 (292)
|-+-|-++.+--+..+.+.+.+.-+...|+|=+===-...+......+||.+.+..+++.+. |+..+ .+.+++.+.
T Consensus 15 PL~gtiiKP~~Gls~~~~a~~~~e~~~gGvD~iKDDE~l~~~~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiTa~~~ 94 (309)
T pfam00016 15 PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAINRAQAETGEVKGHYLNVTADTM 94 (309)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH
T ss_conf 85775457877899899999999997048743037776789777668999999999999999986982289972158979
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCC-------CCCCHHHHHHHH
Q ss_conf 8999975343210244320012343343178899999998753023301210011111-------211106899974
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTV-------IEMDVDTMAELA 152 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g-------~~~~~~~l~~L~ 152 (292)
++.+++++.+.+.|+.++|+-.-.+--..-..+ .+.++..+++|.. + |...+ ..|+.-.+.||.
T Consensus 95 ~em~~ra~~~~~~G~~~~mv~~~~~G~~al~~l----~~~~r~~~~~lh~-H-ra~~ga~tr~~~~Gi~~~vl~Kl~ 165 (309)
T pfam00016 95 EEMYKRAEYAKELGSPIIMHDLLTGGYTANTSL----ATWARDNGMLLHI-H-RAGHAVYDRQKNHGIHFRVLAKWL 165 (309)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHH----HHHHHHCCCEEEE-C-CCHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 999999999999499711378872662889999----9988762956760-3-440034205876765199999999
No 58
>PRK13127 consensus
Probab=95.55 E-value=0.18 Score=31.27 Aligned_cols=183 Identities=14% Similarity=0.177 Sum_probs=107.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.+.|+|-+=++=-. .++. -.+.+.-.++++.+.+. ..+|++.
T Consensus 15 ~yitaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~--~~~pivl 92 (262)
T PRK13127 15 PYLVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVD--SSVPLVL 92 (262)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCCEEE
T ss_conf 88627089989999999999976999999789888877657999999999997699799999999997456--9988799
Q ss_pred CCCCCH--HHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 674102--7899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNN--TRESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~--~~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.--+. -...-++++.|+++|+||+++. .| .++- +-|.+.++..++.++..=.|. .+.+-+.+++
T Consensus 93 M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP------~eE~-~~~~~~~~~~gi~~I~lvaPt-----t~~~Ri~~i~ 160 (262)
T PRK13127 93 MTYYNPVYRYGVEKFVKKAAEAGVSGLIIPDLP------VEEA-TDLREACKKHGLDLVFLVAPT-----TPEERLKRID 160 (262)
T ss_pred EECCHHHHHCCHHHHHHHHHHCCCCEEEECCCC------HHHH-HHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHH
T ss_conf 966138876089999999987599769966999------7899-999999985583279985899-----9899999998
Q ss_pred HHCCHHHHH---------HCCCC-CH-HHHHHHHHHCCCCEEECCCC-CC-CHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---------00122-11-35899997359840320132-21-001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---------KDATG-KI-ELVSEQRLSCGFDFIQLSGE-DS-SALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---------K~~~~-~~-~~~~~~~~~~~~~~~v~~G~-~~-~~~~~~~~G~~G~is~~~ 208 (292)
+.-..+++. +.... +. +.+.++++..+..+.+--|- .. +.-.....|++|.+.|++
T Consensus 161 ~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~~aDGvIVGSa 229 (262)
T PRK13127 161 EASSGFVYLVSRLGVTGAREDVEEATFDLLKRARTTCKNKIAVGFGISKGEHAEELLDAGADGVIVGSA 229 (262)
T ss_pred HCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECHH
T ss_conf 438981899843555687655528899999999961799848993348899999998649999998789
No 59
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=95.52 E-value=0.27 Score=30.00 Aligned_cols=179 Identities=18% Similarity=0.202 Sum_probs=116.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999999997699899986723250108999999986543110123443003674102789999753432102443
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~ 99 (292)
|.+.-..+++-|++.|++-+=| . |..+.=.+.++...+.... -+++|.|. =-.-++.+.|+++||+.
T Consensus 18 ~~~~A~~lA~aL~egG~~~~Ev-------T-lRT~~A~~aI~~l~~~~P~--~~~iGAGT---VL~~~Q~~~A~~AGA~F 84 (205)
T TIGR01182 18 DVEDALPLAKALIEGGLRVLEV-------T-LRTPVALEAIRALRKEVPK--DALIGAGT---VLNPEQLRQAVAAGAQF 84 (205)
T ss_pred CHHHHHHHHHHHHHCCCEEEEE-------E-ECCCCHHHHHHHHHHHCCC--CCEECCCC---CCCHHHHHHHHHCCCCE
T ss_conf 7877789999998679808988-------5-1472168999999972823--34871676---48989999999708957
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH----CCCCCHHHHHHHH
Q ss_conf 200123433431788999999987530233012100111112111068999743203023310----0122113589999
Q gi|254780276|r 100 LLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK----DATGKIELVSEQR 175 (292)
Q Consensus 100 i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK----~~~~~~~~~~~~~ 175 (292)
+ +.| ..++++.+|. ...++|++ |. + +|+..+.+.. ++. +..+| |.+|-...+..+.
T Consensus 85 ~--vSP----G~~p~l~~~~----~~~~~P~i----PG---V-~tpsEi~~Al-~~G-~~~lKlFPAe~~GG~~~lkAL~ 144 (205)
T TIGR01182 85 I--VSP----GLTPELAKHA----KDKGIPII----PG---V-ATPSEIMLAL-ELG-ITALKLFPAEVVGGVKMLKALA 144 (205)
T ss_pred E--ECC----CCCHHHHHHH----HHCCCCEE----CC---C-CCHHHHHHHH-HCC-CCEEEECCCCCCCHHHHHHHHC
T ss_conf 8--769----7888999998----50888121----77---7-6878999998-757-7465212562353089999731
Q ss_pred HHCCCCEEE-CCC--CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 735984032-013--2210012432033445522223211002444443117882799999999999
Q gi|254780276|r 176 LSCGFDFIQ-LSG--EDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 176 ~~~~~~~~v-~~G--~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~ 239 (292)
--++ ++++ -+| +-..+.+++..+.--|+.| +.+.|+.. +++|||++..++..+...
T Consensus 145 GPf~-~v~F~PTGGi~l~N~~~YLa~p~v~c~GG-SWl~P~~~------~~~g~wd~i~~l~r~a~~ 203 (205)
T TIGR01182 145 GPFP-QVRFCPTGGINLDNARDYLALPNVACVGG-SWLVPKDL------IAAGDWDEITELAREALE 203 (205)
T ss_pred CCCC-CCCCCCCCCCCHHHHHHHHCCCCEEEEEC-CCCCCHHH------HHCCCHHHHHHHHHHHHH
T ss_conf 6578-98451479998878999971893799816-31464788------758996799999999986
No 60
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=95.51 E-value=0.15 Score=31.87 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8868999999999999769989998672325010899999998654-----31101234430036741027899997534
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQY 91 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~ 91 (292)
.+-|.+...+.++.+++.+++|+.+.++..... +...++.+. +.+......+.+..|+..+..-....+++
T Consensus 37 ~~~~~~~~~~~i~~~~~~~vDgiIi~~~~~~~~----~~~~~~~~~~ipvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~ 112 (264)
T cd01537 37 SQNDAEKQLSALENLIARGVDGIIIAPSDLTAP----TIVKLARKAGIPVVLVDRDIPDGDRVPSVGSDNEQAGYLAGEH 112 (264)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCH----HHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 999989999999999976999999967988868----9999999759979998566788888719997779999999999
Q ss_pred HHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 3210244320012-343343178899999998753023301210011111211106899974320302331001221
Q gi|254780276|r 92 AHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGK 167 (292)
Q Consensus 92 a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~ 167 (292)
..+.|..-+.++. +....... .-.+-|++..+..+.....+-.+......-..+.+.++.+..|.+.+| .++.|
T Consensus 113 l~~~g~~~i~~i~~~~~~~~~~-~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dai-~~~~d 187 (264)
T cd01537 113 LAEKGHRRIALLAGPLGSSTAR-ERVAGFKDALKEAGPIEIVLVQEGDWDAEKGYQAAEELLTAHPDPTAI-FAAND 187 (264)
T ss_pred HHHCCCCCEEECCCCCCCCHHH-HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEE-EECCH
T ss_conf 9862986245304887770699-999999999997799985379957999899999999998508997699-98986
No 61
>PRK13140 consensus
Probab=95.51 E-value=0.28 Score=29.98 Aligned_cols=185 Identities=9% Similarity=0.041 Sum_probs=107.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 77389888689999999999997699899986723----2501------------0899999998654311012344300
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVM 74 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii 74 (292)
.||---|--|.+...+.++-+.++|+|-|=++=-. .++. -.+.+.-.++++.+.+. ..+|++
T Consensus 17 i~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~--~~~piv 94 (257)
T PRK13140 17 SIYFTAGYPTLEDTVSIIKDLEKHGVDMIEIGIPFSDPLADGPVIQKSATQALKNGMTLKLLFEQLKDIRKE--VQIPLI 94 (257)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCCEE
T ss_conf 888818289879999999999975999999789889877658999999999998699899999999997436--898889
Q ss_pred CCCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 36741027--8999975343210244320012343343178899999998753023301210011111211106899974
Q gi|254780276|r 75 AGIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 75 ~gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
.=.--+.. ...-++++.|+++|+||+++.= +.-++-.+.|+..|+.-++..+..=.|. .+.+-+.+++
T Consensus 95 lM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipD-----LP~ee~~~~~~~~~~~~~i~~I~lvaPt-----t~~~Ri~~i~ 164 (257)
T PRK13140 95 LMGYLNPIMQYGFEKFCKKCAETGIDGVIIPD-----LPFDDYQEHYKEIFEKYGLKNIMLITPQ-----TSEERIREID 164 (257)
T ss_pred EEECHHHHHHHCHHHHHHHHHHCCCCEEEECC-----CCHHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHH
T ss_conf 99055999851799999999984998698359-----9856758999999998699779986899-----9899999999
Q ss_pred HHCCHHHHH---------HCCCC-CH-HHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---------00122-11-358999973598403201322---1001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---------KDATG-KI-ELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---------K~~~~-~~-~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~ 208 (292)
+.-..+++. +.... +. ..+.++++.. .+.-+..|.+ ..-...+..+++|.+.|++
T Consensus 165 ~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~~-~~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 233 (257)
T PRK13140 165 SHTDGFIYMVSSASTTGAQQDFNNQKRAYFKRIKDMN-LKNPRMVGFGISNKATFNAACEYASGAIIGSA 233 (257)
T ss_pred HHCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCCHHHHHHHHHCCCEEEECHH
T ss_conf 7399966870365666887665156899999999827-89986998057989999999831999998799
No 62
>PRK13127 consensus
Probab=95.45 E-value=0.29 Score=29.85 Aligned_cols=83 Identities=20% Similarity=0.317 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------------------CHHHHHHHHHHHHHHHCCCC--EEEE
Q ss_conf 367410278999975343210244320012343343------------------17889999999875302330--1210
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKP------------------NRRGLLAHFGEIATTVSSPI--YIYN 134 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~------------------~~~~i~~~~~~i~~~~~~pi--~iYn 134 (292)
.-.|.++.+.+.+.++...+.|+|.+-+.-|+--+. +-+.+++..+++....+.|+ |-|-
T Consensus 17 itaG~P~~e~t~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlM~Y~ 96 (262)
T PRK13127 17 LVAGDPDPEATLEFVKALVKGGADVIELGIPFSDPVADGPTIQAADVRALSAGMKIDKYFELVKELRVDSSVPLVLMTYY 96 (262)
T ss_pred ECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 62708998999999999997699999978988887765799999999999769979999999999745699887999661
Q ss_pred CHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 011111211106899974320302331
Q gi|254780276|r 135 NPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 135 ~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
||.. .+..+-+.+-+++. .+-|+
T Consensus 97 N~i~---~~G~e~F~~~~~~~-GvdGl 119 (262)
T PRK13127 97 NPVY---RYGVEKFVKKAAEA-GVSGL 119 (262)
T ss_pred HHHH---HCCHHHHHHHHHHC-CCCEE
T ss_conf 3887---60899999999875-99769
No 63
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=95.39 E-value=0.067 Score=34.44 Aligned_cols=86 Identities=23% Similarity=0.342 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE---ECCCCCC----CCHHHHHHHHHHH
Q ss_conf 08999999986543110123443003674102789999753432102443200---1234334----3178899999998
Q gi|254780276|r 50 TLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV---VIPYYNK----PNRRGLLAHFGEI 122 (292)
Q Consensus 50 ~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v---~~P~~~~----~~~~~i~~~~~~i 122 (292)
....+++.+.++.+.+.. .+|+|+.+.+.+.++-.++++..++.|+|++-+ .||.-.. -.++.+.+..+.|
T Consensus 81 n~g~e~~l~~i~~~~~~~--~~pvI~Si~g~s~ee~~~~a~~~~~~gad~lElNls~~~~~~~~~~~~~~~~~~~iv~~V 158 (325)
T cd04739 81 NLGPEEYLELIRRAKRAV--SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAV 158 (325)
T ss_pred CCCHHHHHHHHHHHHHHC--CCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 758999999999987535--987598716899899999999997649987999656678885544210688999999999
Q ss_pred HHHHCCCCEEEECHH
Q ss_conf 753023301210011
Q gi|254780276|r 123 ATTVSSPIYIYNNPS 137 (292)
Q Consensus 123 ~~~~~~pi~iYn~P~ 137 (292)
.+++++|+++==.|.
T Consensus 159 k~~~~~Pv~vKLsP~ 173 (325)
T cd04739 159 KSAVTIPVAVKLSPF 173 (325)
T ss_pred HHCCCCCEEEECCCC
T ss_conf 860788669953998
No 64
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=95.33 E-value=0.31 Score=29.57 Aligned_cols=142 Identities=9% Similarity=0.035 Sum_probs=91.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCC-CCCCCCCCHH
Q ss_conf 12017738988868999999999999769989998672325010899999998654311012---3443-0036741027
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVP-VMAGIGSNNT 82 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~p-ii~gv~~~~~ 82 (292)
|-+-|-++..--+..+.+.+.+.-+...|+|=+====.......+..+||...+-.+++.+. |+.. -.+.+++.+.
T Consensus 160 PLlgtiiKPklGLsp~~~a~~~ye~~~GGvDfiKDDE~l~~~pf~p~~eRv~~v~~a~~~a~~eTGe~k~y~~NiTa~~~ 239 (467)
T PRK04208 160 PLLGTTPKPKLGLSAKNYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVMEAIDKAEAETGERKGHYLNVTAPTM 239 (467)
T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCH
T ss_conf 50012456767899799999999997048756406644669888978999999999999999976895189986227989
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH--HHC---CCCCCHHHHHHHH
Q ss_conf 899997534321024432001234334317889999999875302330121001--111---1211106899974
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP--SRT---VIEMDVDTMAELA 152 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P--~~~---g~~~~~~~l~~L~ 152 (292)
++.+++++.+.+.|+.++|+-.-.+ .. ...+..++.++..++||..+-.= ..+ ...++.-.+.||.
T Consensus 240 ~em~~Rae~~~e~G~~~vMvd~~~~-G~---~al~~lr~~~r~~~l~IHaHRA~~ga~tr~p~~Gis~~vl~Kl~ 310 (467)
T PRK04208 240 EEMYKRAEFAKELGSPIIMIDVVTA-GW---TALQSLREWCRDNGLALHAHRAMHAAFTRNPNHGISFRVLAKLL 310 (467)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEC-CH---HHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHH
T ss_conf 9999999999975996798974303-30---79999999776539658850153212116876664399999999
No 65
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=95.32 E-value=0.3 Score=29.66 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=29.0
Q ss_pred EECCCCCC-CCCCCCCCHHHHHHHHHHHHH-CCCCEEEECCCC-----CC----HHCCCHHHHHHHHHHHHHCC
Q ss_conf 11120177-389888689999999999997-699899986723-----25----01089999999865431101
Q gi|254780276|r 5 SIPALITP-FTKGNLIDEDAFVEHIEWQIT-EGSGGLVPAGTT-----GE----SSTLSHEEHCRIIELCVKTV 67 (292)
Q Consensus 5 i~~~~~TP-f~~d~~iD~~~~~~~i~~l~~-~gv~gi~~~G~t-----GE----~~~Ls~~Er~~~~~~~~~~~ 67 (292)
+++|+.+- -++||.+....+ +|+.. +|+ |+.+.+.+ |. ...+..++...-++..++.+
T Consensus 18 v~apm~~~~~~~~G~pt~~~~----~yy~~rAg~-GlIi~e~~~V~~~g~~~~~~~~l~~d~~i~~~~~l~~~v 86 (338)
T cd02933 18 VMAPLTRSRADPDGVPTDLMA----EYYAQRASA-GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAV 86 (338)
T ss_pred EECCCCCCCCCCCCCCCHHHH----HHHHHHCCC-CEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 863457874599999999999----999985885-579972369754204699987322399999999999999
No 66
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.22 E-value=0.34 Score=29.33 Aligned_cols=186 Identities=13% Similarity=0.088 Sum_probs=106.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344-30036741027899997534321024
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRV-PVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~-pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-|.+......+-+++.|++-+=+. |+.+.-.++++...+..+.+. -+++|+|.--+. +.++.|.++||
T Consensus 25 ~~~e~a~~~a~aL~~gGi~~iEiT--------lrt~~a~~~i~~l~~~~~~~~p~~~iGaGTVl~~---~~~~~a~~aGA 93 (223)
T PRK07114 25 SDIEVAKKVVKACYDGGVRAFEFT--------NRGDFAHEVFGELVKYAAKECPEMILGVGSIVDA---ATAALYIQLGA 93 (223)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCH---HHHHHHHHCCC
T ss_conf 899999999999998899889995--------8896589999999999986689808965518899---99999998599
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC---CCCCHHHHHHH
Q ss_conf 432001234334317889999999875302330121001111121110689997432030233100---12211358999
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD---ATGKIELVSEQ 174 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~---~~~~~~~~~~~ 174 (292)
+.+ ..|. .++++.++.++ .++|.+ | |+ +++..+.... +. ....+|. +.+-...+..+
T Consensus 94 ~Fi--VSP~----~~~~v~~~~~~----~~~~~i----P---Gv-~TptEi~~A~-~~-G~~~vK~FPa~~~G~~~lkal 153 (223)
T PRK07114 94 NFV--VGPL----FNEDIAKVCNR----RKIPYS----P---GC-GSVSEIGFAE-EL-GCEIVKIFPGDVYGPEFVKAI 153 (223)
T ss_pred CEE--ECCC----CCHHHHHHHHH----CCCCCC----C---CC-CCHHHHHHHH-HC-CCCEEEECCCCCCCHHHHHHH
T ss_conf 899--9999----99999999998----399753----7---31-9999999999-87-999798897323599999998
Q ss_pred HHHCCCC-EEECCCCC---CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9735984-03201322---10012432033445522223211002444443117882799999999999999
Q gi|254780276|r 175 RLSCGFD-FIQLSGED---SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ 242 (292)
Q Consensus 175 ~~~~~~~-~~v~~G~~---~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~ 242 (292)
..-++.- |.--.|.+ +.+-+++..|+..+ .+-++++|+.. +.++||++-++.-.+...+.+
T Consensus 154 ~~p~p~~~~~PtGGV~ps~~N~~~~l~ag~~~v-G~GS~l~~~~~------i~~~d~~~I~~~a~~~~~~vk 218 (223)
T PRK07114 154 KGPMPWTSIMPTGGVEPTEENLKSWFKAGATCV-GMGSKLFPKDK------LAAKDWAGITKKVKEALDIIK 218 (223)
T ss_pred HCCCCCCCEEECCCCCCCHHHHHHHHHCCCEEE-EECHHHCCHHH------HHCCCHHHHHHHHHHHHHHHH
T ss_conf 464999968879998873550999996899799-98846389999------865899999999999999999
No 67
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=95.16 E-value=0.35 Score=29.22 Aligned_cols=179 Identities=16% Similarity=0.128 Sum_probs=106.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+.....++-+++.|++-+=+.= +.++-.+.++...+..++ +++|+|.--+. +.++.|.++|++
T Consensus 22 ~~~~~a~~~~~al~~gGi~~iEiTl--------~t~~a~~~I~~l~~~~p~---~~iGaGTV~~~---e~~~~a~~aGA~ 87 (210)
T PRK07455 22 PDLELGLQMAEAVAAGGMRLIEITW--------NSDQPAELISQLREKLPE---CIIGTGTLLTL---EDLEEAIAAGAQ 87 (210)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEC--------CCCCHHHHHHHHHHHCCC---CEEEEEECCCH---HHHHHHHHCCCC
T ss_conf 9999999999999987998899968--------998899999999987899---68988818789---999999986999
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ +.|. .+.++.++.++ .++|.+ | |+ +++..+.+.. +.. ...+|- ..+-...+..+
T Consensus 88 Fi--VSP~----~~~~vi~~a~~----~~i~~i----P---Gv-~TpsEi~~A~-~~G-~~~vKlFPA~~~GG~~ylkal 147 (210)
T PRK07455 88 FC--FTPH----VDLELIQAAVA----ADIPII----P---GA-LTPTEIVTAW-QAG-ASCVKVFPVQAVGGADYIKSL 147 (210)
T ss_pred EE--ECCC----CCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HCC-CCEEEECCCHHCCCHHHHHHH
T ss_conf 99--8688----88999999998----299765----8---86-9999999999-869-984775051320679999998
Q ss_pred HHHCCCC-EEECCCC-CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 9735984-0320132-21001243203344552222321100244444311788279999999999
Q gi|254780276|r 175 RLSCGFD-FIQLSGE-DSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLM 238 (292)
Q Consensus 175 ~~~~~~~-~~v~~G~-~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~ 238 (292)
+.-+++- |.--.|. ...+-+++..|+.++.. -++++|+.. +.+|||++..+.-.++.
T Consensus 148 ~~p~p~i~~~ptGGV~~~n~~~yl~ag~~~vg~-Gs~l~~~~~------i~~~d~~~I~~~A~~~v 206 (210)
T PRK07455 148 QGPLGHIPLIPTGGVTLENAQAFIQAGAIAVGL-SSQLFPKTL------LAAQNWPAITQRAELLL 206 (210)
T ss_pred HCCCCCCCEEECCCCCHHHHHHHHHCCCEEEEE-CHHHCCHHH------HHCCCHHHHHHHHHHHH
T ss_conf 654899938878998988899999689979998-846189888------86189999999999999
No 68
>pfam10566 Glyco_hydro_97 Glycoside hydrolase 97. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands.
Probab=94.97 E-value=0.15 Score=31.86 Aligned_cols=111 Identities=12% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC-CCC----CCHHCCC---HH-HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 888689999999999997699899986-723----2501089---99-99998654311012344300367410278999
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPA-GTT----GESSTLS---HE-EHCRIIELCVKTVASRVPVMAGIGSNNTRESV 86 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~-G~t----GE~~~Ls---~~-Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i 86 (292)
++.++.+..+++|||..+.|.+++++= |=. ++...++ .+ .-.++++.+.+ ..|.|+..+.....+..+
T Consensus 304 ~~g~n~~~~k~yIDfAA~~G~eyvLvD~gW~~~~~~~~~d~~~~~p~~dl~~lv~Ya~~---KgV~i~lw~~~~~~~~~~ 380 (643)
T pfam10566 304 EGGINFPTYKYYIDFAARNGLEYISLDEGWYTPDGGKNSDMTKVISELDLQELIAYGKS---KGVGIILWTNQKALYAQL 380 (643)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH---CCCEEEEEECCHHHHHHH
T ss_conf 56767688899999999849968998154157888765664542764587999999986---796399983566789989
Q ss_pred -HHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEE
Q ss_conf -9753432102443200123433431788999999987530-233012
Q gi|254780276|r 87 -ELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYI 132 (292)
Q Consensus 87 -~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~i 132 (292)
+..++.++.|+.||-+- |+..++++.++||.+|++.+ .--+++
T Consensus 381 ~~~f~~~~~~Gv~GvKvd---F~~~d~Q~~v~~y~~i~~~AA~~~L~V 425 (643)
T pfam10566 381 DEAFKLYEKWGVVGFKVD---FLDRDDQEMVRWVYEALEKAAKYKLLV 425 (643)
T ss_pred HHHHHHHHHCCCCEEEEC---CCCCCCHHHHHHHHHHHHHHHHCCCEE
T ss_conf 999999998299727756---737652899999999999998779469
No 69
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.94 E-value=0.27 Score=30.02 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=104.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|++-+=++=-. .++. -.|.+.-.++++.+.+. .++|++.
T Consensus 13 ~y~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~--~~~pivl 90 (256)
T PRK13111 13 PYITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAK--PTIPIVL 90 (256)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCCEEE
T ss_conf 88707089989999999999965999999788878876657999999999997799699999999998606--8998899
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 67410278--9999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNTR--ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~~--~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+... ..-++.+.|+++|+||+++.= +..++- +-|.+.|+.-++..+.-=.|. -+.+-+.++++
T Consensus 91 M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipD-----LP~eE~-~~~~~~~~~~gi~~I~lvaPt-----t~~~Ri~~i~~ 159 (256)
T PRK13111 91 MTYYNPIFQYGVEAFAADAAEAGVDGLIIPD-----LPPEEA-EEFRAAAKKHGIDLIFLVAPT-----TTDERLKKIAS 159 (256)
T ss_pred EEECCHHHHHCHHHHHHHHHHCCCCEEEECC-----CCHHHH-HHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHHH
T ss_conf 8503089870999999999975997798169-----997888-999999997598089996999-----98899999996
Q ss_pred HCCHHHHH---------HCC-CCCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 20302331---------001-2211-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIVGV---------KDA-TGKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~gi---------K~~-~~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
.-+.+++. +.. ..+. +.+.++++..+-.+.+--| ....-...+..+++|.+.|++
T Consensus 160 ~s~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pi~vGFGIs~~e~v~~~~~~aDGvIVGSa 226 (256)
T PRK13111 160 HASGFVYYVSRAGVTGARSADAADVADLLARLKAHTDLPVAVGFGISTPEQAAAIAEGADGVIVGSA 226 (256)
T ss_pred HCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 2698599985677678876662889999999987068975885288999999999745999998689
No 70
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=94.92 E-value=0.35 Score=29.21 Aligned_cols=181 Identities=15% Similarity=0.163 Sum_probs=104.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|++-+=++=-. .++. -.+.++-.++++.+.+.. .+|++.
T Consensus 4 ~y~taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~--~~pivl 81 (242)
T cd04724 4 PYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPIVL 81 (242)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 787377899799999999999769999997899888776589999999999976994999999999987347--988899
Q ss_pred CCCCCHHHH--HHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 674102789--9997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNNTRE--SVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~~~~--~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.-.+.... .-++++.++++|+||+++. .| .++ .+-|.+.+...++..+..=.|. -+.+-+++++
T Consensus 82 M~Y~N~i~~~G~e~F~~~~~~~Gv~GviipDLP------~ee-~~~~~~~~~~~~i~~I~lvsPt-----t~~~ri~~i~ 149 (242)
T cd04724 82 MGYYNPILQYGLERFLRDAKEAGVDGLIIPDLP------PEE-AEEFREAAKEYGLDLIFLVAPT-----TPDERIKKIA 149 (242)
T ss_pred EEECHHHHHHCHHHHHHHHHHCCCCEEEECCCC------HHH-HHHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHH
T ss_conf 984457665289999999997599758706999------578-4689999986598388996898-----8789999999
Q ss_pred HHCCHHHHH---HCCCC-------C-HHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---00122-------1-1358999973598403201322---1001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---KDATG-------K-IELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---K~~~~-------~-~~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~ 208 (292)
+.-..+++. +=.+| + .+.+.++++.....+ ..|.+ ..-...+...++|.+.|++
T Consensus 150 ~~s~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv--~vGFGI~~~e~v~~~~~~aDGvIVGSa 217 (242)
T cd04724 150 ELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKYTDLPI--AVGFGISTPEQAAEVAKYADGVIVGSA 217 (242)
T ss_pred HHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 74798499985777778775564999999999987168974--874387999999999965999998789
No 71
>pfam00682 HMGL-like HMGL-like. This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase.
Probab=94.91 E-value=0.38 Score=28.96 Aligned_cols=180 Identities=8% Similarity=0.032 Sum_probs=100.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 88689999999999997699899986723250108999999986543110123443003674102789999753432102
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~G 96 (292)
-.+..+.-.++++.|.+.|++-|=++. ...+..+..++-+ +.+...+ .+ +.+.......+...-.+.+.+.|
T Consensus 9 ~~~~~e~K~~i~~~L~~~Gv~~IEvg~-----~~~~~~~~~~~~~-~~~~~~~-~~-~~~~~~~~~~~~~~~~e~~~~~g 80 (237)
T pfam00682 9 AAFSVEEKLAIARALDEAGVDEIEVGF-----PFMSPTDFESVRA-IAEVLKK-AK-IQALLRPVEHDIDAAVEAAKGAG 80 (237)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEC-----CCCCCCHHHHHHH-HHHHCCC-CC-CCCEEECCCHHHHHHHHHHHHCC
T ss_conf 998999999999999984989899957-----7589735999997-7650258-75-10100034104999999999679
Q ss_pred CCCCCEECCCC-------CCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCCCCCHHHHHHHHHHC----CHHHHHH
Q ss_conf 44320012343-------3431788999999987530---23301210011111211106899974320----3023310
Q gi|254780276|r 97 ADALLVVIPYY-------NKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVIEMDVDTMAELAATY----PNIVGVK 162 (292)
Q Consensus 97 ad~i~v~~P~~-------~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~~~~~~~l~~L~~~~----pni~giK 162 (292)
++.+.+..|.- .+.+.++..+.++++.+.+ ++.+. +.+|..+. .+++.+.++++.. ...+.++
T Consensus 81 ~~~i~i~~~~se~~~~~n~~~s~~~~l~~~~~~i~~a~~~g~~v~-f~~~~~~~--~~~~~~~~~~~~~~~~G~~~i~l~ 157 (237)
T pfam00682 81 ADRVHVFIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVE-LGCEDAGR--TDLAFLIEVVEVAQEAGATRINIA 157 (237)
T ss_pred CCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEE-EEECCCCC--CCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 999999610578789988578999999999999999998699058-84051232--478899999999986198579736
Q ss_pred CCCCC--HHHHHH----HHHHCC-CCEEECCCCCC------CHHHHHHHCCCC---CCCCCC
Q ss_conf 01221--135899----997359-84032013221------001243203344---552222
Q gi|254780276|r 163 DATGK--IELVSE----QRLSCG-FDFIQLSGEDS------SALGFNAHGGVG---CISVTA 208 (292)
Q Consensus 163 ~~~~~--~~~~~~----~~~~~~-~~~~v~~G~~~------~~~~~~~~G~~G---~is~~~ 208 (292)
|+.|- +.++.+ +++..+ ..+. +-+++. ..+.++..|++. .+.|+|
T Consensus 158 DT~G~~~P~~v~~lv~~l~~~~~~~~i~-~H~Hn~~Gla~aN~l~A~~aG~~~id~si~GlG 218 (237)
T pfam00682 158 DTVGVLTPNEAADLISALKDRVPPVIIE-VHCHNDLGMAVANSLAAVEAGADRVDGTVNGLG 218 (237)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEE-EEECCCCCHHHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 8645579899999999999708987158-874488672999999999968999987750315
No 72
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.89 E-value=0.41 Score=28.70 Aligned_cols=183 Identities=11% Similarity=0.099 Sum_probs=103.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC----CCCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 738988868999999999999769989998672----32501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGT----TGESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~----tGE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.++|+|-|=++=- ..++. .++.+.-.++++.+.+. -++|++.
T Consensus 19 ~y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~--~~~Pivl 96 (263)
T CHL00200 19 PFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE--IKAPIVI 96 (263)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC--CCCCEEE
T ss_conf 88707389878999999999976999999789888866658999999999997798777899999998606--7998899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 6741027--899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.--+.. ...-++.+.++++|+||+++. .| .++ .+-|...++.-++..+..=.|. -+.+-+.+++
T Consensus 97 MtY~N~i~~yG~e~F~~~~~~~GvdGlIipDLP------~eE-~~~~~~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~ 164 (263)
T CHL00200 97 FTYYNPVLHYGINKFIKKISQAGVKGLIIPDLP------YEE-SDYLISVCNLYNIELILLIAPT-----SSKSRIQKIA 164 (263)
T ss_pred EEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCC------HHH-HHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHH
T ss_conf 862068887388999999998499868747999------788-8999999985586216664789-----9699999999
Q ss_pred HHCCHHHHH---------HCCCC-CHH-HHHHHHHHCCCCEEECCC-CCC-CHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---------00122-113-589999735984032013-221-001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---------KDATG-KIE-LVSEQRLSCGFDFIQLSG-EDS-SALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---------K~~~~-~~~-~~~~~~~~~~~~~~v~~G-~~~-~~~~~~~~G~~G~is~~~ 208 (292)
+.-..+++. +.... +.. .+.++++.....+.+--| ... +.-.....|++|++.|++
T Consensus 165 ~~a~GFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSa 233 (263)
T CHL00200 165 RAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSA 233 (263)
T ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 728980898533655687544518799999999973699848735879999999997459999998789
No 73
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=94.89 E-value=0.41 Score=28.69 Aligned_cols=98 Identities=11% Similarity=0.060 Sum_probs=50.0
Q ss_pred EECCCCCCC--CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC---------CHHCCCHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 111201773--898886899999999999976998999867232---------50108999999986543110123-443
Q gi|254780276|r 5 SIPALITPF--TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTG---------ESSTLSHEEHCRIIELCVKTVAS-RVP 72 (292)
Q Consensus 5 i~~~~~TPf--~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG---------E~~~Ls~~Er~~~~~~~~~~~~~-r~p 72 (292)
+++|+.+.. +.||.+....+.-+.++ ...|+ |+.+.+.++ ....+..++...-++.+++.+.. ...
T Consensus 19 v~aPm~~~~~~~~dG~~t~~~~~yy~~r-A~GG~-GlIi~e~~~V~~~g~~~~~~~~i~~d~~i~~~~~l~~avh~~G~~ 96 (337)
T PRK13523 19 VMSPMCMYSSENKDGKVTNFHLIHYGTR-AAGQV-GLIIVEATAVTPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAK 96 (337)
T ss_pred EECCCCCCCCCCCCCCCCHHHHHHHHHH-HCCCC-EEEEECCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCE
T ss_conf 7066688656688999999999999999-76897-299983588662214799875566277899999999999755886
Q ss_pred CCCCCCC----------------------------CH-------HHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 0036741----------------------------02-------78999975343210244320012
Q gi|254780276|r 73 VMAGIGS----------------------------NN-------TRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 73 ii~gv~~----------------------------~~-------~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++++..+ .+ .++-.+-|+.|+++|+|+|.+..
T Consensus 97 i~~QL~H~Gr~~~~~~~~~aPS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDgVEIH~ 163 (337)
T PRK13523 97 AAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAAKRAKEAGFDVIEIHG 163 (337)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 8875001775567899810777886788999886499999999999999999999984999899813
No 74
>PRK13132 consensus
Probab=94.84 E-value=0.41 Score=28.74 Aligned_cols=180 Identities=9% Similarity=0.041 Sum_probs=98.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHC------------CCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----25010------------8999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESST------------LSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~------------Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|+|-+=++=-. .++.. ++.+.-.++++.. +.+.|++.
T Consensus 15 ~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~aDGPvIq~A~~~AL~~G~~~~~~~~~~~~i----r~~~pivl 90 (246)
T PRK13132 15 GYIVAGYPNLETTKEFLQRLDESPLDILELGIPYSDPLADGKLIADASFIALQQGVNTDTVFELLARV----KTKKALVF 90 (246)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHH----CCCCCEEE
T ss_conf 78828589989999999999974999899789888876558999999999987799899999999975----36999799
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 6741027--899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.--+.. ...-++++.|+++|+||+++. .| .++. +-|...+..-++..+..=.| | +++-+.+++
T Consensus 91 M~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP------~ee~-~~~~~~~~~~~i~~I~lvaP--T----s~~R~~~i~ 157 (246)
T PRK13132 91 LVYYNLIFAYGLEKFVKKAKELGISGLIVPDLP------FEES-EELIKECEKYNIALIPLISV--T----SPKRAKKIL 157 (246)
T ss_pred EEECHHHHHCCHHHHHHHHHHCCCCEEECCCCC------HHHH-HHHHHHHHHCCCCEEEEECC--C----CHHHHHHHH
T ss_conf 960108877299999999987699857757999------7898-99999999859970144257--9----789999999
Q ss_pred HHCCHHHHH---HCCCC-------CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---00122-------11-3589999735984032013-221001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---KDATG-------KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---K~~~~-------~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
+....+++. +=.+| .. +.+.++++.....+.+--| ....-...+..+++|.+.|++
T Consensus 158 ~~s~gfiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~aDGvIVGSa 225 (246)
T PRK13132 158 KHAKGFIYALGSIGVTGTKSVEEARLKDKVKEIKSFTDLPVAVGFGIKNNQDVKRMRKYADGVIVGTS 225 (246)
T ss_pred HCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECHH
T ss_conf 54898279975356777766636889999999996289986997798999999999822999997099
No 75
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=94.80 E-value=0.16 Score=31.78 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=20.6
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 3003674-1027899997534321024432001
Q gi|254780276|r 72 PVMAGIG-SNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 72 pii~gv~-~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
|..++.- ..+-+.+.++.++|+++|+.++++.
T Consensus 126 ~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlT 158 (351)
T cd04737 126 PKWFQLYMSKDDGFNRSLLDRAKAAGAKAIILT 158 (351)
T ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 708997135887999999999998699989996
No 76
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.71 E-value=0.46 Score=28.38 Aligned_cols=172 Identities=18% Similarity=0.166 Sum_probs=101.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+.....++-+++.|++-+=+. |+..+..+.++...+..++ +++|+|+--+. +.++.|.++|++
T Consensus 13 ~~~~~a~~~~~al~~~Gi~~iEit--------l~t~~a~~~i~~l~~~~~~---~~iGaGTV~~~---~~~~~a~~aGa~ 78 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEIT--------LRTPGALEAIRALRKEFPE---ALIGAGTVLTP---EQADAAIAAGAQ 78 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCHHHHHHHHHHHHCCC---CEEEECCCCCH---HHHHHHHHCCCC
T ss_conf 999999999999998699889996--------7880299999999986898---08965234779---999999985998
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC---CCCHHHHHHHH
Q ss_conf 320012343343178899999998753023301210011111211106899974320302331001---22113589999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA---TGKIELVSEQR 175 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~---~~~~~~~~~~~ 175 (292)
.+ +.|. .+.++.++.++ .++|.+ | |+ +++..+.+.. +. ....+|-- +.-...+..++
T Consensus 79 Fi--vsP~----~~~~v~~~a~~----~~~~~i----P---Gv-~TpsEi~~A~-~~-G~~~vK~FPa~~~G~~~lkal~ 138 (190)
T cd00452 79 FI--VSPG----LDPEVVKAANR----AGIPLL----P---GV-ATPTEIMQAL-EL-GADIVKLFPAEAVGPAYIKALK 138 (190)
T ss_pred EE--ECCC----CCHHHHHHHHH----CCCCEE----C---CC-CCHHHHHHHH-HC-CCCEEEECCCCCCCHHHHHHHH
T ss_conf 99--7377----99999999998----299665----7---87-9999999999-87-9998998955114999999985
Q ss_pred HHCCCC-EEECCCCC-CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 735984-03201322-1001243203344552222321100244444311788279999
Q gi|254780276|r 176 LSCGFD-FIQLSGED-SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALL 232 (292)
Q Consensus 176 ~~~~~~-~~v~~G~~-~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~ 232 (292)
.-+++- |.--.|.+ ..+.+++..|+. +++ .+...| -++..++||++..+
T Consensus 139 ~pfp~~~~~ptGGI~~~N~~~yl~~gv~-avG-~g~~l~------~~~i~~~~w~~It~ 189 (190)
T cd00452 139 GPFPQVRFMPTGGVSLDNAAEWLAAGVV-AVG-GGSLLP------KDAVAAGDWAAITA 189 (190)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHCCCE-EEE-ECHHCC------HHHHHHCCHHHHHC
T ss_conf 5489993899679998889999968998-999-541258------88886089888742
No 77
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=94.66 E-value=0.47 Score=28.30 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCH-----HCCCHHHHHHHHHHHHHCCC------------CCCCCCCCCCCC---
Q ss_conf 9999999999997699899986723250-----10899999998654311012------------344300367410---
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGES-----STLSHEEHCRIIELCVKTVA------------SRVPVMAGIGSN--- 80 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~-----~~Ls~~Er~~~~~~~~~~~~------------~r~pii~gv~~~--- 80 (292)
.+.+++.=+-++++|.+-|..+-...-. +.++.++-.++.+.+++.+. ++-.+|+|.-++
T Consensus 45 Pd~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~~~~~~l~~~av~lA~~A~~~~~~~~~~~~~~~VaGslgP~g~ 124 (308)
T PRK09485 45 PELIYQVHLDYFRAGADIAITASYQATFQGFAARGLSEAEAEALIRRSVELAKEARDDVWAEKPQRPYLLVAGSVGPYGA 124 (308)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCC
T ss_conf 29999999999980878787245503789898749999999999999999999999997541368887069841575444
Q ss_pred --------------HHHHHHH----HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf --------------2789999----753432102443200123433431788999999987530233012
Q gi|254780276|r 81 --------------NTRESVE----LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 81 --------------~~~~~i~----~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
+.++..+ +++...+.|+|.+++-. -++-+|+..-...+.+..++|+++
T Consensus 125 ~l~~g~ey~g~~~~~~~~~~~~~~~qi~~l~~~gvD~il~ET----~~~~~E~~~~~~~~~~~~~~pv~~ 190 (308)
T PRK09485 125 YLADGSEYRGDYGLSVEELQDFHRPRIEALLDAGADLLALET----IPNLDEAEALVELLKEFPQVPAWL 190 (308)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEE----CCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 237886667878999999999999999999727898899960----399999999999998557996899
No 78
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=94.62 E-value=0.18 Score=31.25 Aligned_cols=87 Identities=18% Similarity=0.086 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCE--ECCCC---------CCCCHHHHHHHH
Q ss_conf 9999999865431101234430036741-02789999753432102443200--12343---------343178899999
Q gi|254780276|r 52 SHEEHCRIIELCVKTVASRVPVMAGIGS-NNTRESVELAQYAHSIGADALLV--VIPYY---------NKPNRRGLLAHF 119 (292)
Q Consensus 52 s~~Er~~~~~~~~~~~~~r~pii~gv~~-~~~~~~i~~a~~a~~~Gad~i~v--~~P~~---------~~~~~~~i~~~~ 119 (292)
+.+++.+-++.+.+...+ .|+|+.+.. .+-++-.++++..++.|+|++-+ .-|.- +.-+.+-+.+..
T Consensus 82 ~le~~L~~i~~~k~~~P~-~~vIaSI~g~~~~e~w~~la~~~e~~GaDalELNiSCPn~~~~~~~G~~~gq~pe~v~~i~ 160 (413)
T PRK08318 82 PLEVNLREIRRVKRDYPD-RALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMVT 160 (413)
T ss_pred CHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHCCCHHHHHHHH
T ss_conf 899999999998860789-7089999458788999999998665188779995556776666655511057999999999
Q ss_pred HHHHHHHCCCCEEEECHHHC
Q ss_conf 99875302330121001111
Q gi|254780276|r 120 GEIATTVSSPIYIYNNPSRT 139 (292)
Q Consensus 120 ~~i~~~~~~pi~iYn~P~~~ 139 (292)
+.+.+++++|+++==.|..+
T Consensus 161 ~~Vk~~~~iPV~vKLsPnvt 180 (413)
T PRK08318 161 RWVKRGSRLPVIAKLTPNIT 180 (413)
T ss_pred HHHHHHCCCCEEEEECCCCC
T ss_conf 99885068856998289975
No 79
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=94.55 E-value=0.22 Score=30.74 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCCCCCCEE
Q ss_conf 99997534321024432001
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~ 103 (292)
-..+=.+.++++|++||.+.
T Consensus 74 iM~~DI~~~~~lG~~GVV~G 93 (241)
T COG3142 74 IMLEDIRLARELGVQGVVLG 93 (241)
T ss_pred HHHHHHHHHHHCCCCCEEEE
T ss_conf 99999999998399837985
No 80
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.49 E-value=0.23 Score=30.54 Aligned_cols=15 Identities=20% Similarity=-0.057 Sum_probs=6.0
Q ss_pred HHHHHHHCCCCEEEE
Q ss_conf 999999769989998
Q gi|254780276|r 27 HIEWQITEGSGGLVP 41 (292)
Q Consensus 27 ~i~~l~~~gv~gi~~ 41 (292)
.++.+.+-|...+-+
T Consensus 70 ~~~~l~~lGFGfvEv 84 (336)
T PRK05286 70 AIDALGALGFGFVEV 84 (336)
T ss_pred CCCCHHHCCCCEEEE
T ss_conf 037266568666997
No 81
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.38 E-value=0.38 Score=28.93 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC--CCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 868999999999999769989998672--325010899999998654311012344300367410278999975343210
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGT--TGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSI 95 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~--tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~ 95 (292)
.+..+.-.++++.|.+.|++-|=++-. -.....+..++ ++++...+. ++ + ...+-..+.+. .+.|.++
T Consensus 22 ~~s~e~K~~ia~~L~~~Gv~~IEvgsfvspk~vP~~~d~~--ev~~~i~~~-~~-~--~~~~l~~n~~g----~~~A~~~ 91 (287)
T PRK05692 22 FIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAA--EVMAGIQRR-PG-V--TYAALTPNLKG----LEAALAA 91 (287)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHH--HHHHHHHCC-CC-C--EEEEECCCHHH----HHHHHHC
T ss_conf 8499999999999998499999966877823021316799--999876406-79-6--78664364042----7999977
Q ss_pred CCCCCCEECCC---C----CCCCHHHHHHHHHHHHHHH---CCCCEEE-----ECHHHCCCCCCHHHHHHHHHHC----C
Q ss_conf 24432001234---3----3431788999999987530---2330121-----0011111211106899974320----3
Q gi|254780276|r 96 GADALLVVIPY---Y----NKPNRRGLLAHFGEIATTV---SSPIYIY-----NNPSRTVIEMDVDTMAELAATY----P 156 (292)
Q Consensus 96 Gad~i~v~~P~---~----~~~~~~~i~~~~~~i~~~~---~~pi~iY-----n~P~~~g~~~~~~~l~~L~~~~----p 156 (292)
|++.+-+.-+. + .+.|.++..+-++++.+.+ ++.+..| .+|.- | ..+++.+.++++.. .
T Consensus 92 g~~~i~i~~~~Sd~h~~~nl~~t~~e~l~~~~~~i~~a~~~g~~v~~~i~~afg~p~~-~-~~~~~~l~~~~~~~~~~Ga 169 (287)
T PRK05692 92 GADEVAVFASASEAFSQKNINCSIAESLARFEPVAEAAKQAGVRVRGYVSCVLGCPYE-G-EVPPEAVADVAERLFALGC 169 (287)
T ss_pred CCCEEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCC-C-CCCHHHHHHHHHHHHHCCC
T ss_conf 9898999974179999987479999999999999999997698799987401367646-8-6489999999999985799
Q ss_pred HHHHHHCCCC--CHHHHHH----HHHHCCCC-EEECCCCCC------CHHHHHHHCC---CCCCCCCCC
Q ss_conf 0233100122--1135899----99735984-032013221------0012432033---445522223
Q gi|254780276|r 157 NIVGVKDATG--KIELVSE----QRLSCGFD-FIQLSGEDS------SALGFNAHGG---VGCISVTAN 209 (292)
Q Consensus 157 ni~giK~~~~--~~~~~~~----~~~~~~~~-~~v~~G~~~------~~~~~~~~G~---~G~is~~~n 209 (292)
+-+.+.|+.| ++.++.+ +++..+.. +.+ -+++. ..+.++..|+ ++.+.|+|.
T Consensus 170 ~~I~laDT~G~a~P~~v~~~i~~v~~~~~~~~i~~-H~Hnd~Gma~AN~laAv~aGa~~vd~tv~GlGg 237 (287)
T PRK05692 170 DEISLGDTIGVGTPGQVRRVLEAVLAEFPAERLAG-HFHDTYGQALANIYASLEEGITVFDASVGGLGG 237 (287)
T ss_pred CEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE-EECCCCCHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 78544765566699999999999998668872356-744873069999999998099989885547779
No 82
>PRK09389 (R)-citramalate synthase; Provisional
Probab=94.38 E-value=0.44 Score=28.49 Aligned_cols=107 Identities=14% Similarity=0.069 Sum_probs=45.7
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHH-----CCCHHHHHHHHHHHHHCCCCC-CCCCCC---CCCCHHHHHHHHHHHHHHCC
Q ss_conf 999999976998999867232501-----089999999865431101234-430036---74102789999753432102
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTGESS-----TLSHEEHCRIIELCVKTVASR-VPVMAG---IGSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tGE~~-----~Ls~~Er~~~~~~~~~~~~~r-~pii~g---v~~~~~~~~i~~a~~a~~~G 96 (292)
..++..+++|++.+-+...+++.+ .+|.+|-.+.+...++.++.. ..+.++ .+..+.+-+++.++.|.++|
T Consensus 76 ~di~~~~~a~~~~v~i~~~tS~~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~v~~~~ED~sr~~~~fl~e~~~~a~~ag 155 (487)
T PRK09389 76 VDIDAALECDVDSVHLVVPTSDLHIEYKLRKTREEVLEMAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYRAGIEAG 155 (487)
T ss_pred HHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 76999985797989999626899999886799999999999999999974977999210665557799999999999738
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4432001234334317889999999875302330121
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
|+-+.+.-. --..++.++.++++.+.+..+.||-++
T Consensus 156 a~~i~l~DT-vG~~~P~~~~~~i~~l~~~~~~~i~vH 191 (487)
T PRK09389 156 ADRICFCDT-VGILTPERSYELFKRLSESLKIPISIH 191 (487)
T ss_pred CCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 996224888-888799999999863004678548997
No 83
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=94.29 E-value=0.25 Score=30.23 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 10278999975343210244320012343343178899999998753
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~ 125 (292)
....+.-+++.+.+++.- + +-++. .-+..+.++..++-+.+.++
T Consensus 83 n~g~e~~l~~i~~~k~~~-~-~pvIa-Si~g~s~ee~~~~a~~~e~~ 126 (333)
T PRK07565 83 RGGPEEYLELIRRAKEAV-D-IPVIA-SLNGSSAGGWVDYARQIEEA 126 (333)
T ss_pred CCCHHHHHHHHHHHHHCC-C-CCEEE-ECCCCCHHHHHHHHHHHHHC
T ss_conf 868999999999877505-9-84598-74779989999999999764
No 84
>pfam01791 DeoC DeoC/LacD family aldolase. This family includes diverse aldolase enzymes. This family includes the enzyme deoxyribose-phosphate aldolase EC:4.1.2.4, which is involved in nucleotide metabolism. The family also includes a group of related bacterial proteins of unknown function. The family also includes tagatose 1,6-diphosphate aldolase (EC:4.1.2.40) is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=94.27 E-value=0.44 Score=28.51 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 8999975343210244320012
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
+|..++++.+.+.|+++|++.|
T Consensus 19 ~di~~l~~~a~~~g~~avcv~p 40 (231)
T pfam01791 19 ADIKALVAEALEPGASAVCVNP 40 (231)
T ss_pred HHHHHHHHHHHHHCCCEEEECH
T ss_conf 8999999999987999899878
No 85
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=94.25 E-value=0.57 Score=27.68 Aligned_cols=18 Identities=6% Similarity=-0.243 Sum_probs=6.9
Q ss_pred CCCHHHHHHHHHHHHHHC
Q ss_conf 410278999975343210
Q gi|254780276|r 78 GSNNTRESVELAQYAHSI 95 (292)
Q Consensus 78 ~~~~~~~~i~~a~~a~~~ 95 (292)
.....+..++..+.+++.
T Consensus 78 ~n~g~~~~~~~l~~~~~~ 95 (289)
T cd02810 78 PNLGLDVWLQDIAKAKKE 95 (289)
T ss_pred CCCCHHHHHHHHHHHHHC
T ss_conf 787889999999999861
No 86
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.23 E-value=0.58 Score=27.65 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 8868999999999999769989998672325
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGE 47 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE 47 (292)
..-|.+...+.++.+++.+|+||.+....++
T Consensus 37 s~~d~~~q~~~i~~li~~~vDgiIi~p~~~~ 67 (267)
T cd06322 37 ANQDLNKQLSDVEDFITKKVDAIVLSPVDSK 67 (267)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 9999999999999999749999999067610
No 87
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=94.23 E-value=0.1 Score=33.10 Aligned_cols=63 Identities=14% Similarity=0.033 Sum_probs=34.3
Q ss_pred HHHHHHHHCCCCEEE--CCCC--CCCHHHHHHHCCCCCCCCCCCCC------CCHHHHHHHHHCCCCCHHHHH
Q ss_conf 589999735984032--0132--21001243203344552222321------100244444311788279999
Q gi|254780276|r 170 LVSEQRLSCGFDFIQ--LSGE--DSSALGFNAHGGVGCISVTANVV------PRICAEFQQAMIRGDYRQALL 232 (292)
Q Consensus 170 ~~~~~~~~~~~~~~v--~~G~--~~~~~~~~~~G~~G~is~~~n~~------P~~~~~l~~~~~~gd~~~A~~ 232 (292)
.+.++.+..++++=+ ..|- .+-.++++..||...--|+++++ ++.+..+..-.++.+++.-++
T Consensus 230 ~VYdly~~~ddriPIiGvGGi~~~eDA~Efl~AGAsAVQvGtAvyy~g~~~f~~i~~~l~~fl~~~~~~si~e 302 (308)
T TIGR01037 230 MVYDLYKEVDDRIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGYKVFKKIIEGLIAFLKEEGFSSIEE 302 (308)
T ss_pred EHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCHHH
T ss_conf 0000477737823468632745589999999852202200022211775244888767889998728964477
No 88
>pfam01070 FMN_dh FMN-dependent dehydrogenase.
Probab=94.22 E-value=0.16 Score=31.72 Aligned_cols=179 Identities=16% Similarity=0.154 Sum_probs=99.2
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHH
Q ss_conf 1120177389888689999999999997699899986723250108999999986543110123443003674-102789
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG-SNNTRE 84 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~-~~~~~~ 84 (292)
+|..+.|+.-.+-...++-....+-.-+.|+- +..+|. .+.|.||- .+..++ +..++.. ..+-+.
T Consensus 58 ~Pi~iap~g~~~l~~~~ge~~lAraA~~~gi~--~~lss~---~~~~~e~i-------~~~~~~--~~~fQly~~~d~~~ 123 (301)
T pfam01070 58 LPFGIAPTGMQGLAHPDGELALARAAAAAGIP--FVLSTV---ASTSLEEV-------AAAAGG--PLWFQLYVPKDREL 123 (301)
T ss_pred CCEEECCCCHHHHCCCCHHHHHHHHHHHHCCC--EECCCC---CCCCHHHH-------HHHCCC--CEEEEEEECCCHHH
T ss_conf 87678740102213764589999999983587--004687---65552788-------985799--76899874588899
Q ss_pred HHHHHHHHHHCCCCCCCEE--CCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 9997534321024432001--2343-343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 85 SVELAQYAHSIGADALLVV--IPYY-NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~--~P~~-~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
+.++.+.|+++|++++.+. +|.. .++.+.---+..+.+.+.+++|+++= |+ +++|...++. ++. +-||
T Consensus 124 ~~~~i~ra~~ag~~al~ltvD~~~~g~r~~d~r~~~~i~~l~~~~~~PvivK------GI-~s~eDA~~a~-~~G-v~~I 194 (301)
T pfam01070 124 TEDLLERAEAAGYKALVLTVDTPVLGNRERDLRNGDDLAWLRDQWKGPLVLK------GI-LSPEDAKRAV-EAG-VDGI 194 (301)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEE------CC-CCHHHHHHHH-HCC-CCEE
T ss_conf 9999999997499979997268765778532043999999998669988998------28-9999999999-859-9999
Q ss_pred HCCC----------CCHHHHHHHHHHCCCCEEE-CCCC---CCCHHHHHHHCCCCCCCCC
Q ss_conf 0012----------2113589999735984032-0132---2100124320334455222
Q gi|254780276|r 162 KDAT----------GKIELVSEQRLSCGFDFIQ-LSGE---DSSALGFNAHGGVGCISVT 207 (292)
Q Consensus 162 K~~~----------~~~~~~~~~~~~~~~~~~v-~~G~---~~~~~~~~~~G~~G~is~~ 207 (292)
=-|. ...+...++.+..++++.+ +.|. ..-.+.++.+|++.+..|-
T Consensus 195 ~VSnHGGRqlD~~~~t~~~L~eI~~~v~~~~~i~~DGGIR~G~DV~KAlALGA~~V~iGR 254 (301)
T pfam01070 195 VVSNHGGRQLDGAPATIDALPEIVAAVGGRIPVLVDGGIRRGTDVLKALALGADAVLLGR 254 (301)
T ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHCCCCEEEECH
T ss_conf 964998544688867999999999985677489963874762689999980898665568
No 89
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=94.20 E-value=0.58 Score=27.61 Aligned_cols=135 Identities=6% Similarity=-0.015 Sum_probs=84.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC---CCCC-CCCCCCCCHHHHHH
Q ss_conf 7738988868999999999999769989998672325010899999998654311012---3443-00367410278999
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA---SRVP-VMAGIGSNNTRESV 86 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~---~r~p-ii~gv~~~~~~~~i 86 (292)
|-.+..--+..+.+.+.+.-+...|+|=+====..+...++-.+||.+.+-.+++.+. |+.. ..+.+++...++.+
T Consensus 172 tiiKPklGLsp~~~a~v~ye~~~GGvDfIKDDE~l~~~pf~p~eeRv~~v~eai~ra~~eTGe~k~y~~NiTa~~~eeM~ 251 (477)
T CHL00040 172 CTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYLNATAGTCEEMY 251 (477)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHH
T ss_conf 20367779997999999999970487452076556798888789999999999999999769801899961479899999
Q ss_pred HHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE--------ECHHHCCCCCCHHHHHHHH
Q ss_conf 97534321024432001234334317889999999875302330121--------0011111211106899974
Q gi|254780276|r 87 ELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY--------NNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY--------n~P~~~g~~~~~~~l~~L~ 152 (292)
++++.+.+.|+.++|+-.-..--..-+.+.+|. +..+++|-++ -.|. ..++...+.||.
T Consensus 252 ~RAe~a~e~G~~~vMvd~~t~G~~Al~~La~~~----Rd~~l~iH~HRAghga~~R~p~---hGIs~rVlaKl~ 318 (477)
T CHL00040 252 KRAVFARELGVPIVMHDYLTGGFTANTSLAHYC----RDNGLLLHIHRAMHAVIDRQKN---HGIHFRVLAKAL 318 (477)
T ss_pred HHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHH----HHCCCEEEEECCCHHHCCCCCC---CCCCHHHHHHHH
T ss_conf 999999970996799985200057899999976----5439558840352022157876---662199999999
No 90
>pfam01208 URO-D Uroporphyrinogen decarboxylase (URO-D).
Probab=94.14 E-value=0.48 Score=28.23 Aligned_cols=88 Identities=15% Similarity=0.162 Sum_probs=43.8
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE---ECCCCCC----CCHHHHHHHHHHHHHH-HC
Q ss_conf 99986543110123443003674102789999753432102443200---1234334----3178899999998753-02
Q gi|254780276|r 56 HCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV---VIPYYNK----PNRRGLLAHFGEIATT-VS 127 (292)
Q Consensus 56 r~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v---~~P~~~~----~~~~~i~~~~~~i~~~-~~ 127 (292)
..+.++.+.+..++.+|++..++++=|- +..+.. |.+-++. .-|-... .--+-+.+|.+...++ ++
T Consensus 121 v~eai~~l~~~l~~~~plig~~~gP~Tl-a~~l~~-----G~~~~~~~l~~~pe~~~~ll~~~t~~~~~~~~~qi~aGad 194 (337)
T pfam01208 121 VLEAIRLLRKELGDEVPLIGFVGGPFTL-ASYLVE-----GFEKFKKLMYKDPELVHALLDKLTDAVIEYLKAQIEAGAD 194 (337)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHHH-HHHHHC-----CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999759997479864778999-999977-----9899999999799999999999999999999999982996
Q ss_pred CCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 33012100111112111068999743
Q gi|254780276|r 128 SPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 128 ~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
. |++++ + ++-.+|++.+.+.+.
T Consensus 195 ~-i~i~D-s--~~~~ls~~~~~ef~~ 216 (337)
T pfam01208 195 A-IQIFD-S--WAGLLSPEDFREFVL 216 (337)
T ss_pred E-EEEEC-C--CCCCCCHHHHHHHHH
T ss_conf 7-99834-7--888789899999989
No 91
>PRK13135 consensus
Probab=94.13 E-value=0.6 Score=27.51 Aligned_cols=213 Identities=13% Similarity=0.040 Sum_probs=121.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|++...+.++.+.++|+|-|=++=-. .++. -.+.+.-.++++.+.+.. .+|++.
T Consensus 21 ~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~--~~Pivl 98 (267)
T PRK13135 21 TFITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRC--QVPIVL 98 (267)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCEEE
T ss_conf 887171899899999999999759999997899898666589999999999976984999999999863358--998899
Q ss_pred CCCCCH--HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 674102--789999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNN--TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~--~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+. -...-++++.|+++|+||+++.= +..++ .+-|...++.-++.++..=.|. -+.+-+.++++
T Consensus 99 M~Y~N~i~~yG~e~F~~~~~~~GvdGlIipD-----LP~ee-~~~~~~~~~~~~l~~I~lvsPt-----t~~~Ri~~i~~ 167 (267)
T PRK13135 99 MGYYNPIFAYGLERFAADAAAAGVDGVLLVD-----LPPEE-AEEFKACADRHGLDVIFLLTPT-----SDESRIRTVAR 167 (267)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEECCC-----CCHHH-HHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 8423099884689999999974997476378-----99788-8999999987296189980898-----95799999996
Q ss_pred HCCHHHHH---------HCCC-CCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20302331---------0012-211-3589999735984032013-2210012432033445522223211002444443
Q gi|254780276|r 154 TYPNIVGV---------KDAT-GKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVPRICAEFQQA 221 (292)
Q Consensus 154 ~~pni~gi---------K~~~-~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~ 221 (292)
.-+.+++. +... .+. ..+.++++...-.+.+--| ....-...+..+++|.+.|++ .+++++.
T Consensus 168 ~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~i~~~ADGvIVGSa------iVk~ie~ 241 (267)
T PRK13135 168 LGRGFVYYVSVTGVTGARSGVEATVGGNVAKIREKITVPVVVGFGISTPQQAADVAAMADGVVVGSA------LVKLFEL 241 (267)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECHH------HHHHHHH
T ss_conf 1898189985456667764444889999999986068984898167999999999805999998789------9999986
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 117882799999999999999984
Q gi|254780276|r 222 MIRGDYRQALLYQDKLMPLHQALF 245 (292)
Q Consensus 222 ~~~gd~~~A~~l~~~l~~l~~~~~ 245 (292)
.. ..+...+++..+..+.+++-
T Consensus 242 ~~--~~~~~~~i~~fv~~lk~ai~ 263 (267)
T PRK13135 242 HR--GEELRQEVATFVASLRQAIP 263 (267)
T ss_pred CC--CHHHHHHHHHHHHHHHHHHH
T ss_conf 08--18789999999999999975
No 92
>PRK13120 consensus
Probab=94.05 E-value=0.62 Score=27.39 Aligned_cols=185 Identities=14% Similarity=0.078 Sum_probs=100.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|.-|++...+.++-+.+.|+|-|=++=-. .++. -.|.+.-.++++..... ...+|++.
T Consensus 25 ~yitaG~P~~~~t~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~l~~vl~~v~~~r~~-~~~~Pivl 103 (285)
T PRK13120 25 PYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGVGLRRVLELVADFRRD-DSVTPVVL 103 (285)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCEEE
T ss_conf 78578589989999999999976999999789878745668999999999997699844699999998734-89888898
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++.= ++.++--+ |...+...++..+.-=.|. -+.+-+.++++
T Consensus 104 M~Y~Npi~~yG~e~F~~~~~~aGvdGlIIpD-----LP~EE~~~-~~~~~~~~gi~~I~LiaPt-----T~~eRi~~I~~ 172 (285)
T PRK13120 104 MGYANPIERMGQRAFAQAAQAAGVDGVLVVD-----YPPEEVDE-FAAMLAEAGVAPIFLLAPT-----STEARIEAIGR 172 (285)
T ss_pred EEHHHHHHHHHHHHHHHHHHHCCCCEEECCC-----CCHHHHHH-HHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 6105499998799999999983987796479-----99799999-9999996699658995799-----98999999995
Q ss_pred HCCHHH---------HHHCC-CCCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 203023---------31001-2211-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIV---------GVKDA-TGKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~---------giK~~-~~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
.-..++ |.+.. +.+. +.+.++++...-.+.+--| ....-...+...++|.+.|++
T Consensus 173 ~s~GFvY~VS~~GVTG~~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~ADGvIVGSA 239 (285)
T PRK13120 173 VARGYVYYVSLKGVTGAGSLDTDDVARKLALIRRHVHIPVGVGFGIRDAASAQRIAAHADAVVIGSK 239 (285)
T ss_pred HCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEECHH
T ss_conf 0898189986565468875566889999999997269975999625989999999702999998789
No 93
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=94.00 E-value=0.64 Score=27.33 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=17.4
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 999865431101234430036741027
Q gi|254780276|r 56 HCRIIELCVKTVASRVPVMAGIGSNNT 82 (292)
Q Consensus 56 r~~~~~~~~~~~~~r~pii~gv~~~~~ 82 (292)
..+.++...+..++++|++..++++=|
T Consensus 111 ~~eai~~l~~~~~~~~plig~~ggP~T 137 (330)
T cd03465 111 LLEAIRLLKEELGDRVPVIGAVGGPFT 137 (330)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCHHH
T ss_conf 999999999972898747975565799
No 94
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=93.99 E-value=0.64 Score=27.32 Aligned_cols=68 Identities=18% Similarity=0.264 Sum_probs=50.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCE--ECCCC------CCCCHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 44300367410278999975343210-2443200--12343------343178899999998753023301210011
Q gi|254780276|r 70 RVPVMAGIGSNNTRESVELAQYAHSI-GADALLV--VIPYY------NKPNRRGLLAHFGEIATTVSSPIYIYNNPS 137 (292)
Q Consensus 70 r~pii~gv~~~~~~~~i~~a~~a~~~-Gad~i~v--~~P~~------~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~ 137 (292)
.+|+++.+++.+.+|-.+.++..++. |+|++-+ ..|.- +..+.+.+.+..+.+.+.+++|+++==-|.
T Consensus 91 ~~pvi~si~~~~~~d~~~~~~~l~~~~~ad~ielNiScPn~~~~g~~~~~~~~~l~~i~~~v~~~~~~Pv~vKlsP~ 167 (301)
T PRK07259 91 DTPIIANIAGSTPEEYVEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKSVSKVPVIVKLTPN 167 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99879973767768999999986455688889996547888852666087999999999999873489779980787
No 95
>PRK13135 consensus
Probab=93.98 E-value=0.52 Score=27.97 Aligned_cols=127 Identities=22% Similarity=0.215 Sum_probs=68.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------------------CHHHHHHHHHHHHHHHCCCCE--EE
Q ss_conf 0367410278999975343210244320012343343------------------178899999998753023301--21
Q gi|254780276|r 74 MAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKP------------------NRRGLLAHFGEIATTVSSPIY--IY 133 (292)
Q Consensus 74 i~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~------------------~~~~i~~~~~~i~~~~~~pi~--iY 133 (292)
+.-+|.++.+.+.+.++...+.|+|.+-+.-|+--+. +-+.+++..+++....+.|++ -|
T Consensus 22 yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~PivlM~Y 101 (267)
T PRK13135 22 FITAGDPDLATTEALIPLLAESGADIIELGVPFSDPMADGPTIQLSSERALAAGTTLPRILAMVRSVRRRCQVPIVLMGY 101 (267)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 87171899899999999999759999997899898666589999999999976984999999999863358998899842
Q ss_pred ECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH---HHHHHHHHHCCCCEEECCC--CCCCHHHHHHHCCCCCC
Q ss_conf 00111112111068999743203023310012211---3589999735984032013--22100124320334455
Q gi|254780276|r 134 NNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI---ELVSEQRLSCGFDFIQLSG--EDSSALGFNAHGGVGCI 204 (292)
Q Consensus 134 n~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~---~~~~~~~~~~~~~~~v~~G--~~~~~~~~~~~G~~G~i 204 (292)
-||.. .+..+-+.+-+++. .+-|+=-.--.. ..+....+..+-++..+.. ....-+.....-+.||+
T Consensus 102 ~N~i~---~yG~e~F~~~~~~~-GvdGlIipDLP~ee~~~~~~~~~~~~l~~I~lvsPtt~~~Ri~~i~~~s~GFi 173 (267)
T PRK13135 102 YNPIF---AYGLERFAADAAAA-GVDGVLLVDLPPEEAEEFKACADRHGLDVIFLLTPTSDESRIRTVARLGRGFV 173 (267)
T ss_pred CHHHH---HHHHHHHHHHHHHC-CCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEE
T ss_conf 30998---84689999999974-99747637899788899999998729618998089895799999996189818
No 96
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=93.97 E-value=0.5 Score=28.08 Aligned_cols=132 Identities=16% Similarity=0.186 Sum_probs=79.8
Q ss_pred HHHHHHCCCCEEEECCCCCCHHCCCHHHH----HHHHHHHHHCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHCCCCCCCE
Q ss_conf 99999769989998672325010899999----998654311012344300367410278-9999753432102443200
Q gi|254780276|r 28 IEWQITEGSGGLVPAGTTGESSTLSHEEH----CRIIELCVKTVASRVPVMAGIGSNNTR-ESVELAQYAHSIGADALLV 102 (292)
Q Consensus 28 i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er----~~~~~~~~~~~~~r~pii~gv~~~~~~-~~i~~a~~a~~~Gad~i~v 102 (292)
++.+-..+++....-+ .++...+....+ .++++.+.+ .++|.--.+.+--.+.+ -+.++-+.+.+.|..++.+
T Consensus 55 ~~~~~~~~i~~~~~~~-~~~~~~~~d~~~~~~nd~~a~~~~~-~pdrf~~~~~v~p~~~~~a~~E~er~v~~~gf~g~~l 132 (293)
T COG2159 55 LAFMDAAGIDLFVLSG-MGEVAIIPDLRRALANDDLAALAAE-YPDRFVGFARVDPRDPEAAAEELERRVRELGFVGVKL 132 (293)
T ss_pred HHHHCCCCCEEEEECC-CCCCCCHHHHHHHHHHHHHHHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 7675200231576405-5432222556543126999999875-8964678776588976669999999998638504896
Q ss_pred ECCCCC-CCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCC-----CCHHHHHHHHHHCCHHHHHH
Q ss_conf 123433-4317889999999875302330121001111121-----11068999743203023310
Q gi|254780276|r 103 VIPYYN-KPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIE-----MDVDTMAELAATYPNIVGVK 162 (292)
Q Consensus 103 ~~P~~~-~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~-----~~~~~l~~L~~~~pni~giK 162 (292)
.|+.-. .++++. +...-+.|+..++|+.++.=+...+.. ..+-.+..+++++|++.-|=
T Consensus 133 ~p~~~~~~~~~~~-~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~~~~p~~~~~va~~fP~l~IVl 197 (293)
T COG2159 133 HPVAQGFYPDDPR-LYPIYEAAEELGVPVVIHTGAGPGGAGLEKGHSDPLYLDDVARKFPELKIVL 197 (293)
T ss_pred CCCCCCCCCCCHH-HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 5553467887457-8999999997699889972899766664546678689999998689988899
No 97
>PRK13129 consensus
Probab=93.82 E-value=0.68 Score=27.11 Aligned_cols=184 Identities=15% Similarity=0.134 Sum_probs=105.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.+.|+|-|=++=-. .++. -.+.+.-.++++.+.+.. ++|++.
T Consensus 23 ~yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~--~~Pivl 100 (267)
T PRK13129 23 PFLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKL--TIPIIL 100 (267)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCEEE
T ss_conf 887071899899999999999779999997998888776589999999999976987899999999854347--888899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++.= +..++. +-|...++..++..+..=.|. -+.+-+.++++
T Consensus 101 M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipD-----LP~eE~-~~~~~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~~ 169 (267)
T PRK13129 101 FTYYNPLLNRGMERFCEQAAAAGVAGLVVPD-----LPLEEA-EKLSPIAAERGIDLILLVAPT-----TPAERMKRIAQ 169 (267)
T ss_pred EEEHHHHHHHHHHHHHHHHHHCCCCEEECCC-----CCHHHH-HHHHHHHHHCCCEEEEEECCC-----CCHHHHHHHHH
T ss_conf 8610789885599999999866987576789-----998999-999999985398168994899-----96899999981
Q ss_pred HCCHHHHH---------HCCCC-CH-HHHHHHHHHCCCCEEECCC-CC-CCHHHHHHHCCCCCCCCCC
Q ss_conf 20302331---------00122-11-3589999735984032013-22-1001243203344552222
Q gi|254780276|r 154 TYPNIVGV---------KDATG-KI-ELVSEQRLSCGFDFIQLSG-ED-SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~gi---------K~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~-~~~~~~~~~G~~G~is~~~ 208 (292)
.-..+++. +.... +. ..+.++++..+..+.+--| .. ++.-.....|++|++.|++
T Consensus 170 ~~~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~ADGvIVGSa 237 (267)
T PRK13129 170 QSRGFTYLVSVTGVTGERSQMENRVESLLQQLRQVTSKPIAVGFGISGPEQARQVREWGADGAIVGSA 237 (267)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 68980898734665676544508899999999983489817884479999999998549999998789
No 98
>pfam02581 TMP-TENI Thiamine monophosphate synthase/TENI. Thiamine monophosphate synthase (TMP) (EC:2.5.1.3) catalyses the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate. This Pfam family also includes the regulatory protein TENI.
Probab=93.81 E-value=0.47 Score=28.29 Aligned_cols=76 Identities=20% Similarity=0.229 Sum_probs=51.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHH
Q ss_conf 0177389888689999999999997699899986723250108999999986543110123-443003674102789999
Q gi|254780276|r 9 LITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGSNNTRESVE 87 (292)
Q Consensus 9 ~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~~~~~~~i~ 87 (292)
++||-. ++.+.+...++..++.|++-+-+=-- .++.+|+.++++.+.+.++. ++++++.- +.
T Consensus 3 ~It~~~----~~~~~~~~~~~~~l~~Gv~~vqlR~K-----~~~~~~~~~~a~~l~~i~~~~~~~liin~---~~----- 65 (180)
T pfam02581 3 LVTDPG----LDGEDLLEVVEEALKGGVTIVQLREK-----DLDDRELLELAERLRALCRKYGVPLIIND---RV----- 65 (180)
T ss_pred EECCCC----CCCHHHHHHHHHHHHCCCCEEEECCC-----CCCHHHHHHHHHHHHHHHHHHCCEEEECC---HH-----
T ss_conf 986997----47547999999999869999998789-----87999999999999999998299799878---59-----
Q ss_pred HHHHHHHCCCCCCCEE
Q ss_conf 7534321024432001
Q gi|254780276|r 88 LAQYAHSIGADALLVV 103 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~ 103 (292)
+.|.+.|+||+-+.
T Consensus 66 --~lA~~~~~dGvHL~ 79 (180)
T pfam02581 66 --DLALAVGADGVHLG 79 (180)
T ss_pred --HHHHHHCCCEEECC
T ss_conf --99997297989448
No 99
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=93.77 E-value=0.7 Score=27.05 Aligned_cols=100 Identities=16% Similarity=0.173 Sum_probs=52.4
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--------CCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCC
Q ss_conf 1112017738988868999999999999769989998672--------3250108999999986543110123-443003
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGT--------TGESSTLSHEEHCRIIELCVKTVAS-RVPVMA 75 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~--------tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~ 75 (292)
+.+|+.+-+.+||.+....+.-+.+ ..+.|+.-|.+.++ ..-...+..++...-++.+++.+.. ...+++
T Consensus 17 v~~pm~~~~~~~G~~~~~~~~~y~~-rA~gG~GlIi~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vH~~G~~i~~ 95 (343)
T cd04734 17 VSTAHATNYAEDGLPSERYIAYHEE-RARGGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMI 95 (343)
T ss_pred EECCCCCCCCCCCCCCHHHHHHHHH-HHCCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
T ss_conf 5454678868899899999999999-967898379970067646556899987668999999999999999735881898
Q ss_pred CCC-------------------------------CCHHHHH-------HHHHHHHHHCCCCCCCEECC
Q ss_conf 674-------------------------------1027899-------99753432102443200123
Q gi|254780276|r 76 GIG-------------------------------SNNTRES-------VELAQYAHSIGADALLVVIP 105 (292)
Q Consensus 76 gv~-------------------------------~~~~~~~-------i~~a~~a~~~Gad~i~v~~P 105 (292)
+.. ..+.+|. .+-|+.|+++|+|+|.+..-
T Consensus 96 QL~H~Gr~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~eeI~~ii~~f~~AA~~A~~AGfDgVEIH~a 163 (343)
T cd04734 96 QLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAA 163 (343)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 71157766676679986268888866567987944899999999999999999999739988984457
No 100
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=93.74 E-value=0.71 Score=27.01 Aligned_cols=123 Identities=20% Similarity=0.288 Sum_probs=74.5
Q ss_pred CEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 00111201773898886899999999999976998999867232501089999999865431101234430036741027
Q gi|254780276|r 3 RGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT 82 (292)
Q Consensus 3 ~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~ 82 (292)
+|.+..-++|. -+.+...++.+-+.+.|||.|.+--.+| .||..+-.++++...+..+ +||-.++-+ |
T Consensus 142 q~~i~YT~sPv-----Ht~e~yv~~akel~~~g~DSIciKDmaG---lltP~~ayelVk~iK~~~~--~pv~lHtH~--T 209 (472)
T COG5016 142 QGTISYTTSPV-----HTLEYYVELAKELLEMGVDSICIKDMAG---LLTPYEAYELVKAIKKELP--VPVELHTHA--T 209 (472)
T ss_pred EEEEEECCCCC-----CCHHHHHHHHHHHHHCCCCEEEEECCCC---CCCHHHHHHHHHHHHHHCC--CEEEEECCC--C
T ss_conf 89987426886-----5289999999999972798788400002---6986889999999997459--706985045--5
Q ss_pred HHHHHHH-HHHHHCCCCCCCE-ECCCCCCC---------------------CH---HHHHHHHHHHHHHH----------
Q ss_conf 8999975-3432102443200-12343343---------------------17---88999999987530----------
Q gi|254780276|r 83 RESVELA-QYAHSIGADALLV-VIPYYNKP---------------------NR---RGLLAHFGEIATTV---------- 126 (292)
Q Consensus 83 ~~~i~~a-~~a~~~Gad~i~v-~~P~~~~~---------------------~~---~~i~~~~~~i~~~~---------- 126 (292)
...-..+ -.|-++|+|.+=. +.|.-+.. .. .++.+||+++-..-
T Consensus 210 sG~a~m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY~~~~~~~~~~ 289 (472)
T COG5016 210 SGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKYKGLLEPQAKG 289 (472)
T ss_pred CCHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 56179999999981764222100455578889958999999627998765369999999999999999875326840147
Q ss_pred -CCCCEEEECHH
Q ss_conf -23301210011
Q gi|254780276|r 127 -SSPIYIYNNPS 137 (292)
Q Consensus 127 -~~pi~iYn~P~ 137 (292)
|--|.+|+.|.
T Consensus 290 ~d~~ili~qvPG 301 (472)
T COG5016 290 VDPRILIYQVPG 301 (472)
T ss_pred CCCCCEEEECCH
T ss_conf 887506763771
No 101
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=93.73 E-value=0.71 Score=27.00 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=15.4
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 9865431101234430036741027
Q gi|254780276|r 58 RIIELCVKTVASRVPVMAGIGSNNT 82 (292)
Q Consensus 58 ~~~~~~~~~~~~r~pii~gv~~~~~ 82 (292)
+.++.+.+..++++|+|..++++=|
T Consensus 116 eai~~lr~~l~~~vpliGf~g~P~T 140 (326)
T cd03307 116 EAIKILKEKYGEEVPVIGGMTGPAS 140 (326)
T ss_pred HHHHHHHHHCCCCCCEEEEECCHHH
T ss_conf 9999999971899766987076899
No 102
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=93.72 E-value=0.24 Score=30.35 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEE--CCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 027899997534321024432001--2343-3431788999999987530233012100111112111068999743203
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVV--IPYY-NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYP 156 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~--~P~~-~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~p 156 (292)
.+-+.+.++.++|+++|+.++.+. .|.+ .+++.+ ..+.+.+.+++|+++= |+ +++|.-.+.. ++.
T Consensus 126 ~d~~~~~~li~rA~~aG~~al~lTvD~p~~g~R~~w~----~i~~l~~~~~~p~i~K------Gi-~~~~DA~~a~-~~G 193 (299)
T cd02809 126 RDREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWD----DLAWLRSQWKGPLILK------GI-LTPEDALRAV-DAG 193 (299)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHH----HHHHHHHHCCCCEEEE------CC-CCHHHHHHHH-HCC
T ss_conf 9999999999999985999899970589878879999----9999998669987997------27-8899999999-859
Q ss_pred HHHHHHCCC---------C-CHHHHHHHHHHCCCCEEEC-CC---CCCCHHHHHHHCCCCCCCCC
Q ss_conf 023310012---------2-1135899997359840320-13---22100124320334455222
Q gi|254780276|r 157 NIVGVKDAT---------G-KIELVSEQRLSCGFDFIQL-SG---EDSSALGFNAHGGVGCISVT 207 (292)
Q Consensus 157 ni~giK~~~---------~-~~~~~~~~~~~~~~~~~v~-~G---~~~~~~~~~~~G~~G~is~~ 207 (292)
+-||=-|+ + .++...++.+..++++.++ .| ...-.+.++.+|++.+..|=
T Consensus 194 -~dgI~VSNHGGRqlD~~p~~i~~L~~i~~~v~~~~~v~~DgGvR~G~Dv~KAlaLGA~~V~iGR 257 (299)
T cd02809 194 -ADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGR 257 (299)
T ss_pred -CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECH
T ss_conf -9889972887333688877899999999985467289971884753689999976998898778
No 103
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=93.60 E-value=0.74 Score=26.84 Aligned_cols=192 Identities=16% Similarity=0.099 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC------CCCC--CHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 888689999999999997699899986------7232--50108999999986543110123443003674102789999
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPA------GTTG--ESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVE 87 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~------G~tG--E~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~ 87 (292)
+-+++.+...++++.+.+.||+-|=+. |++- -+...+..|+.+.+....+.++-.+-++.|.+ + ++
T Consensus 19 ~~~fs~e~k~~ia~~Ld~aGVd~IEVghg~gl~~ss~~~g~~~~~d~e~i~~~~~~~~~aki~~l~~pg~~---~---~~ 92 (337)
T PRK08195 19 RHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAADVVKQAKLATLLLPGIG---T---IE 92 (337)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCC---C---HH
T ss_conf 99889999999999999809899994478887775334678779839999999997432837899635655---5---88
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH---HC-CHHHHHHC
Q ss_conf 753432102443200123433431788999999987530233012100111112111068999743---20-30233100
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA---TY-PNIVGVKD 163 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~---~~-pni~giK~ 163 (292)
-.+.|.+.|++.+-+..+ .++.++..-+-+.+....+.+..+-. .+ ...+++.+.+.++ +. ...+++.|
T Consensus 93 dl~~A~~~gv~~vria~~----~tead~~~~~i~~ar~~G~~v~~~lm--~s-~~~~~e~l~~~a~~~~~~Gad~I~l~D 165 (337)
T PRK08195 93 DLKMAYDAGVRVVRVATH----CTEADVSEQHIGLARELGMDTVGFLM--MS-HMASPEKLAEQAKLMESYGAQCVYVVD 165 (337)
T ss_pred HHHHHHHCCCCEEEEEEE----CCHHHHHHHHHHHHHHCCCEEEEEEH--HC-CCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 899999579897999863----14887799999999977993999751--10-248999999999999865999999789
Q ss_pred CCCCH--HH----HHHHHHHCCCCEEE-CCCCCCC------HHHHHHHCC---CCCCCCC----CCCCCCHHHHHHH
Q ss_conf 12211--35----89999735984032-0132210------012432033---4455222----2321100244444
Q gi|254780276|r 164 ATGKI--EL----VSEQRLSCGFDFIQ-LSGEDSS------ALGFNAHGG---VGCISVT----ANVVPRICAEFQQ 220 (292)
Q Consensus 164 ~~~~~--~~----~~~~~~~~~~~~~v-~~G~~~~------~~~~~~~G~---~G~is~~----~n~~P~~~~~l~~ 220 (292)
|.|.+ .. +..+++..++++.+ |-+++.. -+.++..|+ ++.+.|+ ||.--|..+...+
T Consensus 166 T~G~~~P~~v~~~v~~l~~~l~~~i~igfH~HNnlGlAvANslaAveaGA~~ID~Ti~GlGegAGNa~lE~lva~l~ 242 (337)
T PRK08195 166 SAGALLPDDVRARVRALRAALKPDTQVGFHGHHNLGLGVANSLAAVEAGADRIDASLAGFGAGAGNAPLEVLVAVLD 242 (337)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 87667999999999999986499854999853886759999999998099999850534488878738999999997
No 104
>PRK08999 hypothetical protein; Provisional
Probab=93.59 E-value=0.34 Score=29.30 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCC
Q ss_conf 886899999999999976998999867232501089999999865431101
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTV 67 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~ 67 (292)
...|.+.+.+.++..++.|+.-+.+ ..-.|+.+++.++.+.+.+-+
T Consensus 139 ~~~~~~~~l~~l~~al~~G~~liQl-----R~K~l~~~~~~~~a~~~~~lc 184 (312)
T PRK08999 139 AEHDLAELLAGLERALAAGIRLIQL-----RAPQMPPAAYRDLAREAVGLC 184 (312)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEE-----ECCCCCHHHHHHHHHHHHHHH
T ss_conf 7547699999999886357849999-----878899799999999999999
No 105
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.59 E-value=0.41 Score=28.74 Aligned_cols=44 Identities=18% Similarity=0.158 Sum_probs=19.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 10278999975343210244320012343343178899999998753
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~ 125 (292)
....+..+++.+.+++.- + +-++. .-+..+.++..++-+.+.++
T Consensus 81 n~g~e~~l~~i~~~~~~~-~-~pvI~-Si~g~s~ee~~~~a~~~~~~ 124 (325)
T cd04739 81 NLGPEEYLELIRRAKRAV-S-IPVIA-SLNGVSAGGWVDYARQIEEA 124 (325)
T ss_pred CCCHHHHHHHHHHHHHHC-C-CCEEE-EECCCCHHHHHHHHHHHHHC
T ss_conf 758999999999987535-9-87598-71689989999999999764
No 106
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=93.55 E-value=0.76 Score=26.79 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=17.2
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 998654311012344300367410278
Q gi|254780276|r 57 CRIIELCVKTVASRVPVMAGIGSNNTR 83 (292)
Q Consensus 57 ~~~~~~~~~~~~~r~pii~gv~~~~~~ 83 (292)
.+.++.+.+..++++|+|..++++=|-
T Consensus 124 ~eai~~lk~~l~~~vpligf~ggP~Tl 150 (339)
T PRK06252 124 LEAIKILKEKVGEDVPIIAGMTGPASL 150 (339)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCHHHH
T ss_conf 999999999818986179646777999
No 107
>PRK13123 consensus
Probab=93.50 E-value=0.77 Score=26.72 Aligned_cols=182 Identities=9% Similarity=0.074 Sum_probs=99.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHC------------CCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----25010------------8999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESST------------LSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~------------Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.+.|+|-|=++=-. .++.. .+.+ .+++.+.+ .+.++|++.
T Consensus 19 ~yitaG~P~~~~~~~~i~~l~~~GaDiiElGiPFSDPvADGPvIq~A~~rAL~~G~~~~---~~~~~~~~-~~~~~Pivl 94 (256)
T PRK13123 19 PYIMAGDGGLDGLKETIRFLEEAGVSAIEIGIPFSDPVADGPVIQLAGLRALASGVSLK---AILQALIE-KETQIPLVI 94 (256)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHH---HHHHHHHH-CCCCCCEEE
T ss_conf 88618689978999999999976999999789988866657999998999986799699---99988763-057998897
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++. - +..++- ..|...++.-++..+.-=.|. -+.+-+.++++
T Consensus 95 MtY~N~i~~yG~e~F~~~~~~~GvdGvIip--D---LP~eE~-~~~~~~~~~~gi~~I~liaPt-----t~~~Ri~~i~~ 163 (256)
T PRK13123 95 MTYINPVFQYGIERFVEDLAETGVKGLIIP--D---LPYEHQ-DFIAPLLRDTDIALIPLVSLT-----SPIERQKEIIK 163 (256)
T ss_pred EEHHHHHHHCCHHHHHHHHHHCCCCEEECC--C---CCHHHH-HHHHHHHHHCCCCEEEECCCC-----CCHHHHHHHHH
T ss_conf 404258987189999999997499789737--9---996789-999999997699778640899-----93889999986
Q ss_pred HCCHHHHHH---CCCC-------CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 203023310---0122-------11-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIVGVK---DATG-------KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~giK---~~~~-------~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
.-..+++.= -.+| +. ..+.++++..+-.+.+--| ....-...+...++|++.|++
T Consensus 164 ~a~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 230 (256)
T PRK13123 164 EAEGFIYAVAVNGVTGKRGNYRDDLDSHLEKLKSIAHIPVLAGFGISTLEDVERFNAVCDGVIVGSK 230 (256)
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEHHH
T ss_conf 0788489974455667653333889999999985689987997688999999999713999997299
No 108
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=93.46 E-value=0.78 Score=26.68 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+.-..+++-+++.|++.+=+. |+...-.+.++..++..+ .+++|.|.- -.-+.++.|.++|++
T Consensus 22 ~~~e~a~~~a~Ali~gGi~~IEIT--------l~sp~a~e~I~~l~~~~p---~~lIGAGTV---L~~~q~~~a~~aGa~ 87 (211)
T COG0800 22 DDVEEALPLAKALIEGGIPAIEIT--------LRTPAALEAIRALAKEFP---EALIGAGTV---LNPEQARQAIAAGAQ 87 (211)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE--------CCCCCHHHHHHHHHHHCC---CCEECCCCC---CCHHHHHHHHHCCCC
T ss_conf 899999999999997698769996--------479878999999998674---658824556---699999999985997
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC----CCCCHHHHHHH
Q ss_conf 32001234334317889999999875302330121001111121110689997432030233100----12211358999
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD----ATGKIELVSEQ 174 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~----~~~~~~~~~~~ 174 (292)
.+ ..|- .+.++.++ |..-++|++ | |+ +++..+.... +. ....+|. .+|-......+
T Consensus 88 fi--VsP~----~~~ev~~~----a~~~~ip~~----P---G~-~TptEi~~Al-e~-G~~~lK~FPa~~~Gg~~~~ka~ 147 (211)
T COG0800 88 FI--VSPG----LNPEVAKA----ANRYGIPYI----P---GV-ATPTEIMAAL-EL-GASALKFFPAEVVGGPAMLKAL 147 (211)
T ss_pred EE--ECCC----CCHHHHHH----HHHCCCCCC----C---CC-CCHHHHHHHH-HC-CHHHEEECCCCCCCCHHHHHHH
T ss_conf 89--8999----99999999----986799636----8---87-9989999999-80-7224564373113769899987
Q ss_pred HHHCCCCEEE--CCCC-CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 9735984032--0132-2100124320334455222232110024444431178827999999999999
Q gi|254780276|r 175 RLSCGFDFIQ--LSGE-DSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 (292)
Q Consensus 175 ~~~~~~~~~v--~~G~-~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l 240 (292)
.--+ +++.+ -.|. ...+-+++..| ..++.--+.+.|+.. ..+|||++..++-.....+
T Consensus 148 ~gP~-~~v~~~pTGGVs~~N~~~yla~g-v~avG~Gs~l~~~~~------~~~~~~~~i~~~a~~~~~~ 208 (211)
T COG0800 148 AGPF-PQVRFCPTGGVSLDNAADYLAAG-VVAVGLGSWLVPKDL------IAAGDWDRITELAREAVAL 208 (211)
T ss_pred CCCC-CCCEEEECCCCCHHHHHHHHHCC-CEEEECCCCCCCHHH------HHCCCHHHHHHHHHHHHHH
T ss_conf 3899-99858546987877799997178-059954744267355------5314499999999999998
No 109
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=93.44 E-value=0.52 Score=27.98 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=61.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+.++..++-.-+.+...|.-. +.|...+...+.-..++...++. ..+||..+.-+... .+.++.|-++|++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIiq~-s~~~~~~~~~~~~~~~~~~~a~~--~~VPV~lHLDHg~~---~e~i~~ai~~Gfs 99 (281)
T PRK06806 26 ANMEMVMGAIKAAEELSSPLILQI-AEVRLNHSPLHMIGPLMVAAAKK--ATVPVAVHFDHGMT---FEKIKEALEIGFT 99 (281)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEC-CHHHHCCCCHHHHHHHHHHHHHH--CCCCEEEECCCCCC---HHHHHHHHHCCCC
T ss_conf 999999999999999699989995-64333246099999999999974--79988997389899---9999999982998
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 32001234334317889999999875
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIAT 124 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~ 124 (292)
-||+-... .+-++=++.-+++.+
T Consensus 100 SVM~DgS~---l~~eeNi~~Tkevve 122 (281)
T PRK06806 100 SVMFDGSH---YPLEENIQKTKEIVE 122 (281)
T ss_pred EEEEECCC---CCHHHHHHHHHHHHH
T ss_conf 79960998---999999999999999
No 110
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=93.33 E-value=0.82 Score=26.54 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCC--CCHHH----HHHHHHHHHHHH---CCCCEEEE
Q ss_conf 1027899997534321024432001234334--31788----999999987530---23301210
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNK--PNRRG----LLAHFGEIATTV---SSPIYIYN 134 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~--~~~~~----i~~~~~~i~~~~---~~pi~iYn 134 (292)
..-|+-+++.++...++|+|++++.-|.-.. .|.++ +..|.++|.++. ..|++++.
T Consensus 164 ~~~t~~~~~~~~~qi~aGad~i~i~d~~a~~~~ls~~~f~~f~~p~~k~i~~~~~~~~~~~ilh~ 228 (330)
T cd03465 164 EKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKALGGPVIHHN 228 (330)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 99999999999999963998899835666655699999999989999999999775499836740
No 111
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=93.31 E-value=0.42 Score=28.61 Aligned_cols=162 Identities=10% Similarity=0.061 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|++.++..++-.-+.+...|.- .+.|...++..+.-..+++..++.. .+||..+.-+... ++.++.|-++|+
T Consensus 25 v~~~e~~~Avi~AAee~~sPvIlq-~~~~~~~~~g~~~~~~~~~~~a~~~--~VPV~lHLDH~~~---~e~i~~ai~~Gf 98 (284)
T PRK09195 25 IHNLETMQVVVETAAELHSPVIIA-GTPGTFSYAGTEYLLAIVSAAAKQY--HHPLALHLDHHEK---FDDIAQKVRSGV 98 (284)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEE-CCHHHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 788999999999999959998999-8851664479899999999999877--9988996698799---999999997499
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCC------EEEECHH---HC--CCCCCHHHHHHHHHH---------
Q ss_conf 43200123433431788999999987530---2330------1210011---11--121110689997432---------
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPI------YIYNNPS---RT--VIEMDVDTMAELAAT--------- 154 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi------~iYn~P~---~~--g~~~~~~~l~~L~~~--------- 154 (292)
+-||+-.-. .+-++=++.-+++.+.+ ++++ +-..... .. ...-+|+...+..++
T Consensus 99 tSVM~DgS~---l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 175 (284)
T PRK09195 99 RSVMIDGSH---LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEKDALYTDPAQAREFVEATGIDSLAVA 175 (284)
T ss_pred CEEEEECCC---CCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 868863898---99999999999999999872881899740015657787766632356899999999997599889865
Q ss_pred CCHHHHHHCC--CCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 0302331001--221135899997359840320132
Q gi|254780276|r 155 YPNIVGVKDA--TGKIELVSEQRLSCGFDFIQLSGE 188 (292)
Q Consensus 155 ~pni~giK~~--~~~~~~~~~~~~~~~~~~~v~~G~ 188 (292)
+.|+-|+-.. .-|++++.++.+..+-++.+-.|+
T Consensus 176 iGt~HG~yk~~p~L~~~~L~~I~~~~~vPLVLHGgS 211 (284)
T PRK09195 176 IGTAHGMYKSAPKLDFDRLENIRQWVNIPLVLHGAS 211 (284)
T ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCC
T ss_conf 065455558988459999999999749998987899
No 112
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=93.31 E-value=0.4 Score=28.77 Aligned_cols=33 Identities=21% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 43003674-1027899997534321024432001
Q gi|254780276|r 71 VPVMAGIG-SNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 71 ~pii~gv~-~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
.|..++.- ..+-+.+.++.++|+++|+.++.+.
T Consensus 118 ~~~wfQLY~~~dr~~~~~li~RA~~aG~~alvlT 151 (344)
T cd02922 118 QPLFFQLYVNKDRTKTEELLKRAEKLGAKAIFLT 151 (344)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8669998247767999999999998699889995
No 113
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=93.30 E-value=0.38 Score=28.94 Aligned_cols=194 Identities=11% Similarity=0.083 Sum_probs=106.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|++.++..++-.-+.+...|. .-+.+.......+.-..+++..++.+ ++||..+.-+... .+.++.|-++|+
T Consensus 25 v~n~e~~~Avi~AAee~~sPvIl-q~s~~~~~~~g~~~~~~~~~~~a~~~--~VPV~lHLDH~~~---~e~i~~ai~~Gf 98 (283)
T PRK07998 25 TTNLETTISILNAIERSGLPNFI-QIAPTNAQLSGYDYIYEIVKRHADKM--DVPVSLHLDHGKT---FEDVKQAVRAGF 98 (283)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEE-ECCHHHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 89999999999999997869899-97750675559999999999999986--9989997588899---999999997399
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHH---HHCCCC----E-E--EECHHH--CCCCCCHHHHHHHHH---------HCC
Q ss_conf 432001234334317889999999875---302330----1-2--100111--112111068999743---------203
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIAT---TVSSPI----Y-I--YNNPSR--TVIEMDVDTMAELAA---------TYP 156 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~---~~~~pi----~-i--Yn~P~~--~g~~~~~~~l~~L~~---------~~p 156 (292)
+-||+-.- ..+-++=++.-+++.+ +.+.++ - + ..--.. ....-+|+...+..+ .+.
T Consensus 99 tSVM~DgS---~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~i~G~ed~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiG 175 (283)
T PRK07998 99 TSVMIDGA---ALPFEENIAFTQEAVDFCKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKTFVERTGCDMLAVSIG 175 (283)
T ss_pred CEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
T ss_conf 88986099---899999999999999999776997999853535754777775203899999999999868899964046
Q ss_pred HHHHHHCC-CCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02331001-2211358999973598403201322100124320334455222232110024444431
Q gi|254780276|r 157 NIVGVKDA-TGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAM 222 (292)
Q Consensus 157 ni~giK~~-~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~ 222 (292)
|+-|+|.. .-|++++.++.+..+-.+.+-.|+ +.-.+.+.......+ .=-|+..++-..+.+.+
T Consensus 176 t~HG~~~~p~l~~~~l~~I~~~~~iPLVLHGgS-Gi~~e~i~~ai~~Gi-~KiNi~Tel~~a~~~~~ 240 (283)
T PRK07998 176 NVHGLDDIPRIDIPLLKRIAEVSPVPLVIHGGS-GIPPDILRSFVNYRV-AKVNIASDLRKAFITTV 240 (283)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC-CCCHHHHHHHHHCCC-EEEEECHHHHHHHHHHH
T ss_conf 645678788638999999886479878986999-999999999998698-69995868999999999
No 114
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=93.22 E-value=0.85 Score=26.42 Aligned_cols=163 Identities=17% Similarity=0.125 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999999769989998672325010899999998654-----31101234430036741027899997534321
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~ 94 (292)
|.+...++++.+++.+++|+.+.....+.. .+...++.+. ..+........+..|+..+..-....+++..+
T Consensus 40 ~~~~e~~~i~~l~~~~vdgiI~~p~~~~~~---~~~i~~~~~~~iPvV~id~~~~~~~~~~~V~~d~~~~g~~a~~~l~~ 116 (268)
T cd06323 40 DAAKQLNDIEDLITRGVDAIIINPTDSDAV---VPAVKAANEAGIPVFTIDREANGGEVVSQIASDNVAGGKMAAEYLVK 116 (268)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCC---HHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 999999999999964999899756542124---69999999769968996366678886618985379999999999999
Q ss_pred C--CCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHH-
Q ss_conf 0--244320012-3433431788999999987530-2330121001111121110689997432030233100122113-
Q gi|254780276|r 95 I--GADALLVVI-PYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIE- 169 (292)
Q Consensus 95 ~--Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~- 169 (292)
. |-..+.... +.-...+ .+-.+-|++..+.. +.++...+.... ...-..+...++.+.+|++.+| .+..|..
T Consensus 117 ~~~~~~~i~~~~g~~~~~~~-~~R~~gf~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~lL~~~~~~~aI-~~~nD~~A 193 (268)
T cd06323 117 LLGGKGKVVELQGIPGASAA-RERGKGFHEVVDKYPGLKVVASQPADF-DRAKGLNVMENILQAHPDIKGV-FAQNDEMA 193 (268)
T ss_pred HCCCCCEEEEECCCCCCHHH-HHHHHHHHHHHHHCCCCEEEEEECCCH-HHHHHHHHHHHHHHCCCCCCEE-EECCCHHH
T ss_conf 72898269996389998589-999999999998779955887722420-2799999999998629888589-97783999
Q ss_pred --HHHHHHHHCCCCEEECCCCC
Q ss_conf --58999973598403201322
Q gi|254780276|r 170 --LVSEQRLSCGFDFIQLSGED 189 (292)
Q Consensus 170 --~~~~~~~~~~~~~~v~~G~~ 189 (292)
.+..+...-+.++.+ .|.|
T Consensus 194 ~ga~~al~~~g~~di~v-iGfD 214 (268)
T cd06323 194 LGAIEALKAAGKDDVKV-VGFD 214 (268)
T ss_pred HHHHHHHHHHCCCCEEE-EEEC
T ss_conf 99999999709998299-9888
No 115
>PRK13137 consensus
Probab=93.18 E-value=0.86 Score=26.39 Aligned_cols=182 Identities=12% Similarity=0.132 Sum_probs=99.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 389888689999999999997699899986723----2501------------089999999865431101234430036
Q gi|254780276|r 13 FTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMAG 76 (292)
Q Consensus 13 f~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~g 76 (292)
|---|.-|.+...+.++.+. .|+|-|=++=-. .+++ -.|.+.-.++++.+.+. .++|++.=
T Consensus 30 yitaG~P~~~~s~~~~~~l~-~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~--~~~PivlM 106 (266)
T PRK13137 30 FLTAGYPSAAGFLQVAEELL-AYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRAL--TDTPLVIM 106 (266)
T ss_pred EECCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCCCEEEE
T ss_conf 86681888789999999997-3899899789988856657999999999997798677899999975556--89878999
Q ss_pred CCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHH
Q ss_conf 741027--899997534321024432001234334317889999999875302330121001111121110689997432
Q gi|254780276|r 77 IGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAAT 154 (292)
Q Consensus 77 v~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~ 154 (292)
.--+.. ...-++++.|+++|+||+++.= +..++ ..-|.+.|+..++.++.-=.|. -+.+-+.++++.
T Consensus 107 ~Y~N~i~~yG~e~F~~~a~~aGvdGlIipD-----LP~eE-~~~~~~~~~~~gi~~I~lvaPt-----T~~eRi~~i~~~ 175 (266)
T PRK13137 107 TYLNPIYAVGPEEFMRLFQEAGVDGLILPD-----LPPDQ-DPEIADLAAEIGLAVTFLIAPT-----STPERVKLVARA 175 (266)
T ss_pred ECHHHHHHHCHHHHHHHHHHCCCCEEEECC-----CCHHH-HHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHH
T ss_conf 345899875899999999976960999479-----99788-8999999987599789993799-----999999999960
Q ss_pred CCHHH---------HHHCCCC--CHH-HHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 03023---------3100122--113-589999735984032013-221001243203344552222
Q gi|254780276|r 155 YPNIV---------GVKDATG--KIE-LVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 155 ~pni~---------giK~~~~--~~~-~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
-..++ |.|.... +.. .+.+++....-.+.+--| ....-...+...++|++.|++
T Consensus 176 a~GFiY~Vs~~GvTG~r~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~aDGvIVGSa 242 (266)
T PRK13137 176 CTGFLYAVSVTGVTGMREGLALGEVPDMLRLARQYAALPVAVGFGVKDKATAAQVAQVADGVVVGSA 242 (266)
T ss_pred CCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEEHHH
T ss_conf 8882899744676677766787999999999986389987998266988999999831999998099
No 116
>PRK13122 consensus
Probab=93.17 E-value=0.86 Score=26.38 Aligned_cols=200 Identities=8% Similarity=0.019 Sum_probs=101.5
Q ss_pred CCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHC------------CCHHHHHHHHHHHH
Q ss_conf 930011120177389888689999999999997699899986723----25010------------89999999865431
Q gi|254780276|r 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESST------------LSHEEHCRIIELCV 64 (292)
Q Consensus 1 ~~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~------------Ls~~Er~~~~~~~~ 64 (292)
|-|+.+|.+ | |.-|+ ...++.+.++|+|-+=++=-. .++.. .+.+.-.++++...
T Consensus 1 ~~K~fipyi-~-----g~pd~---~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~l~~~r 71 (242)
T PRK13122 1 MTKLFIPYI-M-----GNKDL---IENATLLSENGADIIEIGVPFSDPVADGPVIMEAGQQAIKQGITIDYIFNQLEKHG 71 (242)
T ss_pred CCEEEEEEE-C-----CCCCH---HHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHC
T ss_conf 972377762-6-----89999---99999999759999997898888666589999999999976998999999999731
Q ss_pred HCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCC
Q ss_conf 1012344300367410278--99997534321024432001-23433431788999999987530233012100111112
Q gi|254780276|r 65 KTVASRVPVMAGIGSNNTR--ESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVI 141 (292)
Q Consensus 65 ~~~~~r~pii~gv~~~~~~--~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~ 141 (292)
+.. ++|++.=.--+... ..-++++.|+++|+||+++. .| .++- ..|++.+..-++..+..=.|.
T Consensus 72 ~~~--~~pivlM~Y~N~i~~~G~~~F~~~~~~~GvdGvIipDLP------~ee~-~~~~~~~~~~gi~~I~lvaPt---- 138 (242)
T PRK13122 72 DQI--KCNYVLMTYYNIICHYGEQAFFEKCRDTGVYGLIIPDLP------YELS-QRLKQQFSHYGVKIISLVAMT---- 138 (242)
T ss_pred CCC--CCCEEEEEECHHHHHHCHHHHHHHHHHCCCCEEECCCCC------HHHH-HHHHHHHHHCCCCEEEEECCC----
T ss_conf 367--987799985169887279999999987699867778998------7889-999999986798689871899----
Q ss_pred CCCHHHHHHHHHHCCHHHH---------HHCCC-CCHH-HHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCC
Q ss_conf 1110689997432030233---------10012-2113-589999735984032013-2210012432033445522223
Q gi|254780276|r 142 EMDVDTMAELAATYPNIVG---------VKDAT-GKIE-LVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTAN 209 (292)
Q Consensus 142 ~~~~~~l~~L~~~~pni~g---------iK~~~-~~~~-~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n 209 (292)
-+.+-+.++++.-..+++ .+... .+.. .+.++++..+..+.+--| ....-...+..+++|++.|++
T Consensus 139 -t~~~Ri~~i~~~s~GFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~i~~~ADGvIVGSa- 216 (242)
T PRK13122 139 -TDDKRIKDIVSHAEGFIYTVTMNATTGQNGAFHPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEVADGIVIGSE- 216 (242)
T ss_pred -CCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEECHH-
T ss_conf -989999999982999669873354357655565889999999997259985871587999999999811999998489-
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHH
Q ss_conf 21100244444311788279999
Q gi|254780276|r 210 VVPRICAEFQQAMIRGDYRQALL 232 (292)
Q Consensus 210 ~~P~~~~~l~~~~~~gd~~~A~~ 232 (292)
+++.+ .++..++..+
T Consensus 217 -----ivk~i---~~~~~e~~~~ 231 (242)
T PRK13122 217 -----IVKRF---KSNTREEIIK 231 (242)
T ss_pred -----HHHHH---HHCCHHHHHH
T ss_conf -----99999---9679899999
No 117
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=93.16 E-value=0.86 Score=26.36 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC--CCHHH----HHHHHHHHHHHHCCCCEEE
Q ss_conf 41027899997534321024432001234334--31788----9999999875302330121
Q gi|254780276|r 78 GSNNTRESVELAQYAHSIGADALLVVIPYYNK--PNRRG----LLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 78 ~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~--~~~~~----i~~~~~~i~~~~~~pi~iY 133 (292)
-..-|+-+++.++..-++|||++++.-|.-.. .+.++ +..|.++|.++.+.|.++|
T Consensus 175 l~~it~~~~~~~~~qi~aGad~i~ifDs~a~~~lls~~~f~ef~~p~~~~i~~~i~~~~ilh 236 (339)
T PRK06252 175 IDFVTEACIEYAKAMLEAGADVIAIADPSASPELIGPEMFEEFVLPYLNKICKEVNGPTILH 236 (339)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99999999999999998299878971575555676999999998999999999779981888
No 118
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=93.15 E-value=0.65 Score=27.27 Aligned_cols=174 Identities=15% Similarity=0.093 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC---
Q ss_conf 999999999999769989998672325010899999998654311012344300367-4102789999753432102---
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG--- 96 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G--- 96 (292)
|.+....-+-+..+|+.-+.+.=-- ...-+......+++..-. .++.++..+ |+.+.+|++..++.|.+++
T Consensus 26 Y~s~~~~~~ai~aSgaeiVTVAlRR--~~~~~~~~~~~~l~~i~~---~~~~~LPNTAGc~taeEAVr~A~lAREl~~~~ 100 (267)
T CHL00162 26 YRNLEEAINSIEASGCEIVTVAIRR--AQNNKLNGNSSLLDGLDW---NKLWLLPNTAGCQTAEEAIRVAFLGRELAKQL 100 (267)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEEC--CCCCCCCCHHHHHHHCCC---CCEEECCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999699879999732--557788874678743370---24178566302287999999999999985301
Q ss_pred ----CCCCC--EE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC----C
Q ss_conf ----44320--01-2343343178899999998753023301210011111211106899974320302331001----2
Q gi|254780276|r 97 ----ADALL--VV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA----T 165 (292)
Q Consensus 97 ----ad~i~--v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~----~ 165 (292)
-++|= |+ -+.|..|+..+.++=-+.+.+.- --++-|-+ =++-+.+||. +..-.+-+-.+ |
T Consensus 101 g~~~tnwIKLEVi~D~~tLlPD~~etl~Aae~Lv~eG-F~VlpY~~-------dD~v~akrLe-~~Gc~avMPlgsPIGS 171 (267)
T CHL00162 101 GQEDNNFVKLEVIPDPKYLLPDPIGTLKAAEFLVRKG-FTVLPYIN-------ADPVLAKQLE-DIGCATVMPLGSPIGS 171 (267)
T ss_pred CCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC-CEEEEECC-------CCHHHHHHHH-HCCCEEEEECCCCCCC
T ss_conf 5678977999982798777988789999999999789-99989548-------9989999998-6598688634551236
Q ss_pred C----CHHHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf 2----1135899997359840320132--21001243203344552222
Q gi|254780276|r 166 G----KIELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 166 ~----~~~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~ 208 (292)
+ |...+..+++...-.+.|=.|- -......|.+|++|++..++
T Consensus 172 g~Gl~n~~~l~~i~e~~~vPvIVDAGiG~pSdAa~aMElG~DaVL~NTA 220 (267)
T CHL00162 172 GQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEASQAMELGASGVLLNTA 220 (267)
T ss_pred CCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 8875899999999964899889968989678889999746777870167
No 119
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.10 E-value=0.56 Score=27.71 Aligned_cols=172 Identities=14% Similarity=-0.024 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC-CCC
Q ss_conf 99999999999769989998672325010899999998654311012344300367-4102789999753432102-443
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG-ADA 99 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G-ad~ 99 (292)
.+.....+-+..+|..-+.+.=- -..++......+++..-. .++.++..+ |+.+.+|++..++.|.+++ -++
T Consensus 20 ~s~~~~~~ai~aSgaeivTVAlR---R~~~~~~~~~~~l~~i~~---~~~~~LPNTAGc~ta~EAvr~A~laRE~~~t~~ 93 (248)
T cd04728 20 PSPAIMKEAIEASGAEIVTVALR---RVNIGDPGGESFLDLLDK---SGYTLLPNTAGCRTAEEAVRTARLAREALGTDW 93 (248)
T ss_pred CCHHHHHHHHHHHCCCEEEEEEE---ECCCCCCCCHHHHHHHHH---CCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCE
T ss_conf 99999999999968976999986---305788885268987523---386687654011679999999999999848986
Q ss_pred CCE---ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCC--------CCH
Q ss_conf 200---123433431788999999987530233012100111112111068999743203023310012--------211
Q gi|254780276|r 100 LLV---VIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDAT--------GKI 168 (292)
Q Consensus 100 i~v---~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~--------~~~ 168 (292)
|=+ .-|.|..|+..+.++=-+.+.+.- --++-|-++ ++-+.+||. +..-.+-+-.++ .|.
T Consensus 94 IKLEVi~D~~~LlPD~~eTl~Aae~Lv~~G-F~VlpY~~~-------D~v~akrLe-~~Gc~avMPlgsPIGSg~Gl~n~ 164 (248)
T cd04728 94 IKLEVIGDDKTLLPDPIETLKAAEILVKEG-FTVLPYCTD-------DPVLAKRLE-DAGCAAVMPLGSPIGSGQGLLNP 164 (248)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHCC-CEEEEECCC-------CHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCH
T ss_conf 999981797677988689999999999889-989786788-------999999999-74953452045643479887999
Q ss_pred HHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf 35899997359840320132--21001243203344552222
Q gi|254780276|r 169 ELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 169 ~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~ 208 (292)
..+..+++..+-.+.|=.|- -......|.+|++|++..++
T Consensus 165 ~~l~~i~e~~~vPvIVDAGiG~pS~Aa~aMElG~daVL~NTA 206 (248)
T cd04728 165 YNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 206 (248)
T ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHH
T ss_conf 999999984799889847999756789998726553345468
No 120
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=93.06 E-value=0.49 Score=28.13 Aligned_cols=40 Identities=15% Similarity=0.037 Sum_probs=22.4
Q ss_pred CCCCCHHHHHHHHHHCCCCEEE---CCCCCCCHHHHHHHCCCCCC
Q ss_conf 0122113589999735984032---01322100124320334455
Q gi|254780276|r 163 DATGKIELVSEQRLSCGFDFIQ---LSGEDSSALGFNAHGGVGCI 204 (292)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v---~~G~~~~~~~~~~~G~~G~i 204 (292)
+.+.+++.+..+++..+.++.+ ++.. -.......|++|.+
T Consensus 237 d~~ltW~di~wlr~~w~~plilKGI~~~e--DA~~A~~~G~dgIi 279 (383)
T cd03332 237 GPSLTWEDLAFLREWTDLPIVLKGILHPD--DARRAVEAGVDGVV 279 (383)
T ss_pred CCCCCHHHHHHHHHHCCCCEEECCCCCHH--HHHHHHHCCCCEEE
T ss_conf 88899899999998769985323568999--99999975998899
No 121
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=93.03 E-value=0.39 Score=28.89 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|.+.++..++-.-+.+...|. ..+.|..-++..+.-..+++...+.. .+||..+.-+..+ .+.+++|-+.|+
T Consensus 25 v~n~e~~~Avi~AAee~~sPvIl-q~s~~~~~~~~~~~~~~~~~~~a~~~--~VPV~lHLDH~~~---~e~i~~ai~~Gf 98 (286)
T PRK12738 25 IHNAETIQAILEVCSEMRSPVIL-AGTPGTFKHIALEEIYALCSAYSTTY--NMPLALHLDHHES---LDDIRRKVHAGV 98 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEE-ECCHHHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 89999999999999997899899-93753776669999999999999987--9999998999999---999999997799
Q ss_pred CCCCEECC
Q ss_conf 43200123
Q gi|254780276|r 98 DALLVVIP 105 (292)
Q Consensus 98 d~i~v~~P 105 (292)
+-||+-.-
T Consensus 99 tSVM~DgS 106 (286)
T PRK12738 99 RSAMIDGS 106 (286)
T ss_pred CEEEEECC
T ss_conf 87987389
No 122
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=93.01 E-value=0.46 Score=28.38 Aligned_cols=180 Identities=12% Similarity=0.074 Sum_probs=73.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHH
Q ss_conf 120177389888689999999999997699899986723250108999999986543110123443003674-1027899
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG-SNNTRES 85 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~-~~~~~~~ 85 (292)
|..+.|.--.+-...++=....+-.-+.|+.-++. -..+.|.||-. +..++ |..++.- ..+-+.+
T Consensus 72 P~~iaP~g~~~l~hp~gE~a~ArAA~~~gi~~~lS-----t~ss~slEeva-------~a~~~--~~WfQLY~~~Dr~~~ 137 (381)
T PRK11197 72 PVALAPVGLTGMYARRGEVQAARAADAKGIPFTLS-----TVSVCPIEEVA-------PAIKR--PMWFQLYVLRDRGFM 137 (381)
T ss_pred CEEECHHHHHCCCCCCHHHHHHHHHHHHCCCEEEC-----CCCCCCHHHHH-------HHCCC--CEEEEEEECCCHHHH
T ss_conf 73467577741678975799999999707717832-----77656799998-------63589--738998413888999
Q ss_pred HHHHHHHHHCCCCCCCEE--CCCCCCCCHHHHHHHH-------HHHHHHHCCCCEEEE-----CHHHCCC----CCCHHH
Q ss_conf 997534321024432001--2343343178899999-------998753023301210-----0111112----111068
Q gi|254780276|r 86 VELAQYAHSIGADALLVV--IPYYNKPNRRGLLAHF-------GEIATTVSSPIYIYN-----NPSRTVI----EMDVDT 147 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~--~P~~~~~~~~~i~~~~-------~~i~~~~~~pi~iYn-----~P~~~g~----~~~~~~ 147 (292)
.++.++|+++|+.++++. .|..-+ .+.++...| +.+.+....|-+..+ .|...+. .-....
T Consensus 138 ~~ll~RA~~aG~~alvlTVD~pv~g~-R~rd~rn~~~~p~~~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~ 216 (381)
T PRK11197 138 RNALERAKAAGCSTLVFTVDMPVPGA-RYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTG 216 (381)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCC-CHHHHCCCCCCCCCHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999999849987998078887786-65543067778981287899886481787763344788654431001377655
Q ss_pred HHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCC
Q ss_conf 99974320302331001221135899997359840320132--21001243203344552
Q gi|254780276|r 148 MAELAATYPNIVGVKDATGKIELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCIS 205 (292)
Q Consensus 148 l~~L~~~~pni~giK~~~~~~~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is 205 (292)
...... .+..--+.+.+++.+..+++..+.++.+ =|- .+-.......|++|.+.
T Consensus 217 ~~~~~~---~~~~~~d~~ltW~di~wlr~~w~~plvl-KGIl~~eDA~~A~~~G~dgIiV 272 (381)
T PRK11197 217 LEDYIG---WLGNNFDPSISWKDLEWIREFWDGPMVI-KGILDPEDARDAVRFGADGIVV 272 (381)
T ss_pred HHHHHH---HHHHCCCCCCCHHHHHHHHHHCCCCEEE-ECCCCHHHHHHHHHCCCCEEEE
T ss_conf 888999---9875058889999999999872997678-5258899999999669988999
No 123
>PRK08318 dihydropyrimidine dehydrogenase; Validated
Probab=92.98 E-value=0.54 Score=27.85 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=9.9
Q ss_pred HHHHHHHHCCCCEEEECCCCC
Q ss_conf 999999976998999867232
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTG 46 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tG 46 (292)
..++++.+.|.-+++ ..|.+
T Consensus 29 ~~i~~~~~aG~GaVV-~KTl~ 48 (413)
T PRK08318 29 YNVARAFEAGWGGVV-WKTLG 48 (413)
T ss_pred HHHHHHHHCCCEEEE-ECCCC
T ss_conf 999999876953999-05078
No 124
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=92.96 E-value=0.67 Score=27.18 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 86899999999999976998999867232501089-99999986543110123443003674102789999753432102
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLS-HEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls-~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~G 96 (292)
-.|.+.++..++-.-+.+...|.- -+.|...+++ .+....+++..++..+-.+||..+.-+..+ .+.++.|-+.|
T Consensus 25 v~n~e~~~Avi~AAee~~sPvIlq-~s~~~~~~~~g~~~~~~~~~~~~~~~~~~VPV~lHLDH~~~---~e~i~~ai~~G 100 (285)
T PRK07709 25 MNNLEWTQAILAAAEEEKSPVILG-VSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSS---FEKCKEAIDAG 100 (285)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEE-CCCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---HHHHHHHHHCC
T ss_conf 899999999999999978899999-37458876567789999999999983899988988999999---99999999729
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEE----ECHHH------CC-CCCCHHHHHHHHH---------HC
Q ss_conf 4432001234334317889999999875302-330121----00111------11-2111068999743---------20
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVS-SPIYIY----NNPSR------TV-IEMDVDTMAELAA---------TY 155 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~-~pi~iY----n~P~~------~g-~~~~~~~l~~L~~---------~~ 155 (292)
++-||+-.-. .+-++=++--+++.+.+. ..+.+= ..+.. .+ ..-+|+...+..+ .+
T Consensus 101 f~SVM~D~S~---l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvai 177 (285)
T PRK07709 101 FTSVMIDASH---HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPAL 177 (285)
T ss_pred CCEEEECCCC---CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEHHH
T ss_conf 9779852998---9999999999999999987498399972323675677677555157999999999731878884220
Q ss_pred CHHHHHHCCC--CCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHCC-CCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 3023310012--21135899997359840320132210012432033-4455222232110024444431
Q gi|254780276|r 156 PNIVGVKDAT--GKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHGG-VGCISVTANVVPRICAEFQQAM 222 (292)
Q Consensus 156 pni~giK~~~--~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~-~G~is~~~n~~P~~~~~l~~~~ 222 (292)
.|+-|.-... -|++++.++....+-.+.+-.|+ +.-.+.+..-. .|. .=-|+..++-..+.+.+
T Consensus 178 Gn~HG~yk~~p~l~~~~l~~i~~~~~vPLVLHGgS-G~~~e~i~~ai~~Gv--~KiNi~T~l~~a~~~~~ 244 (285)
T PRK07709 178 GSVHGPYKGEPNLGFAEMEQVRDFTGVPLVLHGGT-GIPTADIEKAISLGT--SKINVNTENQIEFTKAV 244 (285)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHCCC--EEEEECHHHHHHHHHHH
T ss_conf 55557768988766999999984059987964999-999999999998598--59998828899999999
No 125
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.96 E-value=0.43 Score=28.56 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCCEEEECCCC
Q ss_conf 99999997699899986723
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTT 45 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~t 45 (292)
..++.+.+-|...+-+...|
T Consensus 63 ~~~~~~~~lGfGfvevGTVT 82 (327)
T cd04738 63 EAIDALLALGFGFVEVGTVT 82 (327)
T ss_pred HHHHHHHHCCCCEEEECCCC
T ss_conf 89999996698679971436
No 126
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.93 E-value=0.93 Score=26.13 Aligned_cols=124 Identities=23% Similarity=0.283 Sum_probs=67.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC------------------CCHHHHHHHHHHHHHHHCCCC--EEEE
Q ss_conf 36741027899997534321024432001234334------------------317889999999875302330--1210
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNK------------------PNRRGLLAHFGEIATTVSSPI--YIYN 134 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~------------------~~~~~i~~~~~~i~~~~~~pi--~iYn 134 (292)
.-+|.++.+.+.+.++...+.|+|.+-+.-||--+ .+-+.+++..+++.+..+.|+ |-|-
T Consensus 15 ~taG~P~~e~~~~~~~~l~~~Gad~iEiGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~f~~~~~~r~~~~~pivlM~Y~ 94 (256)
T PRK13111 15 ITAGDPDLETSLEILKALVEAGADIIELGIPFSDPVADGPVIQRASLRALAAGVTLADVLELLREIRAKPTIPIVLMTYY 94 (256)
T ss_pred EECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 70708998999999999996599999978887887665799999999999779969999999999860689988998503
Q ss_pred CHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH-----HHHHHHHHHCCCCEEECCC--CCCCHHHHHHHCCCCCC
Q ss_conf 0111112111068999743203023310012211-----3589999735984032013--22100124320334455
Q gi|254780276|r 135 NPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI-----ELVSEQRLSCGFDFIQLSG--EDSSALGFNAHGGVGCI 204 (292)
Q Consensus 135 ~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~-----~~~~~~~~~~~~~~~v~~G--~~~~~~~~~~~G~~G~i 204 (292)
||.. .+-.+-+.+.+++. .+-|+=- +|+ ..+.+..+..+-++..+.. ....-+.....-+.||+
T Consensus 95 N~i~---~~G~e~F~~~~~~~-GvdGvIi--pDLP~eE~~~~~~~~~~~gi~~I~lvaPtt~~~Ri~~i~~~s~gfi 165 (256)
T PRK13111 95 NPIF---QYGVEAFAADAAEA-GVDGLII--PDLPPEEAEEFRAAAKKHGIDLIFLVAPTTTDERLKKIASHASGFV 165 (256)
T ss_pred CHHH---HHCHHHHHHHHHHC-CCCEEEE--CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 0898---70999999999975-9977981--6999788899999999759808999699998899999996269859
No 127
>PRK00208 thiG thiazole synthase; Reviewed
Probab=92.91 E-value=0.61 Score=27.46 Aligned_cols=171 Identities=14% Similarity=-0.028 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 9999999999769989998672325010899999998654311012344300367-4102789999753432102-4432
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG-ADAL 100 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G-ad~i 100 (292)
+....-+-+..+|..-+.+.=-- ..++......+++... ..++.++..+ |+.+.+|++..++.|.+++ -++|
T Consensus 22 s~~~~~~ai~aSg~eivTVAlRR---~~~~~~~~~~~l~~i~---~~~~~lLPNTAGc~ta~EAVr~A~laRE~~~tnwI 95 (256)
T PRK00208 22 SPEVMQEAIEASGAEIVTVALRR---VNLGDPGGDNLLDLLD---PLGVTLLPNTAGCRTAEEAVRTARLAREALGTDWI 95 (256)
T ss_pred CHHHHHHHHHHHCCCEEEEEEEE---ECCCCCCCHHHHHHHC---CCCCEECCCCCCCCCHHHHHHHHHHHHHHHCCCEE
T ss_conf 99999999999689779999864---2477898505888743---15856766640326799999999999998489869
Q ss_pred CE---ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCC--------CCHH
Q ss_conf 00---123433431788999999987530233012100111112111068999743203023310012--------2113
Q gi|254780276|r 101 LV---VIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDAT--------GKIE 169 (292)
Q Consensus 101 ~v---~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~--------~~~~ 169 (292)
=+ .-+.|..|+..+.++=-+.+.+.- --++-|-++ ++-+.+||. +..-.+-+-.++ .|..
T Consensus 96 KLEVi~D~~~LlPD~~etl~Aae~Lv~eG-F~VlpY~~~-------D~v~akrLe-~~Gc~avMPlgsPIGSg~Gl~n~~ 166 (256)
T PRK00208 96 KLEVIGDDKTLLPDPIETLKAAEILVKEG-FVVLPYCTD-------DPVLAKRLE-EAGCAAVMPLGAPIGSGLGLLNPY 166 (256)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHCC-CEEEEECCC-------CHHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHH
T ss_conf 99981797677988689999999999889-989786788-------989999999-749534520456434798879999
Q ss_pred HHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf 5899997359840320132--21001243203344552222
Q gi|254780276|r 170 LVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 170 ~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~ 208 (292)
.+..+++..+-.+.+=.|- -......|.+|++|++..++
T Consensus 167 ~l~~i~e~~~vPvIVDAGiG~pS~Aa~AMElG~DaVL~NTA 207 (256)
T PRK00208 167 NLRIIIEQADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 207 (256)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHH
T ss_conf 99999986799889857889766789998625543235568
No 128
>PRK13138 consensus
Probab=92.89 E-value=0.94 Score=26.10 Aligned_cols=187 Identities=14% Similarity=0.136 Sum_probs=103.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC----CCCHHCC------------CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 7738988868999999999999769989998672----3250108------------99999998654311012344300
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGT----TGESSTL------------SHEEHCRIIELCVKTVASRVPVM 74 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~----tGE~~~L------------s~~Er~~~~~~~~~~~~~r~pii 74 (292)
-||---|.-|.+...+.++-+.++|++-+=++=- ..++... +.+.-.++++.+.+ ...++|++
T Consensus 16 I~yitaG~P~~e~t~~~~~~l~~~GadiiEiGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~-~~~~~piv 94 (264)
T PRK13138 16 IPYISLGDPDYDSCIIWADALIRGGAGILELGIPFSDPVADGPVIQKAFKRALAHPFSMDKILEITAEIHK-LHPEIPLV 94 (264)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC-CCCCCCEE
T ss_conf 88867879998999999999997799989979988886665899999999999779908897446776033-58988889
Q ss_pred CCCCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHH
Q ss_conf 36741027--899997534321024432001-234334317889999999875302330121001111121110689997
Q gi|254780276|r 75 AGIGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAEL 151 (292)
Q Consensus 75 ~gv~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L 151 (292)
.=.--+.. ...-++++.|+++|+||+++. .|+ ..++-.+|+.. ++.-++..+..=.|. -+.+-+.++
T Consensus 95 lM~Y~N~i~~~G~e~F~~~~~~~GvdGlIipDLP~----e~~E~~~~~~~-~~~~~i~~I~liaPt-----t~~~Ri~~i 164 (264)
T PRK13138 95 YLTYFNPLFSMGLEAFTERAKNSGIQGLIIPDLPF----DTPEAEEFFSQ-LERKKIDFIHLVTPA-----TTEDRIQSM 164 (264)
T ss_pred EEEEHHHHHHHCHHHHHHHHHHCCCCEEECCCCCC----CCHHHHHHHHH-HHHCCCCEEEECCCC-----CCHHHHHHH
T ss_conf 75212389884899999999876977585368986----50335999999-998699867521799-----989999999
Q ss_pred HHHCCHHHHH---HCCCC-------CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 4320302331---00122-------11-3589999735984032013-221001243203344552222
Q gi|254780276|r 152 AATYPNIVGV---KDATG-------KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 152 ~~~~pni~gi---K~~~~-------~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
++.-..+++. +=.+| +. ..+.++++...-.+.+--| ....-...+..+++|.+.|++
T Consensus 165 ~~~s~gFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSa 233 (264)
T PRK13138 165 KSFASGFIYYVTSYGVTGERGAIASGLEDRIQMVRKIVGLPVCAGFGISTADQAKEISTYADGVIIGSA 233 (264)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEECHH
T ss_conf 973888089875456678765553769999999997438983886067989999999834999998199
No 129
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.85 E-value=0.95 Score=26.06 Aligned_cols=193 Identities=13% Similarity=0.066 Sum_probs=105.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC------CCCC--CHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 888689999999999997699899986------7232--50108999999986543110123443003674102789999
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPA------GTTG--ESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVE 87 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~------G~tG--E~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~ 87 (292)
+-++..+...++++.|.+.||+-|=+. |++- -+...+..|+.+.+...++.++-.+-++.|++. . +
T Consensus 18 ~~~fs~e~k~~ia~~Ld~aGVd~IEvg~g~g~~~ss~~~g~~~~~d~e~i~~~~~~~~~ak~~~l~~pg~~~--~----~ 91 (333)
T TIGR03217 18 RHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT--V----H 91 (333)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC--H----H
T ss_conf 999899999999999997198989960688888874335788899499999999874248056996478666--9----9
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHH---C-CHHHHHHC
Q ss_conf 7534321024432001234334317889999999875302330121001111121110689997432---0-30233100
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAAT---Y-PNIVGVKD 163 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~---~-pni~giK~ 163 (292)
..+.+.+.|++.+-+... .++.++..-+-+.+....+.+..+- . .....+++.+.+.++. . .+.++++|
T Consensus 92 dl~~a~~~gv~~vri~~~----~te~d~~~~~i~~ak~~G~~v~~~~--~-~s~~~~~e~l~~~a~~~~~~Gad~I~i~D 164 (333)
T TIGR03217 92 DLKAAYDAGARTVRVATH----CTEADVSEQHIGMARELGMDTVGFL--M-MSHMTPPEKLAEQAKLMESYGADCVYIVD 164 (333)
T ss_pred HHHHHHHCCCCEEEEEEC----CCHHHHHHHHHHHHHHCCCEEEEEE--E-ECCCCCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 999999669997898631----6678889999999997698099997--5-05689999999999999856999999759
Q ss_pred CCCCH--HHH----HHHHHHCCCCEEE-CCCCCCC------HHHHHHHCC---CCCCCCC----CCCCCCHHHHHHHH
Q ss_conf 12211--358----9999735984032-0132210------012432033---4455222----23211002444443
Q gi|254780276|r 164 ATGKI--ELV----SEQRLSCGFDFIQ-LSGEDSS------ALGFNAHGG---VGCISVT----ANVVPRICAEFQQA 221 (292)
Q Consensus 164 ~~~~~--~~~----~~~~~~~~~~~~v-~~G~~~~------~~~~~~~G~---~G~is~~----~n~~P~~~~~l~~~ 221 (292)
+.|-+ ..+ ..+++..++++.+ |-+++.. -+.++..|+ ++.+.|+ ||.--|..+...+.
T Consensus 165 T~G~~~P~~v~~~v~~l~~~~~~~i~ig~H~HNnlGlAvANslaAi~aGa~~VD~Ti~GlGe~aGNa~lE~lVa~l~~ 242 (333)
T TIGR03217 165 SAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNAPLEVFVAVLDR 242 (333)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 644689999999999999862997548898617877299999999981999997627448898887349999999961
No 130
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.83 E-value=0.96 Score=26.04 Aligned_cols=210 Identities=18% Similarity=0.156 Sum_probs=106.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHCCCHH---------HHHHHHHHHHHCCCCCCCCCC-C
Q ss_conf 77389888689999999999997699899986723----250108999---------999986543110123443003-6
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESSTLSHE---------EHCRIIELCVKTVASRVPVMA-G 76 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~Ls~~---------Er~~~~~~~~~~~~~r~pii~-g 76 (292)
-||---|--|.+...+.++.+.+ ++|-|=++=-. .++...-.. .-.++++.+.+. ..+|++. +
T Consensus 8 i~yitaG~P~~e~s~~~l~~l~~-~aDiiElGiPfSDPvADGpvIq~A~~~Al~~g~~~~~i~~~~r~~--~~~pivlM~ 84 (247)
T PRK13125 8 GVYLTAGWPNAETFLEAIDGLVG-LVDFLELGIPPKNPKYDGPVIRKAHREVSYWGLDYWSLLEEVRKK--VGVPTYIMT 84 (247)
T ss_pred EEEEECCCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCC--CCCCEEEHH
T ss_conf 88871837998999999999864-799999799889876660999999999987699899999985056--899889729
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf 741027899997534321024432001-2343343178899999998753023301210011111211106899974320
Q gi|254780276|r 77 IGSNNTRESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY 155 (292)
Q Consensus 77 v~~~~~~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~ 155 (292)
--..-....-++.+.|+++|+||+++. .|+-+ .++. +-|.+.+...++..+..=.|. -+.+.+.++++..
T Consensus 85 Y~N~~~~g~e~F~~~~~~~GvdGvIipDLP~e~---~ee~-~~~~~~~~~~gl~~I~lvsPt-----t~~~ri~~i~~~s 155 (247)
T PRK13125 85 YLEDYVGSLDDLLNTAKEVGARGVLFPDLLIDF---PDEL-EKYVELIRRYGLAPVFFTSPK-----FPDRLIRRLSKLS 155 (247)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC---HHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHHC
T ss_conf 889999769999999998599758833888754---6789-999999997698469995799-----8199999999868
Q ss_pred CHHHHH--HCCCC-----CHH-HHHHHHHHCCCCEEECCCCCC----CHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHC
Q ss_conf 302331--00122-----113-589999735984032013221----001243203344552222321100244444311
Q gi|254780276|r 156 PNIVGV--KDATG-----KIE-LVSEQRLSCGFDFIQLSGEDS----SALGFNAHGGVGCISVTANVVPRICAEFQQAMI 223 (292)
Q Consensus 156 pni~gi--K~~~~-----~~~-~~~~~~~~~~~~~~v~~G~~~----~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~ 223 (292)
..++++ +-.+| +.. .+.++++..+ +.-+..|.+- ..-..+..|++|++.|++- ++. +.
T Consensus 156 ~gFvY~~~~gvTG~~~~~~~~~~i~~ik~~~~-~~Pv~vGFGI~t~e~v~~~~~~~aDGvIVGSai------Vk~---i~ 225 (247)
T PRK13125 156 PLFIYLGLYPATGVELPVYVERNIKRVRELVG-DVYLVAGFAIDSPEDAAKALSAGADGVVVGTAF------IRR---LE 225 (247)
T ss_pred CCEEEEEEECCCCCCCCCCHHHHHHHHHHHCC-CCCEEEECCCCCHHHHHHHHHCCCCEEEECHHH------HHH---HH
T ss_conf 97799994436788773259999999998569-998588328799999999985589999987899------999---99
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7882799999999999999984
Q gi|254780276|r 224 RGDYRQALLYQDKLMPLHQALF 245 (292)
Q Consensus 224 ~gd~~~A~~l~~~l~~l~~~~~ 245 (292)
++..++..+ .+..+..++.
T Consensus 226 ~~~~~~~~~---~v~~l~~al~ 244 (247)
T PRK13125 226 RNGVEEALS---LLKEIRGALD 244 (247)
T ss_pred HCCHHHHHH---HHHHHHHHHH
T ss_conf 769899999---9999999985
No 131
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=92.83 E-value=0.63 Score=27.38 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC------CCCCHHHHHHHHHHHHHHHCCCCEEEECHH
Q ss_conf 3443003674102789999753432102443200--12343------343178899999998753023301210011
Q gi|254780276|r 69 SRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY------NKPNRRGLLAHFGEIATTVSSPIYIYNNPS 137 (292)
Q Consensus 69 ~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~------~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~ 137 (292)
..+|+++.+++.+.+|-.+.++..++.|+|++-+ ..|.- +..+.+.+.+..+.+.+++++||++==-|.
T Consensus 88 ~~~pvi~si~~~~~~d~~~~~~~~~~~gad~ielNiScPNt~~~g~~~~~~~~~~~~i~~~vk~~~~~Pi~vKlsP~ 164 (296)
T cd04740 88 FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN 164 (296)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 89718998168987899999999886489889997889986763677574999999999999860489669971898
No 132
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=92.83 E-value=0.58 Score=27.60 Aligned_cols=160 Identities=12% Similarity=0.072 Sum_probs=92.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+.++..++-.-+.+...|.- -+.+...++..+.-..+++..++.. .+||..+.-+... .+.++.|-++|++
T Consensus 21 ~~~e~~~avi~AAee~~sPvIlq-~s~~~~~~~g~~~~~~~~~~~a~~~--~VPV~lHLDH~~~---~e~i~~ai~~Gf~ 94 (276)
T cd00947 21 NNLETLKAILEAAEETRSPVILQ-ISEGAIKYAGLELLVAMVKAAAERA--SVPVALHLDHGSS---FELIKRAIRAGFS 94 (276)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEE-CCHHHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCCC
T ss_conf 98999999999999968999999-7861776589999999999999977--9999996687678---9999999983998
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHH---CCC------CEEEEC--H-HHCCCCCCHHHHHHHHHH---------CCH
Q ss_conf 3200123433431788999999987530---233------012100--1-111121110689997432---------030
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTV---SSP------IYIYNN--P-SRTVIEMDVDTMAELAAT---------YPN 157 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~p------i~iYn~--P-~~~g~~~~~~~l~~L~~~---------~pn 157 (292)
-||+-.- ..+-++=++--+++.+.+ +++ .+-+.. . ......-+|+..++..++ +.|
T Consensus 95 SVM~DgS---~lp~eeNi~~T~~vv~~ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn 171 (276)
T cd00947 95 SVMIDGS---HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGT 171 (276)
T ss_pred EEEEECC---CCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 7985289---8999999999999999999819848998640467567766653334899999999998598878764164
Q ss_pred HHHH-HC--CCCCHHHHHHHHHHCCCCEEECCC
Q ss_conf 2331-00--122113589999735984032013
Q gi|254780276|r 158 IVGV-KD--ATGKIELVSEQRLSCGFDFIQLSG 187 (292)
Q Consensus 158 i~gi-K~--~~~~~~~~~~~~~~~~~~~~v~~G 187 (292)
+-|+ |. ..-|++++.++.+..+-.+.+-.|
T Consensus 172 ~HG~yk~~~p~L~~~~L~~I~~~~~vPLVlHGg 204 (276)
T cd00947 172 SHGAYKGGEPKLDFDRLKEIAERVNVPLVLHGG 204 (276)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf 344568999864889999999973998797579
No 133
>PRK12857 putative aldolase; Reviewed
Probab=92.78 E-value=0.47 Score=28.29 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.|.+.++..++-.-+.+...|.- -+.|..-++..+.-..+++..++.. .+||..+.-+... .+.++.|-++|++
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq-~s~~~~~~~g~~~~~~~~~~~a~~~--~VpV~lHLDH~~~---~e~i~~ai~~Gf~ 99 (284)
T PRK12857 26 NNMEIVQAIVAAAEAERSPVIIQ-ASQGAIKYAGIEYISAMVRTAAEKA--SVPVALHLDHGTD---FEQVMKCIRNGFT 99 (284)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEE-CCCCHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCCC
T ss_conf 98999999999999978998999-1714776579999999999999976--9989996798899---9999999980998
Q ss_pred CCCEECC
Q ss_conf 3200123
Q gi|254780276|r 99 ALLVVIP 105 (292)
Q Consensus 99 ~i~v~~P 105 (292)
.||+-.-
T Consensus 100 SVM~DgS 106 (284)
T PRK12857 100 SVMIDGS 106 (284)
T ss_pred EEEEECC
T ss_conf 7997289
No 134
>PRK06801 hypothetical protein; Provisional
Probab=92.77 E-value=0.48 Score=28.22 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|.+.++..++-.-+.+...|.- -+.|..-+++.+....+++..++.+ .+||..+.-+... .+.+++|-++|+
T Consensus 25 v~n~e~~~avi~AAee~~sPvIlq-~s~~~~~~~~~~~~~~~~~~~a~~~--~VPV~lHLDHg~~---~e~i~~ai~~Gf 98 (286)
T PRK06801 25 VLDSHFLRALFAAAKQERSPFIIN-IAEVHFKYISLESLVEAVKFEAAHH--DIPVVLNLDHGLH---FEAVVRALRLGF 98 (286)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEE-CCHHHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 899999999999999978798998-0675775669999999999999877--9989998999999---999999998299
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCE--EEECHHH----------CCCCCCHHHHHHHHHH--------
Q ss_conf 43200123433431788999999987530---23301--2100111----------1121110689997432--------
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIY--IYNNPSR----------TVIEMDVDTMAELAAT-------- 154 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~--iYn~P~~----------~g~~~~~~~l~~L~~~-------- 154 (292)
+-||+-.- ..+-++=++.-+++.+.+ ++++= +=..+.. ....-+|+..++..++
T Consensus 99 ~SVM~DgS---~l~~eeNi~~Tk~vve~ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAv 175 (286)
T PRK06801 99 SSVMFDGS---TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSNLFTDPAIARDFVDRTGIDALAV 175 (286)
T ss_pred CEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 87997499---899999999999999999884985999963105766776557653002689999999999869989975
Q ss_pred -CCHHHHHHCC--CCCHHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -0302331001--2211358999973598403201322---100124320334455222232110024444431
Q gi|254780276|r 155 -YPNIVGVKDA--TGKIELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTANVVPRICAEFQQAM 222 (292)
Q Consensus 155 -~pni~giK~~--~~~~~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~ 222 (292)
+.|+-|+=.+ .-|++++.++.+..+-.+.+-.|++ +.+-.....|.. =-|+..++-..+.+.+
T Consensus 176 aiGn~HG~yk~~p~L~~~~L~~I~~~~~vPLVLHGgSGi~~e~i~~ai~~Gv~-----KiNi~T~l~~a~~~~~ 244 (286)
T PRK06801 176 AIGNAHGKYKGEPKLDFARLAAIHQQTGLPLVLHGGSGISDTDFRRAISLGIH-----KINFYTGMSQAALAAV 244 (286)
T ss_pred ECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCE-----EEEECHHHHHHHHHHH
T ss_conf 22545567689886799999999985299989779999999999999977976-----9982868999999999
No 135
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=92.68 E-value=0.6 Score=27.49 Aligned_cols=162 Identities=12% Similarity=0.128 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|.+.++..++-.-+.+...|. ..+.|..-+...+.-..+++..++.+ .+||..+.-+... .+.++.|-++|+
T Consensus 25 v~n~e~~~Avi~AAee~~sPvIl-q~s~~~~~~~g~~~~~~~~~~~a~~~--~VPV~lHLDH~~~---~e~~~~ai~~Gf 98 (284)
T PRK12737 25 IHNLETLQVVVETAAELRSPVIL-AGTPGTISYAGADYIIAIAEVAARKY--NIPLALHLDHHED---LDDIKKKVRAGI 98 (284)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEE-ECCHHHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 89999999999999997899899-96753887779999999999999987--9999998899999---999999998199
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCE--EEECHHH---------CCCCCCHHHHHHHHHH---------
Q ss_conf 43200123433431788999999987530---23301--2100111---------1121110689997432---------
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIY--IYNNPSR---------TVIEMDVDTMAELAAT--------- 154 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~--iYn~P~~---------~g~~~~~~~l~~L~~~--------- 154 (292)
+-||+-.- ..+-++=++.-+++.+.+ ++++= +=..+.. ....-+|+...+..++
T Consensus 99 tSVM~DgS---~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 175 (284)
T PRK12737 99 RSVMIDGS---HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVA 175 (284)
T ss_pred CEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHCCCEEEEC
T ss_conf 87987099---999999999999999986452886999631125767776666411131799999999999698987000
Q ss_pred CCHHHHHH--CCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 03023310--01221135899997359840320132
Q gi|254780276|r 155 YPNIVGVK--DATGKIELVSEQRLSCGFDFIQLSGE 188 (292)
Q Consensus 155 ~pni~giK--~~~~~~~~~~~~~~~~~~~~~v~~G~ 188 (292)
+.|+-|+- ...-|++++.++.+..+-++.+-.|+
T Consensus 176 iGt~HG~yk~~p~L~~d~L~~I~~~~~iPLVLHGgS 211 (284)
T PRK12737 176 IGTAHGLYKGEPKLDFDRLEEIREKVSIPLVLHGAS 211 (284)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 375356759998578999999998639998966899
No 136
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=92.67 E-value=1 Score=25.89 Aligned_cols=64 Identities=25% Similarity=0.400 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------------------CHHHHHHHHHHHHHHHCCCCEE--E
Q ss_conf 0367410278999975343210244320012343343------------------1788999999987530233012--1
Q gi|254780276|r 74 MAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKP------------------NRRGLLAHFGEIATTVSSPIYI--Y 133 (292)
Q Consensus 74 i~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~------------------~~~~i~~~~~~i~~~~~~pi~i--Y 133 (292)
+.-+|.++.+.+.+.++...+.|+|.+-+.-|+--+. +-+.+++..+++....+.|+++ |
T Consensus 20 y~taG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~v~~~r~~~~~PivlMtY 99 (263)
T CHL00200 20 FITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTY 99 (263)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 87073898789999999999769999997898888666589999999999977987778999999986067998899862
Q ss_pred ECHH
Q ss_conf 0011
Q gi|254780276|r 134 NNPS 137 (292)
Q Consensus 134 n~P~ 137 (292)
-||.
T Consensus 100 ~N~i 103 (263)
T CHL00200 100 YNPV 103 (263)
T ss_pred HHHH
T ss_conf 0688
No 137
>pfam05690 ThiG Thiazole biosynthesis protein ThiG. This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway.
Probab=92.64 E-value=0.62 Score=27.41 Aligned_cols=173 Identities=13% Similarity=-0.023 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC-CC
Q ss_conf 999999999999769989998672325010899999998654311012344300367-4102789999753432102-44
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG-AD 98 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G-ad 98 (292)
|.+.+...+-+..+|+.-+.+.=- -..++......+++..-. .++.++..+ |+.+.+|++..++.|.+++ -+
T Consensus 18 y~s~~~~~~ai~aSg~eivTVAlR---R~~~~~~~~~~~l~~i~~---~~~~iLPNTAGc~tA~EAVr~A~laRE~~~t~ 91 (246)
T pfam05690 18 YPSPEVLKEAIRASGAEIVTVALR---RVNAGQPGGENFLDLLDW---LGITLLPNTAGCRTAEEAVRTARLAREAFGTN 91 (246)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEEE---EECCCCCCCCHHHHHHHH---CCCEECCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 999999999999968977998986---305888884258886413---38667776301188999999999999970997
Q ss_pred CCCE--E-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC----C----CC
Q ss_conf 3200--1-2343343178899999998753023301210011111211106899974320302331001----2----21
Q gi|254780276|r 99 ALLV--V-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA----T----GK 167 (292)
Q Consensus 99 ~i~v--~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~----~----~~ 167 (292)
+|=+ + -|.|..|+..+.++=-+.+.+.- --++-|-+ =++-+.+||. +..-.+-+-.+ | .|
T Consensus 92 wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eG-F~VlpY~~-------~D~v~akrLe-d~Gc~avMPlgsPIGSg~Gl~n 162 (246)
T pfam05690 92 WIKLEVIGDSKTLLPDPIETLKAAEILVKEG-FTVLPYTT-------DDPVLARRLE-EAGCAAVMPLGAPIGSGLGLRN 162 (246)
T ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHHHCC-CEEEEECC-------CCHHHHHHHH-HCCCEEEEECCCCCCCCCCCCC
T ss_conf 4899982698877988789999999999789-98988617-------9989999998-7598498622440136888689
Q ss_pred HHHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf 135899997359840320132--21001243203344552222
Q gi|254780276|r 168 IELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 168 ~~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~ 208 (292)
...+..+++..+-.+.|=.|- -......|.+|++|++-.++
T Consensus 163 ~~~l~~i~e~~~vPvIVDAGiG~pS~Aa~aMElG~DaVLvNTA 205 (246)
T pfam05690 163 PENLRIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 205 (246)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHH
T ss_conf 9999999996799889848989678899999745677773067
No 138
>PRK08195 4-hydroxy-2-ketovalerate aldolase; Validated
Probab=92.64 E-value=0.68 Score=27.13 Aligned_cols=52 Identities=15% Similarity=0.136 Sum_probs=21.9
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH--CCCCEE
Q ss_conf 02789999753432102443200123433431788999999987530--233012
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV--SSPIYI 132 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~--~~pi~i 132 (292)
.+.+...+.++.+++.|+|.|.+.= .+-...++++.++++.+.+.. ++|+-+
T Consensus 141 ~~~e~l~~~a~~~~~~Gad~I~l~D-T~G~~~P~~v~~~v~~l~~~l~~~i~igf 194 (337)
T PRK08195 141 ASPEKLAEQAKLMESYGAQCVYVVD-SAGALLPDDVRARVRALRAALKPDTQVGF 194 (337)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 8999999999999865999999789-87667999999999999986499854999
No 139
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.63 E-value=1 Score=25.86 Aligned_cols=123 Identities=21% Similarity=0.256 Sum_probs=64.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------------------CHHHHHHHHHHHHHHHCCCC--EEEEC
Q ss_conf 67410278999975343210244320012343343------------------17889999999875302330--12100
Q gi|254780276|r 76 GIGSNNTRESVELAQYAHSIGADALLVVIPYYNKP------------------NRRGLLAHFGEIATTVSSPI--YIYNN 135 (292)
Q Consensus 76 gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~------------------~~~~i~~~~~~i~~~~~~pi--~iYn~ 135 (292)
-+|.++.+.+.+.++...+.|+|.+-+.-|+--+. +-+++++..+++.+..+.|+ |-|-|
T Consensus 7 taG~P~~~~~~~~~~~l~~~G~d~iEiGiPfsDP~aDGpvIq~A~~~aL~~g~~~~~~~~~~~~~r~~~~~pivlM~Y~N 86 (242)
T cd04724 7 TAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEECH
T ss_conf 37789979999999999976999999789988877658999999999997699499999999998734798889998445
Q ss_pred HHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH-----HHHHHHHHHCCCCEEECCC--CCCCHHHHHHHCCCCCC
Q ss_conf 111112111068999743203023310012211-----3589999735984032013--22100124320334455
Q gi|254780276|r 136 PSRTVIEMDVDTMAELAATYPNIVGVKDATGKI-----ELVSEQRLSCGFDFIQLSG--EDSSALGFNAHGGVGCI 204 (292)
Q Consensus 136 P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~-----~~~~~~~~~~~~~~~v~~G--~~~~~~~~~~~G~~G~i 204 (292)
|.. .+-.+-+.+.+++.. +-|+=- +|+ ..+.+..+..+-+...+.. ....-+.....-+.|++
T Consensus 87 ~i~---~~G~e~F~~~~~~~G-v~Gvii--pDLP~ee~~~~~~~~~~~~i~~I~lvsPtt~~~ri~~i~~~s~gfi 156 (242)
T cd04724 87 PIL---QYGLERFLRDAKEAG-VDGLII--PDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred HHH---HHCHHHHHHHHHHCC-CCEEEE--CCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCEE
T ss_conf 766---528999999999759-975870--6999578468999998659838899689887899999997479849
No 140
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=92.62 E-value=0.87 Score=26.34 Aligned_cols=161 Identities=19% Similarity=0.196 Sum_probs=88.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHH
Q ss_conf 0177389888689999999999997699899986723250108999999986543110123-443003674102789999
Q gi|254780276|r 9 LITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGSNNTRESVE 87 (292)
Q Consensus 9 ~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~~~~~~~i~ 87 (292)
++||-. .+...+.+.++..++.|++.+-+= .-.++.+|+.++++.+.+.+.. ++++++. +
T Consensus 3 ~IT~~~----~~~~~~~~~l~~~l~~gv~~iqlR-----~k~~~~~~~~~~a~~~~~~~~~~~~~liIn----------d 63 (196)
T cd00564 3 LITDRR----LDGEDLLEVVEAALKGGVTLVQLR-----EKDLSARELLELARALRELCRKYGVPLIIN----------D 63 (196)
T ss_pred EECCCC----CCCCHHHHHHHHHHHCCCCEEEEC-----CCCCCHHHHHHHHHHHHHHHHHHCCEEEEC----------C
T ss_conf 988986----465149999999998599999986-----799899999999999999999809979978----------8
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH------
Q ss_conf 75343210244320012343343178899999998753023301210011111211106899974320302331------
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV------ 161 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi------ 161 (292)
..+.|.+.|+||+-+.. ...+..+... . .+...++- ..++ +.+.+.+..+.-...+++
T Consensus 64 ~~~lA~~~~~dGvHl~~---~d~~~~~~r~----~---~~~~~iiG---~S~h---~~~e~~~a~~~g~DYi~~gpvf~T 127 (196)
T cd00564 64 RVDLALAVGADGVHLGQ---DDLPVAEARA----L---LGPDLIIG---VSTH---SLEEALRAEELGADYVGFGPVFPT 127 (196)
T ss_pred HHHHHHHHCCCEEECCC---CCCCHHHHHH----H---HCCCCEEE---ECCC---CHHHHHHHHHHCCCEEEECCCCCC
T ss_conf 69999973998795584---6689999998----7---28897588---2478---899999988709993886465578
Q ss_pred --HCC---CCCHHHHHHHHHHCCCCEEECCCCC-CCHHHHHHHCCCCCC
Q ss_conf --001---2211358999973598403201322-100124320334455
Q gi|254780276|r 162 --KDA---TGKIELVSEQRLSCGFDFIQLSGED-SSALGFNAHGGVGCI 204 (292)
Q Consensus 162 --K~~---~~~~~~~~~~~~~~~~~~~v~~G~~-~~~~~~~~~G~~G~i 204 (292)
|.. .-.++.+.++.+..+.++..+.|.. ..+...+..|++|+-
T Consensus 128 ~tK~~~~~~~g~~~l~~~~~~~~~Pv~AiGGI~~~ni~~~~~~G~~giA 176 (196)
T cd00564 128 PTKPGAGPPLGLELLREIAELVEIPVVAIGGITPENAAEVLAAGADGVA 176 (196)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 9888877877889999999867999899858999999999980999999
No 141
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases; InterPro: IPR011830 Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by IPR005671 from INTERPRO. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterised as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase, which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and apparently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea, which lack a threonine dehydratase (mainly Euryarchaeota), should contain both CimA and LeuA genes. This is true for archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in IPR005671 from INTERPRO and one in IPR005675 from INTERPRO which may fulfil these roles. Proteins from other species, which have only one hit to this entry and lack threonine dehydratase, are very likely to be LeuA enzymes.; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=92.59 E-value=0.98 Score=25.97 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHH------CCCHHHHHHHHHHHHHCCCCCCCCC-CC---CCCCHHHHHHHHHHHH
Q ss_conf 999999999976998999867232501------0899999998654311012344300-36---7410278999975343
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPAGTTGESS------TLSHEEHCRIIELCVKTVASRVPVM-AG---IGSNNTRESVELAQYA 92 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~G~tGE~~------~Ls~~Er~~~~~~~~~~~~~r~pii-~g---v~~~~~~~~i~~a~~a 92 (292)
++++-||.-+++||++|++.--||.-| ..|.||=.+..=.+++.++.+=-++ .+ .+.+..+..|++-+.|
T Consensus 73 A~k~DID~AidcgvdsIh~fiaTSpiH~KYKl~~K~~devle~~veAvEYAKEHGLiVEfSAEDATRtd~dfLIk~~k~A 152 (371)
T TIGR02090 73 ALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLKNKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKKA 152 (371)
T ss_pred CCCCCHHHHHHCCCCEEEEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 67310015643698778998048857872348887899999999998987752573553177887658678999998713
Q ss_pred HHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC--CCCEEE
Q ss_conf 21024432001234334317889999999875302--330121
Q gi|254780276|r 93 HSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS--SPIYIY 133 (292)
Q Consensus 93 ~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~--~pi~iY 133 (292)
.++|||=|-+.=- ---++++.+..-+++|-+.+. .||-++
T Consensus 153 ~eAGADRi~~~DT-VGV~~P~km~~l~k~~k~~~kKd~~~sVH 194 (371)
T TIGR02090 153 EEAGADRINVADT-VGVLTPQKMEELIKKIKENVKKDLPVSVH 194 (371)
T ss_pred HHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 3216777550785-56368267999999999863588705886
No 142
>PRK06852 aldolase; Validated
Probab=92.54 E-value=1 Score=25.78 Aligned_cols=168 Identities=15% Similarity=0.140 Sum_probs=91.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC-----------------HHHHHHH
Q ss_conf 99999999769989998672325010899999998654311012344300367410-----------------2789999
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN-----------------NTRESVE 87 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~-----------------~~~~~i~ 87 (292)
+.+++--++.||+++...-. +++......+ ++|+|+-+.+. +.++++
T Consensus 62 e~~~~lAi~ag~~a~Aa~lG--------------~l~~~a~~ya-~IP~ilKlN~~~~L~~~~~~dp~s~~~~sv~~a~- 125 (303)
T PRK06852 62 EHLFRIASKAKIGVFATQLG--------------LIARYGMDYK-DIPYLVKLNSKTNLVKTSQKDPFSNQWLDVDQVV- 125 (303)
T ss_pred HHHHHHHHHCCCCEEEECHH--------------HHHHHHCCCC-CCCEEEEECCCCCCCCCCCCCCCHHCCCCHHHHH-
T ss_conf 99999998549867984344--------------7987640031-6977999657564677666784010106799998-
Q ss_pred HHHHHHHCCCCCCCEECCCCCC-CCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCC--CCCHHHH---HHHHHHCC-H
Q ss_conf 7534321024432001234334-31788999999987530---233012100111112--1110689---99743203-0
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNK-PNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVI--EMDVDTM---AELAATYP-N 157 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~-~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~--~~~~~~l---~~L~~~~p-n 157 (292)
..+.+..+|++||-.. .|+. ..+.+.++-+.++.+.+ .+|++++-+|.-..+ .-+++++ .+++.++. .
T Consensus 126 ~~~~~~~LGa~aVG~T--IY~GSe~e~~ml~e~~~i~~eA~~~Gl~~VlW~YpRG~~ik~e~d~~~iA~aA~~aaeLGAD 203 (303)
T PRK06852 126 EFKKNSGLNILGVGYT--IYLGSEYEAEMLSEAAQIIYEAHKHGLVAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGAD 203 (303)
T ss_pred HHHHHCCCCCEEEEEE--EECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 6523115886599999--85797406999999999999999769908999951587678987678999999999986799
Q ss_pred HHHHHC----CCCCHHHHHHHHHHCCCCEEECCCCCC----CHH----HHHH-HCCCCCCCCCCCCC
Q ss_conf 233100----122113589999735984032013221----001----2432-03344552222321
Q gi|254780276|r 158 IVGVKD----ATGKIELVSEQRLSCGFDFIQLSGEDS----SAL----GFNA-HGGVGCISVTANVV 211 (292)
Q Consensus 158 i~giK~----~~~~~~~~~~~~~~~~~~~~v~~G~~~----~~~----~~~~-~G~~G~is~~~n~~ 211 (292)
|+=+|. .+++.+.+.+.....++...+++|... .++ ..+. -|+.|.+.|= |+|
T Consensus 204 IIKvk~P~~~~~~~~e~f~~~v~~aGr~~VI~SGG~~~~~~~~l~~v~~ai~~gG~~G~iiGR-N~F 269 (303)
T PRK06852 204 FVKVNYPKKEGANPAELFKEAVMAAGRTKVVCAGGSSTDAEEFLKQLYEQIHISGASGNATGR-NIH 269 (303)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEECC-CCC
T ss_conf 898248766789998999999980899559975899898799999999999972995574432-213
No 143
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=92.54 E-value=0.58 Score=27.60 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 27899997534321024432001
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
..+.+.+-++.++++|+||+.+.
T Consensus 70 E~~~M~~dI~~~~~~G~~GvV~G 92 (202)
T pfam03932 70 ELKAMLEDILKAVELGAPGVVLG 92 (202)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 99999999999998698978998
No 144
>pfam01116 F_bP_aldolase Fructose-bisphosphate aldolase class-II.
Probab=92.52 E-value=0.6 Score=27.53 Aligned_cols=191 Identities=13% Similarity=0.111 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|++.++..++-.-+.+...|.- -+.+...++..+.-..+++..++.. ++||..+.-+... .+.++.|-++|+
T Consensus 23 v~~~e~~~avi~AAee~~sPvIlq-~s~~~~~~~g~~~~~~~~~~~a~~~--~VPV~lHLDH~~~---~e~~~~ai~~Gf 96 (283)
T pfam01116 23 VNNLETINAVLEAAEEANSPVIIQ-VSPGAAKYAGAEALAAMVRAAAEKY--SVPVALHLDHGAS---FEGILEAIEAGF 96 (283)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEE-CCCCHHHHCCHHHHHHHHHHHHHHC--CCCEEEECCCCCC---HHHHHHHHHHCC
T ss_conf 798999999999999969999999-6844675589999999999999977--9989996677799---999999998199
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCC------EEEE-----CHHHCCCCCCHHHHHHHHH---------H
Q ss_conf 43200123433431788999999987530---2330------1210-----0111112111068999743---------2
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPI------YIYN-----NPSRTVIEMDVDTMAELAA---------T 154 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi------~iYn-----~P~~~g~~~~~~~l~~L~~---------~ 154 (292)
+.||+-.. ..+-++=++.-+++.+.+ ++++ +-.. ........-+|+...+..+ .
T Consensus 97 tSVM~DgS---~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 173 (283)
T pfam01116 97 SSVMIDGS---HLPFEENIAITKEVVEYAHARGVSVEAELGRIGGEEDGVDNSEDEALYTDPEEAKEFVERTGVDSLAVA 173 (283)
T ss_pred CEEEEECC---CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 86986389---799999999999999999873984899750036756676777632225899999999998698878764
Q ss_pred CCHHHHH-HC--CCCCHHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0302331-00--12211358999973598403201322---100124320334455222232110024444431
Q gi|254780276|r 155 YPNIVGV-KD--ATGKIELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTANVVPRICAEFQQAM 222 (292)
Q Consensus 155 ~pni~gi-K~--~~~~~~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~ 222 (292)
+.|+-|+ |. ..-|++++.++.+..+-.+.+-.|++ +.+-.....|. .=-|+..++-..+.+.+
T Consensus 174 iG~~HG~yk~~~p~L~~~~L~~I~~~~~iPLVlHGgSG~~~e~~~~ai~~Gi-----~KiNi~T~l~~a~~~~~ 242 (283)
T pfam01116 174 IGNVHGVYKPLEPKLDFDRLKEIQAAVDVPLVLHGGSGVPDEEIRKAIKLGV-----AKINIDTDLQWAFTKAV 242 (283)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCC-----EEEEECHHHHHHHHHHH
T ss_conf 3653444689998669999999998739987865899999999999998396-----69985759999999999
No 145
>PRK13129 consensus
Probab=92.42 E-value=1.1 Score=25.67 Aligned_cols=84 Identities=21% Similarity=0.327 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------------------CHHHHHHHHHHHHHHHCCCCE--EE
Q ss_conf 0367410278999975343210244320012343343------------------178899999998753023301--21
Q gi|254780276|r 74 MAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKP------------------NRRGLLAHFGEIATTVSSPIY--IY 133 (292)
Q Consensus 74 i~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~------------------~~~~i~~~~~~i~~~~~~pi~--iY 133 (292)
+.-+|.++.+.+.+.++...+.|+|.+-+.-|+--+. +-+.+++..+++.+..+.|++ -|
T Consensus 24 yitaG~P~~e~s~~~~~~l~~~GaDiiEiGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~~~PivlM~Y 103 (267)
T PRK13129 24 FLMAGDPDLETTAEALLILQENGADLIELGIPYSDPLADGPVIQAAATRALQSGTTLEKVLEMLESLKGKLTIPIILFTY 103 (267)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 87071899899999999999779999997998888776589999999999976987899999999854347888899861
Q ss_pred ECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 0011111211106899974320302331
Q gi|254780276|r 134 NNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 134 n~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
-||.. .+..+-+.+-+++. .+-|+
T Consensus 104 ~N~i~---~~G~e~F~~~~~~~-GvdGv 127 (267)
T PRK13129 104 YNPLL---NRGMERFCEQAAAA-GVAGL 127 (267)
T ss_pred HHHHH---HHHHHHHHHHHHHC-CCCEE
T ss_conf 07898---85599999999866-98757
No 146
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=92.38 E-value=1.1 Score=25.64 Aligned_cols=134 Identities=16% Similarity=0.150 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654311012344300-----------3674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM-----------AGIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii-----------~gv~~~~~~~~i~ 87 (292)
-|.+...+.++.++..+++|+.+.++.. +.+....+.+. ++|++ ..|...+..-...
T Consensus 39 ~~~~~~~~~i~~l~~~~vDgiIi~~~~~-----~~~~~~~~~~~-------~iPvV~~~~~~~~~~~~~V~~D~~~a~~~ 106 (264)
T cd06267 39 EDPEKEREALELLLSRRVDGIILAPSRL-----DDELLEELAAL-------GIPVVLVDRPLDGLGVDSVGIDNRAGAYL 106 (264)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHHC-------CCCEEEEEECCCCCCCCEEEECHHHHHHH
T ss_conf 9989999999999957999999678889-----98999999986-------99889996047999987999787999999
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf 753432102443200123433431788999999987530233---01210011111211106899974320302331001
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP---IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~p---i~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
.+++..+.|..-+.++.+.....+..+-.+-|++..+..+++ ..++..+ ....-..+.+.++.+..|.+.+| .+
T Consensus 107 a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai-~~ 183 (264)
T cd06267 107 AVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGD--FSEESGYEAARELLASGERPTAI-FA 183 (264)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCC--CCHHHHHHHHHHHHHCCCCCCEE-EE
T ss_conf 9999987188856896389877069999999999999869998853075278--97799999999999659999899-87
Q ss_pred CCC
Q ss_conf 221
Q gi|254780276|r 165 TGK 167 (292)
Q Consensus 165 ~~~ 167 (292)
..|
T Consensus 184 ~~D 186 (264)
T cd06267 184 AND 186 (264)
T ss_pred CCH
T ss_conf 887
No 147
>pfam01702 TGT Queuine tRNA-ribosyltransferase. This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues.
Probab=92.37 E-value=0.87 Score=26.35 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=6.7
Q ss_pred HHHHHHHHCCCCCCCEE
Q ss_conf 97534321024432001
Q gi|254780276|r 87 ELAQYAHSIGADALLVV 103 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~ 103 (292)
+-++...+.+++|+.+.
T Consensus 72 ~s~~~l~~~~~~GyaIg 88 (238)
T pfam01702 72 ESAEELAELDFDGYAIG 88 (238)
T ss_pred HHHHHHHCCCCCEEEEC
T ss_conf 99999744899879856
No 148
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=92.27 E-value=1.1 Score=25.55 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543110123443003-----------674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMA-----------GIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~-----------gv~~~~~~~~i~ 87 (292)
-|.+..++.++.+.+.+|+|+.+.++... .+....+.+. .++|++. .|...+..-+..
T Consensus 39 ~~~~~e~~~i~~l~~~~vDGiIi~~~~~~-----~~~~~~~~~~------~~iPvV~id~~~~~~~~~~V~~D~~~~~~~ 107 (269)
T cd06275 39 GDPERQRSYLRMLAQKRVDGLLVMCSEYD-----QPLLAMLERY------RHIPMVVMDWGPEDDFADKIQDNSEEGGYL 107 (269)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCC-----HHHHHHHHHH------CCCCEEEECCCCCCCCCCEEEECHHHHHHH
T ss_conf 99899999999999569999999368898-----3789999982------899889984678889998999789999999
Q ss_pred HHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 75343210244320012-34334317889999999875302330
Q gi|254780276|r 88 LAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPI 130 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi 130 (292)
.+++..+.|..-+..+. |.-. .+..+-.+-|++..+..++++
T Consensus 108 a~~~Li~~G~~~i~~i~~~~~~-~~~~~R~~Gf~~al~~~~i~~ 150 (269)
T cd06275 108 ATRHLIELGHRRIGCITGPLEK-APAQQRLAGFRRAMAEAGLPV 150 (269)
T ss_pred HHHHHHHHCCCEEEECCCCCCC-HHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999998299717755699777-169999999999999859997
No 149
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=92.25 E-value=0.94 Score=26.08 Aligned_cols=118 Identities=17% Similarity=0.248 Sum_probs=64.8
Q ss_pred HHHHH-CCCCEEEEC--CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 99997-699899986--723250108999999986543110123443003674102789999753432102443200123
Q gi|254780276|r 29 EWQIT-EGSGGLVPA--GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP 105 (292)
Q Consensus 29 ~~l~~-~gv~gi~~~--G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P 105 (292)
++.++ -|.|.|.+- ++--+...-|.+|-.++++.+++++ .+|+|++-+++--.|.--+-+-++.+.=.-.++.+
T Consensus 82 Kk~v~~~gaD~I~l~l~s~dP~~~d~s~~e~a~~vk~V~~av--~vPLIi~G~~n~ekD~evl~~~ae~~~g~~~Ll~~- 158 (322)
T PRK04452 82 KKCVEKYGADMITLHLISTDPNGKDKSPEEAAKTVEEVLQAV--DVPLIIGGSGNPEKDAEVLEKAAEAAEGERCLLGS- 158 (322)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC--CCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEE-
T ss_conf 999987188789999415887767689999999999999756--99989976788543899999999974786717724-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 433431788999999987530233012100111112111068999743203023310
Q gi|254780276|r 106 YYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK 162 (292)
Q Consensus 106 ~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK 162 (292)
.+++ -|++|++++ +-|+.|...-..++.++.++|...+-+ .|++
T Consensus 159 ----a~~~----nyk~i~~aA----l~y~h~V~a~sp~DiNlaKqLNi~l~e-~Gv~ 202 (322)
T PRK04452 159 ----AELD----NYKKIAAAA----LAYGHAVIAWSPLDINLAKQLNILLMK-LGLP 202 (322)
T ss_pred ----CHHH----HHHHHHHHH----HHCCCCEEEECCCCHHHHHHHHHHHHH-CCCC
T ss_conf ----3244----099999999----973992899777677889999999998-4998
No 150
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=92.21 E-value=1.1 Score=25.50 Aligned_cols=85 Identities=22% Similarity=0.215 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHH-------HHHCCCCEEEECCCCC----CHHC-----------CCHHHHHHHHHHHHHCC----CCCCC
Q ss_conf 689999999999-------9976998999867232----5010-----------89999999865431101----23443
Q gi|254780276|r 19 IDEDAFVEHIEW-------QITEGSGGLVPAGTTG----ESST-----------LSHEEHCRIIELCVKTV----ASRVP 72 (292)
Q Consensus 19 iD~~~~~~~i~~-------l~~~gv~gi~~~G~tG----E~~~-----------Ls~~Er~~~~~~~~~~~----~~r~p 72 (292)
+..+.+++.++. ..++|.|||-+-|.-| +|.+ =|.|-|.+++..+++.+ +.+.|
T Consensus 131 mt~eeI~~ii~~f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~ 210 (343)
T cd04734 131 MEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFI 210 (343)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 89999999999999999999973998898445777469984698558996767988899989999999999998198776
Q ss_pred CCCCC-------CCCHHHHHHHHHHHHHHCC-CCCCCEE
Q ss_conf 00367-------4102789999753432102-4432001
Q gi|254780276|r 73 VMAGI-------GSNNTRESVELAQYAHSIG-ADALLVV 103 (292)
Q Consensus 73 ii~gv-------~~~~~~~~i~~a~~a~~~G-ad~i~v~ 103 (292)
|.+=. ++.+.+|++++++..++.| +|.+-+.
T Consensus 211 i~~Ris~~~~~~~g~~~~e~~~~~~~l~~~G~vD~l~vs 249 (343)
T cd04734 211 VGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVS 249 (343)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 158867623568989989999999999966997689965
No 151
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=92.21 E-value=1.1 Score=25.50 Aligned_cols=143 Identities=18% Similarity=0.184 Sum_probs=98.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEEC----------CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHHH
Q ss_conf 89999999999997699899986----------723250108999999986543110123443003----6741027899
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPA----------GTTGESSTLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRES 85 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~----------G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~~ 85 (292)
|.+.+.+-++.+.+.|+++|=++ +..|-...-+.+.-.++++.+++.++ +||-+ |.. .+...+
T Consensus 75 dp~~~a~Aa~~~~~~g~~~IDiN~GCP~~kV~k~g~GsaLl~~p~~~~~iv~a~~~a~~--iPVTvKiRlG~~-~~~~~~ 151 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVD--VPVTLKIRTGWA-PEHRNC 151 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEHHCCHHHHHHHHHHHHHCCC--CCEEEEEECCCC-CCHHHH
T ss_conf 99999999998876499989431899989970798365063398999999999973448--746999846888-522439
Q ss_pred HHHHHHHHHCCCCCCCEECC----CCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 99753432102443200123----43343178899999998753023301210011111211106899974320302331
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIP----YYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P----~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
.++++.+++.|++++.|.+- .|..+.+ .++.+.+.++.++|++. .|-..+++...+..+ ..++-|+
T Consensus 152 ~~~~~~~e~aG~~~itvHgRT~~q~y~g~ad---w~~i~~vk~~~~iPvi~------NGDI~~~~da~~~l~-~tg~dgv 221 (321)
T PRK10415 152 EEIAQLAEDCGIQALTIHGRTRACLFNGEAE---YDSIRAVKQKVSIPVIA------NGDITDPLKARAVLD-YTGADAL 221 (321)
T ss_pred HHHHHHHHHCCCCEEEEEHHHHHHHHCCCCC---HHHHHHHHHCCCCCEEE------CCCCCCHHHHHHHHH-HHCCCEE
T ss_conf 9999999856988999972213443169987---79999998547997896------589199999999998-6299999
Q ss_pred HCC---CCCHHHHHHHH
Q ss_conf 001---22113589999
Q gi|254780276|r 162 KDA---TGKIELVSEQR 175 (292)
Q Consensus 162 K~~---~~~~~~~~~~~ 175 (292)
=-+ -+|+--+.++.
T Consensus 222 MigRgal~nPwiF~~i~ 238 (321)
T PRK10415 222 MIGRAAQGRPWIFREIQ 238 (321)
T ss_pred EECHHHHCCCHHHHHHH
T ss_conf 97566536987799999
No 152
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=92.16 E-value=0.87 Score=26.35 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2789999753432102443200123433431788999999987530
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV 126 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~ 126 (292)
+.+...+.++.+++.|+|.|.+.=. .-...++++.+.++.+.+..
T Consensus 141 ~~e~l~~~a~~~~~~Gad~I~i~DT-~G~~~P~~v~~~v~~l~~~~ 185 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVL 185 (333)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC-CCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999998569999997596-44689999999999999862
No 153
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=92.16 E-value=1.2 Score=25.46 Aligned_cols=164 Identities=16% Similarity=0.186 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHC--CCCCCC--CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543110--123443--0036741027899997534321
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKT--VASRVP--VMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~--~~~r~p--ii~gv~~~~~~~~i~~a~~a~~ 94 (292)
-|.+..++.++.++..+++|+.+.|+++.. .+...++.+.-.-. .+...+ -+..|...+..-....+++..+
T Consensus 39 ~~~~~e~~~i~~l~~~~vDGiIi~~~~~~~----~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~d~~~~~~~a~~~L~~ 114 (268)
T cd06289 39 EDVERQEQLLSTMLEHGVAGIILCPAAGTS----PDLLKRLAESGIPVVLVAREVAGAPFDYVGPDNAAGARLATEHLIS 114 (268)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCC----HHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 998999999999996599989994688899----9999999975998998367679999878997779999999999997
Q ss_pred CCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCC---CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHH
Q ss_conf 0244320012-3433431788999999987530233---01210011111211106899974320302331001221135
Q gi|254780276|r 95 IGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSP---IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIEL 170 (292)
Q Consensus 95 ~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~p---i~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~ 170 (292)
.|..-+..+. +.....+.+-. +=|++..+..+++ .++++.+. ...-..+.+.++.++.|.+.++ .++.|...
T Consensus 115 ~G~~~i~~i~~~~~~~~~~~R~-~Gf~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai-i~~~D~~A 190 (268)
T cd06289 115 LGHRRIAFIGGLEDSSTRRERL-AGYRAALAEAGLPFDSELVVEGPP--SRQGGAEAVAQLLDLPPRPTAI-VCFNDLVA 190 (268)
T ss_pred HCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHCCCCCCCCEEECCCC--CHHHHHHHHHHHHHCCCCCCEE-CCCCHHHH
T ss_conf 3987099952898870699999-999999997699866434531688--6556999999998469998620-35768999
Q ss_pred H------HHHHHHCCCCEEECCCCCCC
Q ss_conf 8------99997359840320132210
Q gi|254780276|r 171 V------SEQRLSCGFDFIQLSGEDSS 191 (292)
Q Consensus 171 ~------~~~~~~~~~~~~v~~G~~~~ 191 (292)
. .+.-...|.++.+ .|.|..
T Consensus 191 ~g~l~~l~~~gi~vp~disi-igfd~~ 216 (268)
T cd06289 191 FGAMSGLRRAGLTPGRDIAV-VGFDDV 216 (268)
T ss_pred HHHHHHHHHCCCCCCCCEEE-EEECCH
T ss_conf 99999999849999985499-995787
No 154
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=92.16 E-value=0.68 Score=27.12 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6899999999999976998999867232501089-999999865431101234430036741027899997534321024
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLS-HEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls-~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
.|++.++..++-.-+.+...|.- -+.|...+++ ...-..+++...+..+-.+||..+.-+..+ .+.++.|-++|+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIlq-~s~~~~~~~~g~~~~~~~~~~~~~~~~a~VPV~lHLDH~~~---~e~~~~ai~~GF 101 (286)
T PRK08610 26 NNLEFTQAILEASQEENAPVILG-VSEGAARYMSGFYTIVKMVEGLMHDLNITIPVAIHLDHGSS---FEKCKEAIDAGF 101 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEE-ECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 98999999999999968799999-17668876576889999999999983799888998989999---999999997199
Q ss_pred CCCCEECC
Q ss_conf 43200123
Q gi|254780276|r 98 DALLVVIP 105 (292)
Q Consensus 98 d~i~v~~P 105 (292)
+-||+-..
T Consensus 102 tSVM~DgS 109 (286)
T PRK08610 102 TSVMIDAS 109 (286)
T ss_pred CEEEECCC
T ss_conf 98998199
No 155
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=92.16 E-value=0.9 Score=26.24 Aligned_cols=18 Identities=17% Similarity=-0.053 Sum_probs=10.2
Q ss_pred CCCCCCHHHHHHHCCCCC
Q ss_conf 132210012432033445
Q gi|254780276|r 186 SGEDSSALGFNAHGGVGC 203 (292)
Q Consensus 186 ~G~~~~~~~~~~~G~~G~ 203 (292)
.|.-..++....+|+|=+
T Consensus 248 vG~P~~i~~~V~~GvD~F 265 (366)
T PRK00112 248 VGTPEDLVEGVARGVDMF 265 (366)
T ss_pred CCCHHHHHHHHHHCCCCH
T ss_conf 899899999999389811
No 156
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=92.06 E-value=1.2 Score=25.37 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=15.0
Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHH
Q ss_conf 654311012344300367410278
Q gi|254780276|r 60 IELCVKTVASRVPVMAGIGSNNTR 83 (292)
Q Consensus 60 ~~~~~~~~~~r~pii~gv~~~~~~ 83 (292)
++.+.+..++++|+|--+|++=|-
T Consensus 128 i~~~r~~l~~~~pLIGF~GaPwTL 151 (347)
T PRK00115 128 VRLLRRELPGEVPLIGFAGSPWTL 151 (347)
T ss_pred HHHHHHHCCCCCCEEEECCCHHHH
T ss_conf 999999728888657644765999
No 157
>pfam03060 NPD 2-nitropropane dioxygenase. Members of this family catalyse the denitrification of a number of nitroalkanes using either FAD or FMN as a cofactor.
Probab=91.99 E-value=0.99 Score=25.93 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 112017738988868999999999999769989998672325010899999998654311012344300367
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI 77 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv 77 (292)
+|.+..|+. + + +..+++--..++|.=|++-.| ++|.++-.+.++.+.+..+. |+-++.
T Consensus 12 ~PIiqapM~--~-v---s~~~LaaAVs~AGglG~i~~~------~~~~e~l~~~i~~~~~~t~~--pfgvnl 69 (330)
T pfam03060 12 YPIVQPPMG--G-I---STPELAAAVSEAGGLGVLGAG------YLTPDRLEKEIRKVKELTDK--PFGVNL 69 (330)
T ss_pred CCEECCCCC--C-C---CCHHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHHHHHHCC--CCCCCC
T ss_conf 287988877--6-7---869999999967988861277------69999999999999986488--763133
No 158
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=91.97 E-value=1.2 Score=25.30 Aligned_cols=64 Identities=14% Similarity=0.087 Sum_probs=47.5
Q ss_pred CCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 34430036-74102789999753432102443200------123433431788999999987530233012
Q gi|254780276|r 69 SRVPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 69 ~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
++..+|+| |+-.|-++..+-|+..++.|++.+-- ..||-|..--.+=.++.+++.+.+++|++-
T Consensus 117 ~~~~iIAGPCsvES~eQi~~~A~~vk~~G~~~lRgGa~KPRTsPysFqGlG~eGL~~L~~a~~e~gl~vvT 187 (360)
T PRK12595 117 GNQSFIFGPCAVESYEQVAAVAQALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYDLAVIS 187 (360)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 96438956883678999999999999759755725556899999765768457999999999985997279
No 159
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=91.96 E-value=0.22 Score=30.63 Aligned_cols=82 Identities=21% Similarity=0.145 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCE--ECCCCCC---------CCHHHHHHHHHHH
Q ss_conf 999986543110123443003674-102789999753432102443200--1234334---------3178899999998
Q gi|254780276|r 55 EHCRIIELCVKTVASRVPVMAGIG-SNNTRESVELAQYAHSIGADALLV--VIPYYNK---------PNRRGLLAHFGEI 122 (292)
Q Consensus 55 Er~~~~~~~~~~~~~r~pii~gv~-~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~~~---------~~~~~i~~~~~~i 122 (292)
++.+.++...+.. ...|+|+.+. ..+.++..+.++..++.|+|++-+ ..|..-. .+.+.+.+-.+.+
T Consensus 85 ~~~~~~~~~~~~~-~~~~~i~si~~~~~~~~~~~~a~~~~~~gad~lElNiScPN~~~~~~~g~~~~~~~~~l~~i~~~v 163 (299)
T cd02940 85 YWLKEIRELKKDF-PDKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWV 163 (299)
T ss_pred HHHHHHHHHHHCC-CCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9999999987527-997379885178987899999999987188889982678898761234555244999999999999
Q ss_pred HHHHCCCCEEEECHH
Q ss_conf 753023301210011
Q gi|254780276|r 123 ATTVSSPIYIYNNPS 137 (292)
Q Consensus 123 ~~~~~~pi~iYn~P~ 137 (292)
.+.+++|+++==.|.
T Consensus 164 ~~~~~~Pi~vKLsP~ 178 (299)
T cd02940 164 REAVKIPVIAKLTPN 178 (299)
T ss_pred HHHCCCCEEEECCCC
T ss_conf 862478648962887
No 160
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=91.72 E-value=0.95 Score=26.05 Aligned_cols=198 Identities=16% Similarity=0.156 Sum_probs=106.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCC----------CCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 123443003674102789999753432102443200--12343----------343178899999998753023301210
Q gi|254780276|r 67 VASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYY----------NKPNRRGLLAHFGEIATTVSSPIYIYN 134 (292)
Q Consensus 67 ~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~----------~~~~~~~i~~~~~~i~~~~~~pi~iYn 134 (292)
....-|+.+++++.+.+...+-++.+++.|+|.|=+ .-|.- .-...+-+.+-.+.+.+++++||-+=
T Consensus 61 ~~~E~Pv~vQl~G~dp~~la~Aa~i~~~~g~d~IDlN~GCP~~kV~~g~~Ga~Lm~~p~~v~~iv~a~~~a~~~PVTvK- 139 (333)
T PRK11815 61 DPEEHPVALQLGGSDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVK- 139 (333)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEEHHHHCCHHHHHHHHHHHHHHCCCCEEEE-
T ss_conf 9877987999747999999999999987398853523899868873278017870799999999999987348853578-
Q ss_pred CHHHCCCCC--CHHHHHHHHHHCCHHHHHHC----C--------C---------CCHHHHHHHHHHCCCCEEECCCCCCC
Q ss_conf 011111211--10689997432030233100----1--------2---------21135899997359840320132210
Q gi|254780276|r 135 NPSRTVIEM--DVDTMAELAATYPNIVGVKD----A--------T---------GKIELVSEQRLSCGFDFIQLSGEDSS 191 (292)
Q Consensus 135 ~P~~~g~~~--~~~~l~~L~~~~pni~giK~----~--------~---------~~~~~~~~~~~~~~~~~~v~~G~~~~ 191 (292)
-+.|.+= +.+.+.++++.+.. .|++. + | -|++.+.++.+..+.-..+.+|.=..
T Consensus 140 --~RlG~d~~d~~~~l~~f~~~~~~-aG~~~i~vH~R~a~l~Glspk~nR~ippl~~~~v~~lk~~~p~ipvi~NGdI~s 216 (333)
T PRK11815 140 --HRIGIDDQDSYEFLCDFVDTVAE-AGCDRFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEINGGIKT 216 (333)
T ss_pred --EECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf --63167777528999999999997-599889996027877267877750587304899999997667871884599699
Q ss_pred ---HHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH---HHHHHHHHHHHHHHHHHCCC-CH-HHHHHHHHH-CC
Q ss_conf ---0124320334455222232-110024444431178827---99999999999999984268-93-899999998-69
Q gi|254780276|r 192 ---ALGFNAHGGVGCISVTANV-VPRICAEFQQAMIRGDYR---QALLYQDKLMPLHQALFMEP-AV-CCVKYALSR-LG 261 (292)
Q Consensus 192 ---~~~~~~~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~---~A~~l~~~l~~l~~~~~~~~-~~-~~~K~~l~~-~G 261 (292)
....+. .++|++.|=+.+ -|.+..++-+.+. |+.. .-.++-+...+..+.....+ .+ ...|..+.. .|
T Consensus 217 ~~~~~~~l~-~~DGVMiGRga~~nPwif~~id~~~~-g~~~~~~s~~ei~~~~~~y~~~~~~~g~~~~~~~rHl~~~~~G 294 (333)
T PRK11815 217 LEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDRELF-GEPAPVPSREEVLEAMLPYIEAHLAQGGRLNHITRHMLGLFQG 294 (333)
T ss_pred HHHHHHHHH-CCCEEEEHHHHHCCCHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
T ss_conf 999999985-59962114867559978999999984-8999999999999999999999998499889999999998649
Q ss_pred CCCCCCCCC
Q ss_conf 889987678
Q gi|254780276|r 262 RNVSLAVRS 270 (292)
Q Consensus 262 ~~~~~~~R~ 270 (292)
++-....|.
T Consensus 295 ~pGak~~R~ 303 (333)
T PRK11815 295 LPGARRWRR 303 (333)
T ss_pred CCCHHHHHH
T ss_conf 987899999
No 161
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=91.67 E-value=0.4 Score=28.77 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 27899997534321024432001234334317889999999875302330121001111121110689997432030233
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
|.+|..+.||.++++|.|++||.-- ...+++.+-+-.+.|-+.+++|++++ |. +.+.|-|.++- |-.
T Consensus 11 ~~~~~~~IAk~~~~aGtD~ilvGGs--~Gi~e~~ld~~v~~ik~~~~~p~iLF--PG------~~~~Ls~~ADA---vlF 77 (212)
T TIGR01769 11 SSDELKKIAKNAKEAGTDAILVGGS--LGISEDKLDQVVKKIKEITNLPVILF--PG------SVNLLSRKADA---VLF 77 (212)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC--CCCCHHHHHHHHHHHHHCCCCCEEEC--CC------CHHHHHHHHHH---HHH
T ss_conf 8456999999998528988983663--37335478899998640157866882--78------84578888659---888
Q ss_pred HH-CCCCCHHH-------HHHHHHHCCCCEEECCCCCCCHHHHHHHC---CCCCCCCCCCCCCCHHHHHHHHHCCCCCHH
Q ss_conf 10-01221135-------89999735984032013221001243203---344552222321100244444311788279
Q gi|254780276|r 161 VK-DATGKIEL-------VSEQRLSCGFDFIQLSGEDSSALGFNAHG---GVGCISVTANVVPRICAEFQQAMIRGDYRQ 229 (292)
Q Consensus 161 iK-~~~~~~~~-------~~~~~~~~~~~~~v~~G~~~~~~~~~~~G---~~G~is~~~n~~P~~~~~l~~~~~~gd~~~ 229 (292)
+= -.|.|.++ -..++....+++-++. +.+=-...| +.|++ |.++..|.. +-+...
T Consensus 78 mSlLNS~d~yfivGaqi~aA~~i~~~~PrlE~Ip----~AY~iv~~G~ktavG~v-G~~~~Ip~~---------~~~~A~ 143 (212)
T TIGR01769 78 MSLLNSADTYFIVGAQIKAAVLIKKLQPRLEVIP----TAYLIVGPGGKTAVGYV-GKARLIPYD---------KPEIAA 143 (212)
T ss_pred HHHHCCCCCCEEECCHHHHHHHHHHHCCCCCCCC----EEEEEECCCCCEEEEEE-EECCCCCCC---------CHHHHH
T ss_conf 8865369973674151578999987278856365----22688758874044652-001258998---------666899
Q ss_pred HHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999999999984268----------93899999998698899876788
Q gi|254780276|r 230 ALLYQDKLMPLHQALFMEP----------AVCCVKYALSRLGRNVSLAVRSP 271 (292)
Q Consensus 230 A~~l~~~l~~l~~~~~~~~----------~~~~~K~~l~~~G~~~~~~~R~P 271 (292)
+-.|-.+.+-+.-+.+..| .++.+|......-++.|+..|.|
T Consensus 144 ~Y~LAA~Y~G~~~vYLEAGSGAs~Pv~~e~i~~~k~~~~~I~LIVGGGIr~~ 195 (212)
T TIGR01769 144 AYALAAKYLGFKLVYLEAGSGASEPVSPETISLVKKKISSIPLIVGGGIRSP 195 (212)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEECCCCCCH
T ss_conf 9999998741351213105786667866799999985489727752775888
No 162
>PRK13113 consensus
Probab=91.52 E-value=1.3 Score=24.97 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=103.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC----CCCHHC------------CCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 738988868999999999999769989998672----325010------------8999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGT----TGESST------------LSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~----tGE~~~------------Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|+|-|=++=- ..++.. .+.+.-.++++...+. ...+|++.
T Consensus 21 ~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~-~~~~Pivl 99 (263)
T PRK13113 21 AYVMAGDPDYDTSLEVMRGLPAAGVDIIELGMPFTDPMADGPTIQLAGQRALEGGMTLDRTLDMVRAFRKE-DDTTPIVM 99 (263)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCCEEE
T ss_conf 88738289979999999999976999999789888877658999999999997798388999999975123-89988899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++.= +..++-. -|...+..-++..+..=.|. -+.+-+.++++
T Consensus 100 M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipD-----LP~eE~~-~~~~~~~~~~l~~I~lvaPt-----t~~~Ri~~i~~ 168 (263)
T PRK13113 100 MGYYNPIYSRGVDRFLAEAKEAGIDGLIVVD-----LPPEEDS-ELCLPAQAAGLNFIRLATPT-----TDDRRLPKVLQ 168 (263)
T ss_pred EECHHHHHHHHHHHHHHHHHHCCCCEEEECC-----CCHHHHH-HHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 8313689885699999998777943697179-----9978889-99999997798679994799-----99999999983
Q ss_pred HCCHHHHH---------HCCC-CCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 20302331---------0012-211-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIVGV---------KDAT-GKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~gi---------K~~~-~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
.-..+++. +... .+. ..+.++++...-.+.+--| ....-...+..+++|++.|++
T Consensus 169 ~a~gFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~~~~~~~~ADGvIVGSa 235 (263)
T PRK13113 169 NTSGFVYYVSITGITGAAAAQAADVAPEVARIKAATDLPVIVGFGITTPEAAQAIAGVADGCVVGSA 235 (263)
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 3898489983455668775543779999999985479988998378998999999733999998689
No 163
>PRK13133 consensus
Probab=91.51 E-value=1.3 Score=24.96 Aligned_cols=186 Identities=15% Similarity=0.074 Sum_probs=95.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCC---CCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------089999999865431101---23443
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTV---ASRVP 72 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~---~~r~p 72 (292)
||---|--|.+...+.++.+.+.|+|-+=++=-. .++. -++.++-.++++.+.+.- .-.+|
T Consensus 19 ~yitaG~P~~~~t~~~i~~l~~~GaDiiElGiPFSDP~ADGpvIQ~A~~rAL~~G~~~~~~~~~~~~~r~~~~~~~~~~P 98 (267)
T PRK13133 19 AYYMPEFPVAGATLPVLEALQESGADIIELGIPYSDPIGDGPVIQNAAHTAIRNGVSVRSLLELVRKARNGEGCRKITVP 98 (267)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 78568699989999999999975999899789988866668999999999998699899999999999730243466877
Q ss_pred CCCCCCCCHHH--HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHH
Q ss_conf 00367410278--9999753432102443200123433431788999999987530233012100111112111068999
Q gi|254780276|r 73 VMAGIGSNNTR--ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAE 150 (292)
Q Consensus 73 ii~gv~~~~~~--~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~ 150 (292)
++.=.--+..- ..-.+.+.|+++|+||+++.= +..++- .-|...++.-+++.+.-=.|. -+.+-+.+
T Consensus 99 ivlMtY~N~i~~yG~e~F~~~~~~aGvdGlIipD-----LP~eE~-~~~~~~~~~~gl~~I~lvaPt-----t~~eRi~~ 167 (267)
T PRK13133 99 ILLMGYCNPLIAYGGDCFLADAVKAGVDGLLIPD-----LPPEEA-IDFLERAKNFGLTVVFLISPV-----TPPERIEF 167 (267)
T ss_pred EEEHHHHHHHHHHCHHHHHHHHHHCCCCEEECCC-----CCHHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHH
T ss_conf 8715645799984779999999986987887789-----996888-999999984698602442899-----99999999
Q ss_pred HHHHCCHHHHHH---CCCC-------C----H-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 743203023310---0122-------1----1-3589999735984032013-221001243203344552222
Q gi|254780276|r 151 LAATYPNIVGVK---DATG-------K----I-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 151 L~~~~pni~giK---~~~~-------~----~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
+++.-..+++.= =.+| + . +.+.++++..+..+.+--| ....-...+..-++|++.|++
T Consensus 168 i~~~s~GFiY~vs~~GvTG~~~~~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~~~~i~~~ADGvIVGSa 241 (267)
T PRK13133 168 IDSLSTDFSYCLAVNATTGTAKLSDAGTEAAVDEYLKRVRQHTKKKFVVGFGIKDRERVEHMWELADGAVVGTA 241 (267)
T ss_pred HHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 98427895799980013467755554267899999999997189987996687999999999822999998789
No 164
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=91.45 E-value=0.97 Score=25.99 Aligned_cols=46 Identities=11% Similarity=0.083 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHHHHHH-HCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 674102789999753432-10244320012343343178899999998753
Q gi|254780276|r 76 GIGSNNTRESVELAQYAH-SIGADALLVVIPYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 76 gv~~~~~~~~i~~a~~a~-~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~ 125 (292)
|-.....+..++..+... ..+.. +.. .-...+.++..++.+.+.+.
T Consensus 68 G~~n~G~~~~~~~l~~~~~~~~~p---vi~-si~~~~~~d~~~~~~~~~~~ 114 (296)
T cd04740 68 GLQNPGVEAFLEELLPWLREFGTP---VIA-SIAGSTVEEFVEVAEKLADA 114 (296)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCE---EEE-EECCCCHHHHHHHHHHHHHC
T ss_conf 378886489998789863568971---899-81689878999999998864
No 165
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=91.44 E-value=1.1 Score=25.59 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=4.8
Q ss_pred HHCCCCCCCEE
Q ss_conf 21024432001
Q gi|254780276|r 93 HSIGADALLVV 103 (292)
Q Consensus 93 ~~~Gad~i~v~ 103 (292)
+.+|+|-+|..
T Consensus 150 ~~iGsDI~m~l 160 (372)
T PRK01008 150 KDLGADIIIPL 160 (372)
T ss_pred HHHCCCEEEEC
T ss_conf 97489889987
No 166
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=91.39 E-value=1.4 Score=24.88 Aligned_cols=102 Identities=16% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654-----3110123443003674102789999753432
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYAH 93 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~ 93 (292)
=|.+..++.++.+.+.+|+|+.+.++. .+.+....+.+. .++...+.. ..|...+-+-+...++|.-
T Consensus 39 ~~~~~e~~~i~~l~~~~vdGiIi~~~~-----~~~~~~~~l~~~~iPvV~~~~~~~~~---~~v~~dn~~~~~~~~~~Li 110 (265)
T cd06285 39 DNPDAQRRAIEMLLDRRVDGLILGDAR-----SDDHFLDELTRRGVPFVLVLRHAGTS---PAVTGDDVLGGRLATRHLL 110 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-----CCHHHHHHHHHCCCCEEEECCCCCCC---CEEEECHHHHHHHHHHHHH
T ss_conf 998999999999995699999976887-----99899999996799789985568999---9798777999999999999
Q ss_pred HCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 1024432001-23433431788999999987530233
Q gi|254780276|r 94 SIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 94 ~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
+.|..-+.++ .|.....+. +-.+-|++.++..+++
T Consensus 111 ~~G~~~i~~l~~~~~~~~~~-~R~~Gf~~a~~~~~~~ 146 (265)
T cd06285 111 DLGHRRIAVLAGPDYASTAR-DRLAGFRAALAEAGIE 146 (265)
T ss_pred HHCCCCEEECCCCCCCCHHH-HHHHHHHHHHHHCCCC
T ss_conf 83886587547887770599-9999999999986999
No 167
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=91.34 E-value=1.4 Score=24.85 Aligned_cols=177 Identities=20% Similarity=0.295 Sum_probs=81.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 73898886899999999999976998999867232501089999999865431101234430036741027899997534
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQY 91 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~ 91 (292)
-.|.|-..+.+.+.+. ...+|.|.++++||++... +.++..+.+ .+... .+|++.=.++.+. +
T Consensus 5 liDPdK~~~~~~l~~~---~~~sgtDai~VGGS~~~~~--~~~~~v~~i---k~~~~-~~PvilfPg~~~~---i----- 67 (219)
T cd02812 5 KLDPDKELVDEEIAKL---AEESGTDAIMVGGSDGVSS--TLDNVVRLI---KRIRR-PVPVILFPSNPEA---V----- 67 (219)
T ss_pred CCCCCCCCCHHHHHHH---HHHHCCCEEEECCCCCCHH--HHHHHHHHH---HHHCC-CCCEEEECCCHHH---C-----
T ss_conf 0589998988999999---9976999999937557447--799999999---97378-9998995798665---6-----
Q ss_pred HHHCCCCCCCEEC------CCCCCCCHHHHHHHHHHHH---HHHCCCCEEEECHHH-CC------CCCCHHHHHHHHHHC
Q ss_conf 3210244320012------3433431788999999987---530233012100111-11------211106899974320
Q gi|254780276|r 92 AHSIGADALLVVI------PYYNKPNRRGLLAHFGEIA---TTVSSPIYIYNNPSR-TV------IEMDVDTMAELAATY 155 (292)
Q Consensus 92 a~~~Gad~i~v~~------P~~~~~~~~~i~~~~~~i~---~~~~~pi~iYn~P~~-~g------~~~~~~~l~~L~~~~ 155 (292)
.-+||+++++. |+|.-..+-+-...++.+. +..+..=++-| |.. ++ ...+++.....+. -
T Consensus 68 --s~~aDa~lf~sllNs~n~~~lig~~~~aa~~~~~~~~~~e~ip~gYiv~~-~g~~v~~v~~a~~~~~~~~~~ayAl-a 143 (219)
T cd02812 68 --SPGADAYLFPSVLNSGDPYWIIGAQAEAAPEVGKIIPWLELIPEGYLVLN-PDSTVARVTGAKTDLKPEDAAAYAL-A 143 (219)
T ss_pred --CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC-CCCCEEEEECCCCCCCHHHHHHHHH-H
T ss_conf --86778688687533899236778899999987431676322005789987-9981488824647999899999999-9
Q ss_pred CHHHHHH----CCCC---CHHHHHHHHHHCCCCEEECCC-CC--CCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3023310----0122---113589999735984032013-22--1001243203344552222321
Q gi|254780276|r 156 PNIVGVK----DATG---KIELVSEQRLSCGFDFIQLSG-ED--SSALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 156 pni~giK----~~~~---~~~~~~~~~~~~~~~~~v~~G-~~--~~~~~~~~~G~~G~is~~~n~~ 211 (292)
-...|+| |.|| +.+.++..++..++-..++.| -. +........|++-.+ +||.+
T Consensus 144 ae~lg~~~iYLEgSGa~v~~e~V~~vk~~l~~~~LivGGGIrs~e~a~~~~~AgAD~IV--vGn~i 207 (219)
T cd02812 144 AEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIV--VGNIV 207 (219)
T ss_pred HHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEE--ECCCE
T ss_conf 99829938999568997999999999984679709992897999999999986999999--88722
No 168
>PRK13118 consensus
Probab=91.27 E-value=1.4 Score=24.80 Aligned_cols=213 Identities=15% Similarity=0.085 Sum_probs=113.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|+|-|=++=-. .++. -.+.+.-.++++...+. ...+|++.
T Consensus 21 ~yitaG~P~~e~t~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~v~~~r~~-~~~~Pivl 99 (269)
T PRK13118 21 PFVTAGDPSPEASVPLLHGLVAAGADVIELGMPFSDPMADGPAIQLASERALAAGQGLADVLQMVREFRQG-DQTTPVVL 99 (269)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCEEE
T ss_conf 88717189989999999999976999999789888866657999999999996798688999999998643-89999899
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 67410278--9999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNTR--ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~~--~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+... ..-++++.|+++|+||+++.= +..++. +-|.+.++..++..+..=.|. -+.+-+.++++
T Consensus 100 M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipD-----LP~ee~-~~~~~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~~ 168 (269)
T PRK13118 100 MGYLNPIEIYGYERFVAQAKEAGVDGLILVD-----LPPEEA-DELRAPAQAHGLDFIRLTSPT-----TSDERLPRVLE 168 (269)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCEEECCC-----CCHHHH-HHHHHHHHHCCCCHHEEECCC-----CCHHHHHHHHH
T ss_conf 7400078786399999999985997464589-----997899-999999997598464036989-----87899999984
Q ss_pred HCCHHHHH---------HCC-CCCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20302331---------001-2211-3589999735984032013-2210012432033445522223211002444443
Q gi|254780276|r 154 TYPNIVGV---------KDA-TGKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVPRICAEFQQA 221 (292)
Q Consensus 154 ~~pni~gi---------K~~-~~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~ 221 (292)
.-..+++. +.. ..+. +.+.++++...-.+.+--| ....-...+..+++|.+.|++- ++..+
T Consensus 169 ~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~v~~~aDGvIVGSa~------Vk~i~- 241 (269)
T PRK13118 169 HASGYLYYVSLAGVTGAAALDTEHVEEAVARLRRHTDLPVVVGFGIRDAESAAAIARLADGVVVGSAL------VDAIA- 241 (269)
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCCEEEECHHH------HHHHH-
T ss_conf 37883899854566787766719899999999962589817871679999999998009999985899------99998-
Q ss_pred HCCCCCHH-HHHHHHHHHHHHHHH
Q ss_conf 11788279-999999999999998
Q gi|254780276|r 222 MIRGDYRQ-ALLYQDKLMPLHQAL 244 (292)
Q Consensus 222 ~~~gd~~~-A~~l~~~l~~l~~~~ 244 (292)
..+|.++ ..++.+.+..+.+.+
T Consensus 242 -~~~~~~~~~~~~~~~~k~lk~al 264 (269)
T PRK13118 242 -EAKDVDQAVERVLALLAELRQAL 264 (269)
T ss_pred -HCCCHHHHHHHHHHHHHHHHHHH
T ss_conf -56782679999999999999999
No 169
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=91.19 E-value=1.1 Score=25.70 Aligned_cols=45 Identities=22% Similarity=0.211 Sum_probs=22.7
Q ss_pred HHHHHHHHCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 975343210244320012343-343178899999998753023301
Q gi|254780276|r 87 ELAQYAHSIGADALLVVIPYY-NKPNRRGLLAHFGEIATTVSSPIY 131 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~~P~~-~~~~~~~i~~~~~~i~~~~~~pi~ 131 (292)
+.++.++++|+|++.+.-.-- -...+-..+....++.+++++|++
T Consensus 120 ~~A~~a~~~G~D~iV~qG~EAGGH~G~~~~~~Lvp~v~d~~~iPVi 165 (307)
T TIGR03151 120 ALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVI 165 (307)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 9999999649999997455446877864378779999850468657
No 170
>PRK13114 consensus
Probab=91.14 E-value=1.5 Score=24.71 Aligned_cols=184 Identities=14% Similarity=0.123 Sum_probs=105.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|.-|.+...+.++-+.+.|+|-|=++=-. .++. -.+.+.-.++++.+.+.. ..+|++.
T Consensus 17 ~yitaG~P~~~~t~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~rAL~~G~~l~~~f~~v~~~r~~~-~~~Pivl 95 (266)
T PRK13114 17 AFITGGDPTPGDTAANLDALVAGGADVIELGMPFTDPMADGPAIQAANLRSLAAGTTTADIFRIAAEFRQRH-PEVPLVL 95 (266)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCEEE
T ss_conf 887071899899999999999769999997999888677689999999999986997999999999987418-9988799
Q ss_pred CCCCC--HHHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 67410--27899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSN--NTRESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~--~~~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.--+ -....-++++.++++|+||+++. .| .++ ...|...++..++..+.-=.|. -+.+-+.+++
T Consensus 96 M~Y~N~i~~~G~~~F~~~~~~aGvdG~IipDLP------~eE-~~~~~~~~~~~gi~~I~liaPt-----t~~~Ri~~i~ 163 (266)
T PRK13114 96 MGYANPMVRRGPDWFAAECKKAGVDGVICVDIP------PEE-DAELGPALRAAGIDPIRLATPT-----TDAARLPAVL 163 (266)
T ss_pred EEEHHHHHHHHHHHHHHHHHHCCCCEEEECCCC------HHH-HHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHH
T ss_conf 863019998649999999997499779845899------788-8999999997499726775699-----9799999999
Q ss_pred HHCCHHHHH---------HCCCC-CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 320302331---------00122-11-3589999735984032013-221001243203344552222
Q gi|254780276|r 153 ATYPNIVGV---------KDATG-KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~gi---------K~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
+.-..+++. +.... +. +.+.++++...-.+.+--| .+..-...+...++|++.|++
T Consensus 164 ~~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSa 231 (266)
T PRK13114 164 EGASGFLYYVSVAGITGMQQAAQASIEAAVARIKAATDLPVAVGFGVRTPEQAAAIARVADGVVVGSA 231 (266)
T ss_pred HHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECHH
T ss_conf 73899589984455667765665889999999997079986998366989999999800999998199
No 171
>pfam03437 BtpA BtpA family. The BtpA protein is tightly associated with the thylakoid membranes, where it stabilizes the reaction centre proteins of photosystem I.
Probab=91.12 E-value=1.5 Score=24.69 Aligned_cols=189 Identities=14% Similarity=0.101 Sum_probs=89.8
Q ss_pred CCCCCCCCCC--HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCH--HHHHHHHHHHHHCCCCCCCCCCCCCC--CHHHH
Q ss_conf 7738988868--999999999999769989998672325010899--99999865431101234430036741--02789
Q gi|254780276|r 11 TPFTKGNLID--EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSH--EEHCRIIELCVKTVASRVPVMAGIGS--NNTRE 84 (292)
Q Consensus 11 TPf~~d~~iD--~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~--~Er~~~~~~~~~~~~~r~pii~gv~~--~~~~~ 84 (292)
||+. +++++ .+.-.+.++-|.+.|+||+.+ .+.|..+++.. -|....+..++..+...+.+-.|+.- ++...
T Consensus 17 sP~~-~~~~~~iie~A~~ea~~l~~~GvDgviv-EN~~D~Py~~~~~~etvaamt~i~~~v~~~~~iP~GvnvL~nd~~a 94 (254)
T pfam03437 17 SPGY-KANLDAVIDKAVSDAMALEEGGFDAVIL-ENYGDAPYLKTVGPETVAAMTVIAGEVKSDVSIPLGINVLRNDAVA 94 (254)
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf 9888-9999999999999999999779988998-0689977746776698999999999998744887367776178589
Q ss_pred HHHHHHHHHHCCCCCCCEEC--------CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCC---HHHHHH-HH
Q ss_conf 99975343210244320012--------3433431788999999987530233012100111112111---068999-74
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVI--------PYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMD---VDTMAE-LA 152 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~--------P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~---~~~l~~-L~ 152 (292)
+++ .|...|++.|-+-. --++.+.-.++.+|-+.+- + ++. ++.|.-...+..+. .+...+ ..
T Consensus 95 ala---iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~~~~r~R~~l~-a-~v~-i~aDV~~Kh~~~l~~~~~~~~~~~~~ 168 (254)
T pfam03437 95 ALA---IAYAVGADFIRVNVLTGVAASDQGILEGNAGELARYRKLLP-S-RIK-ILADVHVKHAVHLGNRDIESAVLDTI 168 (254)
T ss_pred HHH---HHHHHCCCEEEECCEECEEECCCCCCCCCHHHHHHHHHHCC-C-CCE-EEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 999---99982997698713765333577531553899999999719-9-958-99755001254579999899999999
Q ss_pred HHC--CHHHHHHCC---CCCHHHHHHHHHHCCCCEEECCCCCC-CHHHHHHHCCCCCCCCCC
Q ss_conf 320--302331001---22113589999735984032013221-001243203344552222
Q gi|254780276|r 153 ATY--PNIVGVKDA---TGKIELVSEQRLSCGFDFIQLSGEDS-SALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~--pni~giK~~---~~~~~~~~~~~~~~~~~~~v~~G~~~-~~~~~~~~G~~G~is~~~ 208 (292)
... +.|+--=.+ ..|++.+.+.+...+-.+.+-+|... .+-+.+. -++|++.|++
T Consensus 169 ~~~~aDaiivTG~~TG~~~~~~~l~~vk~~~~~PvlvGSGvt~~Ni~~~l~-~ADG~IVGS~ 229 (254)
T pfam03437 169 ERGLADAVILSGKTTGGEVDLEELKLAKETVPVPVLVGSGVNLENLEELWS-IADGFIVGTS 229 (254)
T ss_pred HHCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHH-HCCEEEEEHH
T ss_conf 826898999787302799999999999962699889957989889999998-7899998422
No 172
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.08 E-value=0.59 Score=27.59 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=80.5
Q ss_pred ECCCCCCCCCCCCCCHHHH-HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-H
Q ss_conf 1120177389888689999-9999999976998999867232501089999999865431101234430036741027-8
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAF-VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT-R 83 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~-~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~-~ 83 (292)
+|..++++|- |+-+-..+ +++.+-.-+.|+. +..||.. ..+...+...-++.+.+. +...++++.++.... .
T Consensus 53 ~P~~I~AMTG-G~~~~~~iN~~LA~aA~~~gi~--m~vGSq~--~al~~~~~~~sf~vvR~~-~p~~~l~aNiga~~l~~ 126 (326)
T cd02811 53 APLLISAMTG-GSEKAKEINRNLAEAAEELGIA--MGVGSQR--AALEDPELAESFTVVREA-PPNGPLIANLGAVQLNG 126 (326)
T ss_pred CCEEEECCCC-CCHHHHHHHHHHHHHHHHCCCC--EEECCHH--HHHCCCCHHHHHHHHHHH-CCCCEEEEECCCHHHCC
T ss_conf 8758875557-9755658899999999981997--7834228--875392166567899875-88762786358033045
Q ss_pred HHHHHHHHH-HHCCCCCCCEECCCC----CC---CCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC
Q ss_conf 999975343-210244320012343----34---3178899999998753023301210011111211106899974320
Q gi|254780276|r 84 ESVELAQYA-HSIGADALLVVIPYY----NK---PNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY 155 (292)
Q Consensus 84 ~~i~~a~~a-~~~Gad~i~v~~P~~----~~---~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~ 155 (292)
...+.++++ +.++||++.+..-.- .+ .+-....+..+.+.+.+++||++=. +|+.|+.++..++. +.
T Consensus 127 ~~~~~~~~ai~~l~AdaL~iHlN~~QE~~~peGDr~f~~~~~~I~~l~~~~~vPVIvKe----VG~Gis~eda~~l~-~~ 201 (326)
T cd02811 127 YGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKE----VGFGISRETAKRLA-DA 201 (326)
T ss_pred CCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE----CCCCCCHHHHHHHH-HC
T ss_conf 68999999998557885786446065400789898777899999999984799858852----47899999999999-67
Q ss_pred CHHHHHH
Q ss_conf 3023310
Q gi|254780276|r 156 PNIVGVK 162 (292)
Q Consensus 156 pni~giK 162 (292)
+ |.+|-
T Consensus 202 G-v~~Id 207 (326)
T cd02811 202 G-VKAID 207 (326)
T ss_pred C-CCEEE
T ss_conf 9-99999
No 173
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=91.07 E-value=1.5 Score=24.66 Aligned_cols=166 Identities=19% Similarity=0.170 Sum_probs=87.2
Q ss_pred CCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCC
Q ss_conf 30011120177389888689999999999997699899986723250108999999986543110123-44300367410
Q gi|254780276|r 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGSN 80 (292)
Q Consensus 2 ~~Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~~ 80 (292)
++|+|.. ||=. .+...+...++..++.|++-+-+=- -.++.+|+.++.+.+.+.+.. .+++++.-
T Consensus 6 ~~glYlI--T~~~----~~~~~~~~~~~~~l~~Gv~~vQlR~-----K~~~~~~~~~~a~~l~~i~~~~~~~liINd--- 71 (210)
T PRK00043 6 LLGLYLI--TDSR----DSTGDLLEVVEAALAGGVTLVQLRE-----KGADARERLELARALKALCRRYGVPLIVND--- 71 (210)
T ss_pred CCEEEEE--ECCC----CCCCCHHHHHHHHHHCCCCEEEECC-----CCCCHHHHHHHHHHHHHHHHHHCCEEEECC---
T ss_conf 0808999--1985----3455499999999986999999926-----998999999999999999998099599768---
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 27899997534321024432001234334317889999999875302330121001111121110689997432030233
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
+. +.|.+.|+||+-+.. ++ .-....+++. +-..++- ..++ +.+.+.+-.+.-...++
T Consensus 72 ~~-------~lA~~~~adGvHLgq------~d-~~~~~~r~~l---~~~~iiG---~S~h---~~~e~~~A~~~gaDYi~ 128 (210)
T PRK00043 72 RV-------DLALAVGADGVHLGQ------DD-LPVADARAIL---GPDAIIG---VSTH---TLEEAAAAAAAGADYVG 128 (210)
T ss_pred HH-------HHHHHHCCCEEECCC------CC-CCHHHHHHHC---CCCCEEE---EECC---CHHHHHHHHHHCCCEEE
T ss_conf 89-------999871999897698------87-6899999751---9887899---8479---99999999882898388
Q ss_pred H--------HC-CC--CCHHHHHHHHHHCCCCEEECCCC-CCCHHHHHHHCCCCCC
Q ss_conf 1--------00-12--21135899997359840320132-2100124320334455
Q gi|254780276|r 161 V--------KD-AT--GKIELVSEQRLSCGFDFIQLSGE-DSSALGFNAHGGVGCI 204 (292)
Q Consensus 161 i--------K~-~~--~~~~~~~~~~~~~~~~~~v~~G~-~~~~~~~~~~G~~G~i 204 (292)
+ |. .. -.++.+.++.+..+-.+..+.|- ...+-.....|++|+-
T Consensus 129 ~Gpvf~T~tK~~~~~~~g~~~l~~~~~~~~iPvvAIGGI~~~ni~~~~~~Ga~giA 184 (210)
T PRK00043 129 VGPIFPTPTKKDAKPAVGLELLREAREAIDIPIVAIGGITPENAAEVLEAGADGVA 184 (210)
T ss_pred ECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCEEE
T ss_conf 74521479888887778999999999847999899808899999999980999999
No 174
>pfam01884 PcrB PcrB family. This family contains proteins that are related to PcrB. The function of these proteins is unknown.
Probab=90.99 E-value=1.5 Score=24.61 Aligned_cols=176 Identities=18% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77389888689999999999997699899986723250108999999986543110123443003674102789999753
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQ 90 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~ 90 (292)
|-.|.|-++..+. ++...++|.|.|+++||++- -+.++..+.++.. -.+|++.=.++.+.
T Consensus 12 ~liDPdk~~~~~~----~~~~~~sgtDaI~VGGS~~~---~~~d~~v~~ik~~-----~~lPviLfPg~~~~-------- 71 (231)
T pfam01884 12 TLLDPDETNPEEI----IEIVAESGTDAIMIGGSTGG---VTLDNVVRLIKKV-----YGLPIILFPGNPSG-------- 71 (231)
T ss_pred EEECCCCCCCHHH----HHHHHHCCCCEEEECCCCCC---CCHHHHHHHHHHH-----CCCCEEEECCCHHH--------
T ss_conf 8878999996999----99999749999998898888---5689999999985-----39998995698676--------
Q ss_pred HHHHCCCCCCCEE------CCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEECHHHC-C----C---CCCHHHHHHHHHHC
Q ss_conf 4321024432001------2343343178899999998753-02330121001111-1----2---11106899974320
Q gi|254780276|r 91 YAHSIGADALLVV------IPYYNKPNRRGLLAHFGEIATT-VSSPIYIYNNPSRT-V----I---EMDVDTMAELAATY 155 (292)
Q Consensus 91 ~a~~~Gad~i~v~------~P~~~~~~~~~i~~~~~~i~~~-~~~pi~iYn~P~~~-g----~---~~~~~~l~~L~~~~ 155 (292)
-.-+||+++++ -|+|.-..+-+-...+++.... .+..-++-| |..+ + . +++.+.+.....--
T Consensus 72 --vs~~aDailf~sllNs~np~~lig~qv~aa~~~~~~~~e~ip~gYivi~-~g~~v~~vs~a~~i~~~~~~iaa~~alA 148 (231)
T pfam01884 72 --VSRYADAIFFMSLLNSANPDWIVGAHALGAQTVKKIGEEIIPMGYIVVE-PDSKVGWVGEARPIPRNKPDIAAYYALA 148 (231)
T ss_pred --CCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC-CCCCEEEEECCEECCCCCHHHHHHHHHH
T ss_conf --5867784665641048990567627998899876505005303678875-9971366436623799959999999999
Q ss_pred CHHHHHH----CC-CCCH----HHHHHHHHHCCCCEEECCC-CC--CCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 3023310----01-2211----3589999735984032013-22--1001243203344552222321
Q gi|254780276|r 156 PNIVGVK----DA-TGKI----ELVSEQRLSCGFDFIQLSG-ED--SSALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 156 pni~giK----~~-~~~~----~~~~~~~~~~~~~~~v~~G-~~--~~~~~~~~~G~~G~is~~~n~~ 211 (292)
.+.-|+| |+ ||.. ..+.+..+...+-..++.| -. +........|++-.+. ||++
T Consensus 149 ~~~~g~~~iYLEaGSGa~~~vp~~vi~~~~~~~~~~LivGGGIrs~e~A~~~~~aGAD~IVv--Gn~i 214 (231)
T pfam01884 149 AKLLGMRIFYLEAGSGAPGPVPEEVIAVKKVLDDARLIVGGGIKSGEKAKEMARAGADVIVT--GNVI 214 (231)
T ss_pred HHHCCCCEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEE--CCCE
T ss_conf 99709818999758999999899999999646897689969979999999999779999997--9714
No 175
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.99 E-value=1.5 Score=24.61 Aligned_cols=60 Identities=15% Similarity=0.193 Sum_probs=31.1
Q ss_pred EECCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC-----CC----HHCCCHHHHHHHHHHHHHCC
Q ss_conf 111201773-89888689999999999997699899986723-----25----01089999999865431101
Q gi|254780276|r 5 SIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT-----GE----SSTLSHEEHCRIIELCVKTV 67 (292)
Q Consensus 5 i~~~~~TPf-~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t-----GE----~~~Ls~~Er~~~~~~~~~~~ 67 (292)
+++|+.+-+ ++||.+....+.-+-++ . .|+ |+.+.|.+ |. ...+..++...-++.+++.+
T Consensus 18 v~apm~~~~a~~dG~~t~~~~~yy~~r-A-gG~-GliIte~~~V~~~g~~~~~~~~i~~d~~i~~~k~l~~av 87 (353)
T cd04735 18 VMAPMTTYSSNPDGTITDDELAYYQRR-A-GGV-GMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAI 87 (353)
T ss_pred EEHHHCCCCCCCCCCCCHHHHHHHHHH-H-CCC-EEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 660003866467999999999999998-3-961-499989488861325789987647999999999999999
No 176
>PRK13134 consensus
Probab=90.98 E-value=1.5 Score=24.60 Aligned_cols=183 Identities=14% Similarity=0.087 Sum_probs=101.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|+|-+=++=-. .++. -.+.++-.+.++...+.. ++|++.
T Consensus 23 ~yitaG~P~~e~s~~~i~~l~~~GaDiiEiGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~~~~~--~~pivl 100 (257)
T PRK13134 23 PFLTAGFPTSERFWDELEALDAAGADIIEVGVPFSDPVADGPVVAAASQRALESGVTLRWIMDGLAARKGRL--RAGLVL 100 (257)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCEEE
T ss_conf 887070799799999999999779999997898888765589999999999967998789999999874468--999899
Q ss_pred CCCCCH--HHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 674102--7899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNN--TRESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~--~~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.--+. -...-++++.|+++|+||+++. .| .++ .+.|...+..-++..+..=.|. .+.+-+.+++
T Consensus 101 MtY~N~i~~yG~e~F~~~~~~aGvdGvIipDLP------~eE-~~~~~~~~~~~gi~~I~lvaPt-----t~~~Ri~~i~ 168 (257)
T PRK13134 101 MGYLNPFMQYGFERFVRDAADAGVAGCIIPDLP------LDE-DADLRALLAARGMDLIALVGPN-----TGEGRMREYA 168 (257)
T ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEECCCC------HHH-HHHHHHHHHHCCCCEEEECCCC-----CCHHHHHHHH
T ss_conf 853459997468999999986798759946999------778-8999999997598269963899-----9999999999
Q ss_pred HHCCHHHH---------HHCCCC-CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 32030233---------100122-11-3589999735984032013-221001243203344552222
Q gi|254780276|r 153 ATYPNIVG---------VKDATG-KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~g---------iK~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
+.-..+++ .|.... +. +.+.++++...-.+.+--| ....-...+..+++|++.|++
T Consensus 169 ~~s~gFIY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 236 (257)
T PRK13134 169 AVASGYVYVVSVMGTTGVRDGLPVEVADTLARARQCFSIPVALGFGISRPAQLEGLSHPPDAVIFGSA 236 (257)
T ss_pred HHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 62888089984355668764552889999999997069987998067999999999703999998799
No 177
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.91 E-value=1.5 Score=24.59 Aligned_cols=164 Identities=18% Similarity=0.126 Sum_probs=76.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9999999976998999867232501089999999865431101234430036741-027899997534321024432001
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS-NNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~-~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
.+++--..++|.=|++-.+ +++.++-++.++.+.+..+. |+=++... .+..+.-++.+.+.+.|++.|...
T Consensus 16 ~~LaaAvs~aGglG~l~~~------~~~~~~l~~~i~~~~~~~~~--pfgvnl~~~~~~~~~~~~~~~~~~~~v~~v~~~ 87 (236)
T cd04730 16 PELAAAVSNAGGLGFIGAG------YLTPEALRAEIRKIRALTDK--PFGVNLLVPSSNPDFEALLEVALEEGVPVVSFS 87 (236)
T ss_pred HHHHHHHHHCCCEEEECCC------CCCHHHHHHHHHHHHHHCCC--CEEECCCCCCCCCCHHHHHHHHHHCCCCEEEEC
T ss_conf 9999999968985585788------89999999999999974699--724433246776368999999997699999987
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHC-CHHHHHH-CCCC--------CHHHHHH
Q ss_conf 2343343178899999998753023301210011111211106899974320-3023310-0122--------1135899
Q gi|254780276|r 104 IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATY-PNIVGVK-DATG--------KIELVSE 173 (292)
Q Consensus 104 ~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~-pni~giK-~~~~--------~~~~~~~ 173 (292)
. . .+.++++.+++. .+.+ +.+. -+++..++..+.- +-|+..= ++.| .+.-+.+
T Consensus 88 ~----g-~p~~~v~~l~~~----g~~v-~~~v-------~s~~~A~~a~~~GaD~iv~qG~eAGGH~g~~~~~~~~lv~~ 150 (236)
T cd04730 88 F----G-PPAEVVERLKAA----GIKV-IPTV-------TSVEEARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPE 150 (236)
T ss_pred C----C-CCHHHHHHHHHC----CCEE-EEEC-------CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9----8-978999999982----9989-9958-------98999999998189989997777777889875556779999
Q ss_pred HHHHCCCCEEECCCC-C-CCHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 997359840320132-2-100124320334455222232110
Q gi|254780276|r 174 QRLSCGFDFIQLSGE-D-SSALGFNAHGGVGCISVTANVVPR 213 (292)
Q Consensus 174 ~~~~~~~~~~v~~G~-~-~~~~~~~~~G~~G~is~~~n~~P~ 213 (292)
+++..+-.+..-.|. + ..+...+.+|++|++.|+-+...+
T Consensus 151 v~~~~~ipviaAGGI~~g~~i~aal~lGA~gV~~GTrfl~t~ 192 (236)
T cd04730 151 VRDAVDIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred HHHHHCCCEEEECCCCCHHHHHHHHHHCCCEEEECCHHHHCC
T ss_conf 999829868965462778999999980897999553857084
No 178
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR006268 These sequences are one of at least three types of phospho-2-dehydro-3-deoxyheptonate aldolase (DAHP synthase). This enzyme catalyzes the first of 7 steps in the biosynthesis of chorismate, that last common precursor of all three aromatic amino acids and of PABA, ubiquinone and menaquinone. Some members of this family, including an experimentally characterised member from Bacillus subtilis, are bifunctional, with a chorismate mutase domain N-terminal to this region. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.; GO: 0016832 aldehyde-lyase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=90.87 E-value=0.43 Score=28.60 Aligned_cols=142 Identities=17% Similarity=0.152 Sum_probs=86.8
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCC
Q ss_conf 234430036-74102789999753432102443200------12343343178899999998753023301210011111
Q gi|254780276|r 68 ASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTV 140 (292)
Q Consensus 68 ~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g 140 (292)
.|..-|||| |+=.|-+++++.|+..+++||+-+== ..||-|..-.++=+.|.++.+|..++|++ |=
T Consensus 23 ~G~~~~iAGPCsvEs~eq~~~~A~~vk~~Ga~~LRGGAfKPRTSPYsFQGlg~~gl~~l~~A~~~~GL~~v-------TE 95 (262)
T TIGR01361 23 EGSPIVIAGPCSVESEEQIVETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRRAADETGLPVV-------TE 95 (262)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE-------EE
T ss_conf 84789986487748879999999999866740430663488888841247418999999999986099489-------88
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHH--HCCCCEEECCCC----CCCHH--HHHHHCC-CCCCCCCCCCC
Q ss_conf 211106899974320302331001221135899997--359840320132----21001--2432033-44552222321
Q gi|254780276|r 141 IEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRL--SCGFDFIQLSGE----DSSAL--GFNAHGG-VGCISVTANVV 211 (292)
Q Consensus 141 ~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~~--~~~~~~~v~~G~----~~~~~--~~~~~G~-~G~is~~~n~~ 211 (292)
+ |+++.+...+ ++ +=-+.-.+.|+.++.-+.. ..+..+..=-|. ++++. ++....+ ++-+ ++
T Consensus 96 v-md~~d~e~~~-~y--~D~lQiGARNmQNF~LL~~vG~~~KPVLLKRG~~aTi~EwL~AAEYIl~~GsN~~V-----iL 166 (262)
T TIGR01361 96 V-MDPRDVEIVA-EY--ADILQIGARNMQNFELLKEVGKQGKPVLLKRGMGATIEEWLEAAEYILSEGSNGNV-----IL 166 (262)
T ss_pred E-ECHHHHHHHH-HH--HHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCE-----EE
T ss_conf 6-3625677787-65--11342225412256999997223797553077215899999999999846889954-----89
Q ss_pred CCHHHHHHHHHCCC
Q ss_conf 10024444431178
Q gi|254780276|r 212 PRICAEFQQAMIRG 225 (292)
Q Consensus 212 P~~~~~l~~~~~~g 225 (292)
-|.-.+-|+..-..
T Consensus 167 CERGIRTfE~~TR~ 180 (262)
T TIGR01361 167 CERGIRTFEKSTRN 180 (262)
T ss_pred EECCCCCCCCHHHH
T ss_conf 97585676300245
No 179
>PRK13115 consensus
Probab=90.84 E-value=1.6 Score=24.51 Aligned_cols=205 Identities=14% Similarity=0.075 Sum_probs=113.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.++|+|-|=++=-. .++. -.|.+.-.++++...+ ..+|++.
T Consensus 28 ~yitaG~P~~e~t~~~i~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~f~~v~~~~~---~~~Pivl 104 (269)
T PRK13115 28 GYLPAGFPDVDTSIAAMTALVESGCDIVEVGLPYSDPVMDGPVIQAATEAALRGGVRVRDVFRAVEAISA---AGGRALV 104 (269)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCC---CCCCEEE
T ss_conf 7852738998999999999996699999979998885666899999999999779959999999998415---7998885
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 67410278--9999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNTR--ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~~--~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+..- ..-++++.|+++|+||+++.= +..+|- .-|...++..++..+.-=.|. -+.+-+.++++
T Consensus 105 M~Y~N~i~~yG~e~F~~~~~~~GvdGvIipD-----LP~eE~-~~~~~~~~~~gi~~I~LvaPt-----t~~eRi~~i~~ 173 (269)
T PRK13115 105 MTYWNPVLRYGVDRFARDLAAAGGAGLITPD-----LIPDEA-GEWLAASERHGLDRIFLVAPS-----STPERLAETVE 173 (269)
T ss_pred HHHHHHHHHHCHHHHHHHHHHCCCCEEECCC-----CCHHHH-HHHHHHHHHCCEEEEEEECCC-----CCHHHHHHHHH
T ss_conf 4754899873699999999973998076478-----997899-999999986581289985899-----98899999984
Q ss_pred HCCHHHHH---------HCC-CCCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 20302331---------001-2211-3589999735984032013-2210012432033445522223211002444443
Q gi|254780276|r 154 TYPNIVGV---------KDA-TGKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVPRICAEFQQA 221 (292)
Q Consensus 154 ~~pni~gi---------K~~-~~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~ 221 (292)
.-..+++. +.. ..+. ..+.++++...-.+.+--| ....-...+...++|.+.|++ +.+.
T Consensus 174 ~a~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~aDGvIVGSa---------~V~~ 244 (269)
T PRK13115 174 ASRGFVYAASTMGVTGARDAVSSAAPELVARVRAASDIPVCVGLGVSSAAQAAEIAGYADGVIVGSA---------LVSA 244 (269)
T ss_pred CCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHCCEEEECHH---------HHHH
T ss_conf 4888089975454567764441779999999997179981797278999999999802999998689---------9999
Q ss_pred HCCCCCHHHHHHHHHHHH
Q ss_conf 117882799999999999
Q gi|254780276|r 222 MIRGDYRQALLYQDKLMP 239 (292)
Q Consensus 222 ~~~gd~~~A~~l~~~l~~ 239 (292)
+.+++.++..++-..+..
T Consensus 245 i~~~g~~~v~~~~~el~~ 262 (269)
T PRK13115 245 LLDGGLPAVRALTEELAA 262 (269)
T ss_pred HHHCCHHHHHHHHHHHHH
T ss_conf 997597999999999999
No 180
>pfam01180 DHO_dh Dihydroorotate dehydrogenase.
Probab=90.82 E-value=1.6 Score=24.50 Aligned_cols=85 Identities=13% Similarity=0.106 Sum_probs=49.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE--ECCCCCC----CCHHHH-HHHHHHHH
Q ss_conf 8999999986543110123443003674102789999753432102443200--1234334----317889-99999987
Q gi|254780276|r 51 LSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV--VIPYYNK----PNRRGL-LAHFGEIA 123 (292)
Q Consensus 51 Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v--~~P~~~~----~~~~~i-~~~~~~i~ 123 (292)
...++..+-++...+....++||++++.+.+.+|-++.++..++. +|++-+ ..|..-. ..+.++ ....+.+.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~vi~si~g~~~~d~~~~~~~~~~~-ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~ 152 (290)
T pfam01180 74 PGLDAVLEELLKRRKEYPRPLGIILSKAGSTVEDYVEVARKIGPF-ADYLELNVSCPNTPGLRALQTDPELAAILLKVVK 152 (290)
T ss_pred CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHH-CCEEEEEEECCCCCCCHHHCCCHHHHHHHHHHHH
T ss_conf 307999999998777538885378624669999999999999743-5889999853688761334042989999999987
Q ss_pred HHHCCCCEEEECH
Q ss_conf 5302330121001
Q gi|254780276|r 124 TTVSSPIYIYNNP 136 (292)
Q Consensus 124 ~~~~~pi~iYn~P 136 (292)
+++++|+++==-|
T Consensus 153 ~~~~~Pv~vKlsp 165 (290)
T pfam01180 153 EVSKVPVLVKLAP 165 (290)
T ss_pred HCCCCCEEEEECC
T ss_conf 5047873898389
No 181
>PRK08185 hypothetical protein; Provisional
Probab=90.72 E-value=1.3 Score=25.04 Aligned_cols=190 Identities=12% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
-.|.+.++..++-.-+.+...|.-. +.+...++. .+....++..++. -.+||..+.-+... .+.++.|-++|.
T Consensus 20 v~~~e~~~avi~AAee~~sPvIiq~-s~~~~~~~g-~~~~~~~~~~a~~--~~VpV~lHLDH~~~---~e~~~~ai~~GF 92 (283)
T PRK08185 20 VADSCFLRAVVEEAEANNAPAIIAI-HPNELDFVG-DDFFAYVRERAQR--SPVPFVIHLDHGAS---VEDVMRAIRCGF 92 (283)
T ss_pred ECCHHHHHHHHHHHHHHCCCEEEEE-CCCHHHHHH-HHHHHHHHHHHHH--CCCCEEEECCCCCC---HHHHHHHHHCCC
T ss_conf 8999999999999999787989993-812887711-9999999999987--79989998999999---999999998299
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCC------CEEEECHHH-CC----CCCCHHHHHHHHH---------H
Q ss_conf 43200123433431788999999987530---233------012100111-11----2111068999743---------2
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTV---SSP------IYIYNNPSR-TV----IEMDVDTMAELAA---------T 154 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~p------i~iYn~P~~-~g----~~~~~~~l~~L~~---------~ 154 (292)
+-||+-.-.+ +-++=++--+++.+.+ +++ .+=.+--.. .+ ..-+|+...+..+ .
T Consensus 93 sSVM~DgS~l---p~eeNi~~Tk~vv~~ah~~gv~VEaElG~vg~~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 169 (283)
T PRK08185 93 TSVMIDGSLL---PYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSVEGGVSQIIYTDPEQAEDFVSRTGVDTLAVA 169 (283)
T ss_pred CEEEEECCCC---CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 8798638989---9999999999999999865983899862367768776666420004899999999998799978633
Q ss_pred CCHHHHH-HC---CCCCHHHHHHHHHHCCCCEEECCCCC---CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 0302331-00---12211358999973598403201322---100124320334455222232110024444431
Q gi|254780276|r 155 YPNIVGV-KD---ATGKIELVSEQRLSCGFDFIQLSGED---SSALGFNAHGGVGCISVTANVVPRICAEFQQAM 222 (292)
Q Consensus 155 ~pni~gi-K~---~~~~~~~~~~~~~~~~~~~~v~~G~~---~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~ 222 (292)
+.|+-|+ |. ..-|++++.++.+..+-.+.+-.|++ +.+-.....|.. =-|+..++-..+.+..
T Consensus 170 iGn~HG~Yk~~~~p~l~~~~l~~I~~~~~vPLVLHGgSG~~~e~i~~ai~~Gv~-----KiNi~T~l~~a~~~~~ 239 (283)
T PRK08185 170 IGTAHGIYPKDKKPKLQMDILKEINERVDIPLVLHGGSANPDAEIAESVTLGVG-----KINISSDMKYAFFQKV 239 (283)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCEE-----EEEECHHHHHHHHHHH
T ss_conf 255455557889842378999999986499989758999999999999986937-----9984867999999999
No 182
>PRK13119 consensus
Probab=90.70 E-value=1.6 Score=24.43 Aligned_cols=210 Identities=13% Similarity=0.056 Sum_probs=111.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.++|++-+=++=-. .++. -++.+.-.++++.+.+. ..++|++.
T Consensus 19 ~yltaG~P~~e~s~~~l~~l~~~GadiiElGiPFSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~ir~~-~~~~pivl 97 (261)
T PRK13119 19 PYITVGDPDIRTTLALMHGMVANGADILELGVPFSDPMADGPVIQRAAERALANGISLRDVLDVVRKFRET-DTQTPVVL 97 (261)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCCEEE
T ss_conf 88648389989999999999966999999789888866658999999999997799788999999986514-89989899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++.= +..++--+|+ +.++..++..+.-=.|. -+.+-+.++++
T Consensus 98 MtY~N~i~~yG~e~F~~~~~~~GvdGvIipD-----LP~ee~~~~~-~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~~ 166 (261)
T PRK13119 98 MGYLNPVHKMGYREFAQEAAKAGVDGVLTVD-----SPVETIDPLY-RELKDNGVDCIFLIAPT-----TTEDRIKTIAE 166 (261)
T ss_pred EECHHHHHHHHHHHHHHHHHHCCCCEEEECC-----CCHHHHHHHH-HHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 8403789886299999999975985798368-----9978879999-99997599764430799-----98999999997
Q ss_pred HCCHHH---------HHHCC-CCCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 203023---------31001-2211-3589999735984032013-2210012432033445522223211002444443
Q gi|254780276|r 154 TYPNIV---------GVKDA-TGKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVPRICAEFQQA 221 (292)
Q Consensus 154 ~~pni~---------giK~~-~~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~ 221 (292)
.-..++ |.+.. +.+. ..+.++++...-.+.+--| ....-...+..+++|++.|++ .++.++.
T Consensus 167 ~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa------iV~~i~~ 240 (261)
T PRK13119 167 LAGGFVYYVSLKGVTGAASLDTDEVSRKIEYLHQYIDIPIGVGFGISNAESARKIGRVADAVIVGSR------IVKEIEN 240 (261)
T ss_pred HCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEECHH------HHHHHHH
T ss_conf 2898199973666668775554889999999986369987998365999999998734999998289------9999986
Q ss_pred HCCCCCHHHHHHHHHHHHHHH
Q ss_conf 117882799999999999999
Q gi|254780276|r 222 MIRGDYRQALLYQDKLMPLHQ 242 (292)
Q Consensus 222 ~~~gd~~~A~~l~~~l~~l~~ 242 (292)
. ++ +++..+...+..+.+
T Consensus 241 ~--~~-~~~~~v~~~vk~lk~ 258 (261)
T PRK13119 241 N--AG-NEAAAVGALVKELKD 258 (261)
T ss_pred C--CC-CHHHHHHHHHHHHHH
T ss_conf 6--88-768999999999998
No 183
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=90.63 E-value=1.5 Score=24.53 Aligned_cols=130 Identities=14% Similarity=0.017 Sum_probs=71.5
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHCC-CCCCCE--E-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCC
Q ss_conf 44300367-4102789999753432102-443200--1-23433431788999999987530233012100111112111
Q gi|254780276|r 70 RVPVMAGI-GSNNTRESVELAQYAHSIG-ADALLV--V-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMD 144 (292)
Q Consensus 70 r~pii~gv-~~~~~~~~i~~a~~a~~~G-ad~i~v--~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~ 144 (292)
++.+...+ |+.+.+|++..+|.|.+.+ -++|-+ + -+.|..|+.-+.++--+.+++.-= -++-|-+ =+
T Consensus 69 ~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF-~VlPY~~-------dD 140 (262)
T COG2022 69 GVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGF-VVLPYTT-------DD 140 (262)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCC-------CC
T ss_conf 867678764558899999999999997069848999936876548875789999999986798-8850368-------87
Q ss_pred HHHHHHHHHHCCHHHHHHCC----C----CCHHHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf 06899974320302331001----2----21135899997359840320132--21001243203344552222
Q gi|254780276|r 145 VDTMAELAATYPNIVGVKDA----T----GKIELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 145 ~~~l~~L~~~~pni~giK~~----~----~~~~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~ 208 (292)
+-+.+||. +..-.+-+-.+ | .+...+..++....-.+.+=.|- .......|.+|+++.+..++
T Consensus 141 ~v~arrLe-e~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~aMElG~DaVL~NTA 213 (262)
T COG2022 141 PVLARRLE-EAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQAMELGADAVLLNTA 213 (262)
T ss_pred HHHHHHHH-HCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEHHHH
T ss_conf 89999998-64966863356656678675788999999973899889867989766889998605543232567
No 184
>PRK13117 consensus
Probab=90.34 E-value=1.7 Score=24.22 Aligned_cols=185 Identities=16% Similarity=0.141 Sum_probs=104.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|.-|.+...+.++-+.+.|+|-+=++=-. .++. -.+.+.-.++++.+.+.. ..+|++.
T Consensus 21 ~yitaG~P~~~~t~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~-~~~pivl 99 (268)
T PRK13117 21 PFVTLGDPSPELSLKIIDTLIEAGADALELGIPFSDPLADGPTIQNANLRALAAGVTPAQCFELLAKIRAKY-PTIPIGL 99 (268)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC-CCCCEEE
T ss_conf 887270899799999999999669998997899888565579999999999845996999999998850047-8987799
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++.= +..++- +-|...++..++..+.-=.|. -+.+-+.++++
T Consensus 100 M~Y~N~i~~~G~e~F~~~~~~aGvdGvIipD-----LP~eE~-~~~~~~~~~~gl~~I~lv~Pt-----t~~~Ri~~i~~ 168 (268)
T PRK13117 100 LLYANLVFANGIDNFYARCAEAGVDSVLIAD-----VPVEES-APFRQAAKKHGIAPIFICPPN-----ADDDTLRQIAS 168 (268)
T ss_pred EECCCHHHHCCHHHHHHHHHHCCCCEEEECC-----CCHHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 7326289871799999999976987798579-----997885-899999986798379984799-----99999999997
Q ss_pred HCCHHH---------HHHCCCC-CH-HHHHHHHHHCCCCEEECCC-CC-CCHHHHHHHCCCCCCCCCC
Q ss_conf 203023---------3100122-11-3589999735984032013-22-1001243203344552222
Q gi|254780276|r 154 TYPNIV---------GVKDATG-KI-ELVSEQRLSCGFDFIQLSG-ED-SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~---------giK~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~-~~~~~~~~~G~~G~is~~~ 208 (292)
.-..++ |.+.... +. +.+.++++...-.+.+--| .. ++.-..+..+++|++.|++
T Consensus 169 ~a~GFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSa 236 (268)
T PRK13117 169 LGRGYTYLLSRAGVTGAENKAAAPLNHLVEKLKEYNAPPPLQGFGISEPEQVKAAIKAGAAGAISGSA 236 (268)
T ss_pred HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 47985999836777889866627799999999964799869983789999999998638998998789
No 185
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=90.34 E-value=1.7 Score=24.21 Aligned_cols=25 Identities=12% Similarity=0.058 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8999999999999769989998672
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGT 44 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~ 44 (292)
|.+...+.++.++..||+||.+..+
T Consensus 67 d~~~q~~~i~~li~~~vdgiii~p~ 91 (295)
T PRK10653 67 NPAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 9999999999999769988998477
No 186
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=90.23 E-value=1.7 Score=24.15 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCEEC
Q ss_conf 99999997699899986723250108999999986543110123443003674102789999753432102-44320012
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIG-ADALLVVI 104 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~G-ad~i~v~~ 104 (292)
...+-+.+.| -|.++.||.++-.--. .++=++++..-+. .+---+|-.....+..++..+..+.-+ ..++-+..
T Consensus 27 ~~~~~~~~~g-~G~i~~ktvt~~pq~G-np~PR~~~l~~~~---~~iN~mG~~N~G~~~~~~~l~~~~~~~~~~~~~i~~ 101 (310)
T COG0167 27 EELDALAALG-FGAIVTKTVTPEPQEG-NPKPRLFRLPEDE---GLINRMGFNNPGADAFLEELKLAKYEGKPIGVNIGK 101 (310)
T ss_pred HHHHHHHHCC-CCEEEECCCCCCCCCC-CCCCEEEEECCCC---CHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 8999998557-8569966777777789-9998178715753---088754898652899999988640014776763488
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3433431788999999987530
Q gi|254780276|r 105 PYYNKPNRRGLLAHFGEIATTV 126 (292)
Q Consensus 105 P~~~~~~~~~i~~~~~~i~~~~ 126 (292)
- -..+++++..+|...+-+..
T Consensus 102 ~-~~~~~~~~~~d~~~~~~~~~ 122 (310)
T COG0167 102 N-KGGPSEEAWADYARLLEEAG 122 (310)
T ss_pred E-CCCCCHHHHHHHHHHHHHCC
T ss_conf 7-57885788999999997507
No 187
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=90.20 E-value=1.8 Score=24.14 Aligned_cols=31 Identities=16% Similarity=0.231 Sum_probs=24.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8886899999999999976998999867232
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTTG 46 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG 46 (292)
+.+-|.+...+.++.++.+|++||.+.....
T Consensus 36 ~~~~d~~~q~~~i~~~i~~~vDgIii~p~~~ 66 (277)
T cd06319 36 SAENSAKKELENLRTAIDKGVSGIIISPTNS 66 (277)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 6999999999999999966998799647774
No 188
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=90.07 E-value=1.8 Score=24.06 Aligned_cols=34 Identities=12% Similarity=0.176 Sum_probs=20.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 4300367410278999975343210244320012
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++=+.|+...|.++.++.++.+.++|..++++.|
T Consensus 39 I~sMPGv~R~sid~l~~~i~~~~~lGI~av~LF~ 72 (320)
T cd04824 39 IDSLPGINRYGVNRLEEFLRPLVAKGLRSVILFG 72 (320)
T ss_pred CCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7999996344899999999999987999799716
No 189
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=90.03 E-value=1.8 Score=24.04 Aligned_cols=107 Identities=19% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCCCCCCCCC--CCCHHHHHHHHHHHHHHCCCCCCCEECCC--CCCCCHHHHHHHHHHHHHHHC--CCCEEEECHHHCCC
Q ss_conf 2344300367--41027899997534321024432001234--334317889999999875302--33012100111112
Q gi|254780276|r 68 ASRVPVMAGI--GSNNTRESVELAQYAHSIGADALLVVIPY--YNKPNRRGLLAHFGEIATTVS--SPIYIYNNPSRTVI 141 (292)
Q Consensus 68 ~~r~pii~gv--~~~~~~~~i~~a~~a~~~Gad~i~v~~P~--~~~~~~~~i~~~~~~i~~~~~--~pi~iYn~P~~~g~ 141 (292)
..++|+++.. ...+.+++.+.++.+.+.|+.++-+-... -...+.++-++..+.|.++.+ ..+++=-| .+
T Consensus 124 r~~i~~y~s~~~~~~~~~~~~~~~~~~~~~Gf~~~K~k~g~~~~~~~~~~~di~~v~~ir~~~g~~~~l~vDaN---~~- 199 (357)
T cd03316 124 RDRVRVYASGGGYDDSPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDAN---GR- 199 (357)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCC---CC-
T ss_conf 57623677624789999999999999997699789853688864412699999999999998299956986576---55-
Q ss_pred CCCHHHHHHHHHHCC--HHHHHHCCC--CCHHHHHHHHHHCC
Q ss_conf 111068999743203--023310012--21135899997359
Q gi|254780276|r 142 EMDVDTMAELAATYP--NIVGVKDAT--GKIELVSEQRLSCG 179 (292)
Q Consensus 142 ~~~~~~l~~L~~~~p--ni~giK~~~--~~~~~~~~~~~~~~ 179 (292)
++++.-.++++.+. ++.-+-+-. .|++.+.++++..+
T Consensus 200 -~~~~~A~~~~~~l~~~~l~~iEqP~~~~d~~~~~~l~~~~~ 240 (357)
T cd03316 200 -WDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLARLRQATS 240 (357)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
T ss_conf -57999999999886544665058989557999999986289
No 190
>PRK09701 D-allose transporter subunit; Provisional
Probab=90.02 E-value=1.8 Score=24.03 Aligned_cols=50 Identities=12% Similarity=-0.041 Sum_probs=30.6
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 988868999999999999769989998672325010899999998654311012344300
Q gi|254780276|r 15 KGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM 74 (292)
Q Consensus 15 ~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii 74 (292)
.+.+=|.+...+.++.++.+|++||.+.-. +.+.-...++.+.+. .+||+
T Consensus 62 ~~~~~D~~~Qi~~Ie~~I~~gvdaIii~p~-------d~~a~~~~i~~A~~a---GIpVV 111 (311)
T PRK09701 62 SPSEGDFQSQLQLFEDLSNKNYKGIAFAPL-------SSVNLVMPVARAWKK---GIYLV 111 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHHC---CCCEE
T ss_conf 798789999999999999759999999189-------877889999999977---99189
No 191
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=89.92 E-value=1.4 Score=24.74 Aligned_cols=149 Identities=11% Similarity=0.054 Sum_probs=64.7
Q ss_pred HCCCCEEEECCCCCCHHCCCHHHHHHHHHHH-HHC-CCCCCC----CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE-CC
Q ss_conf 7699899986723250108999999986543-110-123443----0036741027899997534321024432001-23
Q gi|254780276|r 33 TEGSGGLVPAGTTGESSTLSHEEHCRIIELC-VKT-VASRVP----VMAGIGSNNTRESVELAQYAHSIGADALLVV-IP 105 (292)
Q Consensus 33 ~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~-~~~-~~~r~p----ii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~-~P 105 (292)
...|||+.+..+. ..++|.+.+... +-. +-||.| =+.-|...+..-+...++|.-+.|..-|.++ .|
T Consensus 54 ~~~VDGvIl~~~~------~~d~~i~~L~~~~iP~V~igr~~~~~~~~~~Vd~Dn~~~~~~a~~hLi~~GhrrIa~i~g~ 127 (269)
T cd06287 54 ALDIDGAILVEPM------ADDPQVARLRQRGIPVVSIGRPPGDRTDVPYVDLQSAATARMLLEHLRAQGARQIALIVGS 127 (269)
T ss_pred HCCCCEEEEECCC------CCCHHHHHHHHCCCCEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 5879989990378------8977999999769999998987877899828966659999999999998799879999689
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH------HHHHHHHHHCC
Q ss_conf 433431788999999987530233012100111112111068999743203023310012211------35899997359
Q gi|254780276|r 106 YYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI------ELVSEQRLSCG 179 (292)
Q Consensus 106 ~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~------~~~~~~~~~~~ 179 (292)
... .+..+-.+-|++.+.+.++|...+..+...+..-..+...+|.+..|...+| .+..|. ....+.-...|
T Consensus 128 ~~~-~~~~~R~~gy~~a~~~~gl~~~~~~~~~~~~~~~g~~a~~~ll~~~~~~~AI-~~~nD~~A~g~l~al~~~Gl~VP 205 (269)
T cd06287 128 ARR-NSYLEAEAAYRAFAAEHGMPPVVLRVDEAGGEEAGYAACAQLLAQHPDLDAL-CVPVDAFAVGAVRAATELGRAVP 205 (269)
T ss_pred CCC-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCCEE-EEECHHHHHHHHHHHHHHCCCCC
T ss_conf 867-5899999999999987799984799768898599999999997179999779-98279999999999998588779
Q ss_pred CCEEECCCCC
Q ss_conf 8403201322
Q gi|254780276|r 180 FDFIQLSGED 189 (292)
Q Consensus 180 ~~~~v~~G~~ 189 (292)
.++++.+..|
T Consensus 206 ~DvsVvgfdD 215 (269)
T cd06287 206 DQLRVVTRYD 215 (269)
T ss_pred CCCEEEEECC
T ss_conf 8766998159
No 192
>pfam02679 ComA (2R)-phospho-3-sulfolactate synthase (ComA). In methanobacteria (2R)-phospho-3-sulfolactate synthase (ComA) catalyses the first step of the biosynthesis of coenzyme M from phosphoenolpyruvate (P-enolpyruvate). This novel enzyme catalyses the stereospecific Michael addition of sulfite to P-enolpyruvate, forming L-2-phospho-3-sulfolactate (PSL). It is suggested that the ComA-catalysed reaction is analogous to those reactions catalysed by beta-elimination enzymes that proceed through an enolate intermediate.
Probab=89.92 E-value=1.8 Score=23.98 Aligned_cols=164 Identities=16% Similarity=0.083 Sum_probs=68.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 8999999986543110123443003674102789-999753432102443200123433431788999999987530233
Q gi|254780276|r 51 LSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRE-SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 51 Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~-~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
|+..+-..+++.+.+.+.. +++=.|++....++ ..+..+.++++|+.-..=.+-+-....+..+-+|++. |......
T Consensus 23 l~~~~~eD~Le~~g~yID~-~K~g~gt~~l~p~~~l~eKI~l~~~~~V~v~~GGtlfE~a~~~~~~d~y~~~-~~~lGf~ 100 (245)
T pfam02679 23 LGPRFLEDLLESAGDYIDF-LKFGWGTSALMPEDILKEKIDLAHEHGVYVYTGGTLFEIAILQGKFDEYLRE-CKELGFD 100 (245)
T ss_pred CCHHHHHHHHHHHHHHEEE-EEECCCEEEECCHHHHHHHHHHHHHCCCEEECCCHHHHHHHHCCCHHHHHHH-HHHCCCC
T ss_conf 9989999999861333358-9976876501788999999999998599484796999999973839999999-9986998
Q ss_pred CEEEECHHHCCCCCCHHHHHHHHHHCCH-------HHHHHCCCCCHH-HHHHHHHHCCCCEEECCCCCCCHHHHHHHCCC
Q ss_conf 0121001111121110689997432030-------233100122113-58999973598403201322100124320334
Q gi|254780276|r 130 IYIYNNPSRTVIEMDVDTMAELAATYPN-------IVGVKDATGKIE-LVSEQRLSCGFDFIQLSGEDSSALGFNAHGGV 201 (292)
Q Consensus 130 i~iYn~P~~~g~~~~~~~l~~L~~~~pn-------i~giK~~~~~~~-~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G~~ 201 (292)
.+=-. ..-.+++.+...++.+..-. =+|-|+.+.+.. ...+.++.....+ =+|.+-.++++...|..
T Consensus 101 ~iEiS---dg~i~i~~~~~~~~I~~~~~~G~~v~~EvG~K~~~~~~~~~~~~~I~~~~~~L--eaGA~~ViiEarEsg~~ 175 (245)
T pfam02679 101 AIEIS---DGSIELPEEERLRLIRKAKKAGFKVLSEVGKKDPEADSELTPDELIEQIERDL--EAGADKVIIEARESGGV 175 (245)
T ss_pred EEEEC---CCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEEECCCCCCC
T ss_conf 89956---88446898999999999997899796641546754345679999999999999--76982899851014875
Q ss_pred CCCCCCCCCCCCHHHHHHHH
Q ss_conf 45522223211002444443
Q gi|254780276|r 202 GCISVTANVVPRICAEFQQA 221 (292)
Q Consensus 202 G~is~~~n~~P~~~~~l~~~ 221 (292)
|.+-..+++-.+...++.+.
T Consensus 176 Gi~~~~g~~r~~~i~~I~~~ 195 (245)
T pfam02679 176 GLYDSDGEVRTDLVEEILER 195 (245)
T ss_pred CCCCCCCCCHHHHHHHHHHH
T ss_conf 65088988718899999973
No 193
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=89.84 E-value=1.7 Score=24.27 Aligned_cols=130 Identities=13% Similarity=0.041 Sum_probs=70.9
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHCCC-CCCCE---ECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCC
Q ss_conf 4430036-741027899997534321024-43200---123433431788999999987530233012100111112111
Q gi|254780276|r 70 RVPVMAG-IGSNNTRESVELAQYAHSIGA-DALLV---VIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMD 144 (292)
Q Consensus 70 r~pii~g-v~~~~~~~~i~~a~~a~~~Ga-d~i~v---~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~ 144 (292)
++.++.. .|+.+.+|++..++.|.+++- ++|=+ .-|.|..|+.-+.++=-+.+.+.- --++-|-+ =+
T Consensus 137 ~~~~LPNTAGc~ta~eAvr~a~lARe~~~t~~iKLEVi~D~~tL~Pd~~etl~Aae~Lv~eG-F~VlpY~~-------dD 208 (327)
T PRK11840 137 KYTYLPNTAGCFTAEDAVRTLRLAREAGGWDLVKLEVLGDQKTLYPDMVETLKAAEVLVKEG-FQVMVYCS-------DD 208 (327)
T ss_pred CCEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCC-CEEEEEEC-------CC
T ss_conf 77799856577889999999999998559985899980797667998589999999999789-88988716-------98
Q ss_pred HHHHHHHHHHCCHHHHHHCC----C----CCHHHHHHHHHHCCCCEEECCCCC--CCHHHHHHHCCCCCCCCCC
Q ss_conf 06899974320302331001----2----211358999973598403201322--1001243203344552222
Q gi|254780276|r 145 VDTMAELAATYPNIVGVKDA----T----GKIELVSEQRLSCGFDFIQLSGED--SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 145 ~~~l~~L~~~~pni~giK~~----~----~~~~~~~~~~~~~~~~~~v~~G~~--~~~~~~~~~G~~G~is~~~ 208 (292)
+-+.+||. +..-.+-+-.+ | .|...+..++...+-.+.+=.|-. ......|.+|++|++..++
T Consensus 209 pv~akrLe-d~Gc~avMPlgsPIGSg~Gi~n~~~i~~i~e~~~vpvivDAGiG~pS~A~~aMElG~daVL~NTA 281 (327)
T PRK11840 209 PIAAKRLE-DAGAVAVMPLGAPIGSGLGIQNPYTIRLIVEGAKVPVLVDAGVGTASDAAVAMELGCDGVLMNTA 281 (327)
T ss_pred HHHHHHHH-HCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEHHHH
T ss_conf 68999998-75983886224523478886899999999973699789957989878999998636666663367
No 194
>PRK13121 consensus
Probab=89.82 E-value=1.9 Score=23.93 Aligned_cols=211 Identities=16% Similarity=0.094 Sum_probs=114.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|++...+.++-+.++|+|-+=++=-. .++. -.|.++-.++++...+. +..+|++.
T Consensus 21 ~y~taG~P~~~~s~~~~~~l~~~GaDiiElGiPfSDP~ADGPvIq~A~~rAL~~G~~~~~~~~~~~~~r~~-~~~~Pivl 99 (265)
T PRK13121 21 PFITAGDPDPAKTVELMHALVEGGADVIELGVPFSDPMADGPVIQRASERALAHGVSLRQVLAMVKEFRET-NQTTPVVL 99 (265)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCCEEE
T ss_conf 88707189989999999999976999999789889977658999999999997799846779999983103-79999898
Q ss_pred CCCCCHHH--HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 67410278--9999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNTR--ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~~--~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+... ..-++++.++++|+||+++.= +..+|-. -|...++..++..+.-=.|. -+.+-+.++++
T Consensus 100 M~Y~N~i~~yG~e~F~~~~~~aGvdGlIipD-----LP~eE~~-~~~~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~~ 168 (265)
T PRK13121 100 MGYANPIERMGYDAFAAAARAAGVDGVLVVD-----YPPEECE-EFAAKMRAAGIDPIFLLAPT-----STDERIAAVAR 168 (265)
T ss_pred EEHHHHHHHHHHHHHHHHHHHCCCCEEECCC-----CCHHHHH-HHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 6214599997199999999872987343489-----9989999-99999986599668995899-----98999999996
Q ss_pred HCCHHHHHH---CCCC-------CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 203023310---0122-------11-3589999735984032013-2210012432033445522223211002444443
Q gi|254780276|r 154 TYPNIVGVK---DATG-------KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVPRICAEFQQA 221 (292)
Q Consensus 154 ~~pni~giK---~~~~-------~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~ 221 (292)
....+++.= =.+| +. ..+.++++..+-.+.+--| ....-...+..+++|++.|++- ++.++
T Consensus 169 ~~~gFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~v~~~ADGvIVGSai------V~~i~- 241 (265)
T PRK13121 169 VASGYVYYVSLKGVTGAATLDVSSVAAKLPAIRSHVPLPVGVGFGIRDAATARAVAEVADAVVIGSRL------VQLIE- 241 (265)
T ss_pred HCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECHHH------HHHHH-
T ss_conf 28980999755556677756628899999999854799859976889899999998119999984899------99998-
Q ss_pred HCCCCCHH-HHHHHHHHHHHHHH
Q ss_conf 11788279-99999999999999
Q gi|254780276|r 222 MIRGDYRQ-ALLYQDKLMPLHQA 243 (292)
Q Consensus 222 ~~~gd~~~-A~~l~~~l~~l~~~ 243 (292)
+++.++ ..++.+.+..+.++
T Consensus 242 --~~~~e~~~~~v~~fi~~lk~a 262 (265)
T PRK13121 242 --QAPPERAAAALTDFLAELRAA 262 (265)
T ss_pred --HCCHHHHHHHHHHHHHHHHHH
T ss_conf --578576899999999999998
No 195
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=89.79 E-value=1.9 Score=23.91 Aligned_cols=128 Identities=15% Similarity=0.238 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654311012344300-----------3674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM-----------AGIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii-----------~gv~~~~~~~~i~ 87 (292)
-|.+.-++.++.+++.+|+|+.+.++. .+. +..+.++. .++|++ ..|...+.+-...
T Consensus 39 ~d~~~e~~~i~~l~~~~vDGiIi~~~~-----~~~-~~~~~l~~------~~iPvV~~~~~~~~~~~~~V~~Dn~~~~~~ 106 (268)
T cd01575 39 YSPEREEELLRTLLSRRPAGLILTGLE-----HTE-RTRQLLRA------AGIPVVEIMDLPPDPIDMAVGFSHAEAGRA 106 (268)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC-----CCH-HHHHHHHH------CCCCEEEECCCCCCCCCCEEECCHHHHHHH
T ss_conf 998999999999995699999994377-----998-99999997------799699848868888885897388999999
Q ss_pred HHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCC---CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 75343210244320012-3433431788999999987530233---01210011111211106899974320302331
Q gi|254780276|r 88 LAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSP---IYIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~p---i~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
.+++..+.|..-+.++. |.-...+.+ -.+-|++.....+++ .+.++.+. ...-..+.+.++.+..|.+.+|
T Consensus 107 a~~~L~~~G~~~i~~i~~~~~~~~~~~-R~~G~~~al~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~dai 181 (268)
T cd01575 107 MARHLLARGYRRIGFLGARMDDTRAQQ-RLEGFRAALRAAGLDPPLVVTTPEPS--SFALGRELLAELLARWPDLDAV 181 (268)
T ss_pred HHHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHHHHHCCCCCCEEEEECCCC--CHHHHHHHHHHHHHCCCCCCEE
T ss_conf 999999749976999848988736999-99999999997698988089954899--8899999999999569998379
No 196
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=89.78 E-value=0.6 Score=27.53 Aligned_cols=113 Identities=20% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEC-------CCCCCHHCCCHHHHHHHHHHH-----------------------HH---
Q ss_conf 689999999999997699899986-------723250108999999986543-----------------------11---
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPA-------GTTGESSTLSHEEHCRIIELC-----------------------VK--- 65 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~-------G~tGE~~~Ls~~Er~~~~~~~-----------------------~~--- 65 (292)
-..+.+.+.++.+-+.|.+.-.+- |-.|+-..+..+.-.. +..+ ++
T Consensus 8 a~~~~i~~v~~~~~~~g~~~~~~~G~~~tiig~iGd~~~~~~~~~~~-l~~Ve~v~~i~~pykl~sr~~~~~~t~i~v~~ 86 (335)
T PRK08673 8 ATEEEIDEVIERIESLGLKAHPSKGKERTIIGLIGDTGKVDAAKFEA-LPGVEEVVPVLKPYKLASREFKPEPTIVKVGD 86 (335)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCCCCCHHHHHC-CCCCEEEEECCCCCEECCCCCCCCCCEEEECC
T ss_conf 99999999999999769812682588628999989876558777744-97741786548753101266488897799799
Q ss_pred --CCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf --01234430036-74102789999753432102443200------123433431788999999987530233012
Q gi|254780276|r 66 --TVASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 66 --~~~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
.-++...+|+| |+-.|-++.++.|+..+++|++.+-- ..||-|...-++=.++.+++.+.+++|++-
T Consensus 87 ~~iGg~~~~iiAGPCsvEs~eq~~~~A~~vk~~ga~~lRgGa~KPRTsPysFqGlg~eGL~~L~~~~~e~GlpvvT 162 (335)
T PRK08673 87 VEIGGGKPVVIAGPCSVESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPIVT 162 (335)
T ss_pred EEECCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEE
T ss_conf 9988985369961786787999999999999779968806665789998541455166999999999986995289
No 197
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=89.76 E-value=1.2 Score=25.40 Aligned_cols=133 Identities=21% Similarity=0.231 Sum_probs=89.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEC----------CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHH
Q ss_conf 689999999999997699899986----------723250108999999986543110123443003----674102789
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPA----------GTTGESSTLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRE 84 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~----------G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~ 84 (292)
=|.+.+.+-.+.+.+.|+++|=++ +..|-+..-+.+.=.++++.+++.++ +||-+ |.. +.++
T Consensus 64 ~~p~~~~~aa~~~~~~g~d~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~v~~iv~~~~~~~~--ipVsvKiRlg~~--~~~~ 139 (231)
T cd02801 64 SDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWD--DEEE 139 (231)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCCHHHHHCHHHHHHHHHHHHHHCC--CCEEEEEEECCC--CHHH
T ss_conf 989999999998875399999983899969970898307876297899999999997569--947999970778--6347
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 999753432102443200123433-431788999999987530233012100111112111068999743203023310
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYN-KPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK 162 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~-~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK 162 (292)
+.++++.+++.|++++.|.+-.-. +.+..-=.++++++.+..++|++. .|-..+.+...++.+. -++-|+=
T Consensus 140 ~~~~~~~l~~~G~~~ltvH~Rt~~q~~~~~a~~e~i~~~~~~~~ipvi~------NGdI~s~~d~~~~~~~-tg~dgvM 211 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPVIA------NGDIFSLEDALRCLEQ-TGVDGVM 211 (231)
T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHCCCCCCCHHHHHHHHHCCCCEEEE------ECCCCCHHHHHHHHHH-HCCCEEE
T ss_conf 9999999997699899983561441467762269999998659977998------3890999999999985-0999999
No 198
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=89.45 E-value=2 Score=23.73 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=57.6
Q ss_pred HHHHHCCCCEEEECCCCCCH-------HCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99997699899986723250-------108999999986543110123443003----6741027899997534321024
Q gi|254780276|r 29 EWQITEGSGGLVPAGTTGES-------STLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 29 ~~l~~~gv~gi~~~G~tGE~-------~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
..+.+.|+|.++|+.|.|-. ...|.+|-..-.+.|+..++. ..+|+ |.. .+.+++++.++...+.||
T Consensus 26 ~~~~~agvD~iLVGDSlgmv~~G~~~T~~vtld~mi~H~~aV~rg~~~-a~iv~DmPf~sy-~~~~~a~~na~~l~~~Ga 103 (240)
T cd06556 26 KQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPL-ALIVADLPFGAY-GAPTAAFELAKTFMRAGA 103 (240)
T ss_pred HHHHHCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC-CEEEEECCHHHC-CCHHHHHHHHHHHHHCCC
T ss_conf 999877998999806789830788677658999999999999747998-539983634423-899999999999998599
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 432001234334317889999999875302330121
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
|+|=+-. ..++.+..+.+.++ .+|+|-+
T Consensus 104 ~aVKlEg-------g~~~~~~i~~L~~~-gIpV~gH 131 (240)
T cd06556 104 AGVKIEG-------GEWHIETLQMLTAA-AVPVIAH 131 (240)
T ss_pred CEEEECC-------CHHHHHHHHHHHHC-CCCEEEE
T ss_conf 9899798-------75089999999987-9947976
No 199
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=89.43 E-value=2 Score=23.72 Aligned_cols=129 Identities=15% Similarity=0.134 Sum_probs=63.1
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999769989998672325010899999998654311012344300-----------3674102789999753432
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM-----------AGIGSNNTRESVELAQYAH 93 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii-----------~gv~~~~~~~~i~~a~~a~ 93 (292)
+...+.+.+..|+|+.+.++. .+.+...++.+. .+|+| ..|+..+-.-....+++.-
T Consensus 54 ~~~~~~l~~~~vdGiIi~~~~-----~~~~~~~~l~~~-------~iPvV~~d~~~~~~~~~~V~~d~~~a~~~~~~~L~ 121 (275)
T cd06295 54 DWLARYLASGRADGVILIGQH-----DQDPLPERLAET-------GLPFVVWGRPLPGQPYCYVGSDNVGGGRLATEHLL 121 (275)
T ss_pred HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHC-------CCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 999999984899889997998-----997999999957-------99999998626899997898287999999999999
Q ss_pred HCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCC---EEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH
Q ss_conf 1024432001234334317889999999875302330---12100111112111068999743203023310012211
Q gi|254780276|r 94 SIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPI---YIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI 168 (292)
Q Consensus 94 ~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi---~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~ 168 (292)
+.|..-+..+...-...+..+=.+.|++..+..++++ .++..+. ...--.+.+.++.+..|+..+| .++.|.
T Consensus 122 ~~G~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai-~~~nD~ 196 (275)
T cd06295 122 ARGRRRIAFLGGPQDMPEGEERLEGYREALAEAGLPLDPRLVAPGDF--TEESGRAAMRALLERGPDFDAV-FAASDL 196 (275)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCC--CHHHHHHHHHHHHHCCCCCCEE-EECCCH
T ss_conf 80998798705886672699999999999998699999417996577--6687999988898549998703-414758
No 200
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase family protein; InterPro: IPR005720 Dihydroorotate dehydrogenase (1.3.3.1 from EC) (DHOdehase) catalyzes the fourth step in the de novo biosynthesis of pyrimidine, the conversion of dihydroorotate into orotate. DHOdehase is a ubiquitous FAD flavoprotein. In bacteria (gene pyrD), DHOdease is located on the inner side of the cytosolic membrane. In some yeasts, such as in Saccharomyces cerevisiae (gene URA1, subfamily 2), it is a cytosolic protein while in other eukaryotes it is found in the mitochondria . This describes dihydroorotate dehydrogenases subfamily 1 that includes a number of uncharacterised proteins and a domain of dihydropyrimidine dehydrogenase.; GO: 0004158 dihydroorotate oxidase activity, 0006207 'de novo' pyrimidine base biosynthetic process, 0005737 cytoplasm.
Probab=89.37 E-value=0.3 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf 3344552222321100244444311788
Q gi|254780276|r 199 GGVGCISVTANVVPRICAEFQQAMIRGD 226 (292)
Q Consensus 199 G~~G~is~~~n~~P~~~~~l~~~~~~gd 226 (292)
.-.|-+||-+ +-|=..+-+||.+++=|
T Consensus 213 Nk~GGlSGPA-IKPiA~r~VYdly~~~d 239 (308)
T TIGR01037 213 NKTGGLSGPA-IKPIAVRMVYDLYKEVD 239 (308)
T ss_pred ECCCCCCCCC-CCCEEEEEHHHHHHHHC
T ss_conf 0458850750-14221210000477737
No 201
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=89.36 E-value=1.6 Score=24.42 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHH-HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 68999999999999769989998672325010899999-99865431101234430036741027899997534321024
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEH-CRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er-~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
.|.+.++..++-.-+.+..-|. .-+.|+..++...+. ..++....+..+-.+||..+.-+.+.++ +..|-+.|+
T Consensus 26 ~n~e~~~avi~AAee~~sPvIl-q~s~~~~~~~~~~~~~~~~~~~~~~~~~~~VPV~lHLDH~~~~~----~~~ai~~Gf 100 (293)
T PRK07315 26 NNLEWTQAILRAAEAKKAPVLI-QTSMGAAKYMGGYKVCKSLITNLVESMGITVPVAIHLDHGHYED----ALECIEVGY 100 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEE-EECHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH----HHHHHHCCC
T ss_conf 9999999999999997889999-90764887768677999999999997079988898889998289----999998299
Q ss_pred CCCCEEC
Q ss_conf 4320012
Q gi|254780276|r 98 DALLVVI 104 (292)
Q Consensus 98 d~i~v~~ 104 (292)
+-||+-.
T Consensus 101 tSVM~Dg 107 (293)
T PRK07315 101 TSIMFDG 107 (293)
T ss_pred CEEEEEC
T ss_conf 8799879
No 202
>PRK13116 consensus
Probab=89.34 E-value=2 Score=23.68 Aligned_cols=197 Identities=18% Similarity=0.157 Sum_probs=110.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC----CHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 73898886899999999999976998999867232----501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTG----ESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG----E~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|.-|.+...+.++-+.++|+|-+=++=-.+ ++. -.+.+.-.++++.+.+.. ..+|++.
T Consensus 21 ~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDP~ADGPvIQ~A~~rAL~~G~~~~~~~~~v~~ir~~~-~~~Pivl 99 (278)
T PRK13116 21 PFIMLSDPSPEEAFQIISTAIEAGADALELGVPFSDPVADGPTVAESHLRALDGGATVDSALEQIKRVRAAY-PEVPIGM 99 (278)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-CCCCEEE
T ss_conf 885484899899999999999669999997999888566689999999999976986789999999840358-9876899
Q ss_pred CCCCCH--HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 674102--789999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNN--TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~--~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+. ....-++++.|+++|+||+++.= +..+|- +-|...++..++..+. -.|.. -+.+-+.++++
T Consensus 100 M~Y~N~i~~~G~e~F~~~~~~aGvdGlIipD-----LP~eE~-~~~~~~~~~~~i~~I~-l~~pt----t~~~ri~~I~~ 168 (278)
T PRK13116 100 LIYGNVPFTRGLDRFYQEFAEAGADSILLPD-----VPVREG-APFSAAAAAAGIDPIY-IAPAN----ASEKTLEGVSA 168 (278)
T ss_pred EECCCHHHHCCHHHHHHHHHHCCCCEEEECC-----CCHHHH-HHHHHHHHHCCCCEEE-EECCC----CCHHHHHHHHH
T ss_conf 8057288772799999999776975899469-----997888-9999999865766699-93799----95999999997
Q ss_pred HCCHHH---------HH-HCCCCC-HH-HHHHHHHHCCCCEEECCCCC--CCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 203023---------31-001221-13-58999973598403201322--100124320334455222232110024444
Q gi|254780276|r 154 TYPNIV---------GV-KDATGK-IE-LVSEQRLSCGFDFIQLSGED--SSALGFNAHGGVGCISVTANVVPRICAEFQ 219 (292)
Q Consensus 154 ~~pni~---------gi-K~~~~~-~~-~~~~~~~~~~~~~~v~~G~~--~~~~~~~~~G~~G~is~~~n~~P~~~~~l~ 219 (292)
....++ |. ++.+.+ +. .+.++++..+-.+.+--|-. ++.-..+..+++|++.|++ +++++
T Consensus 169 ~s~GFiY~VS~~GvTG~~~~~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~aDGVIVGSA------iVk~I 242 (278)
T PRK13116 169 ASKGYIYAISRDGVTGTERESSTDGLSAVVDNIKKFDGAPILLGFGISSPQHVADAIAAGASGAITGSA------ITKII 242 (278)
T ss_pred HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHH------HHHHH
T ss_conf 189739998635222688666678999999999845799879981679899999998668999998779------99999
Q ss_pred HHHCCCC
Q ss_conf 4311788
Q gi|254780276|r 220 QAMIRGD 226 (292)
Q Consensus 220 ~~~~~gd 226 (292)
+...++.
T Consensus 243 e~~~~~~ 249 (278)
T PRK13116 243 ASHCEGE 249 (278)
T ss_pred HHCCCCC
T ss_conf 8527655
No 203
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=89.33 E-value=2 Score=23.67 Aligned_cols=134 Identities=16% Similarity=0.144 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543110123443003-----------674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMA-----------GIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~-----------gv~~~~~~~~i~ 87 (292)
-|.+.-++.++.+++.+|+|+.+.++. ++.+....+.+. .+|++. .|...+-.-...
T Consensus 39 ~~~~~e~~~l~~l~~~~vdGiIi~~~~-----~~~~~~~~l~~~-------~~PvV~i~~~~~~~~~~~V~~Dn~~~~~~ 106 (268)
T cd06270 39 HSAEKEREAIEFLLERRCDALILHSKA-----LSDDELIELAAQ-------VPPLVLINRHIPGLADRCIWLDNEQGGYL 106 (268)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHC-------CCCEEEECCCCCCCCCCEEEECHHHHHHH
T ss_conf 998999999999996599999995277-----998999999964-------99899986768999898898388999999
Q ss_pred HHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCC---EEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC
Q ss_conf 7534321024432001-234334317889999999875302330---121001111121110689997432030233100
Q gi|254780276|r 88 LAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPI---YIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD 163 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi---~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~ 163 (292)
.+++.-+.|..-+.++ .|.....+ .+=.+-|++..+..+++. .++.... + ..-..+.+.++.++.+.+.+| .
T Consensus 107 a~~~L~~~G~~~i~~i~~~~~~~~~-~~R~~Gf~~al~~~gl~~~~~~i~~~~~-~-~~~g~~~~~~ll~~~~~~~ai-~ 182 (268)
T cd06270 107 ATEHLIELGHRKIACITGPLTKEDA-RLRLQGYRDALAEAGIALDESLIIEGDF-T-EEGGYAAMQELLARGAPFTAV-F 182 (268)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEEECCC-C-HHHHHHHHHHHHHCCCCCCEE-E
T ss_conf 9999998399838984598888319-9999999999998599978004761677-6-788999889999569998745-5
Q ss_pred CCCCH
Q ss_conf 12211
Q gi|254780276|r 164 ATGKI 168 (292)
Q Consensus 164 ~~~~~ 168 (292)
+..|.
T Consensus 183 ~~nD~ 187 (268)
T cd06270 183 CANDE 187 (268)
T ss_pred ECCHH
T ss_conf 33779
No 204
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=89.29 E-value=2 Score=23.65 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=15.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 868999999999999769989998672
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGT 44 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~ 44 (292)
.-|.+...+.++.++..|++||++...
T Consensus 38 ~~d~~~Q~~~i~~~i~~~vDgIii~p~ 64 (273)
T cd06305 38 GGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999999999859999999468
No 205
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=89.27 E-value=2 Score=23.64 Aligned_cols=143 Identities=10% Similarity=0.103 Sum_probs=71.7
Q ss_pred CCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCC-----CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 98886899999999999976-998999867232501089999999865431101-----234430036741027899997
Q gi|254780276|r 15 KGNLIDEDAFVEHIEWQITE-GSGGLVPAGTTGESSTLSHEEHCRIIELCVKTV-----ASRVPVMAGIGSNNTRESVEL 88 (292)
Q Consensus 15 ~d~~iD~~~~~~~i~~l~~~-gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~-----~~r~pii~gv~~~~~~~~i~~ 88 (292)
.|..=|.+.-....+.|++. +|..++-..|++.......-++..++-...... ....+.+..+...+...+..+
T Consensus 50 ~Dd~~~p~~a~~~a~~Li~~d~V~~v~G~~ss~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~ 129 (347)
T cd06336 50 YDDKYDPAEAAANARRLVQQDGVKFILGPIGGGITAAQQITERNKVLLLTAYSSDLSIDTAGNPLTFRVPPIYNVYGVPF 129 (347)
T ss_pred ECCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHH
T ss_conf 25999989999999999861980899888862888878999964971540477785445788635998278567899998
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE-CHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 5343210244320012343343178899999998753023301210-011111211106899974320302331
Q gi|254780276|r 89 AQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYN-NPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 89 a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn-~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
+..+++.|..-+.++.+-+- --.+..+.|++..++.+..+.-.. +| ....++++. +.++.+.-|.++.+
T Consensus 130 ~~~~~~~g~k~vaii~~d~~--~G~~~~~~~~~~~~~~G~~vv~~~~~~-~g~~Df~~~-l~~i~~~~pD~v~~ 199 (347)
T cd06336 130 LAYAKKPGGKKVALLGPNDA--YGQPWVAAYKAAWEAAGGKVVSEEPYD-PGTTDFSPI-VTKLLAEKPDVIFL 199 (347)
T ss_pred HHHHHHCCCCEEEEEECCCC--HHHHHHHHHHHHHHHCCCEEEEEEECC-CCCCCHHHH-HHHHHHCCCCEEEE
T ss_conf 99888629978999923760--469999999998752597699999548-886677999-99999659699999
No 206
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=89.07 E-value=2.1 Score=23.54 Aligned_cols=107 Identities=8% Similarity=0.117 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHC--CCCCCC--CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543110--123443--0036741027899997534321
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKT--VASRVP--VMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~--~~~r~p--ii~gv~~~~~~~~i~~a~~a~~ 94 (292)
-|.+.-++.++.+++.+|+|+.+.++-+....-+.+...++.+.-.-. .+...+ -+..|...+..-....++|..+
T Consensus 39 ~~~~~e~~~l~~l~~~~vdGiIl~~~~~~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~Dn~~a~~~a~~~L~~ 118 (273)
T cd01541 39 NDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINASYEELNFPSLVLDDEKGGYKATEYLIE 118 (273)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECCHHHHHHHHHHHHH
T ss_conf 99899999999999659998999253103578777999999976998999956778899988997859999999999985
Q ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0244320012343343178899999998753
Q gi|254780276|r 95 IGADALLVVIPYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 95 ~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~ 125 (292)
.|..-+..+.+.-...+.+-...|.+.+.+.
T Consensus 119 ~G~~~i~~i~~~~~~~~~~R~~gf~~a~~~~ 149 (273)
T cd01541 119 LGHRKIAGIFKADDLQGVKRMKGFIKAYREH 149 (273)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 6996089981676310799999999999987
No 207
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=89.06 E-value=1.3 Score=25.16 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=14.2
Q ss_pred CHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0012432033445522223211
Q gi|254780276|r 191 SALGFNAHGGVGCISVTANVVP 212 (292)
Q Consensus 191 ~~~~~~~~G~~G~is~~~n~~P 212 (292)
.+...+.+|++|...|+.++..
T Consensus 198 ~i~AAlalGA~gVq~GT~Fl~t 219 (336)
T COG2070 198 GIAAALALGADGVQMGTRFLAT 219 (336)
T ss_pred HHHHHHHHCCHHHHHHHHHHCC
T ss_conf 9999998441685541254214
No 208
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=89.03 E-value=2 Score=23.72 Aligned_cols=177 Identities=15% Similarity=0.097 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCC
Q ss_conf 99999999999769989998672325010899999998654311012344300367410278999-97534321024432
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESV-ELAQYAHSIGADAL 100 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i-~~a~~a~~~Gad~i 100 (292)
+....+++-+.+.|.+++.+..... ...-...+..+.++.+.+.. ..|+.+...-+.+.... ..++.+.+.|+|++
T Consensus 12 ~~~~E~a~~~~~aGa~~i~~~~~~~-~~~~~~~~~~~~i~~~~~~t--~~P~~v~~~~~~~~~~~~~~~~~~~~~g~d~v 88 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSS-DPEEAETDDKEVLKEVAAET--DLPLGVQLAINDAAAAVDIAAAAARAAGADGV 88 (200)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCC-CHHHHHHHHHHHHHHHHHHC--CCCEEEEEECCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 7899999999868873688648879-82461699999999999707--99879984205666677599999998399989
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC-------CCCHHHHH
Q ss_conf 00123433431788999999987530-23301210011111211106899974320302331001-------22113589
Q gi|254780276|r 101 LVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA-------TGKIELVS 172 (292)
Q Consensus 101 ~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~-------~~~~~~~~ 172 (292)
.+..-.. ...++..++++++.++. +.+++..-.|.... ......++.-+.=.+.+.-.+ ..+.....
T Consensus 89 ~i~~~~~--~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~---~~~~a~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~ 163 (200)
T cd04722 89 EIHGAVG--YLAREDLELIRELREAVPDVKVVVKLSPTGEL---AAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLI 163 (200)
T ss_pred EECCCCC--CCCCCHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHCCCCEEEECCCCCCCCCCCCCCHHHHHHH
T ss_conf 9789996--54300689999999844896499968999999---999999809979997087467888766611689999
Q ss_pred HHHHHCCCCEEECCCC-C-CCHHHHHHHCCCCCCCC
Q ss_conf 9997359840320132-2-10012432033445522
Q gi|254780276|r 173 EQRLSCGFDFIQLSGE-D-SSALGFNAHGGVGCISV 206 (292)
Q Consensus 173 ~~~~~~~~~~~v~~G~-~-~~~~~~~~~G~~G~is~ 206 (292)
+.....+-.+..-.|. + +.+...+..|++|++-|
T Consensus 164 ~~~~~~~ipvi~~gGi~~~~~~~~~~~~gAdgv~vG 199 (200)
T cd04722 164 LAKRGSKVPVIAGGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 999857999899758799999999998599889818
No 209
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=88.97 E-value=2.1 Score=23.50 Aligned_cols=115 Identities=14% Similarity=0.182 Sum_probs=65.8
Q ss_pred CCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCCCCEECCC---CCCCCHHHHHHHHHHHHHHHC--CCCEEEECHHHC
Q ss_conf 0123443003-6741027899997534321024432001234---334317889999999875302--330121001111
Q gi|254780276|r 66 TVASRVPVMA-GIGSNNTRESVELAQYAHSIGADALLVVIPY---YNKPNRRGLLAHFGEIATTVS--SPIYIYNNPSRT 139 (292)
Q Consensus 66 ~~~~r~pii~-gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~---~~~~~~~~i~~~~~~i~~~~~--~pi~iYn~P~~~ 139 (292)
...+++|+++ +....+.++..+.++.+.+.|+.++-+-.++ -...+-+.-.+..+.+.++.+ ..+++= .
T Consensus 104 ~~r~~i~~Yas~~~~~~~~~~~~~a~~~~~~Gf~~~Kik~g~~p~~~~~~~~~d~~~v~avr~~~G~~~~l~vD-----~ 178 (341)
T cd03327 104 RTRDKIPAYASGLYPTDLDELPDEAKEYLKEGYRGMKMRFGYGPSDGHAGLRKNVELVRAIREAVGYDVDLMLD-----C 178 (341)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECC-----C
T ss_conf 87676026785278999999999999999839987997157788750445999999999999983999669703-----5
Q ss_pred CCCCCHHHHHHHHHHCC--HHHHHHCCC--CCHHHHHHHHHHCCCCEEECCC
Q ss_conf 12111068999743203--023310012--2113589999735984032013
Q gi|254780276|r 140 VIEMDVDTMAELAATYP--NIVGVKDAT--GKIELVSEQRLSCGFDFIQLSG 187 (292)
Q Consensus 140 g~~~~~~~l~~L~~~~p--ni~giK~~~--~~~~~~~~~~~~~~~~~~v~~G 187 (292)
+..++.+.-.++++.++ ++.-+-+.. .|+..+.++++..+ +-+..|
T Consensus 179 n~~~~~~~A~~~~~~l~~~~~~w~EeP~~~~d~~~~~~l~~~~~--ipIa~g 228 (341)
T cd03327 179 YMSWNLNYAIKMARALEKYELRWIEEPLIPDDIEGYAELKKATG--IPISTG 228 (341)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCC--CCEEEC
T ss_conf 55899999999977641046013646899678999999873099--989809
No 210
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=88.92 E-value=2.2 Score=23.47 Aligned_cols=92 Identities=10% Similarity=-0.029 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEECHHHCCCCCCHHHHHHHHHHCCH-
Q ss_conf 27899997534321024432001234334317889999999875302--330121001111121110689997432030-
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS--SPIYIYNNPSRTVIEMDVDTMAELAATYPN- 157 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~--~pi~iYn~P~~~g~~~~~~~l~~L~~~~pn- 157 (292)
+.++..+.++.+.+.|+.++-+-++. ..+.++-.+..+.+.++.. ..+++ +. +..++.+.-.++++.+..
T Consensus 143 ~~e~~~~~a~~~~~~Gf~~~K~k~~~--~~~~~~d~~~v~avReavG~d~~l~v-Da----n~~~~~~~Ai~~~~~le~~ 215 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWG--PGVVRRDLKACLAVREAVGPDMRLMH-DG----AHWYSRADALRLGRALEEL 215 (368)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC--CCCHHHHHHHHHHHHHHHCCCEEEEE-CC----CCCCCHHHHHHHHHHHCCC
T ss_conf 99999999999997699899865898--97689999999999997389708987-68----5455478899987643346
Q ss_pred -HHHHHCCC--CCHHHHHHHHHHCC
Q ss_conf -23310012--21135899997359
Q gi|254780276|r 158 -IVGVKDAT--GKIELVSEQRLSCG 179 (292)
Q Consensus 158 -i~giK~~~--~~~~~~~~~~~~~~ 179 (292)
+.-+-+.. .|.+.+.++++..+
T Consensus 216 ~~~w~EeP~~~~d~~~~~~l~~~~~ 240 (368)
T cd03329 216 GFFWYEDPLREASISSYRWLAEKLD 240 (368)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHCC
T ss_conf 5157517998447999999996099
No 211
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=88.89 E-value=2.2 Score=23.46 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=34.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHH-HHCC-CCC---CCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 89999999999997699899986723250108999999986543-1101-234---430036741027899997534321
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELC-VKTV-ASR---VPVMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~-~~~~-~~r---~pii~gv~~~~~~~~i~~a~~a~~ 94 (292)
|.+..+..++.+.+.+|+|+.+.+.. +.+...+.+... .-.+ -+| -+-+..|+..+..-+-..++|.-+
T Consensus 99 ~~~~e~~~~~~l~~~~vdGiIi~~~~------~~~~~~~~l~~~~~P~V~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~ 172 (333)
T COG1609 99 DPEKEREYLETLLQKRVDGLILLGER------PNDSLLELLAAAGIPVVVIDRSPPGLGVPSVGIDNFAGAYLATEHLIE 172 (333)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHCCCCEEEEECCCCCCCCCEEECCHHHHHHHHHHHHHH
T ss_conf 86999999999987698989993587------880889999865999899937677778977970989999999999998
Q ss_pred CCCCCCCEE
Q ss_conf 024432001
Q gi|254780276|r 95 IGADALLVV 103 (292)
Q Consensus 95 ~Gad~i~v~ 103 (292)
.|..-+.++
T Consensus 173 ~G~~~i~~i 181 (333)
T COG1609 173 LGHRRIAFI 181 (333)
T ss_pred CCCCEEEEE
T ss_conf 799859999
No 212
>KOG2335 consensus
Probab=88.79 E-value=2.2 Score=23.41 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 01773898886899999999999976998999867232501089999999865431101234430036741027899997
Q gi|254780276|r 9 LITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVEL 88 (292)
Q Consensus 9 ~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~ 88 (292)
++.|+-+. -+..+|.+++.+ |++-+|..--..+-+.-+..-|..-+.. ..+.-|+|++.++++.+...+-
T Consensus 22 i~APMvd~---S~l~fR~L~R~y---~~~l~yTpMi~a~~fv~~ek~r~~~~st----~~~D~PLIvQf~~ndp~~ll~A 91 (358)
T KOG2335 22 IVAPMVDY---SELAFRRLVRLY---GADLLYTPMIHAKTFVHSEKYRDSELST----SPEDRPLIVQFGGNDPENLLKA 91 (358)
T ss_pred CCCCCCCC---CHHHHHHHHHHH---CCCEEECHHHHHHHHHCCCCCHHHHCCC----CCCCCCEEEEECCCCHHHHHHH
T ss_conf 54772446---278999999996---8765722478888874174210001136----8777866999747998999999
Q ss_pred HHHHHHCCCCCCCE---ECCCCCC---------CCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCC--CHHHHHHHHHH
Q ss_conf 53432102443200---1234334---------3178899999998753023301210011111211--10689997432
Q gi|254780276|r 89 AQYAHSIGADALLV---VIPYYNK---------PNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEM--DVDTMAELAAT 154 (292)
Q Consensus 89 a~~a~~~Gad~i~v---~~P~~~~---------~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~--~~~~l~~L~~~ 154 (292)
|+.++..+ |+|=+ .|+.+.+ ...+-+-+-.+.+.+.++.|+-+= -+.+.++ +.+..+.+. +
T Consensus 92 a~lv~~y~-D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~K---IRI~~d~~kTvd~ak~~e-~ 166 (358)
T KOG2335 92 ARLVQPYC-DGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVK---IRIFVDLEKTVDYAKMLE-D 166 (358)
T ss_pred HHHHHHHC-CCCCCCCCCCHHHHHCCCCCCEECCCHHHHHHHHHHHHHHCCCCEEEE---EEECCCHHHHHHHHHHHH-H
T ss_conf 99865334-720415899878884377260002388999999999985259986999---985576787899999998-6
Q ss_pred CC--------H---HHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCH---HHHHH-HCCCCCCCCCCCC
Q ss_conf 03--------0---23310012211358999973598403201322100---12432-0334455222232
Q gi|254780276|r 155 YP--------N---IVGVKDATGKIELVSEQRLSCGFDFIQLSGEDSSA---LGFNA-HGGVGCISVTANV 210 (292)
Q Consensus 155 ~p--------n---i~giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~---~~~~~-~G~~G~is~~~n~ 210 (292)
-+ + -.|.|-..-|++.+..+++..++--.+.+|+=... ...+. -|++|.+++-|++
T Consensus 167 aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL 237 (358)
T KOG2335 167 AGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIANGNILSLEDVERCLKYTGADGVMSARGLL 237 (358)
T ss_pred CCCCEEEEECCCHHHCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHCCCEEEECCHHH
T ss_conf 79868999365577628888876779999999747677089508857689999999975874688600000
No 213
>TIGR00574 dnl1 DNA ligase I, ATP-dependent (dnl1); InterPro: IPR000977 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination ,. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold , . ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006260 DNA replication, 0006281 DNA repair, 0006310 DNA recombination.
Probab=88.76 E-value=0.75 Score=26.81 Aligned_cols=93 Identities=24% Similarity=0.268 Sum_probs=71.1
Q ss_pred CEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCC-CHHHHHHHHHHHHHHCCCCCCCE---ECC-CCCCC
Q ss_conf 899986723250108999999986543110123-4430036741-02789999753432102443200---123-43343
Q gi|254780276|r 37 GGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGS-NNTRESVELAQYAHSIGADALLV---VIP-YYNKP 110 (292)
Q Consensus 37 ~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~-~~~~~~i~~a~~a~~~Gad~i~v---~~P-~~~~~ 110 (292)
|-||.+|. ....-...||+++++..++..+| |+-+.-.... .+.+|+.++.+.|-+.|..|+|| -|+ .+|.+
T Consensus 349 D~LY~ng~--~L~~~pL~~RR~~L~~i~~~~~nWr~~~~~~~~~~~~~ee~~~~l~~ai~~g~EGlm~K~~~p~~~~Y~p 426 (705)
T TIGR00574 349 DILYLNGE--SLIDEPLIERREILESIVKPIPNWRIEIAEMIDVSDNVEELEKFLNEAISEGCEGLMVKDLEPDEAIYEP 426 (705)
T ss_pred EEEEECCC--CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCC
T ss_conf 56232780--3556773889999887535288817999744631279899999999999638973897046879863147
Q ss_pred CHHH--HH----HHHHHHHHHHCCCCEE
Q ss_conf 1788--99----9999987530233012
Q gi|254780276|r 111 NRRG--LL----AHFGEIATTVSSPIYI 132 (292)
Q Consensus 111 ~~~~--i~----~~~~~i~~~~~~pi~i 132 (292)
..+. .+ +|-..++|..|+ |++
T Consensus 427 g~R~~~w~K~K~~Y~~~~~d~LDL-vV~ 453 (705)
T TIGR00574 427 GKRGWLWLKFKPDYLEGMGDTLDL-VVI 453 (705)
T ss_pred CCCCCCCEEEECCCCCCCCCEEEE-EEE
T ss_conf 777887503300236656751016-888
No 214
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=88.75 E-value=2.2 Score=23.40 Aligned_cols=182 Identities=16% Similarity=0.170 Sum_probs=99.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC----------------HHCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 738988868999999999999769989998672325----------------0108999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGE----------------SSTLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE----------------~~~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|.-|.+...+.++.|+++|+|.|=++=-.+. ...+|.+.-.++++...+. +.++|++.
T Consensus 21 ~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~-~~~~Pivl 99 (265)
T COG0159 21 PYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAK-GVKVPIVL 99 (265)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCCCEEE
T ss_conf 88948899989999999999867988899668888867668899998999997799889999999999861-89998899
Q ss_pred -CCCCC-HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf -67410-2789999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 -GIGSN-NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 -gv~~~-~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
+-... -....-++.+.+++.|+||+++.= . .. +-.+.|...+++.++..+..=.|. -+.+.+.++.+
T Consensus 100 m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD---L--P~-ee~~~~~~~~~~~gi~~I~lvaPt-----t~~~rl~~i~~ 168 (265)
T COG0159 100 MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD---L--PP-EESDELLKAAEKHGIDPIFLVAPT-----TPDERLKKIAE 168 (265)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCEEEECC---C--CH-HHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 8701188773599999999975998798578---9--86-677789999997698679886999-----99899999997
Q ss_pred HCCH---------HHHHHCC-CCCH-HHHHHHHHHCCCCEEECCCCC----CCHHHHHHHCCCCCCCCCC
Q ss_conf 2030---------2331001-2211-358999973598403201322----1001243203344552222
Q gi|254780276|r 154 TYPN---------IVGVKDA-TGKI-ELVSEQRLSCGFDFIQLSGED----SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pn---------i~giK~~-~~~~-~~~~~~~~~~~~~~~v~~G~~----~~~~~~~~~G~~G~is~~~ 208 (292)
.-.. +.|.+.. +.+. +.+.+++...+..+ ..|.+ ++.-..... ++|.+.|++
T Consensus 169 ~a~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~~Pv--~vGFGIs~~e~~~~v~~~-ADGVIVGSA 235 (265)
T COG0159 169 AASGFIYYVSRMGVTGARNPVSADVKELVKRVRKYTDVPV--LVGFGISSPEQAAQVAEA-ADGVIVGSA 235 (265)
T ss_pred HCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHH-CCEEEECHH
T ss_conf 4798589996666667776530469999999997448973--874486999999999976-885797399
No 215
>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).
Probab=88.74 E-value=2.2 Score=23.39 Aligned_cols=100 Identities=17% Similarity=0.237 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCC------------CCCCCCCHHHHHH
Q ss_conf 6899999999999976998999867232501089999999865431101234430------------0367410278999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPV------------MAGIGSNNTRESV 86 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pi------------i~gv~~~~~~~~i 86 (292)
=|.+..++.++.+.+.+|+|+.+.++..... +..+..+. ..+|+ +..|...+..-..
T Consensus 41 ~~~~~e~~~l~~l~~~~vDGiIi~~~~~~~~-----~~~~~~~~------~~iPvV~~~~~~~~~~~~~~V~~Dn~~~~~ 109 (281)
T pfam00532 41 DGEDTLTNAIDLLLASGADGIIITTPAPSGD-----DITAKAEG------YGIPVIAADDAFDNPDGVPCVMPDDTQAGY 109 (281)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHH-----HHHHHHHH------CCCCEEEEECCCCCCCCCCEEEECHHHHHH
T ss_conf 9989999999999965999899936889849-----99999985------799789992465788888689966799999
Q ss_pred HHHHHHHHCCCCC-CCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 9753432102443-2001-234334317889999999875302330
Q gi|254780276|r 87 ELAQYAHSIGADA-LLVV-IPYYNKPNRRGLLAHFGEIATTVSSPI 130 (292)
Q Consensus 87 ~~a~~a~~~Gad~-i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi 130 (292)
..++|.-+.|..- +.+. .|..... ..+=++-|++...+.++++
T Consensus 110 ~a~~~Li~~Ghrr~i~~~~~~~~~~~-~~~R~~Gf~~al~~~g~~~ 154 (281)
T pfam00532 110 ESTQYLIAEGHKRPIAVMAGPASALT-ARERVQGFMAALAAAGREV 154 (281)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCHH-HHHHHHHHHHHHHHCCCCC
T ss_conf 99999998389770477307876507-8999999999999759999
No 216
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=88.64 E-value=2.2 Score=23.35 Aligned_cols=95 Identities=9% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367-41027899997534321024
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~Ga 97 (292)
-|.+.+.+.++.+.+.|.+.+=+- . .+.++.+.+.++.++.+++-+ .+.+..+++++++..++.+.
T Consensus 125 ~~~~e~~~~a~~~~~~Gf~~~K~k----------~---~~~i~avR~~~G~~~~l~vDan~~~~~~~Ai~~~~~l~~~~l 191 (361)
T cd03322 125 RDIPELLEAVERHLAQGYRAIRVQ----------L---PKLFEAVREKFGFEFHLLHDVHHRLTPNQAARFGKDVEPYRL 191 (361)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEC----------H---HHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 996999999998886598878745----------2---999999999729997085125568999999999999874202
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 432001234334317889999999875302330121
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
.++ -.|. ..+ =++-++++.+++++||..=
T Consensus 192 ~w~--EeP~----~~~-d~~~~~~l~~~~~iPIa~g 220 (361)
T cd03322 192 FWM--EDPT----PAE-NQEAFRLIRQHTATPLAVG 220 (361)
T ss_pred HCC--CCCC----CCC-CHHHHHHHHHHCCCCEEEC
T ss_conf 102--1798----865-8899999997469988827
No 217
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=88.56 E-value=2 Score=23.65 Aligned_cols=99 Identities=14% Similarity=0.121 Sum_probs=48.1
Q ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----------CCHHCCCHHHHHHHHHHHHHCCC-CCCC
Q ss_conf 011120177389888689999999999997699899986723----------25010899999998654311012-3443
Q gi|254780276|r 4 GSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----------GESSTLSHEEHCRIIELCVKTVA-SRVP 72 (292)
Q Consensus 4 Gi~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----------GE~~~Ls~~Er~~~~~~~~~~~~-~r~p 72 (292)
=+++|+.+-+.+||.+....+.-+ +...+.|+ |+.+.|.+ .....+..++...-++.+++.+. ....
T Consensus 16 iv~apm~~~~~~~G~~t~~~~~yy-~~rA~GG~-Gliite~~~V~~~~~~~~~~~~~~~~d~~i~~~r~la~avH~~G~~ 93 (361)
T cd04747 16 IVMAPMTRSFSPGGVPGQDVAAYY-RRRAAGGV-GLIITEGTAVDHPAASGDPNVPRFHGEDALAGWKKVVDEVHAAGGK 93 (361)
T ss_pred CEECCCCCCCCCCCCCCHHHHHHH-HHHHCCCC-CEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 288774878388998999999999-99976896-1079706710562135899877758999999999999999976997
Q ss_pred CCCCCCC---------------------------------CHHHH-------HHHHHHHHHHCCCCCCCEEC
Q ss_conf 0036741---------------------------------02789-------99975343210244320012
Q gi|254780276|r 73 VMAGIGS---------------------------------NNTRE-------SVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 73 ii~gv~~---------------------------------~~~~~-------~i~~a~~a~~~Gad~i~v~~ 104 (292)
++++..+ .+.++ -.+-|++|+++|+|+|-+..
T Consensus 94 ~~~QL~H~G~~~~~~~~~~~~~~~~~ps~~~~~~~~~~~~mt~eeI~~ii~~f~~AA~rA~~AGfDGVEIH~ 165 (361)
T cd04747 94 IAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAAADARRLGFDGIELHG 165 (361)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 987000356666666788889886687566678898888799999999999999999999983999899510
No 218
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.49 E-value=1.1 Score=25.62 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=57.1
Q ss_pred CCCCCCC--CCCCHHHHHH--HHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCH
Q ss_conf 4430036--7410278999--97534321024432001234334317889999999875302330121001111121110
Q gi|254780276|r 70 RVPVMAG--IGSNNTRESV--ELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDV 145 (292)
Q Consensus 70 r~pii~g--v~~~~~~~~i--~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~ 145 (292)
..|++.. +++......| .+|+.|++.|... .+. .......+.+..+-|+.+.+..+--+++-|.....-...++
T Consensus 60 ~~P~~I~aMTGG~~~~~~IN~~LA~~A~~~gi~m-~vG-Sqr~al~~~~~~~sf~vvR~~~p~~~l~aNiGa~~~~~~~~ 137 (351)
T PRK05437 60 SAPFLINAMTGGSEKAKEINRKLAEAAEELGIAM-GVG-SQRAALKDPELADSFSVVRKVAPDGLLFANIGAVQLYGYGV 137 (351)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCE-EEC-CHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCH
T ss_conf 7876886534687546289999999999839877-733-17888539145656999998688873886127210143589
Q ss_pred HHHHHHHHHCC-HHHH----------HHCCCCC----HHHHHHHHHHCCCCEEE---CCCC-CCCHHHHHHHCCCCC-CC
Q ss_conf 68999743203-0233----------1001221----13589999735984032---0132-210012432033445-52
Q gi|254780276|r 146 DTMAELAATYP-NIVG----------VKDATGK----IELVSEQRLSCGFDFIQ---LSGE-DSSALGFNAHGGVGC-IS 205 (292)
Q Consensus 146 ~~l~~L~~~~p-ni~g----------iK~~~~~----~~~~~~~~~~~~~~~~v---~~G~-~~~~~~~~~~G~~G~-is 205 (292)
+.+.+..+.+. +-.. .-+...| ++.+.++++..+-++.+ -+|. .+........|+++. ++
T Consensus 138 ~~~~~av~~i~AdAl~iHlN~~QEl~qpEGDr~f~~~l~~I~~i~~~~~vPVIvKeVG~Gis~e~a~~l~~~Gv~~IdVs 217 (351)
T PRK05437 138 EEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDRIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA 217 (351)
T ss_pred HHHHHHHHHHCCCCEEEECCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 99999999716781575246245402888897788999999999986799889852157889999999996799999957
Q ss_pred CCCC
Q ss_conf 2223
Q gi|254780276|r 206 VTAN 209 (292)
Q Consensus 206 ~~~n 209 (292)
+.+.
T Consensus 218 g~GG 221 (351)
T PRK05437 218 GAGG 221 (351)
T ss_pred CCCC
T ss_conf 9988
No 219
>pfam02548 Pantoate_transf Ketopantoate hydroxymethyltransferase. Ketopantoate hydroxymethyltransferase (EC:2.1.2.11) is the first enzyme in the pantothenate biosynthesis pathway.
Probab=88.34 E-value=2.3 Score=23.21 Aligned_cols=101 Identities=13% Similarity=0.094 Sum_probs=62.5
Q ss_pred HHHHHCCCCEEEECCCCCCH-------HCCCHHHHHHHHHHHHHCCCCCCCCCCCC----CCCHHHHHHHHHHHHH-HCC
Q ss_conf 99997699899986723250-------10899999998654311012344300367----4102789999753432-102
Q gi|254780276|r 29 EWQITEGSGGLVPAGTTGES-------STLSHEEHCRIIELCVKTVASRVPVMAGI----GSNNTRESVELAQYAH-SIG 96 (292)
Q Consensus 29 ~~l~~~gv~gi~~~G~tGE~-------~~Ls~~Er~~~~~~~~~~~~~r~pii~gv----~~~~~~~~i~~a~~a~-~~G 96 (292)
..+-++|+|-|+++-|.|-. ...|.+|-..-.+.+++.++. .-+++.. -..|.+++++-|...- +.|
T Consensus 30 ~~~d~agiD~iLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~-~~iv~DmPf~sy~~s~~~a~~nA~rlmke~G 108 (261)
T pfam02548 30 RLADEAGVDVILVGDSLGMVVLGHESTLPVTLEEMIYHTKAVARGAPR-AFVVADMPFGSYEASPEQALRNAARLMKEAG 108 (261)
T ss_pred HHHHHCCCCEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999985998899768514312577566727999999999999852888-6499478753246799999999999998549
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE--ECHHH
Q ss_conf 4432001234334317889999999875302330121--00111
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY--NNPSR 138 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY--n~P~~ 138 (292)
||+|-+-- -.+..+..+.+.+ ..+|++=+ -.|+.
T Consensus 109 adaVKlEg-------g~~~~~~I~~l~~-~GIPV~gHiGL~PQ~ 144 (261)
T pfam02548 109 ADAVKLEG-------GAEMADTIKALVD-RGIPVMGHIGLTPQS 144 (261)
T ss_pred CCEEEECC-------CCCHHHHHHHHHH-CCCCEEEEECCCCHH
T ss_conf 99899788-------8535899999998-899765342367401
No 220
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=88.24 E-value=2.4 Score=23.17 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 8886899999999999976998999867232
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTTG 46 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG 46 (292)
|-.-|.+.....++-++.+|+++|.+.-..+
T Consensus 41 da~~D~~kQ~~~ie~~I~qgvD~Iiv~p~d~ 71 (272)
T cd06300 41 SADGDVAQQIADIRNLIAQGVDAIIINPASP 71 (272)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 6999999999999999985999999978976
No 221
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=88.24 E-value=2.4 Score=23.17 Aligned_cols=115 Identities=16% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEC-CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC
Q ss_conf 689999999999997699899986-72325010899999998654311012344300367-4102789999753432102
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPA-GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~-G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G 96 (292)
-|.+.+.+.++.+++.|.+.+=+- |. -+.+|-.+-++.+.+.+++.+.+.+-+ ++.+..+++++++..++.|
T Consensus 159 ~~~~~l~~~~~~~~~~G~~~~KikiG~------~~~~~D~~rv~avr~avG~~~~l~vDan~~~~~~~Ai~~~~~le~~~ 232 (385)
T cd03326 159 DDLGRLRDEMRRYLDRGYTVVKIKIGG------APLDEDLRRIEAALDVLGDGARLAVDANGRFDLETAIAYAKALAPYG 232 (385)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCC------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 899999999999996799989994899------98899999999999973898738864476789999999999855329
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 44320012343343178899999998753023301210011111211106899974
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
..++ =-| ...+++ +-++++.+++++||..=.+ ..+...+.+|.
T Consensus 233 l~w~--EeP----~~~~d~-~~~a~l~~~~~~PIa~gE~------~~s~~~~~~li 275 (385)
T cd03326 233 LRWY--EEP----GDPLDY-ALQAELADHYDGPIATGEN------LFSLQDARNLL 275 (385)
T ss_pred CCEE--ECC----CCCCCH-HHHHHHHHHCCCCEECCCC------CCCHHHHHHHH
T ss_conf 9189--788----995589-9999999638999981888------65999999999
No 222
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.23 E-value=2.4 Score=23.16 Aligned_cols=32 Identities=13% Similarity=0.045 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88868999999999999769989998672325
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTTGE 47 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE 47 (292)
+.+-|.+...+.++.++..|++||.+.....+
T Consensus 38 ~~~~d~~~q~~~i~~li~~~vDgIii~~~~~~ 69 (271)
T cd06321 38 SADYDLNKQVSQIDNFIAAKVDLILLNAVDSK 69 (271)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 79889999999999999749988999347840
No 223
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=88.17 E-value=2.4 Score=23.14 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=25.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 3898886899999999999976998999867232
Q gi|254780276|r 13 FTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTG 46 (292)
Q Consensus 13 f~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG 46 (292)
+..+.+-|.+...+.++.++.+|++||.+.....
T Consensus 35 ~~~~~~~d~~~q~~~i~~~i~~~vdgii~~p~~~ 68 (275)
T cd06320 35 QAAPSEGDQQGQLSIAENMINKGYKGLLFSPISD 68 (275)
T ss_pred EECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 9689975899999999999974998798767880
No 224
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=88.17 E-value=2.4 Score=23.14 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=9.2
Q ss_pred HHHHHHCCCCCCCCCCCCCCC
Q ss_conf 654311012344300367410
Q gi|254780276|r 60 IELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 60 ~~~~~~~~~~r~pii~gv~~~ 80 (292)
++.+.+..++++|+|--+|++
T Consensus 118 i~~~r~~L~~~~pLIGF~G~P 138 (335)
T cd00717 118 IKLTRKELPGEVPLIGFAGAP 138 (335)
T ss_pred HHHHHHHCCCCCCEEEECCCH
T ss_conf 999999738888768863876
No 225
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=88.15 E-value=2.4 Score=23.13 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=27.6
Q ss_pred EECCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC---------CHHCCCHHHHHHHHHHHHHCC
Q ss_conf 111201773-898886899999999999976998999867232---------501089999999865431101
Q gi|254780276|r 5 SIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTG---------ESSTLSHEEHCRIIELCVKTV 67 (292)
Q Consensus 5 i~~~~~TPf-~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG---------E~~~Ls~~Er~~~~~~~~~~~ 67 (292)
+++|+.+-+ +++|.+..+.+.. |+...+-.|+.+.+.+. ....+..++...-++.+++.+
T Consensus 19 v~apm~~~~~~~~g~~~~~~~~~---y~~~rag~Glii~~~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~av 88 (362)
T PRK10605 19 FMAPLTRLRSIEPGDIPTPLMAE---YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGV 88 (362)
T ss_pred EECCCCCCCCCCCCCCCHHHHHH---HHHHHCCCCEEEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 87212587667989989899999---99986788889981458886436789988658999999999999999
No 226
>pfam04131 NanE Putative N-acetylmannosamine-6-phosphate epimerase. This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilisation pathway found mainly in pathogenic bacteria.
Probab=88.04 E-value=1.3 Score=24.99 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=8.0
Q ss_pred HHHHHHHHHCCCCEEEECCCC
Q ss_conf 999999997699899986723
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTT 45 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~t 45 (292)
.+.++-+++.|++-+.+=+|.
T Consensus 54 ~~ev~~l~~aGadiIA~DaT~ 74 (192)
T pfam04131 54 MKDIDELANAGADIIALDGTD 74 (192)
T ss_pred HHHHHHHHHCCCCEEEEECCC
T ss_conf 999999998599999984678
No 227
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=87.89 E-value=2.5 Score=23.02 Aligned_cols=123 Identities=13% Similarity=0.041 Sum_probs=64.8
Q ss_pred HHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC------------CCHHHHHHHHHHHHHHCCC
Q ss_conf 9997699899986723250108999999986543110123443003674------------1027899997534321024
Q gi|254780276|r 30 WQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG------------SNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 30 ~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~------------~~~~~~~i~~a~~a~~~Ga 97 (292)
..-+.|.+|+=+........ ...++..++-+...+. + +.+....+ ..+.+........|+++|+
T Consensus 3 ~a~~~G~~~vE~~~~~~~~~-~~~~~~~~l~~~~~~~-g--l~i~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~a~~lG~ 78 (201)
T pfam01261 3 LAAELGFDGVELFFDDPRPA-SDKLEIEELKALLKEY-G--LEITSLNPSLGLLEPDEREREAALEALKRAIELAAALGA 78 (201)
T ss_pred HHHHCCCCEEEECCCCCCCC-CCHHHHHHHHHHHHHC-C--CEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 89967999999736887644-5725899999999970-9--979999778654588989999999999999999997399
Q ss_pred CCCCEECCCC-CCCCH----HHHHHHHHHHHHHH---CCCCEEEECHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 4320012343-34317----88999999987530---233012100111112111068999743203
Q gi|254780276|r 98 DALLVVIPYY-NKPNR----RGLLAHFGEIATTV---SSPIYIYNNPSRTVIEMDVDTMAELAATYP 156 (292)
Q Consensus 98 d~i~v~~P~~-~~~~~----~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~~~~~~~l~~L~~~~p 156 (292)
..+.+.++.+ ...+. +.+.+.++++++.+ ++.+.+-+.|......-+++.+.+|.++++
T Consensus 79 ~~i~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~a~~~gi~i~iE~~~~~~~~~~~~~~~~~l~~~v~ 145 (201)
T pfam01261 79 KVVVVHPGGALPGEDREEALDRLAESLNELAELAEEYGVKLALENHPGTGVELGYFEEALRLIEEVD 145 (201)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHHHHCC
T ss_conf 5899826887889999999999999999999988755738999987998867899999999998649
No 228
>TIGR02708 L_lactate_ox L-lactate oxidase; InterPro: IPR014080 Members of this entry oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence..
Probab=87.84 E-value=1.5 Score=24.66 Aligned_cols=43 Identities=23% Similarity=0.204 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL 62 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~ 62 (292)
||.--|++.....+-+|.=+ |+.+.+|.-|.+-...|.--.+.
T Consensus 14 iN~yDLE~~A~~ViP~gaF~-YIA~~agD~fT~r~N~Raf~HKL 56 (368)
T TIGR02708 14 INTYDLEEMAQQVIPKGAFG-YIASGAGDTFTLRENIRAFNHKL 56 (368)
T ss_pred EECCCCHHHHHHCCCCCCCC-CCCCCCCCCHHHHHCCHHHCCCC
T ss_conf 85134124443126764343-30136665122443102232420
No 229
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=87.77 E-value=2.5 Score=22.97 Aligned_cols=96 Identities=11% Similarity=0.084 Sum_probs=59.7
Q ss_pred HHHHHCCCCEEEECCCCCC-------HHCCCHHHHHHHHHHHHHCCCCCCCCC----CCCCCCHHHHHHHHHHHHH-HCC
Q ss_conf 9999769989998672325-------010899999998654311012344300----3674102789999753432-102
Q gi|254780276|r 29 EWQITEGSGGLVPAGTTGE-------SSTLSHEEHCRIIELCVKTVASRVPVM----AGIGSNNTRESVELAQYAH-SIG 96 (292)
Q Consensus 29 ~~l~~~gv~gi~~~G~tGE-------~~~Ls~~Er~~~~~~~~~~~~~r~pii----~gv~~~~~~~~i~~a~~a~-~~G 96 (292)
+.+-+.|||-++++-|.|- ....|.+|-..-.+.|+..++. ..++ +|.-..|.+++++-|...- +.|
T Consensus 26 ~i~d~agvD~iLVGDSlgmv~~G~~~T~~vtld~mi~H~~aV~rg~~~-~~vv~DmPf~sy~~s~~~A~~nA~rl~ke~G 104 (254)
T cd06557 26 KLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPR-ALVVADMPFGSYQTSPEQALRNAARLMKEAG 104 (254)
T ss_pred HHHHHCCCCEEEECCCHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCC-CEEEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999875998999777588730777664416899999999999711877-3399855665457999999999999998559
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4432001234334317889999999875302330121
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
||+|-+-. -.++.+..+.+.+ .++|+|=+
T Consensus 105 adaVKlEg-------g~~~~~~i~~L~~-~GIPV~gH 133 (254)
T cd06557 105 ADAVKLEG-------GAEVAETIRALVD-AGIPVMGH 133 (254)
T ss_pred CCEEEECC-------CCCHHHHHHHHHH-CCCCEEEE
T ss_conf 99899798-------8338999999998-79976654
No 230
>COG1850 RbcL Ribulose 1,5-bisphosphate carboxylase, large subunit [Carbohydrate transport and metabolism]
Probab=87.68 E-value=2.6 Score=22.93 Aligned_cols=139 Identities=14% Similarity=0.047 Sum_probs=87.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHC----CCCCCCCCCCCCCCHHH
Q ss_conf 20177389888689999999999997699899986723250108999999986543110----12344300367410278
Q gi|254780276|r 8 ALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKT----VASRVPVMAGIGSNNTR 83 (292)
Q Consensus 8 ~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~----~~~r~pii~gv~~~~~~ 83 (292)
-+-|-++..--++.+...+.+--++..|||=+==-=..-+..+.-.+||...+-.+++. .+.+.--.+++++. ++
T Consensus 157 LlgtivKPklGl~~e~~a~~~yE~~~GGvD~iKDDEnl~s~~f~~~e~R~~~~m~~i~~aeaeTGekk~y~~NITa~-~~ 235 (429)
T COG1850 157 LLGTIVKPKLGLSPEEYAELAYELLSGGVDFIKDDENLTSPPFNRFEERVAKIMEAIDKAEAETGEKKMYAVNITAP-CE 235 (429)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC-HH
T ss_conf 41343476557998999999999984576444162320586566589999999999999888638657899504688-79
Q ss_pred HHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHH--HC---CCCCCHHHHHHHH
Q ss_conf 999975343210244320012343343178899999998753023301210011--11---1211106899974
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPS--RT---VIEMDVDTMAELA 152 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~--~~---g~~~~~~~l~~L~ 152 (292)
+++++++.++++|++++|+---.+ -=...+|+++- +..+++|..+-+=. .| +..++.-.+.|+.
T Consensus 236 EM~rrae~a~elG~~~~midi~~~----G~~a~q~lre~-~d~gl~ihaHramh~a~tr~p~~Gis~~vlaK~~ 304 (429)
T COG1850 236 EMMRRAELAAELGANYVMIDIVVT----GFTALQYLRED-EDIGLAIHAHRAMHAAFTRSPNHGISFLVLAKLL 304 (429)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEC----CCHHHHHHHHC-CCCCCEEEECHHHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 999999999972998799998733----62898998862-0379447851214556404888773199999999
No 231
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=87.53 E-value=2.6 Score=22.87 Aligned_cols=170 Identities=16% Similarity=0.107 Sum_probs=91.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
.-+.++++...+++.+.|+.++++.=- +-+.|+..+.++.+.+....+.+-+.|+--..+--. .+..||
T Consensus 70 ~~~~~~l~~i~~~~~~~GtTsfLpT~i-----T~~~e~i~~al~~~~e~~~~~ga~ilGiHLEGP~ls------~~kkGA 138 (380)
T COG1820 70 AGSVETLETMAEAHLRHGTTSFLPTLI-----TASLEKIKAALRAIREAIAKGGAQILGIHLEGPFLS------PEKKGA 138 (380)
T ss_pred CCCHHHHHHHHHHHHHCCEEEEEEECC-----CCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC------HHHCCC
T ss_conf 647899999999866217422420103-----599999999999999998546883689984167568------755469
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 43200123433431788999999987530233012100111112111068999743203023310012211358999973
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLS 177 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~~~ 177 (292)
.+|-|.++.+.+.++.+...++.. +- ++==.|...+ +.|.+.++. +..-++.+..|..+.++.......
T Consensus 139 -----h~~~~ir~~~~~~~~~~~~~a~g~-i~-~vTlAPE~~~---~~e~i~~l~-~~giivs~GHS~Atye~~~~a~~~ 207 (380)
T COG1820 139 -----HNPEYIRPPDPEELEQLIAAADGL-IK-LVTLAPELDG---TKELIRLLA-NAGIVVSIGHSNATYEQARAAFEA 207 (380)
T ss_pred -----CCHHHCCCCCHHHHHHHHHHCCCC-EE-EEEECCCCCC---CHHHHHHHH-HCCEEEEECCCCCCHHHHHHHHHC
T ss_conf -----988990798999999998744684-69-9998878888---899999998-689399715752549999999970
Q ss_pred CCCCE-EECCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 59840-32013221001243203344552222321
Q gi|254780276|r 178 CGFDF-IQLSGEDSSALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 178 ~~~~~-~v~~G~~~~~~~~~~~G~~G~is~~~n~~ 211 (292)
--..+ ..|++. .-+.....|.-|.+-...+++
T Consensus 208 Ga~~~THlfNaM--s~l~hREPGvvGA~L~~~~~~ 240 (380)
T COG1820 208 GATFVTHLFNAM--SGLHHREPGVVGAALDNPDVY 240 (380)
T ss_pred CCCEEEEECCCC--CCCCCCCCCCCCEEECCCCEE
T ss_conf 863698601478--887888986104342279748
No 232
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=87.51 E-value=1.3 Score=25.01 Aligned_cols=139 Identities=17% Similarity=0.127 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEEC----------CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHH
Q ss_conf 689999999999997699899986----------7232501089999999865431101234430036--7410278999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPA----------GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAG--IGSNNTRESV 86 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~----------G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~g--v~~~~~~~~i 86 (292)
=|.+.+.+.+..+.+.|.++|=++ +..|-+..-..+--.++++.+.+.++..+||-+= .|-.+.+...
T Consensus 72 ~dpe~~a~aA~~~~e~g~~~IDlN~GCP~~~V~k~g~Gs~Ll~~p~~~~~iv~a~~~~v~~~iPVtvK~RlG~~~~~~~~ 151 (312)
T PRK10550 72 QYPQWLAENAARAVELGSYGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGDRKF 151 (312)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHH
T ss_conf 88899999999999769996625479997896689926853289779999999999745878995477535899863199
Q ss_pred HHHHHHHHCCCCCCCEECCCCCC-CCHHHH-HHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf 97534321024432001234334-317889-9999998753023301210011111211106899974320302331001
Q gi|254780276|r 87 ELAQYAHSIGADALLVVIPYYNK-PNRRGL-LAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~~P~~~~-~~~~~i-~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
++++.+++.|++++.|.+---.. .+-..+ .++++++.+++++|++ + .|-..+++...++.+ ..++-|+=-+
T Consensus 152 e~~~~~~~~G~~~ltvH~RT~~q~y~~~~~dw~~i~~~~~~~~iPvi-~-----NGdI~s~~d~~~~~~-~tg~dgvMiG 224 (312)
T PRK10550 152 EIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGEIRQRLTIPVI-A-----NGEIWDWQSAQQCMA-ISGCDAVMIG 224 (312)
T ss_pred HHHHHHHHCCCCEEEEECCCHHHCCCCCCCCHHHHHHHHHHCCCCEE-E-----ECCCCCHHHHHHHHH-HHCCCEEEEC
T ss_conf 99999997399879990552653589983489999999974899899-7-----079599999999987-1489999965
No 233
>KOG0538 consensus
Probab=87.42 E-value=1 Score=25.84 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 27899997534321024432001
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
+-+-+.++.++|+++|+.++.+.
T Consensus 132 dr~It~~Lv~raEk~GfkAlvlT 154 (363)
T KOG0538 132 DRDITEQLVKRAEKAGFKALVLT 154 (363)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 44689999999997296699998
No 234
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=87.32 E-value=2.4 Score=23.18 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCCEEEECCC--CCCH--HCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999999769989998672--3250--108999999986543110123443003674--102789999753432102443
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGT--TGES--STLSHEEHCRIIELCVKTVASRVPVMAGIG--SNNTRESVELAQYAHSIGADA 99 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~--tGE~--~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~--~~~~~~~i~~a~~a~~~Gad~ 99 (292)
......++.|+|.++++++ .+-. .+.|.+|-.+.++.+.+.-. ++-|..... ........+..+.+.++|+|+
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gk-k~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDa 95 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGK-KVYVAVNTLLHNDELETLERYLDRLVELGVDA 95 (347)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 99999997699989957750115465334898999999999998699-49999655416410568999999999759878
Q ss_pred CCEECC
Q ss_conf 200123
Q gi|254780276|r 100 LLVVIP 105 (292)
Q Consensus 100 i~v~~P 105 (292)
|.+.=|
T Consensus 96 viv~Dp 101 (347)
T COG0826 96 VIVADP 101 (347)
T ss_pred EEECCH
T ss_conf 997188
No 235
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=87.21 E-value=2.7 Score=22.75 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=77.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654311012344300-----------3674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM-----------AGIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii-----------~gv~~~~~~~~i~ 87 (292)
-|.+...+.++.+++.+|+|+.+..+. .+.+...++.+. ++|++ ..|...+..-.-.
T Consensus 39 ~~~~~e~~~i~~l~~~~vDgiIl~~~~-----~~~~~~~~~~~~-------~iPvV~i~~~~~~~~~~~V~~D~~~~~~~ 106 (267)
T cd06283 39 NDPEKEKEYLESLLAYQVDGLIVNPTG-----NNKELYQRLAKN-------GKPVVLVDRKIPELGVDTVTLDNYEAAKE 106 (267)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-----CCHHHHHHHHHC-------CCCEEEECCCCCCCCCCEEEECHHHHHHH
T ss_conf 998999999999996699999985877-----998999999976-------99899968857899998899777999999
Q ss_pred HHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCE--EEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf 75343210244320012-343343178899999998753023301--210011111211106899974320302331001
Q gi|254780276|r 88 LAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIY--IYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~--iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
.+++..+.|..-+.++. |.....+..+=.+-|.+.+...+.++. ....+..+ ..--.+.+.++.+..|.+.++ .+
T Consensus 107 ~~~~L~~~G~~~i~~i~~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ai-i~ 184 (267)
T cd06283 107 AVDHLIEKGYERILFVTEPLDEISPRMERYEGFKEALAEHGIGVNEELIEIDDED-ADELDERLRQLLNKPKKKTAI-FA 184 (267)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-HHHHHHHHHHHHHCCCCCCEE-CC
T ss_conf 9999997599729999568778837999999999999975997651489833542-677999999998479998642-03
Q ss_pred CCCHHH------HHHHHHHCCCCEEECCCCCCC
Q ss_conf 221135------899997359840320132210
Q gi|254780276|r 165 TGKIEL------VSEQRLSCGFDFIQLSGEDSS 191 (292)
Q Consensus 165 ~~~~~~------~~~~~~~~~~~~~v~~G~~~~ 191 (292)
+.|... +.+.....|.++.+. |.|..
T Consensus 185 ~~D~~A~g~~~~l~~~g~~vP~disVv-g~dd~ 216 (267)
T cd06283 185 ANGLILLEVLKALKELGIRIPEDVGLI-GFDDT 216 (267)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCEEE-EECCH
T ss_conf 770999999999998299889876688-53886
No 236
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=86.98 E-value=2.8 Score=22.66 Aligned_cols=32 Identities=22% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 88868999999999999769989998672325
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTTGE 47 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE 47 (292)
|..-|.+.....++.++..|+++|.+....++
T Consensus 37 da~~d~~~Q~~~ie~li~~~vD~iiv~p~d~~ 68 (270)
T cd06308 37 DAADDNSKQVADIENFIRQGVDLLIISPNEAA 68 (270)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 79899999999999999849999999648852
No 237
>PRK13137 consensus
Probab=86.78 E-value=1.2 Score=25.27 Aligned_cols=62 Identities=26% Similarity=0.304 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCC------------------CHHHHHHHHHHHHHHHCCCC--EEEE
Q ss_conf 367410278999975343210244320012343343------------------17889999999875302330--1210
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKP------------------NRRGLLAHFGEIATTVSSPI--YIYN 134 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~------------------~~~~i~~~~~~i~~~~~~pi--~iYn 134 (292)
.-+|.++.+.+++.++... .|+|.+-+.-||--+. +-+.+++..+++.+..+.|+ |-|-
T Consensus 31 itaG~P~~~~s~~~~~~l~-~gaDiiElGiPFSDP~ADGPvIQ~A~~~AL~~G~~l~~~l~~~~~~r~~~~~PivlM~Y~ 109 (266)
T PRK13137 31 LTAGYPSAAGFLQVAEELL-AYADLLEVGIPYSDPLGDGPTIQRASEQALAGGTSTRRTLELVRELRALTDTPLVIMTYL 109 (266)
T ss_pred ECCCCCCHHHHHHHHHHHH-CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEECH
T ss_conf 6681888789999999997-389989978998885665799999999999779867789999997555689878999345
Q ss_pred CHH
Q ss_conf 011
Q gi|254780276|r 135 NPS 137 (292)
Q Consensus 135 ~P~ 137 (292)
||.
T Consensus 110 N~i 112 (266)
T PRK13137 110 NPI 112 (266)
T ss_pred HHH
T ss_conf 899
No 238
>PRK13124 consensus
Probab=86.76 E-value=2.9 Score=22.58 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=116.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC----CHH------------CCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 773898886899999999999976998999867232----501------------0899999998654311012344300
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTG----ESS------------TLSHEEHCRIIELCVKTVASRVPVM 74 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG----E~~------------~Ls~~Er~~~~~~~~~~~~~r~pii 74 (292)
-||---|--|.+...+.++-+.+.|+|-+=++=-.+ ++. -.+.+.-.++++.+.+.. .+|++
T Consensus 12 i~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPfSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~--~~piv 89 (257)
T PRK13124 12 IPFITAGDPDPETTIDLVLALEEAGADILELGIPYSDPLADGPVIQRASKRALNGGMNIVKAMELVGKMRKKV--TIPIV 89 (257)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CCCEE
T ss_conf 9886370899899999999999769999997898888776579999999999976996899999999852447--88889
Q ss_pred CCCCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHH
Q ss_conf 36741027--899997534321024432001-234334317889999999875302330121001111121110689997
Q gi|254780276|r 75 AGIGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAEL 151 (292)
Q Consensus 75 ~gv~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L 151 (292)
.=.--+.. ...-++++.|+++|+||+++. .| .++ -.-|.+.+..-++.++..=.| | +.+-+.++
T Consensus 90 lM~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipDLP------~eE-~~~~~~~~~~~gl~~I~lvaP--T----s~~Ri~~i 156 (257)
T PRK13124 90 YFTYYNPVLQYGLEKFFALARENGIDGLLIPDLP------LEE-SGELQEICDKYGIYLIPLVAP--T----SKERIKKI 156 (257)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHCCCCEEECCCCC------HHH-HHHHHHHHHHCCCCEEEEECC--C----CHHHHHHH
T ss_conf 9750078987579999999997599847778999------799-999999998668735788479--9----67999999
Q ss_pred HHHCCHHHH---------HHCCCC-CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 432030233---------100122-11-3589999735984032013-22100124320334455222232110024444
Q gi|254780276|r 152 AATYPNIVG---------VKDATG-KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVPRICAEFQ 219 (292)
Q Consensus 152 ~~~~pni~g---------iK~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~ 219 (292)
++.-..+++ .+.... +. ..+.++++..+-.+.+--| ....-...+..+++|++.|++ .++++
T Consensus 157 ~~~s~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~ADGvIVGSa------ivk~i 230 (257)
T PRK13124 157 AEQAEGFVYCVSSLGVTGVREEIETDLEEFIRTVKQYSNVPVAVGFGISTPEQVQKMKEIADGVVVGSA------LVEKI 230 (257)
T ss_pred HHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCEEEECHH------HHHHH
T ss_conf 854898389962466678765560889999999986179983898446999999999801999998289------99999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 431178827999999999999999
Q gi|254780276|r 220 QAMIRGDYRQALLYQDKLMPLHQA 243 (292)
Q Consensus 220 ~~~~~gd~~~A~~l~~~l~~l~~~ 243 (292)
+.... +.+...++.+.+..+.+.
T Consensus 231 ~~~~~-~~~~~~~v~~fv~~lk~a 253 (257)
T PRK13124 231 EEPEE-REEALAEVEEFASSLRES 253 (257)
T ss_pred HHCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 85687-578999999999999998
No 239
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=86.75 E-value=2.9 Score=22.57 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=11.3
Q ss_pred HHHHHHHHCCCCCCCEE
Q ss_conf 97534321024432001
Q gi|254780276|r 87 ELAQYAHSIGADALLVV 103 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~ 103 (292)
+-++.|.++|+|+|-+.
T Consensus 560 ~AA~rA~~AGFD~IEiH 576 (770)
T PRK08255 560 AATRRAAEAGFDWLELH 576 (770)
T ss_pred HHHHHHHHCCCCEEEEE
T ss_conf 99999998399989995
No 240
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=86.68 E-value=2.9 Score=22.55 Aligned_cols=132 Identities=18% Similarity=0.190 Sum_probs=65.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC----------CCCCCCHHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654311012344300----------36741027899997
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM----------AGIGSNNTRESVEL 88 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii----------~gv~~~~~~~~i~~ 88 (292)
-|.+.-++.++.+.+.+|+|+.+.++ ....++..+. ++|++ ..|...+-.-....
T Consensus 39 ~~~~~e~~~l~~l~~~~vDGiI~~~~-----~~~~~~~~~~----------~iPvV~~d~~~~~~~~~V~~Dn~~~~~~a 103 (265)
T cd06291 39 NDPEKEREYLEMLRQNQVDGIIAGTH-----NLGIEEYENI----------DLPIVSFDRYLSENIPIVSSDNYEGGRLA 103 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCC-----CCCHHHHHHC----------CCCEEEEECCCCCCCCEEEECHHHHHHHH
T ss_conf 99899999999998569985874178-----8409999977----------99999970557999998997769999999
Q ss_pred HHHHHHCCCCCCCEE-CCCC-CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 534321024432001-2343-34317889999999875302330121001111121110689997432030233100122
Q gi|254780276|r 89 AQYAHSIGADALLVV-IPYY-NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATG 166 (292)
Q Consensus 89 a~~a~~~Gad~i~v~-~P~~-~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~ 166 (292)
++|..+.|..-+..+ .|.. ....++-. +-|++..+..+++.-....+......-..+.+.++.++.|.+.++ .+..
T Consensus 104 ~~~L~~~Ghr~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ai-~~~n 181 (265)
T cd06291 104 AEELIERGCKHIAHIGGPNNTVSPTNLRY-EGFLDVLKENGLEVRIIEIQENFDDAEKKEEIKELLEEYPDIDGI-FASN 181 (265)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEE-ECCC
T ss_conf 99999739964999966888874899999-999999997699960899768898699999999998559998843-2166
Q ss_pred C
Q ss_conf 1
Q gi|254780276|r 167 K 167 (292)
Q Consensus 167 ~ 167 (292)
|
T Consensus 182 D 182 (265)
T cd06291 182 D 182 (265)
T ss_pred H
T ss_conf 8
No 241
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.64 E-value=2.9 Score=22.53 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCC-----------CCCCCCCHHHHH
Q ss_conf 886899999999999976998999867232501089999999865431101234430-----------036741027899
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPV-----------MAGIGSNNTRES 85 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pi-----------i~gv~~~~~~~~ 85 (292)
..-|.+.-++.++.+++.+|+|+.+.++. ++.++...+.+ ++|+ +..|...+-.-.
T Consensus 37 s~~~~~~e~~~i~~l~~~~vdGiIi~~~~-----~~~~~~~~~~~--------~iPvV~i~~~~~~~~~~~V~~Dn~~~~ 103 (265)
T cd06290 37 GHWNQSRELEALELLKSRRVDALILLGGD-----LPEEEILALAE--------EIPVLAVGRRVPGPGAASIAVDNFQGG 103 (265)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHC--------CCCEEEECCCCCCCCCCEEEECHHHHH
T ss_conf 99997999999999996599989992688-----88599999855--------999899825678899998984779999
Q ss_pred HHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCC---EEEECHHHCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 997534321024432001-234334317889999999875302330---1210011111211106899974320302331
Q gi|254780276|r 86 VELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPI---YIYNNPSRTVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi---~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi 161 (292)
...+++..+.|..-+..+ .|.....+. +-.+-|++.++..++++ .++... ....-..+.+.++.++.|.+.+|
T Consensus 104 ~~~~~~L~~~G~~~i~~i~~~~~~~~~~-~R~~Gf~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai 180 (265)
T cd06290 104 YLATQHLIDLGHRRIAHITGPRGHIDAR-DRLAGYRKALEEAGLEVQPDLIVQGD--FEEESGLEAVEELLQRGPDFTAI 180 (265)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHH-HHHHHHHHHHHHCCCCCCHHHEECCC--CCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999982998655604887870199-99999999999869999888834166--77178999999999719998842
Q ss_pred HCCCCCHHH---HHHH---HHHCCCCEEECCCCCCC
Q ss_conf 001221135---8999---97359840320132210
Q gi|254780276|r 162 KDATGKIEL---VSEQ---RLSCGFDFIQLSGEDSS 191 (292)
Q Consensus 162 K~~~~~~~~---~~~~---~~~~~~~~~v~~G~~~~ 191 (292)
.+..|... +..+ -...|.++.++ |.|..
T Consensus 181 -~~~nD~~A~g~~~~~~~~g~~vP~di~vi-gfD~~ 214 (265)
T cd06290 181 -FAANDQTAYGARLALYRRGLRVPEDVSLI-GFDDL 214 (265)
T ss_pred -EECCHHHHHHHHHHHHHHCCCCCCCEEEE-EECCH
T ss_conf -10578999999999998099999987999-99987
No 242
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.61 E-value=2.9 Score=22.52 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8886899999999999976998999867
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAG 43 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G 43 (292)
+.+-|.+...+.++.+++.|++||.+..
T Consensus 38 ~~~~d~~~q~~~i~~~i~~~vDgIii~p 65 (273)
T cd06310 38 ASETDVAGQVNLLENAIARGPDAILLAP 65 (273)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9978999999999999974999999916
No 243
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=86.60 E-value=2.9 Score=22.52 Aligned_cols=171 Identities=18% Similarity=0.250 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999769989998672325010899999998654311012344300367410278999975343210244320
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALL 101 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~ 101 (292)
+...+..+.+.+.|.|++.++||+| .+.++-.++++...+. -.+|+|.=.++.+- .++ ++|+++
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~g----vt~~~~~~~v~~ik~~--~~lPvilfP~~~~~-----is~-----~aDavf 91 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDG----VTEENVDNVVEAIKER--TDLPVILFPGSPSG-----ISP-----YADAVF 91 (240)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCC----CCHHHHHHHHHHHHHH--CCCCEEEECCCHHC-----CCC-----CCCEEE
T ss_conf 4528999999973998899778556----4479999999999750--69988993588100-----572-----577689
Q ss_pred EEC------CCCCCCCHHHHHHHHHHHH-HHHCCCCEEEECHHHC-----C---CCCCHHHH---HHHHHHCC--HHHHH
Q ss_conf 012------3433431788999999987-5302330121001111-----1---21110689---99743203--02331
Q gi|254780276|r 102 VVI------PYYNKPNRRGLLAHFGEIA-TTVSSPIYIYNNPSRT-----V---IEMDVDTM---AELAATYP--NIVGV 161 (292)
Q Consensus 102 v~~------P~~~~~~~~~i~~~~~~i~-~~~~~pi~iYn~P~~~-----g---~~~~~~~l---~~L~~~~p--ni~gi 161 (292)
++. |+|.-..+-+-...+..+. +.++..-++.| |..+ + +++..+.+ .+|+.++= .++++
T Consensus 92 f~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~-p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Yl 170 (240)
T COG1646 92 FPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVN-PDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVYL 170 (240)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHEECCEEEEEEC-CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_conf 8888517996404145662027887632111544899977-997136623555578985889999999999719858999
Q ss_pred HCCCC--CHHHHHHHHHHCCCCEEECCCC---CCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 00122--1135899997359840320132---21001243203344552222321
Q gi|254780276|r 162 KDATG--KIELVSEQRLSCGFDFIQLSGE---DSSALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 162 K~~~~--~~~~~~~~~~~~~~~~~v~~G~---~~~~~~~~~~G~~G~is~~~n~~ 211 (292)
-.+++ ++.....+......-..++.|. .++.......|++-.+. ||++
T Consensus 171 Eagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVt--G~ii 223 (240)
T COG1646 171 EAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVT--GTII 223 (240)
T ss_pred EECCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCEEEE--CCEE
T ss_conf 8068889986889999861455089858849899999999717998997--7002
No 244
>pfam00290 Trp_syntA Tryptophan synthase alpha chain.
Probab=86.58 E-value=2.9 Score=22.51 Aligned_cols=184 Identities=16% Similarity=0.174 Sum_probs=104.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++.+.+.|+|-+=++=-. .++. -.+.+.-.++++.+.+.- ..+|++.
T Consensus 13 ~yi~aG~P~~~~~~~~i~~l~~~GaDiiEiGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~r~~~-~~~pivl 91 (258)
T pfam00290 13 PFVTAGDPDLETTLEILEALEEAGADAIELGIPFSDPLADGPTIQRANLRALAGGMTLDQTLELVEEIRNKG-TSVPIVL 91 (258)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-CCCCEEE
T ss_conf 887073899899999999999769999997899888766589999999999986996999999999855128-9988899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHH
Q ss_conf 6741027--899997534321024432001-2343343178899999998753023301210011111211106899974
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~ 152 (292)
=.--+.. ...-++.+.|+++|+||+++. .| .++- +-|.+.++..++.++..=.|. -+.+-+.+++
T Consensus 92 M~Y~N~i~~~G~e~F~~~~~~~GvdGvIipDLP------~eE~-~~~~~~~~~~~l~~I~lvsPt-----t~~~Ri~~i~ 159 (258)
T pfam00290 92 MTYYNPVLNYGIERFYAQAAEAGVDGLIIPDLP------PEEA-DPLREAAEKHGIDLIFLVAPT-----TSDERLKTIS 159 (258)
T ss_pred EEECHHHHHCCHHHHHHHHHHCCCCEEECCCCC------HHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHH
T ss_conf 852088987299999999997599778707999------8899-999999984584358884588-----8199999999
Q ss_pred HHCCHHHH---------HHCCCC-CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 32030233---------100122-11-3589999735984032013-221001243203344552222
Q gi|254780276|r 153 ATYPNIVG---------VKDATG-KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 153 ~~~pni~g---------iK~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
+.-+.+++ .+.... +. +.+.++++..+-.+.+--| ....-...+..+++|.+.|++
T Consensus 160 ~~s~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~aDGvIVGSa 227 (258)
T pfam00290 160 EAASGFVYLVSRAGVTGARNAFNAQLDELVERLKKYTNVPVAVGFGISTPEHVKKIAAGADGVIVGSA 227 (258)
T ss_pred HHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCEEEECHH
T ss_conf 60898089985344567655563889999999986069984899457999999999815999998499
No 245
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=86.40 E-value=3 Score=22.45 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=96.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCC
Q ss_conf 689999999999997699899986723250108999999986543110123443003674--102789999753432102
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG--SNNTRESVELAQYAHSIG 96 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~--~~~~~~~i~~a~~a~~~G 96 (292)
-..+.+.+-++.|..-+-+=+-|. .|-+-+ |.+.-.++++...+.. .++++++.. +.+.++..+....++++|
T Consensus 36 ~~~~~l~~~i~~L~~l~P~FvSVT--yGAggs-tr~~T~~i~~~i~~~~--~i~~~~HLTCvg~t~~~i~~~L~~~~~~G 110 (296)
T PRK09432 36 EMEQTLWNSIDRLSSLKPKFVSVT--YGANSG-ERDRTHSIIKGIKKRT--GLEAAPHLTCIDATPEELRTIAKDYWNNG 110 (296)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEC--CCCCCC-CHHHHHHHHHHHHHHH--CCCCCEEEEECCCCHHHHHHHHHHHHHCC
T ss_conf 689999999999851699989960--798997-7356999999999874--99811266626999999999999999759
Q ss_pred CCCCCEE---CCCCC-CC--CHHHHHHHHHHHHHHHCCCCEEEECHHH--CCCCCCHHHHHHHHHHCCHHHHHH----CC
Q ss_conf 4432001---23433-43--1788999999987530233012100111--112111068999743203023310----01
Q gi|254780276|r 97 ADALLVV---IPYYN-KP--NRRGLLAHFGEIATTVSSPIYIYNNPSR--TVIEMDVDTMAELAATYPNIVGVK----DA 164 (292)
Q Consensus 97 ad~i~v~---~P~~~-~~--~~~~i~~~~~~i~~~~~~pi~iYn~P~~--~g~~~~~~~l~~L~~~~pni~giK----~~ 164 (292)
+.-|+.. +|.-. .+ ...++++|.++.. +..|.+=-+|.. --.++. +.+..|..+++ .|-. .-
T Consensus 111 I~nILALRGD~P~g~~~~~~yA~dLV~~Ir~~~---~f~I~VAaYPE~HPea~~~~-~Di~~Lk~Kvd--aGAdf~ITQ~ 184 (296)
T PRK09432 111 IRHIVALRGDLPPGSGKPEMYASDLVTLLKSVA---DFDISVAAYPEVHPEAKSAQ-ADLINLKRKVD--AGANRAITQF 184 (296)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCHH-HHHHHHHHHHH--CCCCEEEEEH
T ss_conf 754865489899999988746899999999836---98268742888786510067-89999999997--4666463002
Q ss_pred CCCHHHH---HHHHHHCCCCEEECCCCCCCH-HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCH
Q ss_conf 2211358---999973598403201322100-124320334455222232110024444431178827
Q gi|254780276|r 165 TGKIELV---SEQRLSCGFDFIQLSGEDSSA-LGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYR 228 (292)
Q Consensus 165 ~~~~~~~---~~~~~~~~~~~~v~~G~~~~~-~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~gd~~ 228 (292)
-.|.+.+ .+..+..+-++-++.|--... +..+..=.. ++ +.-.|+...+..+.+.. |-+
T Consensus 185 FFD~e~f~~f~d~~~~~GI~vPIiPGImPi~~~~~~~r~~~--~~--g~~iP~~l~~~le~~~~-d~e 247 (296)
T PRK09432 185 FFDVESYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFAD--MT--NVRIPSWMAKMFDGLDD-DAE 247 (296)
T ss_pred EECHHHHHHHHHHHHHCCCCCCCCCCEEECCCHHHHHHHHH--HH--CCCCHHHHHHHHHCCCC-CHH
T ss_conf 00499999999999985999740123010257899999999--81--99886999999860189-999
No 246
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=86.34 E-value=3 Score=22.42 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC---EECCCCCC-----CCHHHHHHHHHHHHH
Q ss_conf 9999998654311012344300367410278999975343210244320---01234334-----317889999999875
Q gi|254780276|r 53 HEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALL---VVIPYYNK-----PNRRGLLAHFGEIAT 124 (292)
Q Consensus 53 ~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~---v~~P~~~~-----~~~~~i~~~~~~i~~ 124 (292)
.++..+.++...+... ..|+++++.+.+.++..+.++..++.++++++ +..|..-. .+.+.+.+..+.+.+
T Consensus 76 ~~~~~~~l~~~~~~~~-~~~vi~si~g~~~~e~~~~~~~~~~~~~~~~ielNiScPNt~g~~~~~~d~~~~~~il~~v~~ 154 (308)
T PRK02506 76 FDYYLDYVLDLQKTGP-HKPHFLSVVGLSPEETHTILKKIQASDFEGLVELNLSCPNVPGKPQIAYDFETTDQILTEVFT 154 (308)
T ss_pred HHHHHHHHHHHHHHCC-CCCEEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHH
T ss_conf 8999998899996279-997588885077537788899987547542554633378851055552289999999999998
Q ss_pred HHCCCCEEEECH
Q ss_conf 302330121001
Q gi|254780276|r 125 TVSSPIYIYNNP 136 (292)
Q Consensus 125 ~~~~pi~iYn~P 136 (292)
.++.|+++==-|
T Consensus 155 ~~~~Pi~vKlsP 166 (308)
T PRK02506 155 YFTKPLGVKLPP 166 (308)
T ss_pred HHHCCCCCCCCC
T ss_conf 750333455898
No 247
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=86.25 E-value=3 Score=22.39 Aligned_cols=158 Identities=15% Similarity=0.058 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCE-EE--ECHHHCCCCCCH--HHHHHHHHH
Q ss_conf 0278999975343210244320012343343178899999998753023301-21--001111121110--689997432
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIY-IY--NNPSRTVIEMDV--DTMAELAAT 154 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~-iY--n~P~~~g~~~~~--~~l~~L~~~ 154 (292)
.+..-...+|+.|+..||.|+-+-.| +..+.|.+.+++||+ ++ ++|. +.+.++| +....|.+.
T Consensus 24 ~~~~im~~mA~Aa~~gGA~giR~~~~-----------~dI~aIk~~v~lPIIGi~K~~~~~-s~VyITPt~~ev~~l~~a 91 (219)
T cd04729 24 HSPEIMAAMALAAVQGGAVGIRANGV-----------EDIRAIRARVDLPIIGLIKRDYPD-SEVYITPTIEEVDALAAA 91 (219)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCH-----------HHHHHHHHCCCCCEEEEEECCCCC-CCEEECCCHHHHHHHHHC
T ss_conf 87789999999999789639980898-----------899999832899889999568899-984566889999999985
Q ss_pred CCHHHHHHCCCCC-------HHHH-HHHHHHCCCCEEECCCCC--CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 0302331001221-------1358-999973598403201322--10012432033445522223211002444443117
Q gi|254780276|r 155 YPNIVGVKDATGK-------IELV-SEQRLSCGFDFIQLSGED--SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIR 224 (292)
Q Consensus 155 ~pni~giK~~~~~-------~~~~-~~~~~~~~~~~~v~~G~~--~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~ 224 (292)
-..|+++ |++.. +..+ .++++.. +.+ ++.-.+ +.......+|++=.-+.++++-|..- ....
T Consensus 92 GadiIA~-DaT~R~RP~g~~l~~~i~~i~~~~-~~l-~MAD~st~ee~~~A~~~G~D~vgTTL~GYT~~t~-----~~~~ 163 (219)
T cd04729 92 GADIIAL-DATDRPRPDGETLAELIKRIHEEY-NCL-LMADISTLEEALNAAKLGFDIIGTTLSGYTEETA-----KTED 163 (219)
T ss_pred CCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHH-CCE-EEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCC-----CCCC
T ss_conf 9999999-467887989978999999999986-977-8875488999999998499899702145677878-----8999
Q ss_pred CCCHHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
Q ss_conf 88279999999999999998--426893899999998
Q gi|254780276|r 225 GDYRQALLYQDKLMPLHQAL--FMEPAVCCVKYALSR 259 (292)
Q Consensus 225 gd~~~A~~l~~~l~~l~~~~--~~~~~~~~~K~~l~~ 259 (292)
-|++-.+++-..+.- -++ .....|.-.|.++.+
T Consensus 164 PD~~lv~~l~~~~~~--pvIaEGri~tPe~a~~a~~~ 198 (219)
T cd04729 164 PDFELLKELRKALGI--PVIAEGRINSPEQAAKALEL 198 (219)
T ss_pred CCHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHC
T ss_conf 878999999997599--39970698999999999983
No 248
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=86.17 E-value=3.1 Score=22.37 Aligned_cols=135 Identities=15% Similarity=0.143 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHC--CCCCCC---CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543110--123443---003674102789999753432
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKT--VASRVP---VMAGIGSNNTRESVELAQYAH 93 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~--~~~r~p---ii~gv~~~~~~~~i~~a~~a~ 93 (292)
-|.+.-+++++.+++.+++|+.+.++.-.......+....+.+.-.-. .....+ -+..|...+..-.-..+++..
T Consensus 39 ~~~~~e~~~i~~l~~~~vdGiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~d~~~~~~~~~~~V~~Dn~~a~~~a~~~L~ 118 (273)
T cd06292 39 RGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGRAPPPLKVPHVSTDDALAMRLAVRHLV 118 (273)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 99799999999999649984999247666331578999999966998899933579988874899688999999999999
Q ss_pred HCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC---CEEEECHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 1024432001-23433431788999999987530233---012100111112111068999743203
Q gi|254780276|r 94 SIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP---IYIYNNPSRTVIEMDVDTMAELAATYP 156 (292)
Q Consensus 94 ~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p---i~iYn~P~~~g~~~~~~~l~~L~~~~p 156 (292)
+.|..-+.++ .|.....+.+-+. -|++..+...++ ..+.+.+. ..........++.+..|
T Consensus 119 ~~G~~~i~~i~~~~~~~~~~~R~~-G~~~a~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~ 182 (273)
T cd06292 119 ALGHRRIGFASGPGRTVPRRRKIA-GFRAALEEAGLEPPEALVARGMF--SVEGGQAAAVELLGSGP 182 (273)
T ss_pred HHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHCCCCCCCEEEEECCC--CHHHHHHHHHHHHHCCC
T ss_conf 859980899517877715999999-99999998499977148971677--77889999999974799
No 249
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=86.08 E-value=3.1 Score=22.34 Aligned_cols=106 Identities=11% Similarity=0.118 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHH--HHCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 689999999999997699899986723250108999999986543--11012-344300367410278999975343210
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELC--VKTVA-SRVPVMAGIGSNNTRESVELAQYAHSI 95 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~--~~~~~-~r~pii~gv~~~~~~~~i~~a~~a~~~ 95 (292)
-|.+...+.++.+++.+|+|+.+.++.. +..+.....+.. +-... ..-+-+..|...+..-....+++..+.
T Consensus 39 ~~~~~e~~~i~~l~~~~vdGiIi~~~~~-----~~~~~~~~~~~~PvV~i~~~~~~~~~~~V~~Dn~~a~~~~~~~L~~~ 113 (267)
T cd06284 39 SDPEREQEYLDLLRRKQADGIILLDGSL-----PPTALTALAKLPPIVQACEYIPGLAVPSVSIDNVAAARLAVDHLISL 113 (267)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHH
T ss_conf 9989999999999847998599827889-----99999998479999998677888999889967899999999999970
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 2443200123433431788999999987530233
Q gi|254780276|r 96 GADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 96 Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
|..-+.++.......+..+-.+-|.+.+...+++
T Consensus 114 G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~ 147 (267)
T cd06284 114 GHRRIALITGPRDNPLARDRLEGYRQALAEAGLP 147 (267)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 9976999628888725999999999999983998
No 250
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=85.98 E-value=3.1 Score=22.30 Aligned_cols=170 Identities=18% Similarity=0.119 Sum_probs=101.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCC--CCCCHHHHHHHHHHHHHH
Q ss_conf 886899999999999976998999867232501089999999865431101234430036--741027899997534321
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAG--IGSNNTRESVELAQYAHS 94 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~g--v~~~~~~~~i~~a~~a~~ 94 (292)
...-.+.++++++...+.|+.++.+.-. +..+.+...+..+-++-.++| -|...++.-+..++.|-+
T Consensus 17 ~~~T~~~i~~lc~~A~~~~~aaVCV~P~-----------~V~~a~~~L~~s~v~v~tVigFP~G~~~~~~K~~E~~~ai~ 85 (221)
T PRK00507 17 PEATEEDIDKLCEEAKEYGFASVCVNPS-----------YVKLAAELLKGSDVKVCTVIGFPLGASTTAVKAFEAKDAIA 85 (221)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEECHH-----------HHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8799999999999999879948998989-----------99999998448998655781369999957689999999998
Q ss_pred CCCCCCCEECCC-CCC-CCHHHHHHHHHHHHHHHC-CCC-EEEECHHHCCCCCCHHHHHHHHHHC--CHHHHHHCCCC--
Q ss_conf 024432001234-334-317889999999875302-330-1210011111211106899974320--30233100122--
Q gi|254780276|r 95 IGADALLVVIPY-YNK-PNRRGLLAHFGEIATTVS-SPI-YIYNNPSRTVIEMDVDTMAELAATY--PNIVGVKDATG-- 166 (292)
Q Consensus 95 ~Gad~i~v~~P~-~~~-~~~~~i~~~~~~i~~~~~-~pi-~iYn~P~~~g~~~~~~~l~~L~~~~--pni~giK~~~~-- 166 (292)
.|||-+=+..++ +++ ...+.+.+-.+++.++++ .++ +|-..+. ++.+.+.+.++-. -..-.||-|+|
T Consensus 86 ~GAdEiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~-----Lt~~ei~~a~~~~~~aGadfvKTSTGf~ 160 (221)
T PRK00507 86 NGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGKVLKVIIETCL-----LTDEEKVKACEICKEAGADFVKTSTGFS 160 (221)
T ss_pred CCCCEEEEECCHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC-----CCHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 59987774025999975848899999999998727673699974465-----9999999999999982978786058878
Q ss_pred ----CHHHHHHHHHHCCCCEEE--CCCCC--CCHHHHHHHCCCC
Q ss_conf ----113589999735984032--01322--1001243203344
Q gi|254780276|r 167 ----KIELVSEQRLSCGFDFIQ--LSGED--SSALGFNAHGGVG 202 (292)
Q Consensus 167 ----~~~~~~~~~~~~~~~~~v--~~G~~--~~~~~~~~~G~~G 202 (292)
.++.+..+++..++++.+ ..|-- ......+..|++-
T Consensus 161 ~~gat~e~v~~m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~r 204 (221)
T PRK00507 161 TGGATVEDVKLMRETVGPRVGVKASGGIRTLEDALAMIEAGATR 204 (221)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCHH
T ss_conf 89989999999999728786386778989999999999827513
No 251
>PRK06843 inositol-5-monophosphate dehydrogenase; Validated
Probab=85.97 E-value=2.2 Score=23.36 Aligned_cols=126 Identities=11% Similarity=0.086 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCH
Q ss_conf 123443003674102789999753432102443200123433431788999999987530-2330121001111121110
Q gi|254780276|r 67 VASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDV 145 (292)
Q Consensus 67 ~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~ 145 (292)
.++|+.+-+.++ ...+.+++++..-++|+|.+.+-.. ......+.++.+.|-+.. ++||+.=| .-+.
T Consensus 138 ~~~rl~VgAAVg--~~~d~~era~~Lv~AGvD~lvID~A---hGhs~~~~e~ik~ik~~~p~v~VIaGN-------VaT~ 205 (404)
T PRK06843 138 LNSKLRVGAAVS--IDIDTIERVEELVKAHVDILVIDSA---HGHSTRIIELVKTIKNKYPNLDLIAGN-------IVTK 205 (404)
T ss_pred HHCCEEEEEEEC--CCHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHHCCCCCEEECC-------CCCH
T ss_conf 324676899954--6852899999999769999999688---752178999999999767996166303-------0579
Q ss_pred HHHHHHHHHCCHHHHHHCCC--CC-----------HHHH---HHHHHH-CCCCEEEC-CC---CCCCHHHHHHHCCCCCC
Q ss_conf 68999743203023310012--21-----------1358---999973-59840320-13---22100124320334455
Q gi|254780276|r 146 DTMAELAATYPNIVGVKDAT--GK-----------IELV---SEQRLS-CGFDFIQL-SG---EDSSALGFNAHGGVGCI 204 (292)
Q Consensus 146 ~~l~~L~~~~pni~giK~~~--~~-----------~~~~---~~~~~~-~~~~~~v~-~G---~~~~~~~~~~~G~~G~i 204 (292)
+..+.|.+ - ..-++|-.- |. ..+. .+.... .+..+.++ .| ....+.-++..|++..+
T Consensus 206 ~~a~~Li~-a-GAD~VkVGiGpGsiCTTr~v~GvGvPq~tAi~d~~~~a~~~~v~IIADGGI~~sGDi~KAlA~GAdaVM 283 (404)
T PRK06843 206 EAALDLIN-V-GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVM 283 (404)
T ss_pred HHHHHHHH-H-CCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCCEEE
T ss_conf 99999998-1-989999565478772566545868748999999999960579978836874653279999971898888
Q ss_pred CC
Q ss_conf 22
Q gi|254780276|r 205 SV 206 (292)
Q Consensus 205 s~ 206 (292)
.|
T Consensus 284 lG 285 (404)
T PRK06843 284 IG 285 (404)
T ss_pred EC
T ss_conf 67
No 252
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.96 E-value=3.1 Score=22.29 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=58.8
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCC-CCHHHHHHHHHHHHHHHCCCCEE--E----
Q ss_conf 234430036-74102789999753432102443200------1234334-31788999999987530233012--1----
Q gi|254780276|r 68 ASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNK-PNRRGLLAHFGEIATTVSSPIYI--Y---- 133 (292)
Q Consensus 68 ~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~-~~~~~i~~~~~~i~~~~~~pi~i--Y---- 133 (292)
+++..+|+| |+-.|-+.+.+.|+..++.|++...- ..|+-|+ +.. +=.++++++.+..++|++- .
T Consensus 25 ~~~~~~IAGPC~iEs~e~~~~~A~~lk~~g~~~~r~~~fK~RTs~~sfrG~G~-egL~~L~~vk~~~glpi~TdVh~~~q 103 (266)
T PRK13398 25 GEEKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGE-EGLKILKEVGDKYNMPVVTEVMDTRD 103 (266)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEEECCHHH
T ss_conf 99548997577207999999999999983334333754158999855568858-89999999998729954777458376
Q ss_pred -----------ECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf -----------0011111211106899974320302331001
Q gi|254780276|r 134 -----------NNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 134 -----------n~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
++|.+. --..+++.++++ ....+-+|..
T Consensus 104 ~~~v~~~vDvlQIpAfl--~rqtdLl~a~a~-t~kpV~iKkg 142 (266)
T PRK13398 104 VEEVADYIDMLQIGSRN--MQNFELLKEVGK-TKKPILLKRG 142 (266)
T ss_pred HHHHHHHHHHEEECCHH--CCCHHHHHHHHH-HCCCEEECCC
T ss_conf 99999751011225042--279899999997-0996673487
No 253
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=85.88 E-value=3.2 Score=22.27 Aligned_cols=77 Identities=13% Similarity=0.151 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999999997699899986723250108999999986543110123443003674102789999753432102443
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~ 99 (292)
+.+-+.+..+.+.+.|+|.|++--.+| .|+...-.+++....+.++.++||-.++-+ ++--+..-.-.|-++|+|.
T Consensus 153 t~~yy~~~ak~l~~~G~d~i~IKDmAG---ll~P~~a~~LV~~lk~~~g~d~pI~~HtH~-T~G~~~~~~l~AieAGvDi 228 (499)
T PRK12330 153 TTEGFVEQAKRLLDMGCDSICIKDMAA---LLKPQPAYDLVKGIKEACGPDTRVHVHAHA-TTGVTLVSLMKAIEAGVDV 228 (499)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCC---CCCHHHHHHHHHHHHHHCCCCCCEEEECCC-CCCHHHHHHHHHHHCCCCE
T ss_conf 899999999999975999899847534---678899999999999863899837985178-8746999999999849988
Q ss_pred C
Q ss_conf 2
Q gi|254780276|r 100 L 100 (292)
Q Consensus 100 i 100 (292)
|
T Consensus 229 v 229 (499)
T PRK12330 229 V 229 (499)
T ss_pred E
T ss_conf 7
No 254
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=85.86 E-value=3.2 Score=22.26 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=13.7
Q ss_pred HHHHHHHHCCCCCCCEEC
Q ss_conf 975343210244320012
Q gi|254780276|r 87 ELAQYAHSIGADALLVVI 104 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~~ 104 (292)
+-|+.|+++|+|+|-+..
T Consensus 153 ~AA~rA~~AGFDgVEIH~ 170 (363)
T COG1902 153 RAARRAKEAGFDGVEIHG 170 (363)
T ss_pred HHHHHHHHCCCCEEEEEE
T ss_conf 999999983999899840
No 255
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=85.63 E-value=3.2 Score=22.18 Aligned_cols=114 Identities=19% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECC-------CCCCHHCCCHHHHHHH-----------------HHHH---------HH
Q ss_conf 6899999999999976998999867-------2325010899999998-----------------6543---------11
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAG-------TTGESSTLSHEEHCRI-----------------IELC---------VK 65 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G-------~tGE~~~Ls~~Er~~~-----------------~~~~---------~~ 65 (292)
...+.+.+.++.+-+.|.+.-.+-| -.|+-..+...+-.++ -+.. ++
T Consensus 9 a~~~~i~~v~~~~~~~G~~~~~~~G~~~tiig~iGd~~~~~~~~~~~~~p~Ve~v~~i~~pyKl~sre~~~~~~~~~~v~ 88 (352)
T PRK13396 9 TPEAEIERISQELTSWGLTPEKIVGKHKVVIGLVGDTAELDPLQIQELSPWIEQVLRVEKPFKRASLEYRHGEASEVVVP 88 (352)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCCCCCCCCEEEE
T ss_conf 89999999999999679855895389648999989866668788976273411775568723366653166899863995
Q ss_pred CCC-------CC-CCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 012-------34-430036-74102789999753432102443200------1234334317889999999875302330
Q gi|254780276|r 66 TVA-------SR-VPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNKPNRRGLLAHFGEIATTVSSPI 130 (292)
Q Consensus 66 ~~~-------~r-~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~~~~~~i~~~~~~i~~~~~~pi 130 (292)
..+ ++ +-+|+| |+-.|-++.++.|+..+++|++.+-- ..||-|..--++=.++.+++.+.+++|+
T Consensus 89 ~~~G~v~~G~~~~~~iiAGPCsvEs~eq~~~~A~~vk~~Ga~~lRgGa~KPRTsPysFqGlGeeGL~~L~~ak~e~GLpv 168 (352)
T PRK13396 89 TPNGPVTFGENHPVVVVAGPCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGI 168 (352)
T ss_pred CCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 68987774799779999678756899999999999998399878265024789985435870879999999999869972
Q ss_pred EE
Q ss_conf 12
Q gi|254780276|r 131 YI 132 (292)
Q Consensus 131 ~i 132 (292)
+-
T Consensus 169 vT 170 (352)
T PRK13396 169 IT 170 (352)
T ss_pred EE
T ss_conf 68
No 256
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=85.55 E-value=3.3 Score=22.16 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=73.8
Q ss_pred CEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCC--CHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 0011120177389888-6899999999999976998999867232--501089999999865431101234430036741
Q gi|254780276|r 3 RGSIPALITPFTKGNL-IDEDAFVEHIEWQITEGSGGLVPAGTTG--ESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS 79 (292)
Q Consensus 3 ~Gi~~~~~TPf~~d~~-iD~~~~~~~i~~l~~~gv~gi~~~G~tG--E~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~ 79 (292)
=||+...+-=|-+.|. .|.+...++++.+++.|++-|=++|-.. -....|.+|-.+=+.-+++....+..+++.+-.
T Consensus 4 MGIlNvTpDSFsdgg~~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~is~~eE~~Rl~pvi~~l~~~~~~~iSIDT 83 (257)
T cd00739 4 MGILNVTPDSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISVDT 83 (257)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99984889989899858899999999999998799899979875899998699888898899999999860798289979
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 027899997534321024432001234334317889999999875302330121001
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
.+. +-++.|-++|++.+-=+.- ...+.++. +++...+.|+++-+.+
T Consensus 84 ~~~----~Va~~al~~Ga~iINDisg---~~~d~~m~----~~va~~~~~~ilmH~~ 129 (257)
T cd00739 84 FRA----EVARAALEAGADIINDVSG---GSDDPAML----EVAAEYGAPLVLMHMR 129 (257)
T ss_pred CCH----HHHHHHHHCCCCEEECCCC---CCCCHHHH----HHHHHHCCCEEEECCC
T ss_conf 975----9999999849989975342---44777899----9999849999997689
No 257
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=85.54 E-value=1 Score=25.82 Aligned_cols=79 Identities=8% Similarity=0.030 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
.+..++.+-..-+...|..|+.+.|.+----..-.+-..+.++...+..+ ..+.++||-.. + +.++..++.++|
T Consensus 39 vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~--l~inaHvGfvd-E---~~~eklk~~~vd 112 (275)
T COG1856 39 VTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTG--LLINAHVGFVD-E---SDLEKLKEELVD 112 (275)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHC--EEEEEEEEECC-H---HHHHHHHHHCCC
T ss_conf 32577888999998457605897578687997428999999999877537--48999851001-7---889999871686
Q ss_pred CCCEE
Q ss_conf 32001
Q gi|254780276|r 99 ALLVV 103 (292)
Q Consensus 99 ~i~v~ 103 (292)
.+++-
T Consensus 113 vvsLD 117 (275)
T COG1856 113 VVSLD 117 (275)
T ss_pred EEEEE
T ss_conf 89986
No 258
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=85.46 E-value=2.8 Score=22.66 Aligned_cols=118 Identities=17% Similarity=0.208 Sum_probs=49.8
Q ss_pred CCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 77389888-68999999999999769989998672325010899999998654311012344300367410278999975
Q gi|254780276|r 11 TPFTKGNL-IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELA 89 (292)
Q Consensus 11 TPf~~d~~-iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a 89 (292)
+-|.+-|. -..+.+..-.+-....|+..++.+-.|.... -+.+.-....+.+.+..--+.-+..++.... ..+..
T Consensus 12 vH~r~pg~~~~ked~~s~t~AAa~GGvTtv~~mPnt~p~~-~~~~~~~~~~~~a~~~~~vd~~~~~~~~~~~---~~~el 87 (337)
T cd01302 12 VHLRDPGGTTYKEDFESGSRAAAAGGVTTVIDMPNTGPPP-IDLPAIELKIKLAEESSYVDFSFHAGIGPGD---VTDEL 87 (337)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC-CCHHHHHHHHHHHHCCCCEEEEEEEEEECCC---CHHHH
T ss_conf 3257899988643599999999848800799898999998-9899999999986136863576688861575---57789
Q ss_pred HHHHHCCCCCCCEECCC----CCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 34321024432001234----334317889999999875302330121
Q gi|254780276|r 90 QYAHSIGADALLVVIPY----YNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 90 ~~a~~~Gad~i~v~~P~----~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
....+.|+.++-+...+ ....++..+.+-++.+. ..+.+++++
T Consensus 88 ~~~~~~g~~~~k~f~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~~H 134 (337)
T cd01302 88 KKLFDAGINSLKVFMNYYFGELFDVDDGTLMRTFLEIA-SRGGPVMVH 134 (337)
T ss_pred HHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCEEEEH
T ss_conf 99887673202289873378765479999999999887-579979970
No 259
>PRK07534 methionine synthase I; Validated
Probab=85.39 E-value=3.3 Score=22.10 Aligned_cols=107 Identities=20% Similarity=0.168 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCC----CHHHHHHHHHHHHHC----C--CCCCCCCCCCCCC----------
Q ss_conf 9999999999997699899986723250108----999999986543110----1--2344300367410----------
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTL----SHEEHCRIIELCVKT----V--ASRVPVMAGIGSN---------- 80 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~L----s~~Er~~~~~~~~~~----~--~~r~pii~gv~~~---------- 80 (292)
-+.+++.=+-++++|.+-|..+-...-...| ..++-.++.+.+++. + .++-.+|+|.-++
T Consensus 44 Pd~V~~iH~dyi~AGAdVI~TNTy~a~~~~L~~~~~e~~~~eln~~Av~lAr~Aa~~~~~~v~VAGSigP~g~~~~p~~~ 123 (335)
T PRK07534 44 PDKIRALYQGAVDAGSDIFLTNSFGGTAARLKLHEAQDRVHELNRRAAEIGREVADKAGRKVIVAGSVGPTGEIMEPMGA 123 (335)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 59999999999996599998077614699997657389999999999999999987329967999436776664577789
Q ss_pred -HHHHH----HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf -27899----99753432102443200123433431788999999987530233012
Q gi|254780276|r 81 -NTRES----VELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 81 -~~~~~----i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
+.+++ .++++...+.|+|.+++=.- ++-+++..- .+.+..+++|++.
T Consensus 124 ~~~~e~~~~f~eq~~~L~~~gvDlil~ETm----~~i~E~~aa-~~a~~~~~~P~~~ 175 (335)
T PRK07534 124 LTHAEAVEMFHEQAEGLKAGGADVLWVETI----SAPEEFRAA-AEAAALAGMPWCG 175 (335)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCEEEHHHH----HHHHHHHHH-HHHHHHCCCCEEE
T ss_conf 999999999999999987369989955998----749999999-9998855998899
No 260
>PRK13131 consensus
Probab=85.21 E-value=3.4 Score=22.05 Aligned_cols=184 Identities=15% Similarity=0.113 Sum_probs=101.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHC--------C---CHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----25010--------8---9999999865431101234430036
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESST--------L---SHEEHCRIIELCVKTVASRVPVMAG 76 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~--------L---s~~Er~~~~~~~~~~~~~r~pii~g 76 (292)
||---|--|.+...+.++.+.++|++-|=++=-. .++.. | +.....++++.+.+. ..++|++.=
T Consensus 15 ~yitaG~P~~e~s~~~~~~l~~~GadiiEiGiPFSDP~ADGpvIQ~a~~rAL~~g~~~~~~~~~~~~r~~-~~~~pivlM 93 (257)
T PRK13131 15 PFVTLGDPNYELSFEIIKTLIISGVSALELGFAFSDPVADGITIQASHLRALKHASMAKNFQLLKKIRDY-NHHIPIGLL 93 (257)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCCEEEE
T ss_conf 8861868998899999999997799999978998885545599999999999789889999999998704-999888999
Q ss_pred CCCCHH--HHHHHHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 741027--899997534321024432001-23433431788999999987530233012100111112111068999743
Q gi|254780276|r 77 IGSNNT--RESVELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 77 v~~~~~--~~~i~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
.--+.. ...-++++.|+++|+||+++. .| .+|- +-|.+.++..++..+.-=.|. -+.+-+.++++
T Consensus 94 ~Y~N~i~~yG~e~F~~~~~~~GvdGvIipDLP------~eE~-~~~~~~~~~~~l~~I~lvaPt-----t~~~Ri~~i~~ 161 (257)
T PRK13131 94 AYANLIFSYGVDGFYAQAKECGVDSVLIADMP------LIEK-ELVIKSAQKHQIKQIFIASPN-----ASVKDLEQVAT 161 (257)
T ss_pred CCHHHHHHHCHHHHHHHHHHCCCCCEECCCCC------HHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 27689998579999999986599856558999------6788-999999997798479972899-----98899999983
Q ss_pred HCCHHH---------HHHCCCC-CH-HHHHHHHHHCCCCEEECCCC--CCCHHHHHHHCCCCCCCCCC
Q ss_conf 203023---------3100122-11-35899997359840320132--21001243203344552222
Q gi|254780276|r 154 TYPNIV---------GVKDATG-KI-ELVSEQRLSCGFDFIQLSGE--DSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~---------giK~~~~-~~-~~~~~~~~~~~~~~~v~~G~--~~~~~~~~~~G~~G~is~~~ 208 (292)
.-..++ |.+.... +. +.+.++++..+..+.+--|- .++.-.....|++|++.|++
T Consensus 162 ~s~GFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~gaDGvIVGSa 229 (257)
T PRK13131 162 HSQGYIYTLARSGVTGASHTLENDASAIIKTLKTFSPTPALLGFGISKKEHITNAKGMGADGVICGSA 229 (257)
T ss_pred CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 58974999845767798643407699999999966899879980579889999998559999998789
No 261
>PRK10936 periplasmic sensory protein associated with the TorRS two-component regulatory system; Provisional
Probab=85.16 E-value=3.4 Score=22.03 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 1773898886899999999999976998999867232501
Q gi|254780276|r 10 ITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESS 49 (292)
Q Consensus 10 ~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~ 49 (292)
++-|+..+.-|.+...+.++.++..|+|+|.++....+..
T Consensus 78 l~v~~a~~~~d~~~Q~~qie~~i~~~vDAIil~~vd~~a~ 117 (340)
T PRK10936 78 LKVLEAGGYYNLATQQQQLEQCVAWGADAILLGAVTPDGP 117 (340)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCH
T ss_conf 9998589988999999999999975999999867883411
No 262
>PRK00915 2-isopropylmalate synthase; Validated
Probab=85.10 E-value=3.4 Score=22.01 Aligned_cols=35 Identities=6% Similarity=-0.078 Sum_probs=18.0
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHH
Q ss_conf 6899999999999976998999867232501089999999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCR 58 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~ 58 (292)
+..+.=.++.+.|.+.||+-|=++ ++..|..|+..
T Consensus 23 fs~e~K~~Ia~~L~~~GV~~IE~G-----~P~~s~~d~e~ 57 (511)
T PRK00915 23 LTVEEKLQIAKQLERLGVDVIEAG-----FPASSPGDFEA 57 (511)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEE-----CCCCCHHHHHH
T ss_conf 899999999999997698989982-----67789789999
No 263
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=85.06 E-value=3.4 Score=22.00 Aligned_cols=114 Identities=15% Similarity=0.154 Sum_probs=71.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCC---CC--CCHHHHHHHHHHHHHHH--CCCCEEEECHHHC
Q ss_conf 12344300367410278999975343210244320012343---34--31788999999987530--2330121001111
Q gi|254780276|r 67 VASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYY---NK--PNRRGLLAHFGEIATTV--SSPIYIYNNPSRT 139 (292)
Q Consensus 67 ~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~---~~--~~~~~i~~~~~~i~~~~--~~pi~iYn~P~~~ 139 (292)
..+++|+++.++..+.++..+.++.+.+.|+.++=+-..-. .. -+.+.-.+..+.+.++. +.++++=-| .
T Consensus 109 ~r~~i~~y~~~~~~~~~~~~~~a~~~~~~Gf~~~K~k~~~~~~~~~~~~~~~~di~~v~~vR~~~G~~~~l~vDan---~ 185 (352)
T cd03325 109 VRDRVRVYSWIGGDRPSDVAEAARARREAGFTAVKMNATEELQWIDTSKKVDAAVERVAALREAVGPDIDIGVDFH---G 185 (352)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECC---C
T ss_conf 6774268775688998999999999996799879986777434466403199999999999998689981999889---9
Q ss_pred CCCCCHHHHHHHHHHCC--HHHHHHCCC--CCHHHHHHHHHHCCCCEEECCC
Q ss_conf 12111068999743203--023310012--2113589999735984032013
Q gi|254780276|r 140 VIEMDVDTMAELAATYP--NIVGVKDAT--GKIELVSEQRLSCGFDFIQLSG 187 (292)
Q Consensus 140 g~~~~~~~l~~L~~~~p--ni~giK~~~--~~~~~~~~~~~~~~~~~~v~~G 187 (292)
.++.+.-.++++.+. |+.-+-+-. .|.+.+.++++..+ +-+..|
T Consensus 186 --~~~~~~A~~~~~~l~~~~l~w~EeP~~~~d~~~~~~l~~~~~--~PIa~g 233 (352)
T cd03325 186 --RVSKPMAKDLAKELEPYRLLFIEEPVLPENVEALAEIAARTT--IPIATG 233 (352)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHEECCCCCCCHHHHHHHHHHCC--CCEECC
T ss_conf --989999999999861046231127889889999999998769--999717
No 264
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=85.01 E-value=3.5 Score=21.98 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=15.5
Q ss_pred CCCCCCCCCCCC--CCCCCHHHHHHHHHHHHHC
Q ss_conf 988998767888--8987989999999999855
Q gi|254780276|r 261 GRNVSLAVRSPM--VSTLEKDTMIAIDQALERL 291 (292)
Q Consensus 261 G~~~~~~~R~Pl--~~~~~~e~~~~i~~~l~~l 291 (292)
|+.+|...+.|= ...++.+..++++++|++.
T Consensus 213 ~v~mg~~~~~~e~~~~~td~~~v~~~~~~l~~~ 245 (248)
T PRK11572 213 GVSMSSDAEADEYSRYCVDGAAVAEMKGIIVRH 245 (248)
T ss_pred CCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHH
T ss_conf 985788989986515602999999999999985
No 265
>pfam00724 Oxidored_FMN NADH:flavin oxidoreductase / NADH oxidase family.
Probab=84.99 E-value=3.5 Score=21.98 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=47.7
Q ss_pred EECCCCCCC-CCCCCCCHHHHHHHHHHHHHCCCCEEEECCC--------CCCHHCCCHHHHHHHHHHHHHCCCC-CCCCC
Q ss_conf 111201773-8988868999999999999769989998672--------3250108999999986543110123-44300
Q gi|254780276|r 5 SIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGT--------TGESSTLSHEEHCRIIELCVKTVAS-RVPVM 74 (292)
Q Consensus 5 i~~~~~TPf-~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~--------tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii 74 (292)
+++|+.+.+ +.||.+....+. +.......|+--|...++ ..-...+..+|...-++.+++.+.. ...++
T Consensus 18 ~~apm~~~~~~~dG~~t~~~~~-~y~~rA~gG~GlIi~e~~~V~~~~~~~~~~~~i~~d~~i~~~~~l~~~vh~~G~~i~ 96 (336)
T pfam00724 18 VMAPMTRLRALEDGTVPERLAE-YYSQRAQGGGTLIITEAVFVDPKGGGFDNQPGLWDDEQVEGWKKLTEAVHENGSKIG 96 (336)
T ss_pred EECCCCCCCCCCCCCCCHHHHH-HHHHHHCCCCCEEEECCCEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 7611077633589999999999-999996469748996871788200579998746768999999999999985598499
Q ss_pred CCC---CCCH-----------------------------------HHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 367---4102-----------------------------------7899997534321024432001
Q gi|254780276|r 75 AGI---GSNN-----------------------------------TRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 75 ~gv---~~~~-----------------------------------~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
++. |..+ .++-.+-|+.|+++|+|||.+.
T Consensus 97 ~QL~H~Gr~~~~~~~~~~~~~~s~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh 163 (336)
T pfam00724 97 VQLWHLGREAPPEYLEDLGLRPSDPSALPASIKVRELTKEEIKEIIQEFVQAAKRAVEAGFDGVEIH 163 (336)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 9703577768823378888888787667889888769999999999999999999998299989961
No 266
>pfam04551 GcpE GcpE protein. In a variety of organisms, including plants and several eubacteria, isoprenoids are synthesized by the mevalonate-independent 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway. Although different enzymes of this pathway have been described, the terminal biosynthetic steps of the MEP pathway have not been fully elucidated. GcpE gene of Escherichia coli is involved in this pathway.
Probab=84.91 E-value=3.5 Score=21.95 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=69.5
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 11120177389888689999999999997699899986723250108999999986543110123443003674102789
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRE 84 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~ 84 (292)
=-|..+--+++..+-|.++.-+.+..|.++|++-+=+.-. +. |-.+-+...++. -.+|+++-+ +++-+-
T Consensus 14 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvavp-------~~-~~a~al~~I~~~--~~iPlVADI-HF~~~l 82 (345)
T pfam04551 14 DAPISVQSMTNTDTRDVEATVAQIKRLEEAGCDIVRVAVP-------DM-EAAEALKEIKKQ--SPIPLVADI-HFDYRL 82 (345)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC-------CH-HHHHHHHHHHHH--CCCCCEEEC-CCCHHH
T ss_conf 8957667568998620899999999999859998998879-------99-999849999985--899714004-248999
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCCCCCHHHHHHH
Q ss_conf 999753432102443200123433431788999999987530---2330121001111121110689997
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVIEMDVDTMAEL 151 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~~~~~~~l~~L 151 (292)
++ .|.+.|+|.+-+=|--+- + .+-|++|.+++ ++||=+==| .| .++.+++.+.
T Consensus 83 Al----~a~~~g~~kiRINPGNig--~----~~~~~~vv~~ak~~~~pIRIGvN---~G-SL~~~~l~ky 138 (345)
T pfam04551 83 AL----EAIEAGVDKIRINPGNIG--R----REKVKEVVEAAKERGIPIRIGVN---SG-SLEKRILEKY 138 (345)
T ss_pred HH----HHHHHHHCCCCCCCCCCC--C----HHHHHHHHHHHHHCCCCEEEECC---CC-CCCHHHHHHC
T ss_conf 99----999862201567997748--6----78789999999983997898326---77-7688999870
No 267
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=84.88 E-value=3.5 Score=21.95 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 899999999999976998999867
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAG 43 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G 43 (292)
|.+...+.++.+++.+++|+.+..
T Consensus 40 ~~~~e~~~i~~~~~~~vdgiI~~~ 63 (267)
T cd01536 40 DVSKQIQQIEDLIAQGVDGIIISP 63 (267)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999999975999999931
No 268
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.78 E-value=3.5 Score=21.91 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 868999999999999769989998672325010899999998654-----311012344300367410278999975343
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYA 92 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a 92 (292)
.-|.+.....++.+++.+++|+.+.++. .+......+.+. +++......+-+..|...+..-+.+.+++.
T Consensus 38 ~~~~~~e~~~i~~l~~~~vdgiIi~~~~-----~~~~~~~~l~~~~iPvV~id~~~~~~~~~~~V~~Dn~~a~~~a~~~L 112 (270)
T cd06296 38 GRRTSPERQWVERLSARRTDGVILVTPE-----LTSAQRAALRRTGIPFVVVDPAGDPDADVPSVGATNWAGGLAATEHL 112 (270)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHHHH
T ss_conf 9996999999999995499999990688-----99999999997499999987888888898689957699999999999
Q ss_pred HHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 210244320012-343343178899999998753
Q gi|254780276|r 93 HSIGADALLVVI-PYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 93 ~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~ 125 (292)
-+.|..-+..+. |.-...+.+-...|-+.+.++
T Consensus 113 ~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~ 146 (270)
T cd06296 113 LELGHRRIGFITGPPDLLCSRARLDGYRAALAEA 146 (270)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9858972888459988655999999999999986
No 269
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family; InterPro: IPR011288 This entry describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4 , .; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0019512 lactose catabolic process via tagatose-6-phosphate.
Probab=84.66 E-value=2.3 Score=23.23 Aligned_cols=31 Identities=13% Similarity=0.327 Sum_probs=12.9
Q ss_pred HHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCC
Q ss_conf 976998999867232501089999999865431101
Q gi|254780276|r 32 ITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTV 67 (292)
Q Consensus 32 ~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~ 67 (292)
+.+|++.+.+=|| .|+++|-..+++.|+|.|
T Consensus 92 v~aGvkS~MIDaS-----Hl~F~~Nv~lvk~VVdFc 122 (282)
T TIGR01858 92 VAAGVKSVMIDAS-----HLPFEQNVKLVKEVVDFC 122 (282)
T ss_pred HHCCCCEEEECCC-----CCCHHHHHHHHHHHHHHH
T ss_conf 7537723556577-----788888778866666442
No 270
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=84.64 E-value=3.2 Score=22.22 Aligned_cols=167 Identities=18% Similarity=0.166 Sum_probs=84.4
Q ss_pred HHHHHHHHHCCCCEEEECCCC----CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999997699899986723----2501089999999865431101234430036741027899997534321024432
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTT----GESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~t----GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i 100 (292)
...++.+.+.|++.+.+.--. |...+ .++++...+.+ .+|+-+|-|=.+.++ ++.+-+.|++-+
T Consensus 34 ~~~a~~~~~~Ga~~lhivDLd~a~~g~~~n------~~~I~~i~~~~--~~pi~vGGGIrs~~~----i~~~l~~Ga~kv 101 (240)
T PRK13585 34 VEVAKRWVDAGAKTLHLVDLDGAFEGSRKN------ADIIEKIVEAT--DVSIQLGGGIRSVED----AASLLDLGVDRV 101 (240)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCH------HHHHHHHHHHC--CCCEEEECCCCCHHH----HHHHHHCCCCEE
T ss_conf 999999998799979999897721189444------99999999737--977899788587999----999997699899
Q ss_pred CEECCCCCCCCHHHHHHHHHHH-----HHHHCC---CCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------CC--
Q ss_conf 0012343343178899999998-----753023---3012100111112111068999743203023310------01--
Q gi|254780276|r 101 LVVIPYYNKPNRRGLLAHFGEI-----ATTVSS---PIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------DA-- 164 (292)
Q Consensus 101 ~v~~P~~~~~~~~~i~~~~~~i-----~~~~~~---pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------~~-- 164 (292)
.+-.-.+..+ +.+.+-.+.. .-+.|. .+.++.... ...+++..+.+...+.+ +-.+- +.
T Consensus 102 vigs~~~~~~--~~~~~i~~~~G~~~ivvsiD~k~~~v~~~gw~~--~~~~~~~e~~~~~~~~g-~~eii~tdI~~dGt~ 176 (240)
T PRK13585 102 ILGTAAIENP--ELVRELSDEFGSERVMVSLDAKDGEVVIEGWTE--STGKDPVEWAQRFEELG-AGSILFTNVDVEGLL 176 (240)
T ss_pred EECCCCHHCC--HHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCC--CCCCCHHHHHHHHHHCC-CCEEEEEEECCHHHH
T ss_conf 9398113184--288999987397217999993065023247656--78863557778888638-735898642332232
Q ss_pred -CCCHHHHHHHHHHCCCCEEECCCCCC--CHHHHHHHCCCCCCCCCC
Q ss_conf -22113589999735984032013221--001243203344552222
Q gi|254780276|r 165 -TGKIELVSEQRLSCGFDFIQLSGEDS--SALGFNAHGGVGCISVTA 208 (292)
Q Consensus 165 -~~~~~~~~~~~~~~~~~~~v~~G~~~--~~~~~~~~G~~G~is~~~ 208 (292)
..|.+.+.++.+...-++....|... .+...-..|++|++.|.+
T Consensus 177 ~G~d~~~~~~i~~~~~~pviasGGv~s~~di~~l~~~g~~gvivG~A 223 (240)
T PRK13585 177 QGVNPEPVRELVDSVDIPVIASGGVTSLDDVKALKEAGAAGVVVGSA 223 (240)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEHH
T ss_conf 57898999999986899999988999999999999789978998768
No 271
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=84.33 E-value=3.7 Score=21.78 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHH---HHHHHCCCCC---CCCCCCCCCCHHHHHHHHH
Q ss_conf 888689999999999997699899986723250108999999986---5431101234---4300367410278999975
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII---ELCVKTVASR---VPVMAGIGSNNTRESVELA 89 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~---~~~~~~~~~r---~pii~gv~~~~~~~~i~~a 89 (292)
|..-|.+.-.+.++.+++.||+|++...+.+.... ..+..+-. -......... .+.+..++..+.......+
T Consensus 39 ~~~~~~~~~~~~i~~l~~~~vd~ii~~~~~~~~~~--~~~~~~~~~iPvv~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 116 (269)
T cd01391 39 DSQSDPERALEALRDLIQQGVDGIIGPPSSSSALA--VVELAAAAGIPVVSLDATAPDLTGYPYVFRVGPDNEQAGEAAA 116 (269)
T ss_pred ECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHH--HHHHHHHCCCEEEEECCCCCCCCCCCCEEEEEECHHHHHHHHH
T ss_conf 49999999999999999749999994688744489--9999997698199967887877788865899858899999998
Q ss_pred HHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCE-EEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCC
Q ss_conf 343210244320012343343178899999998753023301-210011111211106899974320302331001221
Q gi|254780276|r 90 QYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIY-IYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGK 167 (292)
Q Consensus 90 ~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~-iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~ 167 (292)
++..+.|..-+.++....... ..+-.+-|++..+..++++. .+..+. ...-..+.+.++.+..++..+| .+..|
T Consensus 117 ~~l~~~g~~~i~~i~~~~~~~-~~~r~~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~ai-~~~~d 191 (269)
T cd01391 117 EYLAEKGWKRVALIYGDDGAY-GRERLEGFKAALKKAGIEVVAIEYGDL--DTEKGFQALLQLLKAAPKPDAI-FACND 191 (269)
T ss_pred HHHHHHCCCEEEEECCCCCHH-HHHHHHHHHHHHHHCCCCEEEEEEECC--CCCHHHHHHHHHHHHCCCCEEE-EECCH
T ss_conf 689871896169973798577-999999999999986998679997134--3214899999998618997399-98888
No 272
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=84.25 E-value=2.3 Score=23.24 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHHHCC-CCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 868999999999999769-9899986723250108999999986543110123-44300367410278999975343210
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEG-SGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIGSNNTRESVELAQYAHSI 95 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~g-v~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~~~~~~~~i~~a~~a~~~ 95 (292)
..|...+...++-.++.| |.-+-.--. ..+..|+.+..+...+.+.. .+|+|+. +....|...
T Consensus 22 ~~d~~~~~~~l~~aL~~g~Va~vqlR~k-----~~d~~~~~~~a~~L~~lc~~~gv~lIIN----------D~~dlA~~~ 86 (221)
T PRK06512 22 IADGAALAKLLRAALSGGDVASVILPDY-----GLDEATFQKQAEKYVPVIQEAGAAALIA----------GDTRIAGRV 86 (221)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEECC-----CCCHHHHHHHHHHHHHHHHHCCCCEEEC----------CCHHHHHHC
T ss_conf 7466789999999984698559997579-----9999999999999999999829919988----------979999970
Q ss_pred CCCCCCEE
Q ss_conf 24432001
Q gi|254780276|r 96 GADALLVV 103 (292)
Q Consensus 96 Gad~i~v~ 103 (292)
|+|||-+.
T Consensus 87 gADGVHlG 94 (221)
T PRK06512 87 KADGLHIE 94 (221)
T ss_pred CCCEEEEC
T ss_conf 99866526
No 273
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=84.18 E-value=3.7 Score=21.73 Aligned_cols=102 Identities=14% Similarity=0.083 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEECHHHCCCCCCHH
Q ss_conf 34430036741027899997534321024432001234334317889999999875302--3301210011111211106
Q gi|254780276|r 69 SRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS--SPIYIYNNPSRTVIEMDVD 146 (292)
Q Consensus 69 ~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~--~pi~iYn~P~~~g~~~~~~ 146 (292)
+++|+...++..++++..+.++.+.+.|+.++=+-.- .+.++=++..+.+.++.+ +++++=-| ..++++
T Consensus 73 ~~i~~~~~~~~~~~~~~~~~~~~~~~~G~~~~Kikvg----~~~~~d~~~v~~ir~~~g~~~~l~vDan-----~~~~~~ 143 (265)
T cd03315 73 DRVRVAHMLGLGEPAEVAEEARRALEAGFRTFKLKVG----RDPARDVAVVAALREAVGDDAELRVDAN-----RGWTPK 143 (265)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECC----CCHHHHHHHHHHHHHHCCCCCEEEECCC-----CCCCHH
T ss_conf 9769999779999999999999999759998999768----9859999999999987299967985787-----788999
Q ss_pred HHHHHHHHCC--HHHHHHCCC--CCHHHHHHHHHHCC
Q ss_conf 8999743203--023310012--21135899997359
Q gi|254780276|r 147 TMAELAATYP--NIVGVKDAT--GKIELVSEQRLSCG 179 (292)
Q Consensus 147 ~l~~L~~~~p--ni~giK~~~--~~~~~~~~~~~~~~ 179 (292)
.-.++++.+. ++..+-+.. .|++.+.++++..+
T Consensus 144 ~A~~~~~~l~~~~i~w~EeP~~~~d~~~~~~L~~~~~ 180 (265)
T cd03315 144 QAIRALRALEDLGLDYVEQPLPADDLEGRAALARATD 180 (265)
T ss_pred HHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCCC
T ss_conf 9999998640058548847899899999999985199
No 274
>PRK08637 hypothetical protein; Provisional
Probab=84.11 E-value=2.5 Score=23.00 Aligned_cols=130 Identities=14% Similarity=0.073 Sum_probs=58.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHH-HHHHHHC----CCCCCCCCCCCCCCHHHHHHH
Q ss_conf 38988868999999999999769989998672325010899999998-6543110----123443003674102789999
Q gi|254780276|r 13 FTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRI-IELCVKT----VASRVPVMAGIGSNNTRESVE 87 (292)
Q Consensus 13 f~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~-~~~~~~~----~~~r~pii~gv~~~~~~~~i~ 87 (292)
.++++.+-.+..++..+.+-..-.... ....| ..|..+. .+.+... ...+ +...+....-..++.
T Consensus 14 ~d~~~~~~l~~v~~~~~~l~~~~~~~Y--~Pi~G------~p~~~~~~~~~~~~~~~~~~~~~--~~~~v~T~Ggt~al~ 83 (386)
T PRK08637 14 TEKGGKMFASSLDAMFNDLTPDEIFPY--APPQG------IEELRDLWQQKMLRDNPSLSGKN--MSLPIVTNALTHGLS 83 (386)
T ss_pred ECCCCCEEHHHHHHHHHHCCCCCCCCC--CCCCC------CHHHHHHHHHHHHCCCCHHHHCC--EEEEEECCCHHHHHH
T ss_conf 879998828999999973684102586--89767------29999999999836792111126--466687574689999
Q ss_pred HHHH-HHHCCCCCCCEECCCCCCCCH------------------H---HHHHHHHHHHHHHCC--CCEEEECHHH-CCCC
Q ss_conf 7534-321024432001234334317------------------8---899999998753023--3012100111-1121
Q gi|254780276|r 88 LAQY-AHSIGADALLVVIPYYNKPNR------------------R---GLLAHFGEIATTVSS--PIYIYNNPSR-TVIE 142 (292)
Q Consensus 88 ~a~~-a~~~Gad~i~v~~P~~~~~~~------------------~---~i~~~~~~i~~~~~~--pi~iYn~P~~-~g~~ 142 (292)
++-. .-+.| |-|++.-|+|-.... + .+-.+.+.+-.+.+- -+++.|.|+. ||++
T Consensus 84 ~~~~~~~~~g-d~Vlip~P~W~ny~~i~~~~~G~~v~~y~~~~~~~~~~~~~~~~~l~~~~~~~~vvll~n~phNPTG~~ 162 (386)
T PRK08637 84 LVADLFVNQG-DTVLLPDHNWGNYKLVFNTRNGANLQTYPIFDKDGHFTTDALVEALQAAYNKDKVILILNFPNNPTGYT 162 (386)
T ss_pred HHHHHHHCCC-CEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC
T ss_conf 9999984799-989991798541799999837984167742646789781999999984577883899987899988868
Q ss_pred CCHHHHHHHHH
Q ss_conf 11068999743
Q gi|254780276|r 143 MDVDTMAELAA 153 (292)
Q Consensus 143 ~~~~~l~~L~~ 153 (292)
++.+.+.+|++
T Consensus 163 ~t~ee~~~i~~ 173 (386)
T PRK08637 163 PTHKEVTTIVE 173 (386)
T ss_pred CCHHHHHHHHH
T ss_conf 99999999999
No 275
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.05 E-value=3.8 Score=21.70 Aligned_cols=28 Identities=21% Similarity=0.205 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 8689999999999997699899986723
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTT 45 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~t 45 (292)
+-|.+...+.++.++..|++||.+....
T Consensus 40 ~~d~~~Q~~~i~~~i~~~vDaIii~p~~ 67 (271)
T cd06312 40 TFDVADMARLIEAAIAAKPDGIVVTIPD 67 (271)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 8999999999999997599989993788
No 276
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=84.02 E-value=3.8 Score=21.69 Aligned_cols=179 Identities=18% Similarity=0.211 Sum_probs=86.6
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++.+.+.|++-+.+.--.+- ......-.++++..++.+ .+|+-+|=|=-+. +.++.+-+.|||-|.+-
T Consensus 29 P~~~a~~~~~~gadelhivDld~a--~~g~~~n~~~i~~i~~~~--~~pi~vGGGIrs~----~~~~~~l~~GadkVvig 100 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITAS--SEGRETMLDVVERVAEEV--FIPLTVGGGIRSL----EDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCC--CCCCCCHHHHHHHHHHHC--CCCEEEEEEEEEH----HHHHHHHHCCCCEEEEC
T ss_conf 999999999869999999706732--037700799999999867--9868998506647----99999997799789989
Q ss_pred CCCCCCCCH-HHHHHHHH--HHHHHHCC------CCEEEECHHHCCCCCCHHHHHHHHHHCC--HHHH--H-HCC---CC
Q ss_conf 234334317-88999999--98753023------3012100111112111068999743203--0233--1-001---22
Q gi|254780276|r 104 IPYYNKPNR-RGLLAHFG--EIATTVSS------PIYIYNNPSRTVIEMDVDTMAELAATYP--NIVG--V-KDA---TG 166 (292)
Q Consensus 104 ~P~~~~~~~-~~i~~~~~--~i~~~~~~------pi~iYn~P~~~g~~~~~~~l~~L~~~~p--ni~g--i-K~~---~~ 166 (292)
.-.+..+.- +++.+-|- .|.-+.|. .-.+|..-......+++..+.+-..+.+ .+.. | +|. ..
T Consensus 101 s~~~~n~~~~~~~~~~~Gsq~Iv~siD~k~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~G~geil~tdI~~DGt~~G~ 180 (243)
T cd04731 101 SAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY 180 (243)
T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 84423771435788756993099999976537896289846984412678999999998469878999872576856657
Q ss_pred CHHHHHHHHHHCCCCEEECCCCCC--CHHHHHH-HCCCCCCCCCCCC
Q ss_conf 113589999735984032013221--0012432-0334455222232
Q gi|254780276|r 167 KIELVSEQRLSCGFDFIQLSGEDS--SALGFNA-HGGVGCISVTANV 210 (292)
Q Consensus 167 ~~~~~~~~~~~~~~~~~v~~G~~~--~~~~~~~-~G~~G~is~~~n~ 210 (292)
|.+.+..+.+..+-++....|... .+...+. .|.+|++.|..-.
T Consensus 181 d~~l~~~i~~~~~~piI~sGGi~~~~di~~~l~~~~~~gv~~g~~~~ 227 (243)
T cd04731 181 DLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFH 227 (243)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHHHH
T ss_conf 99999999986899999988999999999999878982998822767
No 277
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=83.68 E-value=1.2 Score=25.20 Aligned_cols=65 Identities=20% Similarity=0.279 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCC--CH------HHHHHHHHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 1234430036741--02------78999975343210244320012-3433431788999999987530233012100
Q gi|254780276|r 67 VASRVPVMAGIGS--NN------TRESVELAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIYIYNN 135 (292)
Q Consensus 67 ~~~r~pii~gv~~--~~------~~~~i~~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~ 135 (292)
..++..+|+=+-- +| -.+-.+.++..++.||.++.|.. |.||..+. +|.+.+.+++++|+..-++
T Consensus 42 ~~~~~~vIAEvKkaSPS~G~ir~d~dp~~ia~~Ye~~GAa~iSVLTd~~~F~Gs~----e~L~~v~~~v~~PvL~KDF 115 (254)
T COG0134 42 ASGKPAVIAEVKKASPSKGLIREDFDPVEIAKAYEEGGAAAISVLTDPKYFQGSF----EDLRAVRAAVDLPVLRKDF 115 (254)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCCCH----HHHHHHHHHCCCCEEECCC
T ss_conf 3788608998615799877555559999999999973984899963766469878----9999999855898264467
No 278
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=83.57 E-value=1.4 Score=24.90 Aligned_cols=48 Identities=17% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8999975343210244320012-343343178899999998753023301210
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIYIYN 134 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn 134 (292)
-+..+.++.+++.||+++.|.+ |.||..+. +|.+.+..++++||.-=+
T Consensus 61 ~dp~~iA~~Y~~~GA~aiSVLTe~~~F~Gs~----~~L~~v~~~v~lPiLrKD 109 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQSYFGGSL----EDLKSVSSELKIPVLRKD 109 (247)
T ss_pred CCHHHHHHHHHHCCCCEEEECCCCCCCCCCH----HHHHHHHHHCCCCEEEEE
T ss_conf 9999999999977992899827856679989----999999985799847411
No 279
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=83.37 E-value=2.1 Score=23.52 Aligned_cols=112 Identities=13% Similarity=0.144 Sum_probs=53.2
Q ss_pred CCEEEEC-CCCCCHHCCCHHHHHHHHHHHHHC-CC--CCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCEECC-CCCC
Q ss_conf 9899986-723250108999999986543110-12--34430036-74102789999753432102443200123-4334
Q gi|254780276|r 36 SGGLVPA-GTTGESSTLSHEEHCRIIELCVKT-VA--SRVPVMAG-IGSNNTRESVELAQYAHSIGADALLVVIP-YYNK 109 (292)
Q Consensus 36 v~gi~~~-G~tGE~~~Ls~~Er~~~~~~~~~~-~~--~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v~~P-~~~~ 109 (292)
..|++.. ||.+-...|-.. |.+......+. .. .|.-+++. ..+.|.+.+..+ +|. .+..+|. ..++
T Consensus 58 ~~G~~tsGgs~anl~al~~A-R~~~~~~~~~~~~~~~~~~~v~~s~~aH~Sv~KAa~i------lg~-~~~~vp~d~~~~ 129 (345)
T cd06450 58 ADGVFTSGGSESNLLALLAA-RDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAY------LDV-KVRLVPVDEDGR 129 (345)
T ss_pred CCEEEECCHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHH------CCC-CEEEEECCCCCC
T ss_conf 87698275689999999999-9999888874167788876999889752899999997------489-769975399980
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEEECHHHC--CCCCCHHHHHHHHHHC
Q ss_conf 317889999999875302330121001111--1211106899974320
Q gi|254780276|r 110 PNRRGLLAHFGEIATTVSSPIYIYNNPSRT--VIEMDVDTMAELAATY 155 (292)
Q Consensus 110 ~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~--g~~~~~~~l~~L~~~~ 155 (292)
.+.+.+.+...+..++--.|+++-=.=..| |..=+.+.+.++++++
T Consensus 130 md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiD~l~~i~~i~~~~ 177 (345)
T cd06450 130 MDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKY 177 (345)
T ss_pred CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 889999999999986699738999557876762567899999999984
No 280
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=83.33 E-value=3.8 Score=21.72 Aligned_cols=115 Identities=16% Similarity=0.078 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHH
Q ss_conf 2789999753432102443200123433431788999999987530-233012100111112111068999743203023
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIV 159 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~ 159 (292)
...+.+++++..-++|+|.+.+-.- ......+.+..+.|-+.. ++||+.=|. -+.+-.+.|.+ - ..-
T Consensus 235 ~~~~~~eRa~~Lv~aGvDvlvIDtA---hGhs~~v~~~ik~ik~~~p~v~vIaGNV-------aT~~~a~~Li~-a-GAD 302 (499)
T PTZ00314 235 TREEDKERAAALIDAGVDVLVLDSS---QGNSIYQIDFIKWIKSTYPHLEVIAGNV-------VTQDQAKNLID-A-GAD 302 (499)
T ss_pred CCCCHHHHHHHHHHCCCCEEEEECC---CCCCHHHHHHHHHHHHHCCCCCEEEEEE-------CHHHHHHHHHH-C-CCC
T ss_conf 8804899999999869989998168---8772789999999885279884676433-------10999999997-4-998
Q ss_pred HHHCC--CCC--------------HHHHHHHHHH-CCCCEEEC-CC---CCCCHHHHHHHCCCCCCCCC
Q ss_conf 31001--221--------------1358999973-59840320-13---22100124320334455222
Q gi|254780276|r 160 GVKDA--TGK--------------IELVSEQRLS-CGFDFIQL-SG---EDSSALGFNAHGGVGCISVT 207 (292)
Q Consensus 160 giK~~--~~~--------------~~~~~~~~~~-~~~~~~v~-~G---~~~~~~~~~~~G~~G~is~~ 207 (292)
+||-. .|+ +..+.+..+. ....+.++ .| ....+.-++..|++.++.|.
T Consensus 303 ~vkVGiGpGSiCTTR~v~GvGvPq~tAv~~~a~~a~~~gvpiIADGGIr~sGDi~KAlAaGAd~VMlGs 371 (499)
T PTZ00314 303 GIRIGMGSGSICTTQEVCAVGRPQATAVYKVARYAHSRGVPCIADGGIRSSGDIVKALALGASCVMLGS 371 (499)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 799753588551046434667860567999999864499859914784643189999872898786084
No 281
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=83.31 E-value=4 Score=21.49 Aligned_cols=122 Identities=20% Similarity=0.275 Sum_probs=70.4
Q ss_pred CEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCCCC---HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0011120177389888-68999999999999769989998672325---0108999999986543110123443003674
Q gi|254780276|r 3 RGSIPALITPFTKGNL-IDEDAFVEHIEWQITEGSGGLVPAGTTGE---SSTLSHEEHCRIIELCVKTVASRVPVMAGIG 78 (292)
Q Consensus 3 ~Gi~~~~~TPf~~d~~-iD~~~~~~~i~~l~~~gv~gi~~~G~tGE---~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~ 78 (292)
=||+...+-=|.+.|. .|.+...++++.+++.|++-|=++|-... -.-=..+|+.++.. +++....+..+...+-
T Consensus 4 MGIlNvTpDSFsdgg~~~~~~~a~~~a~~~i~~GAdiIDIG~eSTrPg~~~i~~~eE~~Rl~p-vl~~i~~~~~v~iSID 82 (258)
T cd00423 4 MGILNVTPDSFSDGGKFLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIP-VLRALAGEPDVPISVD 82 (258)
T ss_pred EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHH-HHHHHHCCCCCEEEEE
T ss_conf 999818899898887678999999999999987999999798778999974777888888500-5688742799609997
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 1027899997534321024432001234334317889999999875302330121001
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
+.+. +-++.|-+.|++.|-=+.- + ..+.+ ..+++...+.|+++-+.+
T Consensus 83 T~~~----~Va~~al~~G~~iINDVsg--~-~~d~~----m~~~va~~~~~~ilmH~~ 129 (258)
T cd00423 83 TFNA----EVAEAALKAGADIINDVSG--G-RGDPE----MAPLAAEYGAPVVLMHMD 129 (258)
T ss_pred CCCH----HHHHHHHHCCCCEEECCHH--H-HCCHH----HHHHHHHCCCCEEEEECC
T ss_conf 9888----9999999859986824003--1-06557----999999749988983057
No 282
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=83.18 E-value=4.1 Score=21.45 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=4.6
Q ss_pred CHHHHHHHHHHH
Q ss_conf 027899997534
Q gi|254780276|r 80 NNTRESVELAQY 91 (292)
Q Consensus 80 ~~~~~~i~~a~~ 91 (292)
.+.++++++++.
T Consensus 12 ~~~~~~~~l~~~ 23 (231)
T PRK00230 12 PSKEEALAFLDQ 23 (231)
T ss_pred CCHHHHHHHHHH
T ss_conf 999999999997
No 283
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=83.13 E-value=4.1 Score=21.44 Aligned_cols=12 Identities=17% Similarity=0.387 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCC
Q ss_conf 344300367410
Q gi|254780276|r 69 SRVPVMAGIGSN 80 (292)
Q Consensus 69 ~r~pii~gv~~~ 80 (292)
+++|+|--+|++
T Consensus 100 ~~vpLIGFaGaP 111 (306)
T cd00465 100 EEFPTAGAAGGP 111 (306)
T ss_pred CCCCEEEECCCH
T ss_conf 786237645865
No 284
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=83.07 E-value=1.5 Score=24.70 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=82.0
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 99999999769989998672325010899999998654311012344300367410278999975343210244320012
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
....+.+.+.|+.++.|+- --.++.=|.+.-..+ + +.+ ++||+.-=.=.+. .+...|..+|||+|+++.
T Consensus 34 ~~~A~~Y~~~GA~aiSVLT-e~~~F~Gs~~~L~~v-~---~~~--~~PiLrKDFIid~----~QI~ea~~~GAdaiLLI~ 102 (217)
T cd00331 34 VEIAKAYEKAGAAAISVLT-EPKYFQGSLEDLRAV-R---EAV--SLPVLRKDFIIDP----YQIYEARAAGADAVLLIV 102 (217)
T ss_pred HHHHHHHHHCCCCEEEEEC-CCCCCCCCHHHHHHH-H---HHC--CCCEEECCCCCCH----HHHHHHHHCCCCCHHHHH
T ss_conf 9999999977981899955-777779889999999-9---847--9986742321769----999999981998787988
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC-----CCCCHHHHHHHHHHCC
Q ss_conf 34334317889999999875302330121001111121110689997432030233100-----1221135899997359
Q gi|254780276|r 105 PYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD-----ATGKIELVSEQRLSCG 179 (292)
Q Consensus 105 P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~-----~~~~~~~~~~~~~~~~ 179 (292)
- -++++++.+ |.+.|...++..++== -+.+.+.+..+--+.++||-. -.-|..+..++....+
T Consensus 103 ~---~L~~~~l~~-l~~~a~~lgl~~LvEv--------h~~~El~~a~~~~a~iIGINnRdL~t~~vd~~~~~~L~~~ip 170 (217)
T cd00331 103 A---ALDDEQLKE-LYELARELGMEVLVEV--------HDEEELERALALGAKIIGINNRDLKTFEVDLNTTERLAPLIP 170 (217)
T ss_pred H---HCCHHHHHH-HHHHHHHHCCEEEEEE--------CCHHHHHHHHHCCCCEEEECCCCCHHCEECHHHHHHHHHHCC
T ss_conf 8---549999999-9999999498279885--------899999999957998784216771230347899999996489
Q ss_pred CCEEECC--CCC--CCHHHHHHHCCCCCCCCCC
Q ss_conf 8403201--322--1001243203344552222
Q gi|254780276|r 180 FDFIQLS--GED--SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 180 ~~~~v~~--G~~--~~~~~~~~~G~~G~is~~~ 208 (292)
.+..+++ |-. ..+......|++|++-|.+
T Consensus 171 ~~~~~IsESGI~~~~di~~l~~~G~d~~LIG~s 203 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAGADAVLIGES 203 (217)
T ss_pred CCCEEEECCCCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 898899827999999999999879999998978
No 285
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=82.96 E-value=1.3 Score=25.02 Aligned_cols=48 Identities=21% Similarity=0.202 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 8999975343210244320012-343343178899999998753023301210
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIYIYN 134 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn 134 (292)
-+..++++.+++.||+++.|.+ |.||..+. +|+.++.+++++||.-=+
T Consensus 70 ~dp~~~A~~Y~~~GA~aiSVLTe~~~F~Gs~----~~L~~vr~~~~lPiLrKD 118 (261)
T PRK00278 70 FDPVEIAKAYEEGGAACLSVLTDERFFQGSF----EYLRAARAAVSLPVLRKD 118 (261)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCCCCH----HHHHHHHHHCCCCEEEEH
T ss_conf 9999999999977996899951303248879----999999986699877201
No 286
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=82.82 E-value=4.2 Score=21.36 Aligned_cols=121 Identities=20% Similarity=0.261 Sum_probs=74.4
Q ss_pred CEEECCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCC---CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 0011120177389888-689999999999997699899986723---250108999999986543110123443003674
Q gi|254780276|r 3 RGSIPALITPFTKGNL-IDEDAFVEHIEWQITEGSGGLVPAGTT---GESSTLSHEEHCRIIELCVKTVASRVPVMAGIG 78 (292)
Q Consensus 3 ~Gi~~~~~TPf~~d~~-iD~~~~~~~i~~l~~~gv~gi~~~G~t---GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~ 78 (292)
=||+...+-=|-+.|. .+.+...+.++.+++.|++-|=++|-. |-. ..|.+|-.+=+.-+++....+..+...|-
T Consensus 18 MGIlNvTpDSFsdgg~~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~-~vs~eeE~~Rl~pvi~~i~~~~~v~iSID 96 (282)
T PRK11613 18 MGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAA-EVSVEEELDRVIPVVEAIAQRFEVWISVD 96 (282)
T ss_pred EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 99973899999999868899999999999998899699979825899898-68989999999999999997359729997
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 1027899997534321024432001234334317889999999875302330121001
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
.... +-++.|-+.|++.|-=+. ..++.+.+ +++...+.|+++-+.+
T Consensus 97 T~~~----~Va~~ale~Ga~iINDIs----g~~d~~~~----~~va~~~~~~vlmH~~ 142 (282)
T PRK11613 97 TSKP----EVIRESAKAGAHIINDIR----SLSEPGAL----EAAAETGLPVCLMHMQ 142 (282)
T ss_pred CCCH----HHHHHHHHCCCCEEECCC----CCCCHHHH----HHHHHCCCCEEEEECC
T ss_conf 9988----999999963978886632----12486599----9999729988998068
No 287
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein; InterPro: IPR008205 This family contains prokaryotic proteins that are related to pcrB. Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40 0dentity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB . The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown..
Probab=82.68 E-value=2.6 Score=22.86 Aligned_cols=173 Identities=21% Similarity=0.262 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 89999999999997699899986723250108999999986543110123443003674102789999753432102443
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~ 99 (292)
+-+.....++..+++|.||++++||.| .|.||-..+++.+.+.. .+|+|.=.|..+. -.-++|+
T Consensus 12 ~p~e~~eI~~a~~~~GTDail~GGs~g----Vt~~~~~~~~~~~~e~~--~~P~ilfPsn~~~----------~s~~~Da 75 (242)
T TIGR01768 12 TPEEADEIAKAAAESGTDAILVGGSQG----VTLDKLDQLIEALRERY--GVPIILFPSNLTN----------VSRKADA 75 (242)
T ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCC----CCHHHHHHHHHHHHHCC--CCCEEEECCCCCC----------HHHCCCE
T ss_conf 886368999999835898898227787----03688999999997405--9837984188742----------1110676
Q ss_pred CCEEC------CCCCCC-CHHHHHHH------HHHHHHHHC---CCCEEEECHHHC-C------CC-CC---HHHHHHHH
Q ss_conf 20012------343343-17889999------999875302---330121001111-1------21-11---06899974
Q gi|254780276|r 100 LLVVI------PYYNKP-NRRGLLAH------FGEIATTVS---SPIYIYNNPSRT-V------IE-MD---VDTMAELA 152 (292)
Q Consensus 100 i~v~~------P~~~~~-~~~~i~~~------~~~i~~~~~---~pi~iYn~P~~~-g------~~-~~---~~~l~~L~ 152 (292)
++++. |||.-- .-+.+.-| |+.+.+... ..=++=| |..+ + .. +. ...+.+|+
T Consensus 76 ~f~~svlNS~~~~wI~GkhaqWvr~q~~~~~~~~~~~~~~E~~~~gY~iv~-pgg~aa~v~~A~~~P~~k~~~Aa~~~~a 154 (242)
T TIGR01768 76 LFFPSVLNSDDPYWIIGKHAQWVRAQILAAPKFKKLGESLEIIPEGYIIVN-PGGAAATVTKAKPIPYDKEDLAAYAALA 154 (242)
T ss_pred EEEEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHEEHHEEEEEEC-CCCCEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 877114316997645342599999999878988765313400121127875-8995588502357887768799999999
Q ss_pred HHC--CHHHHHHCCCC--C---HHHHHHHHHHCCC-----CEEECCC--CCC--CHHHHHHHCCCCCCCCCCCCC
Q ss_conf 320--30233100122--1---1358999973598-----4032013--221--001243203344552222321
Q gi|254780276|r 153 ATY--PNIVGVKDATG--K---IELVSEQRLSCGF-----DFIQLSG--EDS--SALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 153 ~~~--pni~giK~~~~--~---~~~~~~~~~~~~~-----~~~v~~G--~~~--~~~~~~~~G~~G~is~~~n~~ 211 (292)
.+. =.|+++-.+++ + .+.+..+++.... +..++.| -+. ........|+|=.+ +||+.
T Consensus 155 ~~~~g~~~~YLEagsgap~pvpPE~va~vk~v~~~aGyGGe~~L~vGGGIRs~E~A~~~a~AgAD~~V--tGnvi 227 (242)
T TIGR01768 155 EEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKAGYGGEVKLIVGGGIRSVEKARKLAEAGADVVV--TGNVI 227 (242)
T ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEE--EEEEE
T ss_conf 99809968999637875479745899999987410478863257840764788999999534598999--84687
No 288
>pfam00218 IGPS Indole-3-glycerol phosphate synthase.
Probab=82.60 E-value=1.4 Score=24.81 Aligned_cols=44 Identities=27% Similarity=0.421 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 999975343210244320012-343343178899999998753023301
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSPIY 131 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~pi~ 131 (292)
+..++++.+++.||+++.|.+ |.||..+. +|+..+..++++|+.
T Consensus 69 dp~~iA~~Y~~~GA~aiSVLTd~~~F~Gs~----~~L~~vr~~v~lPiL 113 (254)
T pfam00218 69 DPAEIARAYEAAGASAISVLTEPKYFQGSL----EYLREVREAVSLPVL 113 (254)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCH----HHHHHHHHHCCCCEE
T ss_conf 999999999977983799842678679879----999999986488511
No 289
>cd07902 Adenylation_DNA_ligase_III The Adenylation domain of DNA Ligase III is a component of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. There are three classes of ATP-dependent DNA ligases in eukaryotic cells (I, III and IV). DNA ligase III is not found in lower eukaryotes and is present both in the nucleus and mitochondria. It has several isoforms; two splice forms, III-alpha and III-beta, differ in their carboxy-terminal sequences. DNA ligase III-beta is believed to play a role in homologous recombination during meiotic prophase. DNA ligase III-alpha interacts with X-ray Cross Complementing
Probab=82.55 E-value=2.4 Score=23.08 Aligned_cols=15 Identities=0% Similarity=0.080 Sum_probs=7.3
Q ss_pred CCEEEECHHHCCCCC
Q ss_conf 301210011111211
Q gi|254780276|r 129 PIYIYNNPSRTVIEM 143 (292)
Q Consensus 129 pi~iYn~P~~~g~~~ 143 (292)
-+++|+.-...|.++
T Consensus 124 ~~~vFDlL~l~g~~l 138 (213)
T cd07902 124 CLFVFDCLYFNGESL 138 (213)
T ss_pred EEEEEEEEEECCEEH
T ss_conf 699997700598183
No 290
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=82.48 E-value=4.3 Score=21.27 Aligned_cols=161 Identities=15% Similarity=0.096 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
..|.+.....++-+++.|++.+=+. |+..+-.+.++...+..+++ +++|+|.- -+.+.++.|.++|+
T Consensus 18 ~~~~~~a~~~~~al~~~Gi~~iEVT--------l~tp~a~~~I~~l~~~~~~~--~~iGAGTV---lt~e~~~~ai~aGA 84 (206)
T PRK09140 18 GITPDEALAHVGALIEAGFRAIEIP--------LNSPDPFDSIAALVKALGDD--ALIGAGTV---LSPEQVDRLADAGG 84 (206)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEE--------CCCCCHHHHHHHHHHHCCCC--EEEEEEEC---CCHHHHHHHHHCCC
T ss_conf 8999999999999998699889991--------79976999999999967986--59986204---67999999998599
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC---CCCCHHHHHHH
Q ss_conf 432001234334317889999999875302330121001111121110689997432030233100---12211358999
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD---ATGKIELVSEQ 174 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~---~~~~~~~~~~~ 174 (292)
+.+ +.|. .+.++.++.++ .++|.+ | |+ ++|..+.+-. +. ..-.+|- +..-...+..+
T Consensus 85 ~Fi--VSP~----~~~~vi~~a~~----~~i~~i----P---G~-~TPsEi~~A~-~~-Ga~~vKlFPA~~~Gp~~ikal 144 (206)
T PRK09140 85 RLI--VTPN----IDPEVIRRAVA----YGMTVM----P---GV-ATPTEAFAAL-RA-GADALKLFPASQLGPAGIKAL 144 (206)
T ss_pred CEE--ECCC----CCHHHHHHHHH----CCCCCC----C---CC-CCHHHHHHHH-HC-CCCEEEECCHHCCCHHHHHHH
T ss_conf 999--9999----98999999998----299652----7---85-9999999999-85-987156575110599999998
Q ss_pred HHHCCCCEEE--CCC-CCCCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 9735984032--013-2210012432033445522223211
Q gi|254780276|r 175 RLSCGFDFIQ--LSG-EDSSALGFNAHGGVGCISVTANVVP 212 (292)
Q Consensus 175 ~~~~~~~~~v--~~G-~~~~~~~~~~~G~~G~is~~~n~~P 212 (292)
+.-+++++.+ -.| +.+.+-+++..|+.++-- -+++++
T Consensus 145 ~~p~P~~~~~~ptGGV~~~N~~~~l~aGa~avG~-Gs~L~~ 184 (206)
T PRK09140 145 RAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGL-GSALYR 184 (206)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEE-CHHCCC
T ss_conf 6438999989953798888899999869919996-065159
No 291
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=82.43 E-value=4.4 Score=21.26 Aligned_cols=174 Identities=14% Similarity=0.185 Sum_probs=88.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 99999999769989998672325010899999998654311012344300367410278999975343210244320012
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
...++.+.+.|++-+.+.--.|-. .....-.++++..++.+ .+|+-+|=|=-+ ++.++.+-++|||-|.+-.
T Consensus 33 ~~~ak~f~~~GadelhivDld~a~--~g~~~n~~~I~~I~~~~--~ipi~vGGGIrs----~e~~~~ll~~GadkViigs 104 (253)
T PRK01033 33 INAVRIFNEKEADELIVLDIDASR--KGREPNYELIENLASEC--FMPLCYGGGIKT----VEQAKRIFSLGVEKVSIST 104 (253)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCC--CCCCCHHHHHHHHHHHC--CCCEEEECCCCC----HHHHHHHHHCCCCEEEECC
T ss_conf 999999998799989999474542--48801699999999876--998898688121----6888999867986699998
Q ss_pred CCCCCCCH-HHHHHHH--HHHHHHHCCCC------EEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------CC---CC
Q ss_conf 34334317-8899999--99875302330------12100111112111068999743203023310------01---22
Q gi|254780276|r 105 PYYNKPNR-RGLLAHF--GEIATTVSSPI------YIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------DA---TG 166 (292)
Q Consensus 105 P~~~~~~~-~~i~~~~--~~i~~~~~~pi------~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------~~---~~ 166 (292)
-.+..|.- +++.+-| +.|.-+.|.-- .+|..-......+++..+.+...+. .+-.+- |. ..
T Consensus 105 ~a~~~p~~i~~~~~~fG~q~IvvsiD~k~~~~~~~~v~~~g~~~~t~~~~~~~~~~~~~~-g~geil~TdI~rDGt~~G~ 183 (253)
T PRK01033 105 AALEDPKLITEAAEIYGSQSVVVSIDVKKRLFGRYDVYTHNGTKKTGLDPVEFAKQAEEL-GAGEIVLNSIDRDGVMKGY 183 (253)
T ss_pred HHHHCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHHC-CCCEEEEEEECCCCCCCCC
T ss_conf 786374165789987799769999998248778347898679536785589999998746-9779999878488976687
Q ss_pred CHHHHHHHHHHCCCCEEECCCCCC--CHHHHH-HHCCCCCCCCC
Q ss_conf 113589999735984032013221--001243-20334455222
Q gi|254780276|r 167 KIELVSEQRLSCGFDFIQLSGEDS--SALGFN-AHGGVGCISVT 207 (292)
Q Consensus 167 ~~~~~~~~~~~~~~~~~v~~G~~~--~~~~~~-~~G~~G~is~~ 207 (292)
|.+.+.++.+..+-++....|... .+...+ ..|++|.+.|.
T Consensus 184 d~~l~~~i~~~~~ipiIasGGi~s~~di~~l~~~~~v~gv~~gs 227 (253)
T PRK01033 184 DLELIKKISSAVKIPVTALGGAGSLDDIADLIQEAGASAAAAGS 227 (253)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999987899999978989999999999867973997831
No 292
>PRK08227 aldolase; Validated
Probab=82.36 E-value=4.4 Score=21.24 Aligned_cols=140 Identities=11% Similarity=0.082 Sum_probs=78.6
Q ss_pred HHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCCCC--CHH---HHHHHHHHCC-HHH
Q ss_conf 53432102443200123433431788999999987530---23301210011111211--106---8999743203-023
Q gi|254780276|r 89 AQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVIEM--DVD---TMAELAATYP-NIV 159 (292)
Q Consensus 89 a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~~~--~~~---~l~~L~~~~p-ni~ 159 (292)
.+.|-.+|||+|.+.-- .-...+.+.++-+.+|++++ ++|++.--.| +.++ +++ ...|++.|+. .|+
T Consensus 127 VeeAvrlGAdAVsv~v~-iGs~~E~~~l~~lg~v~~e~~~~GmPlla~~~~---g~~~~~d~~~va~aaRia~ELGADiV 202 (291)
T PRK08227 127 MEDAVRLNVCAVAAQVF-IGSEYETQSIKNIIQLVDAGLRYGMPTMAVTAV---GKDMVRDARYFSLATRIAAEMGAQII 202 (291)
T ss_pred HHHHHHCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECC---CCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 99998679978999863-599328999999999999999829987998346---87777778999999999999789988
Q ss_pred HHHCCCCCHHHHHHHHHHCCCCEEECCCCC---CCH----HHHHHHCCCCCCCCCCCCC----CCHH-HHHHHHHCCC-C
Q ss_conf 310012211358999973598403201322---100----1243203344552222321----1002-4444431178-8
Q gi|254780276|r 160 GVKDATGKIELVSEQRLSCGFDFIQLSGED---SSA----LGFNAHGGVGCISVTANVV----PRIC-AEFQQAMIRG-D 226 (292)
Q Consensus 160 giK~~~~~~~~~~~~~~~~~~~~~v~~G~~---~~~----~~~~~~G~~G~is~~~n~~----P~~~-~~l~~~~~~g-d 226 (292)
=.+++ + +.+.++...++-.+.+-.|.- ..+ ...+..|+.|..-| =|+| |..+ ..+...+++| .
T Consensus 203 Kt~yt-~--e~f~~Vv~a~pvPVliaGG~k~~d~e~L~~v~~a~~aGa~Gv~~G-RNVfQ~~~P~~~~~Al~~iVHe~~s 278 (291)
T PRK08227 203 KTYYV-E--KGFERITAGCPVPIVIAGGKKLPERDALEMCYQAIDQGASGVDMG-RNIFQSDAPVAMIKAVHAVVHHNET 278 (291)
T ss_pred ECCCC-H--HHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEC-CHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 50697-3--459999964899789967998986999999999997699368724-0023589989999999998659999
Q ss_pred CHHHHHHHHH
Q ss_conf 2799999999
Q gi|254780276|r 227 YRQALLYQDK 236 (292)
Q Consensus 227 ~~~A~~l~~~ 236 (292)
.++|.+++..
T Consensus 279 ~~eA~e~~~~ 288 (291)
T PRK08227 279 AKEAYELYLS 288 (291)
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 293
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=82.33 E-value=4.4 Score=21.23 Aligned_cols=103 Identities=12% Similarity=0.130 Sum_probs=57.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 68999999999999769989998672325010899999998654-----3110123443003674102789999753432
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYAH 93 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~ 93 (292)
-|.+..++.++.+++.+|+|+.+.++.. +.++.....+. +++... -+-+..|...+.+-+...+++..
T Consensus 40 ~~~~~~~~~i~~l~~~~vdGiI~~~~~~-----~~~~~~~~~~~~iPvV~i~~~~--~~~~~~V~~Dn~~~~~~a~~~L~ 112 (264)
T cd01574 40 ADEEALRAAVRRLLAQRVDGVIVNAPLD-----DADAALAAAPADVPVVFVDGSP--SPRVSTVSVDQEGGARLATEHLL 112 (264)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHCCCCEEEECCCC--CCCCCEEEECHHHHHHHHHHHHH
T ss_conf 9899999999999964999999916889-----9699999985899689986679--99998899788999999999999
Q ss_pred HCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 10244320012-3433431788999999987530233
Q gi|254780276|r 94 SIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 94 ~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
+.|..-+..+. |.-.. +..+-.+=|++.+...+++
T Consensus 113 ~~G~~~i~~i~~~~~~~-~~~~R~~G~~~al~~~~i~ 148 (264)
T cd01574 113 ELGHRTIAHVAGPEEWL-SARARLAGWRAALEAAGIA 148 (264)
T ss_pred HCCCCCEEECCCCCCCH-HHHHHHHHHHHHHHHCCCC
T ss_conf 84998273258997775-7999999999999986989
No 294
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=82.22 E-value=4.4 Score=21.20 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=9.5
Q ss_pred HHHHHHHHCCCCCCCEEC
Q ss_conf 975343210244320012
Q gi|254780276|r 87 ELAQYAHSIGADALLVVI 104 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~~ 104 (292)
.+.+.+.++|.|-+-+.-
T Consensus 101 ~fv~~~~~~GidifRiFD 118 (580)
T PRK09282 101 KFVEKAAENGIDVFRIFD 118 (580)
T ss_pred HHHHHHHHCCCCEEEEEE
T ss_conf 999999976997899740
No 295
>PRK05567 inositol-5'-monophosphate dehydrogenase; Reviewed
Probab=82.19 E-value=4.3 Score=21.32 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 3674102789999753432102443200123433431788999999987530-233012100111112111068999743
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
+|..-....+.+++++..-++|+|.+.+-.- ..+.+.+.+-.+.|-+.. ++||+.=| .-+.+..+.|.+
T Consensus 219 VgAAVg~~~~~~eRa~~Lv~AGvDvivIDtA---hGhs~~vi~~ik~ik~~~~~v~viaGN-------v~T~~~a~~L~~ 288 (486)
T PRK05567 219 VGAAVGVGADNEERAEALVKAGVDVLVVDTA---HGHSEGVLDRVREIKAKYPDVQIIAGN-------VATAEAARALIE 288 (486)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHCCCCCCEEEEE-------ECHHHHHHHHHH
T ss_conf 9999626801899999999769988995044---521577899999997407877368751-------201999999997
Q ss_pred HCCHHHHHH
Q ss_conf 203023310
Q gi|254780276|r 154 TYPNIVGVK 162 (292)
Q Consensus 154 ~~pni~giK 162 (292)
. ..-++|
T Consensus 289 -a-GaD~vk 295 (486)
T PRK05567 289 -A-GADAVK 295 (486)
T ss_pred -C-CCCEEE
T ss_conf -2-987699
No 296
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=82.08 E-value=4.5 Score=21.17 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
Q ss_conf 8868999999999999769989998672325
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGE 47 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE 47 (292)
.+-|.+...+.++.++..|++||.+.....+
T Consensus 37 ~~~d~~~q~~~i~~li~~~vDgIii~p~~~~ 67 (273)
T cd06309 37 AQQKQENQISAIRSFIAQGVDVIILAPVVET 67 (273)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 9999999999999999759999998057654
No 297
>PRK13136 consensus
Probab=82.01 E-value=4.5 Score=21.15 Aligned_cols=183 Identities=13% Similarity=0.086 Sum_probs=99.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHH------------CCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----2501------------08999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESS------------TLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~------------~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.+.|+|-|=++=-. .++. -.+.+.-.++++.+.+. ..+|++.
T Consensus 16 ~yitaG~P~~e~s~~~~~~l~~~G~DiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~v~~~r~~--~~~pivl 93 (253)
T PRK13136 16 AYLTAGDGGLERSLESLLALAKGGVNILEVGVPFSDPVADGPVIQEASIRALAQGTTLHDVLTLITSFRQH--SEIPIIL 93 (253)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC--CCCCEEE
T ss_conf 88648489989999999999965999899789988866657999999999998699799999999982257--8988899
Q ss_pred CCCCCHHHHH-HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027899-99753432102443200123433431788999999987530233-012100111112111068999743
Q gi|254780276|r 76 GIGSNNTRES-VELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP-IYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~~~~-i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~p-i~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+..-.- -++.+.++++|+||+++.= +..++-.+| ...+...++. |.+. .|. -+.+-+.++++
T Consensus 94 M~Y~N~i~~~G~~f~~~~~~~GvdGlIipD-----LP~eE~~~~-~~~~~~~~i~~I~li-aPt-----t~~eRi~~i~~ 161 (253)
T PRK13136 94 FTYFNPLLAAGDKIYQQMKSAGVDGCLVVD-----LPVEEAAPH-LTACKTAKIAPILLI-SPS-----TTQERLKKINE 161 (253)
T ss_pred ECCCHHHHHHHHHHHHHHHHCCCCCEECCC-----CCHHHHHHH-HHHHHHCCCCCEEEE-CCC-----CCHHHHHHHHH
T ss_conf 865179999799999999974987200678-----997776999-999997588712552-689-----98899999996
Q ss_pred HCCHHH---------HHHCCCC-CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 203023---------3100122-11-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIV---------GVKDATG-KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~---------giK~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
.-..++ |.|.... +. ..+.++++...-.+.+--| .+..-...+...++|++.|++
T Consensus 162 ~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~ADGvIVGSa 228 (253)
T PRK13136 162 HGEGMLYYVCRPGTTGVRATLPENFPAKMNQIKSMTSLPIVTGFGIANRKMAAQALQYADGFVIGSL 228 (253)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCEEEECHH
T ss_conf 0898199985552368764463889999999997269986997154999999999822999998589
No 298
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein; InterPro: IPR005992 This family of proteins, often annotated as a putative IMP dehydrogenase, are related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria..
Probab=81.69 E-value=2.1 Score=23.55 Aligned_cols=72 Identities=24% Similarity=0.224 Sum_probs=40.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCC--CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999999997699899986723--25010899999998654311012344300367410278999975343210244320
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTT--GESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALL 101 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~t--GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~ 101 (292)
.+++..-++++|+|=|++-||+ .|--+=...|=..+.+++-+- .+|||+|=. .+=+-++++ ...||-||+
T Consensus 145 ~~~~a~~vv~AG~DLLvIqgT~vSaehv~~e~~E~LnLk~fi~eL---DvPVv~Ggv-~~Y~~ALhL----MRtGAagvl 216 (376)
T TIGR01304 145 ASKLAPVVVEAGADLLVIQGTVVSAEHVSSESGEPLNLKKFIQEL---DVPVVAGGV-VTYTTALHL----MRTGAAGVL 216 (376)
T ss_pred HHHHHHHHHHHCCCEEEEHHHHHHHEEECCCCCCCHHHHHHHHHC---CCCEEECCC-CCHHHHHHH----HHHCCEEEE
T ss_conf 678889999717300420012320100468888721488897548---988788385-308899998----630113788
Q ss_pred EE
Q ss_conf 01
Q gi|254780276|r 102 VV 103 (292)
Q Consensus 102 v~ 103 (292)
|.
T Consensus 217 VG 218 (376)
T TIGR01304 217 VG 218 (376)
T ss_pred EC
T ss_conf 64
No 299
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=81.66 E-value=4.6 Score=21.07 Aligned_cols=81 Identities=10% Similarity=0.118 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98886899999999999976998999867232501089999999865431101234430036741027899997534321
Q gi|254780276|r 15 KGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 15 ~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~ 94 (292)
..++++.+...+.|+-+.+.|+.-|.+.| ||-.. .....++++.+.+. .+ .+.+..+.|.-+-+.++..++
T Consensus 43 ~~~ELs~~e~~~~id~l~~~Gv~~v~~tG--GEPll--r~D~~ei~~~a~~~---G~--~~~l~TNG~lit~~~a~~L~~ 113 (375)
T PRK05301 43 HGAELSTAEWIRVLREARALGVLQLHFSG--GEPLL--RKDLEELVAHARRL---GL--YTNLITSGVGLTEARLAALKA 113 (375)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECC--CCCCC--CCCHHHHHHHHHHC---CC--EEEEEECCCCCCHHHHHHHHH
T ss_conf 65789999999999999986998899618--65245--66899999999976---97--589960674557999999985
Q ss_pred CCCCCCCEEC
Q ss_conf 0244320012
Q gi|254780276|r 95 IGADALLVVI 104 (292)
Q Consensus 95 ~Gad~i~v~~ 104 (292)
.|.+.|.|.-
T Consensus 114 ~gl~~v~vSl 123 (375)
T PRK05301 114 AGLDHIQLSF 123 (375)
T ss_pred HCCCEEEEEC
T ss_conf 0998899956
No 300
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D; InterPro: IPR011878 This peptide is found only in the Archaea. It is part of a heterodimer, with GatD (IPR004414 from INTERPRO), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn) .; GO: 0006450 regulation of translational fidelity.
Probab=81.29 E-value=1.6 Score=24.33 Aligned_cols=212 Identities=15% Similarity=0.157 Sum_probs=109.0
Q ss_pred CHHHHHHHHHHHHH-CCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC-CCCCCCCCC-CCHHHHHHHHHHHHHH-C
Q ss_conf 89999999999997-699899986723250108999999986543110123-443003674-1027899997534321-0
Q gi|254780276|r 20 DEDAFVEHIEWQIT-EGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS-RVPVMAGIG-SNNTRESVELAQYAHS-I 95 (292)
Q Consensus 20 D~~~~~~~i~~l~~-~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~-r~pii~gv~-~~~~~~~i~~a~~a~~-~ 95 (292)
+-+.|-+-+.=|.+ +.|++=.++---+| +|.++-|.++.+.++++... .-=||+.-| ++=--.+-.|+=-.+. +
T Consensus 93 tAeel~~~~PEL~~iAni~a~~~~niLSE--NMkP~~W~~IA~~V~~al~~G~~GVVvaHGTDTM~YTAaALSFm~~~Gl 170 (413)
T TIGR02153 93 TAEELARAVPELLEIANIKARAVFNILSE--NMKPEYWIKIAEAVAKALEEGADGVVVAHGTDTMAYTAAALSFMFKTGL 170 (413)
T ss_pred CHHHHHHHCCCHHEECCCCEEEEEHHCCC--CCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 98999861740020124310560001077--8885899999999999840899538994158746899999999997169
Q ss_pred CCCCCCEECC-CCCCCCHHHHHHHHHHHHHHHCCC-----CEEEECHHHCC---------C---CCC---HHHHHHHHHH
Q ss_conf 2443200123-433431788999999987530233-----01210011111---------2---111---0689997432
Q gi|254780276|r 96 GADALLVVIP-YYNKPNRRGLLAHFGEIATTVSSP-----IYIYNNPSRTV---------I---EMD---VDTMAELAAT 154 (292)
Q Consensus 96 Gad~i~v~~P-~~~~~~~~~i~~~~~~i~~~~~~p-----i~iYn~P~~~g---------~---~~~---~~~l~~L~~~ 154 (292)
..--|+|.+- +-=+||-|...+-.-.|.-|+.-| |++|= .|+ + .|. =|.++-+ +.
T Consensus 171 ~~PvVlVGAQRSSDRPSSDAa~NL~~A~~~A~~a~~aEV~VvMHG---~tsD~yc~~HRGVkVRKMHTSRRDAF~Si-N~ 246 (413)
T TIGR02153 171 PVPVVLVGAQRSSDRPSSDAALNLIAAVRAATSAPIAEVVVVMHG---ETSDTYCLVHRGVKVRKMHTSRRDAFQSI-NS 246 (413)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEC---CCCCCEEEEECCCEEECCCCCCHHHHHCC-CC
T ss_conf 998899857435888731379999999998336971003888401---24886799965823503658810255315-88
Q ss_pred CCHHHHHHCC---CCCH-----------HHHHHHHHHCCCC---EEECCCCCCCHHHHH-HHCCCCCC---CCCCCCCCC
Q ss_conf 0302331001---2211-----------3589999735984---032013221001243-20334455---222232110
Q gi|254780276|r 155 YPNIVGVKDA---TGKI-----------ELVSEQRLSCGFD---FIQLSGEDSSALGFN-AHGGVGCI---SVTANVVPR 213 (292)
Q Consensus 155 ~pni~giK~~---~~~~-----------~~~~~~~~~~~~~---~~v~~G~~~~~~~~~-~~G~~G~i---s~~~n~~P~ 213 (292)
+| |.=|-.- .+.. +.-.++...+..+ +.++.|.++-+++++ ..|.+|.+ +|+|++--+
T Consensus 247 ~P-iA~~~~~~~~~~~~~~L~~dYr~r~~~~le~~~~~EekVaLvKfyPG~~p~il~~~~d~GykGiViEGTGLGHvs~~ 325 (413)
T TIGR02153 247 IP-IAKVDPKSLKEKEIEKLREDYRRRGEKELELDDKFEEKVALVKFYPGLDPEILEFLVDKGYKGIVIEGTGLGHVSED 325 (413)
T ss_pred CC-CEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHCCCCEEEEEECCCCCCCHHH
T ss_conf 65-35881777874407775421131377653206887713799984389888899998518715999833787555235
Q ss_pred HHHHHHHHHCCCCCH--HHHHHHHHHH
Q ss_conf 024444431178827--9999999999
Q gi|254780276|r 214 ICAEFQQAMIRGDYR--QALLYQDKLM 238 (292)
Q Consensus 214 ~~~~l~~~~~~gd~~--~A~~l~~~l~ 238 (292)
++--+-++..+|-.- +.+-|+.+++
T Consensus 326 ~ip~i~ra~d~Gv~V~MTSQClyGRVN 352 (413)
T TIGR02153 326 WIPSIKRATDDGVPVVMTSQCLYGRVN 352 (413)
T ss_pred HHHHHHHHHHCCCEEEEEEEEECCEEC
T ss_conf 899999987589689996114335050
No 301
>pfam01487 DHquinase_I Type I 3-dehydroquinase. Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyses the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyses the trans-dehydration of 3-dehydroshikimate see pfam01220.
Probab=81.28 E-value=4.8 Score=20.97 Aligned_cols=75 Identities=13% Similarity=0.176 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCC--CCCCHHHHHHHH
Q ss_conf 7410278999975343210244320012343343178899999998753023301210011111--211106899974
Q gi|254780276|r 77 IGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTV--IEMDVDTMAELA 152 (292)
Q Consensus 77 v~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g--~~~~~~~l~~L~ 152 (292)
+.+.+..+.+..++.+.+ |+|.|-+-.=++...+.+.+.+-.+.+.+.+++|+++-.=+..-| ...+.+...++.
T Consensus 4 i~~~~~~~~~~~~~~~~~-~aD~vE~R~D~l~~~~~~~i~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll 80 (222)
T pfam01487 4 VTGPSLEEALAELEELKE-GADAVELRVDLLENVDAEDVSEQLSALRESTGLPIIFTVRTKSEGGRFEGSEEEYLELL 80 (222)
T ss_pred CCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHH
T ss_conf 057999999999998610-89989998603568787899999999998389977999687788899889999999999
No 302
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=80.94 E-value=4.9 Score=20.89 Aligned_cols=25 Identities=20% Similarity=0.094 Sum_probs=14.5
Q ss_pred HHHHHHHCCC--------CCCCCCCCCCCCHHH
Q ss_conf 0124320334--------455222232110024
Q gi|254780276|r 192 ALGFNAHGGV--------GCISVTANVVPRICA 216 (292)
Q Consensus 192 ~~~~~~~G~~--------G~is~~~n~~P~~~~ 216 (292)
+...+.+|+. |...|+..++.+.++
T Consensus 180 ~aaa~aLgA~~a~~g~~~GVqmGTrfl~t~E~v 212 (320)
T cd04743 180 AAMVSALAAPLAERGAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred HHHHHHHCCCHHHCCCCCEEEEECHHHCCHHHH
T ss_conf 999998388422315622278604411015542
No 303
>PRK13112 consensus
Probab=80.79 E-value=4.9 Score=20.86 Aligned_cols=185 Identities=14% Similarity=0.028 Sum_probs=103.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC----CCHHC------------CCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 7389888689999999999997699899986723----25010------------8999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT----GESST------------LSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t----GE~~~------------Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|.-|++...+.++-+.+.|+|-+=++=-. .++.. +|.+.-.++++...+. ...+|++.
T Consensus 22 ~yitaG~P~~~~s~~~l~~l~~~GaDiiElGiPFSDPvADGPvIQ~A~~rAL~~G~~~~~~~~~~~~ir~~-~~~~Pivl 100 (279)
T PRK13112 22 TYFMGGDPDLETSLKIMKALPKAGADIIELGMPFSDPMADGPAIQAAGLRALKAGQTLAKTLYLAREFRKD-DDTTPIVL 100 (279)
T ss_pred EEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCCEEE
T ss_conf 88607389978999999999877999899789989866657999999999997699688999999985134-89988799
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.--+.. ...-++++.|+++|+||+++.= +..++--+| ...++.-++..+..=.|. -+.+-+.++++
T Consensus 101 M~Y~N~i~~~G~e~F~~~~~~aGvdGvIipD-----LP~eE~~~~-~~~~~~~~i~~I~lvaPt-----t~~eRi~~i~~ 169 (279)
T PRK13112 101 MGYYNPIYIYGVERFLTDAKAAGVDGLIVVD-----LPPEMDAEL-CIPAMKAGINFIRLATPT-----TDDKRLPKVLA 169 (279)
T ss_pred EEECHHHHHHCHHHHHHHHHHCCCCEEEECC-----CCHHHHHHH-HHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 8512499884799999999973998798469-----997888999-999985783469982589-----98999999985
Q ss_pred HCCHHHHH---------HCCCC-CH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 20302331---------00122-11-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIVGV---------KDATG-KI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~gi---------K~~~~-~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
....+++. +.... +. ..+.++++..+-.+.+--| ....-...+..+++|.+.|++
T Consensus 170 ~s~GFiY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~aDGvIVGSA 236 (279)
T PRK13112 170 NTSGFVYYVSMTGITGSALADTSAVGEAVARIKRHTDLPVCVGFGVKTPEQARAIAAHADGVVVGTA 236 (279)
T ss_pred CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCEEEECHH
T ss_conf 2788089983566667664564889999999997178987678356999999999725999998779
No 304
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=80.60 E-value=5 Score=20.81 Aligned_cols=104 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred HHHHHHCCCCEEEECCCCCCH-----HCCCHHHHHHHHHHHHHCCCCC-CCCCCCC------CCCHHHHHHHHHHHHHHC
Q ss_conf 999997699899986723250-----1089999999865431101234-4300367------410278999975343210
Q gi|254780276|r 28 IEWQITEGSGGLVPAGTTGES-----STLSHEEHCRIIELCVKTVASR-VPVMAGI------GSNNTRESVELAQYAHSI 95 (292)
Q Consensus 28 i~~l~~~gv~gi~~~G~tGE~-----~~Ls~~Er~~~~~~~~~~~~~r-~pii~gv------~~~~~~~~i~~a~~a~~~ 95 (292)
++.++++|++.+-+..+|++. ..+|.+|-.+.+...++.+... ..|.+++ +..+.+-.++.++.+.+.
T Consensus 91 i~al~~a~~~~v~i~~~tS~~h~~~~l~~t~~e~l~~i~~~v~~a~~~g~~V~~~~E~f~Da~R~d~efl~ev~~aa~~a 170 (530)
T PRK12344 91 LAALLAAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKAHGREVIYDAEHFFDGYKANPEYALATLKAAAEA 170 (530)
T ss_pred HHHHHHCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 89998389998999955459999887259999999999999999997198799413213664337999999999999852
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEE
Q ss_conf 24432001234334317889999999875302-33012
Q gi|254780276|r 96 GADALLVVIPYYNKPNRRGLLAHFGEIATTVS-SPIYI 132 (292)
Q Consensus 96 Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~-~pi~i 132 (292)
|++.+.+.-.. -...+.++.+.++.+.+..+ .+|-+
T Consensus 171 Ga~~i~l~DTv-G~~~P~~v~~~i~~l~~~~~~~~isv 207 (530)
T PRK12344 171 GADWVVLCDTN-GGTLPHEVAAIVAEVRARLPGAPLGI 207 (530)
T ss_pred CCCEEEECCCC-CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 99600237886-55588999999999997489982799
No 305
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=80.36 E-value=5.1 Score=20.76 Aligned_cols=191 Identities=11% Similarity=0.043 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 89999999999997699899986723250108999999986543110123443003674--1027899997534321024
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG--SNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~--~~~~~~~i~~a~~a~~~Ga 97 (292)
..+.+...++.+...+++.+.+.=..|-.. ...-..+.....+.. .++++++.+ +.+-.+.......+.++|+
T Consensus 13 ~~~~l~~~~~~l~~~~pd~isVT~gaggs~---~~~t~~~a~~i~~~~--gi~~i~Hltcr~~n~~~l~~~L~~~~~~Gi 87 (274)
T cd00537 13 GEENLEAAADLLGALDPDFVSVTDGAGGST---RDMTLLAAARILQEG--GIEPIPHLTCRDRNRIELQSILLGAHALGI 87 (274)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCC---HHHHHHHHHHHHHHH--CCCEEEEEECCCCCHHHHHHHHHHHHHCCC
T ss_conf 899999999997318999899388989856---240999999999973--998226860178999999999999998598
Q ss_pred CCCCEE---CCCC---CC------CCHHHHHHHHHHHHHH-HCCCCEEEECHHHCCCCC-C-HHHHHHHHHHCCHHHHHH
Q ss_conf 432001---2343---34------3178899999998753-023301210011111211-1-068999743203023310
Q gi|254780276|r 98 DALLVV---IPYY---NK------PNRRGLLAHFGEIATT-VSSPIYIYNNPSRTVIEM-D-VDTMAELAATYPNIVGVK 162 (292)
Q Consensus 98 d~i~v~---~P~~---~~------~~~~~i~~~~~~i~~~-~~~pi~iYn~P~~~g~~~-~-~~~l~~L~~~~pni~giK 162 (292)
+-++++ +|.. +. .+-.+++++-+..-.. ..+.+-.| |.. +..- + ...+.+|.++++. |..
T Consensus 88 ~niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~igva~y--Pe~-hp~~~~~~~di~~L~~K~~a--GA~ 162 (274)
T cd00537 88 RNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFSIGVAAY--PEG-HPEAPSLEEDIKRLKRKVDA--GAD 162 (274)
T ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCCCC--CCC-CCCCCHHHHHHHHHHHHHHH--HHH
T ss_conf 6388735888877888888887746799999999997589850056668--776-87741688999999999981--426
Q ss_pred ----CCCCCHHHHHHH---HHHCCCCEEECCCCCCCH-HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf ----012211358999---973598403201322100-12432033445522223211002444443117
Q gi|254780276|r 163 ----DATGKIELVSEQ---RLSCGFDFIQLSGEDSSA-LGFNAHGGVGCISVTANVVPRICAEFQQAMIR 224 (292)
Q Consensus 163 ----~~~~~~~~~~~~---~~~~~~~~~v~~G~~~~~-~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~ 224 (292)
.-..|.+.+.+. .+..+-++-++.|--... +..+.. ..- .+ +--.|+.+.+-.+.+..
T Consensus 163 f~iTQ~~Fd~~~~~~f~~~~~~~Gi~vPIi~GImpi~s~~~~~~-~~~-~~--Gv~iP~~l~~~l~~~~~ 228 (274)
T cd00537 163 FIITQLFFDNDAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKR-FAK-LC--GVEIPDWLLERLEKLKD 228 (274)
T ss_pred HHHHHHEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHH-HHH-HC--CCCCCHHHHHHHHHHCC
T ss_conf 67864433399999999999974999865632110067899999-998-71--99882999999986349
No 306
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=80.04 E-value=5.2 Score=20.69 Aligned_cols=180 Identities=12% Similarity=0.054 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
+-|.+.+++..++. -++|+.-+-|-=.-.-.+.. ++++...+..++.-++-+.|.+.+.++.++.++...+.+-
T Consensus 7 tAd~~eIk~~~~~~---~i~GvTTNPsll~k~g~~~~---~~~~~i~~~~~~~~~l~~qv~~~~~e~M~~~a~~l~~~~~ 80 (220)
T PRK12653 7 TSDVVAVKALSRIF---PLAGVTTNPSIIAAGKKPLE---VVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIA 80 (220)
T ss_pred CCCHHHHHHHHCCC---CCCEECCCHHHHHHCCCCHH---HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 18999999997069---93758588999985598989---9999999980899858999875889999999999987357
Q ss_pred CCCCEECCCCCCCCHHHHHHHHHHHHHH-HCCC-CEEEECHHH-----CCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHH
Q ss_conf 4320012343343178899999998753-0233-012100111-----11211106899974320302331001221135
Q gi|254780276|r 98 DALLVVIPYYNKPNRRGLLAHFGEIATT-VSSP-IYIYNNPSR-----TVIEMDVDTMAELAATYPNIVGVKDATGKIEL 170 (292)
Q Consensus 98 d~i~v~~P~~~~~~~~~i~~~~~~i~~~-~~~p-i~iYn~P~~-----~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~ 170 (292)
+ +.|=-| .+.+++. =.+.+.+. ..+. ..+|+..+. .|.++-.-.+-|+. +.. . ++...+..
T Consensus 81 n-vvVKIP----~t~~Gl~-ai~~L~~~Gi~vn~Tavys~~Qa~~Aa~aGA~yvsPyvgR~~-d~g-~----Dg~~~i~~ 148 (220)
T PRK12653 81 D-IVVKVP----VTAEGLA-AIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRID-AQG-G----SGIQTVTD 148 (220)
T ss_pred C-EEEEEC----CCHHHHH-HHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEEEEEEEHH-HCC-C----CHHHHHHH
T ss_conf 8-089948----8578999-999998829877852106799999999859988844425064-338-9----82668999
Q ss_pred HHHHHHHCCCCEEECCCC---CCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 899997359840320132---21001243203344552222321100244444
Q gi|254780276|r 171 VSEQRLSCGFDFIQLSGE---DSSALGFNAHGGVGCISVTANVVPRICAEFQQ 220 (292)
Q Consensus 171 ~~~~~~~~~~~~~v~~G~---~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~ 220 (292)
+.++.+..+.+-.++.++ -.++......|++.+. +-|+.+.++++
T Consensus 149 i~~~~~~~~~~tkILaASiR~~~~v~~a~~~Gad~iT-----ip~~v~~~l~~ 196 (220)
T PRK12653 149 LHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESIT-----LPLDVAQQMIS 196 (220)
T ss_pred HHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCEEE-----CCHHHHHHHHC
T ss_conf 9999997699988999838999999999986999998-----39999999977
No 307
>PRK05211 consensus
Probab=79.79 E-value=5.3 Score=20.63 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=48.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 99999999769989998672325010899999998654311012344300367410278999975343210244320012
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
...++.+.+.|++-|.+.--.|-...-. --.++++..++.+ .+|+-+|=|=-+. +.++..-++|||-|.+-.
T Consensus 24 ~~~ak~~~~~gadelhivDld~a~~g~~--~n~~~I~~i~~~~--~~Pl~vGGGIrs~----~~i~~ll~~GadkViigs 95 (248)
T PRK05211 24 VPLAKRYAEEGADELVFYDITASSDGRV--VDKSWVSRVAEVI--DIPFCVAGGIKSV----EDAREILSFGADKISINS 95 (248)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCC--CHHHHHHHHHHHC--CCCEEEECCCCCH----HHHHHHHHCCCCEEEECC
T ss_conf 9999999986999899997867767872--1499999999767--9858962780138----999999987998899897
Q ss_pred CCCCCC
Q ss_conf 343343
Q gi|254780276|r 105 PYYNKP 110 (292)
Q Consensus 105 P~~~~~ 110 (292)
..+..|
T Consensus 96 ~a~~np 101 (248)
T PRK05211 96 PALADP 101 (248)
T ss_pred HHHHCC
T ss_conf 676196
No 308
>PRK13139 consensus
Probab=79.70 E-value=5.3 Score=20.61 Aligned_cols=184 Identities=10% Similarity=0.020 Sum_probs=102.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCC----CH------------HCCCHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 73898886899999999999976998999867232----50------------108999999986543110123443003
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTG----ES------------STLSHEEHCRIIELCVKTVASRVPVMA 75 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tG----E~------------~~Ls~~Er~~~~~~~~~~~~~r~pii~ 75 (292)
||---|--|.+...+.++-+.+.|+|-+=++=-.+ ++ .-.+.++-.++++...+.. ++|++.
T Consensus 20 ~yitaG~P~~e~s~~~~~~l~~~GaDiiElGiPFSDP~ADGpvIq~A~~~AL~~G~~~~~~~~~~~~~~~~~--~~pivl 97 (254)
T PRK13139 20 THIVLGYPSLQANREVIRAMVAGGVDLMELQIPFSEPMADGPVILKANQAALAGGFKVRECFDFAREVVAAF--NIPFLF 97 (254)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCCEEE
T ss_conf 785584899799999999999669999997898888666589999999999976997999999999997248--976899
Q ss_pred CCCCCHH--HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 6741027--89999753432102443200123433431788999999987530233012100111112111068999743
Q gi|254780276|r 76 GIGSNNT--RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 76 gv~~~~~--~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
=.-.+.. ...-++++.|+++|+||+++.= +..++- +-|...+++.++..+..=.|. -+.+-+.++++
T Consensus 98 M~Y~N~i~~~G~e~F~~~~~~~Gv~GvIipD-----LP~eE~-~~~~~~~~~~gl~~I~lvaPt-----t~~~Ri~~i~~ 166 (254)
T PRK13139 98 MTYYNILFKYGVERFIDEVADIGVKGLIVPD-----LPPEQA-QDYIAQCRAKGMAPIGIYAPT-----STDERMGKIAA 166 (254)
T ss_pred EEEHHHHHHCCHHHHHHHHHHCCCCEEECCC-----CCHHHH-HHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHH
T ss_conf 9525999870999999999975998586479-----997889-999999984697579994589-----99899999985
Q ss_pred HCCHHHH---------HHCCC-CCH-HHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 2030233---------10012-211-3589999735984032013-221001243203344552222
Q gi|254780276|r 154 TYPNIVG---------VKDAT-GKI-ELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 154 ~~pni~g---------iK~~~-~~~-~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
.-..+++ .+... .+. ..+.++++..+-.+.+--| ....-...+..+++|.+.|++
T Consensus 167 ~a~gFiY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~~~~~aDGvIVGSa 233 (254)
T PRK13139 167 AADGFIYCVARRGVTGSKTSFDEHVGAFLHRCRAATPLPLAVGFGVKSAADVDYLKGKADIAVVGSQ 233 (254)
T ss_pred CCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCCCEEEECHH
T ss_conf 1698699996666679886645889999999985589987997377999999999716999998889
No 309
>PRK07094 biotin synthase; Provisional
Probab=79.69 E-value=5.3 Score=20.61 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 86899999999999976998999867232501089999999865431101234430036741027899997534321024
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGA 97 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Ga 97 (292)
.++.+.+.+.++...+.|++-+++ +.||-...+.+.-.++++.+.+.. .+.+-.++|..+- +..+..+++|+
T Consensus 69 ~Ls~eeI~~~A~~a~~~G~~~~~l--qsG~~~~~~~e~~~~ii~~Ik~~~--~l~i~lSlG~l~~----e~~~~Lk~AG~ 140 (323)
T PRK07094 69 RLSPEEILECAKKAYELGYGTIVL--QSGEDPYYTDEKIADIIKEIKKEL--DVAITLSLGERSY----EEYKAWKEAGA 140 (323)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEE--ECCCCCCCCHHHHHHHHHHHHHCC--CCEEEEECCCCCH----HHHHHHHHCCC
T ss_conf 799999999999999869988999--648998866999999999986059--9459975787999----99999998597
Q ss_pred CCCCE
Q ss_conf 43200
Q gi|254780276|r 98 DALLV 102 (292)
Q Consensus 98 d~i~v 102 (292)
|-...
T Consensus 141 dry~~ 145 (323)
T PRK07094 141 DRYLL 145 (323)
T ss_pred CEEEC
T ss_conf 74412
No 310
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=79.59 E-value=4.4 Score=21.19 Aligned_cols=41 Identities=22% Similarity=0.114 Sum_probs=27.0
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCC
Q ss_conf 111201773898886899999999999976-99899986723
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITE-GSGGLVPAGTT 45 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~-gv~gi~~~G~t 45 (292)
+|.+++||+++|++.|...+++-++.+... .-+-+++.=||
T Consensus 79 iiI~V~TP~~~~~~~Dls~i~~a~~~I~~~l~~~~lVIi~ST 120 (415)
T PRK11064 79 FLIAVPTPFKGDHEPDLSYVEAAAKSIAPVLKKGDLVILEST 120 (415)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf 999889997899972020188899999975268867996378
No 311
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=79.58 E-value=5.4 Score=20.59 Aligned_cols=28 Identities=14% Similarity=0.079 Sum_probs=17.6
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 8886899999999999976998999867
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAG 43 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G 43 (292)
|.+=|.+...+.++.++.+||++|++.-
T Consensus 38 da~~D~~~Q~~~Ie~~I~qgvD~Iii~p 65 (303)
T cd01539 38 DAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7878999999999999975999999946
No 312
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=79.53 E-value=5.4 Score=20.58 Aligned_cols=98 Identities=14% Similarity=0.235 Sum_probs=59.8
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH-------HHHHH-HHHHHHHCC
Q ss_conf 9999999976998999867232501089999999865431101234430036741027-------89999-753432102
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT-------RESVE-LAQYAHSIG 96 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~-------~~~i~-~a~~a~~~G 96 (292)
+.+++-.++.||+++... .-+++.+.+...+++|+|.-+.+.++ ++++- -.+.|-++|
T Consensus 94 ~~~~~LAie~g~~a~A~~--------------lG~l~~~a~~ya~~iP~ilKlN~~~~L~~~~~~dQ~~~~sV~dA~rLG 159 (348)
T PRK09250 94 ENIVQLAIEAGCNAVAST--------------LGVLEAVARKYAHRIPFILKLNHNELLSYPNTYDQALTASVEDALRLG 159 (348)
T ss_pred HHHHHHHHHCCCCHHHHH--------------HHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 889998872474034554--------------547877677534437779995576546899987534004699998547
Q ss_pred CCCCCEECCCCCC-CCHHHHHHHHHHHHHHH---CCCCEEEECHHH
Q ss_conf 4432001234334-31788999999987530---233012100111
Q gi|254780276|r 97 ADALLVVIPYYNK-PNRRGLLAHFGEIATTV---SSPIYIYNNPSR 138 (292)
Q Consensus 97 ad~i~v~~P~~~~-~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~ 138 (292)
+.||=.. .|+. ..+.+.++=+.++.+.+ ++|++++-+|.-
T Consensus 160 a~AVG~T--IY~GS~~~~~mi~E~~~i~~eAh~~GL~tVlW~YpRG 203 (348)
T PRK09250 160 AVAVGAT--IYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRN 203 (348)
T ss_pred CCEEEEE--EECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 6465427--8469754799999999999999976980899972478
No 313
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=79.53 E-value=5.4 Score=20.58 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCE-EE--ECHHHCCCCCCH--HHHHHHHHH
Q ss_conf 0278999975343210244320012343343178899999998753023301-21--001111121110--689997432
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIY-IY--NNPSRTVIEMDV--DTMAELAAT 154 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~-iY--n~P~~~g~~~~~--~~l~~L~~~ 154 (292)
.+..-+..+|+.|+..||.|+-+-.| +..+.|.+.+++||+ ++ ++|. +.+.++| +...+|.+.
T Consensus 20 ~~~~im~~mA~Aa~~gGA~giR~~~~-----------~dI~aik~~v~lPIIGi~K~~~~~-s~VyITPt~~ev~~l~~a 87 (222)
T PRK01130 20 HSPEIMAAMALAAEQGGAVGIRANGV-----------EDIKAIREVVDVPIIGIIKRDYPD-SEVYITPTLKEVDALAAA 87 (222)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCH-----------HHHHHHHHHCCCCEEEEEECCCCC-CCEEECCCHHHHHHHHHC
T ss_conf 88799999999999689629971898-----------899999984799879999546899-973751769999999986
Q ss_pred CCHHHHHHCCCCC-------HHH-HHHHHHHCCCCEEECCCCC--CCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 0302331001221-------135-8999973598403201322--10012432033445522223211002444443117
Q gi|254780276|r 155 YPNIVGVKDATGK-------IEL-VSEQRLSCGFDFIQLSGED--SSALGFNAHGGVGCISVTANVVPRICAEFQQAMIR 224 (292)
Q Consensus 155 ~pni~giK~~~~~-------~~~-~~~~~~~~~~~~~v~~G~~--~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~ 224 (292)
--.|+++ |++.. +.. +..++... +.+ ++.-.. +.......+|++=.-+.++++-|+.-.. ....
T Consensus 88 GadiIA~-DaT~R~RP~g~~~~~~i~~i~~~~-~~l-~MAD~st~eea~~A~~~G~D~V~TTLsGYT~~t~~~---~~~~ 161 (222)
T PRK01130 88 GADIIAL-DATLRPRPDGETLAELVKRIKEKP-GQL-LMADCSTLEEGLAAAKLGFDFIGTTLSGYTEYTEGE---TPEE 161 (222)
T ss_pred CCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHH-CCE-EEEECCCHHHHHHHHHCCCCEEECCCCCCCCCCCCC---CCCC
T ss_conf 9999998-467898989968999999999982-987-898548899999999849999972334567676778---7899
Q ss_pred CCCHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
Q ss_conf 882799999999999999984--26893899999998
Q gi|254780276|r 225 GDYRQALLYQDKLMPLHQALF--MEPAVCCVKYALSR 259 (292)
Q Consensus 225 gd~~~A~~l~~~l~~l~~~~~--~~~~~~~~K~~l~~ 259 (292)
-|++-.+++-+.=.| ++. ....|.-.|.++.+
T Consensus 162 pD~~lv~~l~~~~~p---vIaEGri~tPe~a~~al~~ 195 (222)
T PRK01130 162 PDFALLKELLKAGCP---VIAEGRINTPEQAKKALEL 195 (222)
T ss_pred CCHHHHHHHHHCCCC---EEEECCCCCHHHHHHHHHC
T ss_conf 869999999958998---9974798999999999984
No 314
>pfam04909 Amidohydro_2 Amidohydrolase. These proteins are amidohydrolases that are related to pfam01979.
Probab=79.18 E-value=5.5 Score=20.50 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=71.1
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCEEC
Q ss_conf 9999999769989998672325010899999998654311012344300367410278999975-343210244320012
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELA-QYAHSIGADALLVVI 104 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a-~~a~~~Gad~i~v~~ 104 (292)
.+....-..|+....+.....+.. -..+++.+.+. .+|+.-.+++.....+++++.. +.+.+.|+.|+.+.+
T Consensus 33 ~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~~~~~~~-~~r~~~~~~~~~~~~~~a~~el~r~~~~~g~~Gv~l~~ 105 (270)
T pfam04909 33 DLLVLGAALGVARAVIVAASCRGA------NNRVLAEALKR-PGRFVGGAALPPPDPEDAVAELERRLAELGFRGVRLNP 105 (270)
T ss_pred HHHHHHHHHCCCEEEEECCCCCHH------CHHHHHHHHHC-CCCEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 999998984983499954874030------46989999847-99759999973897477999999974838806999768
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHCCCCEEEECHHH---CCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 3433-431788999999987530233012100111---11211106899974320302331
Q gi|254780276|r 105 PYYN-KPNRRGLLAHFGEIATTVSSPIYIYNNPSR---TVIEMDVDTMAELAATYPNIVGV 161 (292)
Q Consensus 105 P~~~-~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~---~g~~~~~~~l~~L~~~~pni~gi 161 (292)
.... .+.++...+-+-+.+++.++||.++-.+.. ......+..+..+++++|++.-+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~e~~~pv~iH~~~~~~~~~~~~~~~~~~~~~~~~~P~l~iv 166 (270)
T pfam04909 106 HPGGGPLLDPRLDRPIYEALAELGLPVDLHTGTGFAGEDTDASQPLLLEGLARRFPDLKIV 166 (270)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 5788777666889999999998699899945888776564613699999999978998599
No 315
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=79.11 E-value=5.6 Score=20.49 Aligned_cols=99 Identities=14% Similarity=0.112 Sum_probs=64.5
Q ss_pred HHHCCCCEEEECCCCCC-------HHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHH-HCCCC
Q ss_conf 99769989998672325-------0108999999986543110123443003----674102789999753432-10244
Q gi|254780276|r 31 QITEGSGGLVPAGTTGE-------SSTLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRESVELAQYAH-SIGAD 98 (292)
Q Consensus 31 l~~~gv~gi~~~G~tGE-------~~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~~i~~a~~a~-~~Gad 98 (292)
+-++|++-|+++-|-|- ....|.++.....+.+...++. .-+++ |.-..|.+++++-|-+.- +.|++
T Consensus 31 ~d~agvd~lLVGDSlgmvv~G~~sTl~Vsl~~mi~ht~aV~Rga~~-~~vv~DmPF~sy~~s~~~a~~nA~r~~ke~gA~ 109 (268)
T COG0413 31 FDQAGVDVLLVGDSLGMVVLGYDSTLPVTLEDMIYHTKAVRRGAPN-AFVVADLPFGSYEVSPEQALKNAARLMKEAGAD 109 (268)
T ss_pred HHHCCCCEEEEECCHHHHHCCCCCCCEECHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 3241995799936288787177886442299999888999814897-069838987456789999999999999970788
Q ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE--ECHHH
Q ss_conf 32001234334317889999999875302330121--00111
Q gi|254780276|r 99 ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY--NNPSR 138 (292)
Q Consensus 99 ~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY--n~P~~ 138 (292)
+|-+-- -.++.+.-+.++++ .+|+|-+ -.|+.
T Consensus 110 aVKlEG-------G~~~~~~i~~L~~~-gIPV~gHiGLtPQ~ 143 (268)
T COG0413 110 AVKLEG-------GEEMAETIKRLTER-GIPVMGHIGLTPQS 143 (268)
T ss_pred EEEECC-------CHHHHHHHHHHHHC-CCCEEEEECCCHHH
T ss_conf 899757-------78799999999976-99567874577233
No 316
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=79.04 E-value=5.6 Score=20.47 Aligned_cols=88 Identities=13% Similarity=0.186 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 9999999976998999867232501089999999865431101234430036-741027899997534321024432001
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
+..++-.++.+++-+.+....|....+ . .++.+...+.-...+|+++| .....-.+--+..+..+++|++++ .
T Consensus 44 e~~v~~A~~~~ad~igiSsl~G~~~~~-~---~~l~~~l~~~g~~di~vvvGG~i~i~~~dp~~~~~~L~~~Gv~~V--F 117 (137)
T PRK02261 44 EEFIDAAIETDADAILVSSLYGHGEID-C---RGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRV--F 117 (137)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHH-H---HHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHCCCCEE--E
T ss_conf 999999987399999971111266127-9---999999996799999699836216788783999999997797988--7
Q ss_pred CCCCCCCCHHHHHHHHHH
Q ss_conf 234334317889999999
Q gi|254780276|r 104 IPYYNKPNRRGLLAHFGE 121 (292)
Q Consensus 104 ~P~~~~~~~~~i~~~~~~ 121 (292)
+| ..+-+++++|.++
T Consensus 118 ~p---GT~~~~ii~~i~~ 132 (137)
T PRK02261 118 AP---GTDLEEVIDDLKA 132 (137)
T ss_pred CC---CCCHHHHHHHHHH
T ss_conf 97---8899999999999
No 317
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=78.74 E-value=5.7 Score=20.41 Aligned_cols=30 Identities=13% Similarity=-0.019 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 888689999999999997699899986723
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTT 45 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t 45 (292)
|..-|.+.....++.++.+||++|++.-..
T Consensus 41 da~~D~~~Q~~~ie~lI~qgvDaIiv~p~d 70 (274)
T cd06311 41 TASNDTEQQNAQQDLLINRKIDALVILPFE 70 (274)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 189999999999999997499999995797
No 318
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=78.63 E-value=5.7 Score=20.39 Aligned_cols=157 Identities=17% Similarity=0.124 Sum_probs=92.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH--HHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 38988868999999999999769989998672325010899999998654--3110123443003674102789999753
Q gi|254780276|r 13 FTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL--CVKTVASRVPVMAGIGSNNTRESVELAQ 90 (292)
Q Consensus 13 f~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~--~~~~~~~r~pii~gv~~~~~~~~i~~a~ 90 (292)
|..|.--++..+++..+..-+..++-+++.|--. ++..+......+. ..+.....+|+++--|.+++.+.....+
T Consensus 8 ~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt---~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~v~~~l~ 84 (226)
T COG2129 8 AVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLT---YFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPEVIDVLK 84 (226)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEECCEE---HHHCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
T ss_conf 9840333357899999987603688899953352---1323863787766678888745970899758898378889998
Q ss_pred HHHHC---------CCC----CCCEECCC--CCCCCHHHHHHHHHHHHHHHCCC--CEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 43210---------244----32001234--33431788999999987530233--012100111112111068999743
Q gi|254780276|r 91 YAHSI---------GAD----ALLVVIPY--YNKPNRRGLLAHFGEIATTVSSP--IYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 91 ~a~~~---------Gad----~i~v~~P~--~~~~~~~~i~~~~~~i~~~~~~p--i~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
.+... |+. |.+-.+|+ ++..++++|+...+.+.+..+-+ |++.+.|. .|...+
T Consensus 85 ~~~~~v~~~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~s~l~~~v~~~~~~~~Il~~HaPP-~gt~~d--------- 154 (226)
T COG2129 85 NAGVNVHGRVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIYSKLKSLVKKADNPVNILLTHAPP-YGTLLD--------- 154 (226)
T ss_pred HCCCCCCCCEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCC-CCCCCC---------
T ss_conf 6365201316885580899755628998888001579999998998875136740699953799-886546---------
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHCCCCEEECCCC
Q ss_conf 20302331001221135899997359840320132
Q gi|254780276|r 154 TYPNIVGVKDATGKIELVSEQRLSCGFDFIQLSGE 188 (292)
Q Consensus 154 ~~pni~giK~~~~~~~~~~~~~~~~~~~~~v~~G~ 188 (292)
.| .| +.-.|+ ..+++++..+.+.+. ++|+
T Consensus 155 -~~--~g-~~hvGS-~~vr~~ieefqP~l~-i~GH 183 (226)
T COG2129 155 -TP--SG-YVHVGS-KAVRKLIEEFQPLLG-LHGH 183 (226)
T ss_pred -CC--CC-CCCCCH-HHHHHHHHHHCCCEE-EEEE
T ss_conf -77--77-654460-999999997497568-9710
No 319
>TIGR03621 F420_MSMEG_2516 probable F420-dependent oxidoreductase, MSMEG_2516 family. Coenzyme F420 is produced by methanogenic archaea, a number of the Actinomycetes (including Mycobacterium tuberculosis), and rare members of other lineages. The resulting information-rich phylogenetic profile identifies candidate F420-dependent oxidoreductases within the family of luciferase-like enzymes (pfam00296), where the species range for the subfamily encompasses many F420-positive genomes without straying beyond. This family is uncharacterized, and named for member MSMEG_2516 from Mycobacterium smegmatis.
Probab=78.51 E-value=5.8 Score=20.36 Aligned_cols=54 Identities=24% Similarity=0.287 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 4102789999753432102443200123433431788999999987530233012
Q gi|254780276|r 78 GSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 78 ~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
+..+.++.++++++|+++|.|.+.+.- .+..++..-+..+.....+...+-..+
T Consensus 9 ~~~~~~~~~~~a~~ae~~Gfd~~~~~e-H~~~~~p~~~l~~~a~~T~~irlg~~v 62 (295)
T TIGR03621 9 GPESARDWVDLARRAEDLGFDVLTVPD-HLGAPAPFAALTAAAAATETLRLGTLV 62 (295)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHCCEEEEEEEE
T ss_conf 999999999999999984998999634-489999899999999857935888887
No 320
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=78.28 E-value=5.9 Score=20.32 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=16.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 00367410278999975343210244320012
Q gi|254780276|r 73 VMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 73 ii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++......+.+...+..+...+.++||+++++
T Consensus 92 ~~l~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 123 (335)
T PRK10703 92 LILCNAWNNLEKQRAYLSMLAQKRVDGLLVMC 123 (335)
T ss_pred EEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 99992789869999999999955887799976
No 321
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=78.27 E-value=5.9 Score=20.32 Aligned_cols=130 Identities=13% Similarity=0.119 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHH---HH-H----HHHHHHHHCCCC----CCCCCCCCCCCH-------
Q ss_conf 9999999999997699899986723250108999---99-9----986543110123----443003674102-------
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHE---EH-C----RIIELCVKTVAS----RVPVMAGIGSNN------- 81 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~---Er-~----~~~~~~~~~~~~----r~pii~gv~~~~------- 81 (292)
.+.+.+.=+.++++|.|-|--+-..+-...|.+- .+ . +-.+.+.+++.. |-..++|.-++.
T Consensus 52 Pd~I~~IH~aY~eAGADiIeTNTFgat~i~lady~led~v~~in~~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~ 131 (311)
T COG0646 52 PDVIEAIHRAYIEAGADIIETNTFGATTIKLADYGLEDKVYEINQKAARIARRAADEAGDPKPRFVAGSIGPTNKTLSIS 131 (311)
T ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
T ss_conf 49999999999964676787347786536575507388999999999999999986447887538987326867767768
Q ss_pred ------HHHH----HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH--CCCCEEEECHHHCCCCCCHHHHH
Q ss_conf ------7899----99753432102443200123433431788999999987530--23301210011111211106899
Q gi|254780276|r 82 ------TRES----VELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV--SSPIYIYNNPSRTVIEMDVDTMA 149 (292)
Q Consensus 82 ------~~~~----i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~--~~pi~iYn~P~~~g~~~~~~~l~ 149 (292)
.++. .+.++-..+-|+|++++-.- |-...-...+..-+++-+.. .+|+|+.-.=..+|+.++-.++.
T Consensus 132 ~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~-~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq~~~ 210 (311)
T COG0646 132 PDFAVTFDELVEAYREQVEGLIDGGADLILIETI-FDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQTIE 210 (311)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHH-CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCEECCCCCHH
T ss_conf 7666359999999999999998378758997522-168989999999999987327765479999980376123798689
Q ss_pred HH
Q ss_conf 97
Q gi|254780276|r 150 EL 151 (292)
Q Consensus 150 ~L 151 (292)
..
T Consensus 211 a~ 212 (311)
T COG0646 211 AF 212 (311)
T ss_pred HH
T ss_conf 99
No 322
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=77.98 E-value=6 Score=20.26 Aligned_cols=101 Identities=12% Similarity=0.086 Sum_probs=59.1
Q ss_pred HHHHHCCCCEEEECCCCCC-------HHCCCHHHHHHHHHHHHHCCCCCCCCCC----CCCCCHHHHHHHHHHHHH-HCC
Q ss_conf 9999769989998672325-------0108999999986543110123443003----674102789999753432-102
Q gi|254780276|r 29 EWQITEGSGGLVPAGTTGE-------SSTLSHEEHCRIIELCVKTVASRVPVMA----GIGSNNTRESVELAQYAH-SIG 96 (292)
Q Consensus 29 ~~l~~~gv~gi~~~G~tGE-------~~~Ls~~Er~~~~~~~~~~~~~r~pii~----gv~~~~~~~~i~~a~~a~-~~G 96 (292)
+.+-++|+|-++|+-|.|- ....|.+|-..-.+.|+..++. .-+++ +.-..|.+++++-|...- +.|
T Consensus 31 ~~~d~~giD~iLVGDSlgmv~~G~~~T~~vtld~mi~H~~aV~rg~~~-~~vv~DmPf~sy~~s~~~a~~nA~rl~ke~g 109 (266)
T PRK00311 31 RLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVRRGAPR-ALVVADMPFGSYQASPEQALRNAGRLMKEAG 109 (266)
T ss_pred HHHHHCCCCEEEECCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCC-CEEEECCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 999975998899775387640677566616789999999999840888-5399579876468999999999999998569
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE--ECHHH
Q ss_conf 4432001234334317889999999875302330121--00111
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY--NNPSR 138 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY--n~P~~ 138 (292)
||+|-+-. -.++.+..+.+.+ ..+|+|=+ -.|+.
T Consensus 110 adaVKlEg-------g~~~~~~i~~l~~-~GIPV~gHiGL~PQ~ 145 (266)
T PRK00311 110 AHAVKLEG-------GEELAETIRRLVE-RGIPVMGHLGLTPQS 145 (266)
T ss_pred CCEEEECC-------CCCHHHHHHHHHH-CCCCEEEEECCCCCC
T ss_conf 99899788-------8336799999998-799766541576500
No 323
>cd08039 Adenylation_DNA_ligase_Fungal The Adenylation domain of uncharacterized fungal ATP-dependent DNA ligase-like proteins is inferred by similarity to be a component of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriophages, eukarya, archaea and bacteria. This group is composed of uncharacterized fungal proteins with similarity to ATP-dependent DNA ligases. ATP dependent DNA ligases have a highly modular architecture consisting of a unique arrangement of two or more discrete domains including a DNA-binding domain, an adenylation (nucleotidyltransferase (NTase)) domain, and an oligonucleotide/oligosaccharide binding (OB)-fold domain
Probab=77.88 E-value=5.8 Score=20.37 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=9.7
Q ss_pred CCCCEEEECHHHCCCCCCHHHHH
Q ss_conf 23301210011111211106899
Q gi|254780276|r 127 SSPIYIYNNPSRTVIEMDVDTMA 149 (292)
Q Consensus 127 ~~pi~iYn~P~~~g~~~~~~~l~ 149 (292)
|.-++.|| | .+|..++-..+.
T Consensus 89 DGE~va~d-~-~~~~~lpFq~l~ 109 (235)
T cd08039 89 EGEMLVWN-D-RKSDILPFHKLR 109 (235)
T ss_pred EEEEEEEE-C-CCCCCCCHHHHH
T ss_conf 71589986-7-889607778887
No 324
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=77.27 E-value=6.2 Score=20.12 Aligned_cols=99 Identities=17% Similarity=0.236 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC----CCCCCHH-----------------------CCCHHHHHHH
Q ss_conf 120177389888689999999999997699899986----7232501-----------------------0899999998
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPA----GTTGESS-----------------------TLSHEEHCRI 59 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~----G~tGE~~-----------------------~Ls~~Er~~~ 59 (292)
-.+--|+.++++||.+.+.+.|++.++.|++-|=.. |..||.+ .=+.++..+.
T Consensus 19 G~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~g~sE~~lgkaL~~~~Rekv~LaTKlp~~~~~~~edm~r~ 98 (391)
T COG1453 19 GCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHGGESEEFLGKALKDGYREKVKLATKLPSWPVKDREDMERI 98 (391)
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHH
T ss_conf 22302234678744999999999999728764762032458874699999864215113798740587534479999999
Q ss_pred HHHHHHCCCC---CCCCCCCCCCCHHHHHHHH--HHHHHHCCCCCCCEECC
Q ss_conf 6543110123---4430036741027899997--53432102443200123
Q gi|254780276|r 60 IELCVKTVAS---RVPVMAGIGSNNTRESVEL--AQYAHSIGADALLVVIP 105 (292)
Q Consensus 60 ~~~~~~~~~~---r~pii~gv~~~~~~~~i~~--a~~a~~~Gad~i~v~~P 105 (292)
++.-.+..+- ..-+|.|+.....+...++ ..+++++-++|-....-
T Consensus 99 fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~G 149 (391)
T COG1453 99 FNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAG 149 (391)
T ss_pred HHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHCCCEEEEE
T ss_conf 999999848861010201114677899997037489999998569678863
No 325
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=77.15 E-value=6.2 Score=20.16 Aligned_cols=103 Identities=13% Similarity=0.114 Sum_probs=41.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEECHHHCCCCCCH
Q ss_conf 344300367410278999975343210-24432001234334317889999999875302--330121001111121110
Q gi|254780276|r 69 SRVPVMAGIGSNNTRESVELAQYAHSI-GADALLVVIPYYNKPNRRGLLAHFGEIATTVS--SPIYIYNNPSRTVIEMDV 145 (292)
Q Consensus 69 ~r~pii~gv~~~~~~~~i~~a~~a~~~-Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~--~pi~iYn~P~~~g~~~~~ 145 (292)
.++|+....+..++.+.++.++...+. |+.++-+-- ...+.++=++..+.|.++.+ ..+++=- +..+++
T Consensus 130 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~KiKi---g~~~~~~di~~v~~ir~~~g~~~~l~vDa-----n~~~~~ 201 (365)
T cd03318 130 DSLPVAWTLASGDTERDIAEAEEMLEAGRHRRFKLKM---GARPPADDLAHVEAIAKALGDRASVRVDV-----NQAWDE 201 (365)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHHHHHCCCCCEEEECC-----CCCCCH
T ss_conf 7774478835898199999999999808998799965---99998999999999998657896898467-----778899
Q ss_pred HHHHHHHHHCC--HHHHHHCCC--CCHHHHHHHHHHCC
Q ss_conf 68999743203--023310012--21135899997359
Q gi|254780276|r 146 DTMAELAATYP--NIVGVKDAT--GKIELVSEQRLSCG 179 (292)
Q Consensus 146 ~~l~~L~~~~p--ni~giK~~~--~~~~~~~~~~~~~~ 179 (292)
+.-.++++.+. ++.-+-+-. .|.+.+.++++..+
T Consensus 202 ~~Ai~~~~~l~~~~~~~~EeP~~~~d~~~~~~l~~~~~ 239 (365)
T cd03318 202 STAIRALPRLEAAGVELIEQPVPRENLDGLARLRSRNR 239 (365)
T ss_pred HHHHHHHHHHHHHCCCEEECCCCCCCHHHHHHHHHCCC
T ss_conf 99999999977512420337999536999998862589
No 326
>PRK03220 consensus
Probab=77.14 E-value=6.3 Score=20.09 Aligned_cols=169 Identities=18% Similarity=0.155 Sum_probs=88.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++.+.+.|++-+.+.--.|-. -....-.++++..++.+ .+|+-+|-|=-+. +.++.+-++|||-|.+-
T Consensus 33 P~~~a~~~~~~G~d~lhivDld~a~--~g~~~n~~~I~~i~~~~--~~pi~vGGGIrs~----e~~~~ll~~GadkVvig 104 (257)
T PRK03220 33 PVELAAVYDAEGADELTFLDVTASS--SGRATMLDVVRRTAEQV--FIPLTVGGGVRTV----EDVDSLLRAGADKVSVN 104 (257)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHCC--CCCEEEECCCCCH----HHHHHHHHCCCCEEECH
T ss_conf 9999999998699989999088875--67630799999998506--9648984785879----99999998197508720
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCC-------CC--------------EEEECHHHCCCCCCHH-HHHHHHHHCCHHHHH
Q ss_conf 2343343178899999998753023-------30--------------1210011111211106-899974320302331
Q gi|254780276|r 104 IPYYNKPNRRGLLAHFGEIATTVSS-------PI--------------YIYNNPSRTVIEMDVD-TMAELAATYPNIVGV 161 (292)
Q Consensus 104 ~P~~~~~~~~~i~~~~~~i~~~~~~-------pi--------------~iYn~P~~~g~~~~~~-~l~~L~~~~pni~gi 161 (292)
...+..+ ++++++++.-+- .+ .++.+-......+++. .+.++. +.+ +-.+
T Consensus 105 s~a~~~p------~~~~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~g~~v~~~g~~~~t~~~~~~~i~~~~-~~g-~gei 176 (257)
T PRK03220 105 TAAIARP------ELLAELARRFGSQCIVLSVDARRVPVGSAPTPSGFEVTTHGGRRGTGIDAVEWAARGA-ELG-VGEI 176 (257)
T ss_pred HHHHHCC------HHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCEEEEECCCEEECCCCHHHHHHHHH-HCC-CCEE
T ss_conf 6677594------7778999870986699999988625677434687499972882602875999999986-269-8889
Q ss_pred H------CC---CCCHHHHHHHHHHCCCCEEECCCCCC--CHHHHHHHCCCCCCCCCC
Q ss_conf 0------01---22113589999735984032013221--001243203344552222
Q gi|254780276|r 162 K------DA---TGKIELVSEQRLSCGFDFIQLSGEDS--SALGFNAHGGVGCISVTA 208 (292)
Q Consensus 162 K------~~---~~~~~~~~~~~~~~~~~~~v~~G~~~--~~~~~~~~G~~G~is~~~ 208 (292)
- |. ..|.+.+..+....+-++....|... .+......|++|.+.|.+
T Consensus 177 l~tdI~rDGt~~G~d~~l~~~i~~~~~~piIasGGv~s~~di~~l~~~g~~gv~~g~a 234 (257)
T PRK03220 177 LLNSMDADGTKAGFDLEMLRAVRAAVTVPVIASGGAGAVEHFAPAVAAGADAVLAASV 234 (257)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHH
T ss_conf 9998868660237896999999974899989987899999999999789979987468
No 327
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=76.95 E-value=6.4 Score=20.06 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCC-----------CCCCCCCHHHHHHH
Q ss_conf 6899999999999976998999867232501089999999865431101234430-----------03674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPV-----------MAGIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pi-----------i~gv~~~~~~~~i~ 87 (292)
-|.+.-++.++.+.+.+|+|+.+.+++- + ++..+.++. ..+|+ +..|...+..-+-.
T Consensus 39 ~d~~~e~~~i~~l~~~~vdGiIi~~~~~-----~-~~~~~~l~~------~~iP~V~~~~~~~~~~~~~V~~Dn~~~~~~ 106 (268)
T cd06273 39 YDLDREYAQARKLLERGVDGLALIGLDH-----S-PALLDLLAR------RGVPYVATWNYSPDSPYPCVGFDNREAGRL 106 (268)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC-----C-HHHHHHHHH------CCCCEEEECCCCCCCCCCEEEECHHHHHHH
T ss_conf 9989999999999965999999918999-----9-899999997------599899984657889997899677999999
Q ss_pred HHHHHHHCCCCCCCEEC-CC-CCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 75343210244320012-34-33431788999999987530233
Q gi|254780276|r 88 LAQYAHSIGADALLVVI-PY-YNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~-P~-~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
.+++..+.|..-+..+. |. ......+-...| ++..+..+++
T Consensus 107 ~~~~L~~~G~~~i~~i~~~~~~~~~~~~R~~gf-~~al~~~~~~ 149 (268)
T cd06273 107 AARHLIALGHRRIAMIFGPTQGNDRARARRAGV-RAALAEAGLE 149 (268)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHH-HHHHHHHCCC
T ss_conf 999998729874799946877777899999999-9999980999
No 328
>pfam01068 DNA_ligase_A_M ATP dependent DNA ligase domain. This domain belongs to a more diverse superfamily, including pfam01331 and pfam01653.
Probab=76.88 E-value=5.1 Score=20.75 Aligned_cols=16 Identities=0% Similarity=-0.054 Sum_probs=8.2
Q ss_pred CCCCEEEECHHHCCCC
Q ss_conf 2330121001111121
Q gi|254780276|r 127 SSPIYIYNNPSRTVIE 142 (292)
Q Consensus 127 ~~pi~iYn~P~~~g~~ 142 (292)
++-+.+|++....+.+
T Consensus 101 ~~~~~vFDil~~~~~~ 116 (190)
T pfam01068 101 PLCFFVFDVLYLDGES 116 (190)
T ss_pred CEEEEEEEEEEECCCC
T ss_conf 7289999876788753
No 329
>PRK13126 consensus
Probab=76.83 E-value=6.4 Score=20.04 Aligned_cols=182 Identities=18% Similarity=0.164 Sum_probs=96.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC----CCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHH
Q ss_conf 738988868999999999999769989998672----3250108999999986543110123443003-67410278999
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGT----TGESSTLSHEEHCRIIELCVKTVASRVPVMA-GIGSNNTRESV 86 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~----tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~-gv~~~~~~~~i 86 (292)
||---|--|.+...+.++.+ +.|+|-+=++=- ..++...-..-++ .++.-.+ ..++|++. +-...-.....
T Consensus 10 ~yitaG~P~~~~t~~~l~~l-~~gaDiiElGiPFSDP~ADGPvIQ~A~~~-Al~~G~~--~~~~pivlM~Y~N~~~~g~~ 85 (237)
T PRK13126 10 VYLTAGWPSADTFLEALAGL-SGLVDFFELGIPTPNPKYDGPYIRLAHRE-AEEPGWD--APKAPTYLMAYWEDYAGSPA 85 (237)
T ss_pred EEEECCCCCHHHHHHHHHHH-HCCCCEEEECCCCCCCCCCCHHHHHHHHH-HHHCCCC--CCCCCEEEEECCHHHHHHHH
T ss_conf 88717179879999999985-54899999899888877768999999999-9985998--56875899972987765699
Q ss_pred HHHHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHH--H
Q ss_conf 97534321024432001-23433431788999999987530233-01210011111211106899974320302331--0
Q gi|254780276|r 87 ELAQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP-IYIYNNPSRTVIEMDVDTMAELAATYPNIVGV--K 162 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p-i~iYn~P~~~g~~~~~~~l~~L~~~~pni~gi--K 162 (292)
++.+.|++.|+||+++. .|+ ...+-.+.|.+.++..++. |.+. .|. -+.+.+.++++.-..++++ +
T Consensus 86 ~f~~~~~~aGvdGlIipDLP~----e~~ee~~~~~~~~~~~gl~~I~lv-~pt-----t~~~ri~~i~~~s~gfiYvs~~ 155 (237)
T PRK13126 86 ELFETAAEVGARGVLAPDLLI----DFPGDLERYLELSREYGLAPSFFI-PSK-----FPHRLLRRLASLEPDFIYLGLY 155 (237)
T ss_pred HHHHHHHHCCCCEEEECCCCC----CCCHHHHHHHHHHHHCCCCEEEEE-CCC-----CHHHHHHHHHHHCCCEEEEEEE
T ss_conf 999999874997388368887----781778999999997699779973-899-----8399999999858987999865
Q ss_pred CCCC-----CHH-HHHHHHHHCCCCEEECCCCC----CCHHHHHHHCCCCCCCCCC
Q ss_conf 0122-----113-58999973598403201322----1001243203344552222
Q gi|254780276|r 163 DATG-----KIE-LVSEQRLSCGFDFIQLSGED----SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 163 ~~~~-----~~~-~~~~~~~~~~~~~~v~~G~~----~~~~~~~~~G~~G~is~~~ 208 (292)
=.+| +.. .+..+++..+ ++-+..|.. ++.-.....|++|.+.|++
T Consensus 156 gvTG~~~~~~~~~~i~~ir~~~~-~~Pv~vGFGI~t~e~~~~~~~~~aDGvIVGSa 210 (237)
T PRK13126 156 AATGIELPVYVERNVKTIRGLAG-DVYLVAGFAIDSPEKAARLVKAGADGVVVGTA 210 (237)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 26676415679999999998578-99779994539999999998648999998789
No 330
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=76.73 E-value=6.4 Score=20.02 Aligned_cols=95 Identities=9% Similarity=0.144 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC------------CCCCCCHHHHHHHH
Q ss_conf 999999999999769989998672325010899999998654311012344300------------36741027899997
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM------------AGIGSNNTRESVEL 88 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii------------~gv~~~~~~~~i~~ 88 (292)
.+..+...+.+....|+|+.+.++.. + ++..+.++ + .++|++ ..|...+..-....
T Consensus 46 ~~~~~~~~~~l~~~~vDGiIi~~~~~-----~-~~~~~~l~---~---~~iP~V~i~r~~~~~~~~~~V~~Dn~~~~~~a 113 (270)
T cd06294 46 EELLEEVKKMIQQKRVDGFILLYSRE-----D-DPIIDYLK---E---EKFPFVVIGKPEDDKENITYVDNDNIQAGYDA 113 (270)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCC-----C-HHHHHHHH---H---CCCCEEEECCCCCCCCCCEEEECCHHHHHHHH
T ss_conf 99999999999827998899957989-----8-49999999---7---69999998775688899849937779999999
Q ss_pred HHHHHHCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 534321024432001-2343343178899999998753023
Q gi|254780276|r 89 AQYAHSIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSS 128 (292)
Q Consensus 89 a~~a~~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~ 128 (292)
++|.-+.|..-+..+ .|.....+.+ =.+-|++-+...++
T Consensus 114 ~~~L~~~Ghr~I~~i~~~~~~~~~~~-R~~Gf~~al~~~g~ 153 (270)
T cd06294 114 TEYLIKLGHKKIAFVGGDLDLEVTQD-RLQGYKQALEDHGI 153 (270)
T ss_pred HHHHHHCCCCEEEEECCCCCCHHHHH-HHHHHHHHHHHCCC
T ss_conf 99999769956999818998658999-99999999998699
No 331
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=76.61 E-value=6.5 Score=19.99 Aligned_cols=94 Identities=10% Similarity=0.016 Sum_probs=58.6
Q ss_pred CCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCE------ECCCCCC-CCHHHHHHHHHHHHHHHCCCCEE--E---
Q ss_conf 1234430036-74102789999753432102443200------1234334-31788999999987530233012--1---
Q gi|254780276|r 67 VASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLV------VIPYYNK-PNRRGLLAHFGEIATTVSSPIYI--Y--- 133 (292)
Q Consensus 67 ~~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v------~~P~~~~-~~~~~i~~~~~~i~~~~~~pi~i--Y--- 133 (292)
..++..+|+| |+-.|-+.+.+.|+.++++|++.+-- ..|+.|+ +.. +=.++++++.+..++||+- .
T Consensus 12 ~~~k~~lIAGPC~iES~e~~~~~A~~lk~~g~~~~r~~~~K~RTs~~sfrG~G~-egL~~L~~vk~~~glpi~TdVh~~~ 90 (250)
T PRK13397 12 TCSKNNFIVGPCSIESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIMSER 90 (250)
T ss_pred CCCCCCEEECCCHHCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHCCCCEEEECCCHH
T ss_conf 888887885587330999999999999984988575362688899977678888-8999999999983997488479999
Q ss_pred ------------ECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf ------------0011111211106899974320302331001
Q gi|254780276|r 134 ------------NNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 134 ------------n~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
++|.+.= -..|++..++ +....+-+|..
T Consensus 91 q~e~v~~~vDilQIpAfl~--rqtdLl~a~a-~t~kpV~iKkg 130 (250)
T PRK13397 91 QLEEAYDYLDVIQVGARNM--QNFEFLKTLS-HIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHCCEEEECHHHH--CCHHHHHHHH-HHCCEEEECCC
T ss_conf 9999984474898772640--4989999987-30980897887
No 332
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=76.43 E-value=6.6 Score=19.96 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=14.5
Q ss_pred CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 2443200123433431788999999987530233012
Q gi|254780276|r 96 GADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 96 Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
|+|.|-+-.-++...+.+.+.+-.+.+.+.+++|+++
T Consensus 24 gaD~vEiRlD~l~~~~~~~~~~~i~~l~~~~~~piI~ 60 (225)
T cd00502 24 GADAVELRVDLLEDPSIDDVAEQLSLLRELTPLPIIF 60 (225)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 9898999870367867788999999998559998899
No 333
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=76.32 E-value=6.6 Score=19.94 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECC
Q ss_conf 6899999999999976998999867
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAG 43 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G 43 (292)
-|.+...+.++.++.+|++||++..
T Consensus 39 ~d~~~Q~~~i~~lia~~vD~Iii~p 63 (288)
T cd01538 39 GDPAKQISQIENMIAKGVDVLVIAP 63 (288)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999999999999984998999867
No 334
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=75.79 E-value=6.8 Score=19.84 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 7889999999875302
Q gi|254780276|r 112 RRGLLAHFGEIATTVS 127 (292)
Q Consensus 112 ~~~i~~~~~~i~~~~~ 127 (292)
-..+.+-.+.|++...
T Consensus 95 ~s~l~~~~~~i~~~l~ 110 (185)
T pfam03721 95 LTYVESAARTIGPVLK 110 (185)
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 3599999999974467
No 335
>pfam04481 DUF561 Protein of unknown function (DUF561). Protein of unknown function found in a cyanobacterium, and the chloroplasts of algae.
Probab=75.75 E-value=6.8 Score=19.84 Aligned_cols=54 Identities=15% Similarity=0.260 Sum_probs=40.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 4430036741027899997534321024432001234334317889999999875302330121
Q gi|254780276|r 70 RVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 70 r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
-++||.|...++...+...+|.|+..||+.+=+.. +.++++. +.+.+++||++-
T Consensus 14 alKVIsGL~NFd~~~V~~i~~AA~~ggAt~vDIA~-------dp~LV~~---v~~~~~lPiCVS 67 (243)
T pfam04481 14 AIKVISGLNNFNYEQVLKIARASQIAKATYVDIAA-------DPQLVKV---VKSVSNIPICVS 67 (243)
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEECC-------CHHHHHH---HHHHCCCCEEEE
T ss_conf 07764072326989999999998715997687417-------9999999---997289985860
No 336
>PRK13597 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=75.69 E-value=6.8 Score=19.83 Aligned_cols=176 Identities=17% Similarity=0.158 Sum_probs=90.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++++.+.|++-+.+.--.|- .-+...-.++++..++.+ .+|+-+|=| -++ ++.++.+-+.|||-|.+-
T Consensus 33 P~~~a~~~~~~Gad~lhlvDld~a--~~~~~~n~~~I~~i~~~~--~vpiqvGGG-Irs---~e~~~~ll~~GadkViig 104 (252)
T PRK13597 33 PVEAARAYDEAGADELVFLDISAT--HEERAILLDVVARVAERV--FIPLTVGGG-VRS---LEDARKLLLSGADKVSVN 104 (252)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCC--CCCCHHHHHHHHHHHHHC--CCCEEEECC-CCC---HHHHHHHHHCCCCEEEEC
T ss_conf 999999999869999999956466--668663799999998626--982898477-130---899999985698779832
Q ss_pred CCCCCCCCH-HHHHHHHH--HHHHHHCC------CCEEEECHHHCCCCCCH-HHHHHHHHHCCHHHHHH------CC---
Q ss_conf 234334317-88999999--98753023------30121001111121110-68999743203023310------01---
Q gi|254780276|r 104 IPYYNKPNR-RGLLAHFG--EIATTVSS------PIYIYNNPSRTVIEMDV-DTMAELAATYPNIVGVK------DA--- 164 (292)
Q Consensus 104 ~P~~~~~~~-~~i~~~~~--~i~~~~~~------pi~iYn~P~~~g~~~~~-~~l~~L~~~~pni~giK------~~--- 164 (292)
.-.+..|.- .++.+.|- .|.-+.|. +.+..+. ......+++ +.+.++. +.+ +-.+- |.
T Consensus 105 S~a~~np~~i~~~~~~fG~q~Iv~~iD~~~~~~~~~v~~~~-~~~~~~~~~~d~~~~~~-~~G-~geil~tdI~rDGt~~ 181 (252)
T PRK13597 105 SAAVRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAG-GRVPTGLHAVEWAVKGV-ELG-AGEILLTSMDRDGTKE 181 (252)
T ss_pred HHHHHCCHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEECC-CEEECCCCHHHHHHHHH-HHC-CCEEEEEEECCCCCCC
T ss_conf 66674937899999874996529999888618974167538-72756976999999999-648-9999997573768444
Q ss_pred CCCHHHHHHHHHHCCCCEEECCCCC--CCHHHHHHHCCCCCCCCCCCC
Q ss_conf 2211358999973598403201322--100124320334455222232
Q gi|254780276|r 165 TGKIELVSEQRLSCGFDFIQLSGED--SSALGFNAHGGVGCISVTANV 210 (292)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~v~~G~~--~~~~~~~~~G~~G~is~~~n~ 210 (292)
.+|.+.+..+.+..+-++....|.. ..+......|++|++.|.+-.
T Consensus 182 G~d~~l~~~i~~~~~~pvIasGGv~s~~dl~~l~~~g~~gvi~G~al~ 229 (252)
T PRK13597 182 GYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFH 229 (252)
T ss_pred CCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEHHHHH
T ss_conf 769599999985079989997898999999999878996998712767
No 337
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=75.58 E-value=6.9 Score=19.81 Aligned_cols=74 Identities=11% Similarity=0.098 Sum_probs=46.0
Q ss_pred HHHHHHHCCCC-CCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 86543110123-4430036-741027899997534321024432001234334317889999999875302330121001
Q gi|254780276|r 59 IIELCVKTVAS-RVPVMAG-IGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 59 ~~~~~~~~~~~-r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
..+.+++..++ .++++-. ....+.+++.+.++.+++.++|++++..+-|.. ...+ -.++...+.|++++++|
T Consensus 24 ~~~~v~~~l~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~vdgli~~~~tf~~--~~~~----~~~~~~~~~Pvl~~~~~ 97 (452)
T cd00578 24 YAREVADLLNELPVEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGP--AKMW----IAGLSELRKPVLLLATQ 97 (452)
T ss_pred HHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC--HHHH----HHHHHHCCCCEEEEECC
T ss_conf 99999999706997399888404899999999999877599799990586687--7999----99998579989999479
Q ss_pred HH
Q ss_conf 11
Q gi|254780276|r 137 SR 138 (292)
Q Consensus 137 ~~ 138 (292)
..
T Consensus 98 ~~ 99 (452)
T cd00578 98 FN 99 (452)
T ss_pred CC
T ss_conf 87
No 338
>PRK01109 ATP-dependent DNA ligase; Provisional
Probab=75.44 E-value=5.9 Score=20.30 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 01089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 48 SSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 48 ~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
...++..||.++++.+++. .+++.+.-.....+.++..++-+.|-+.|..|+|+=
T Consensus 354 l~~~pl~eRr~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~EGlmiK 408 (589)
T PRK01109 354 LTDKPLPERRKKLEEIVKE-NDKVKLAERIITDDVEELEKFFHQAIEEGCEGLMAK 408 (589)
T ss_pred HHCCCHHHHHHHHHHHCCC-CCCEEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 1107899999999985187-885698414755999999999999986476523630
No 339
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=75.35 E-value=7 Score=19.77 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=61.8
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE--CCCCCCCCHHHHHHHH------
Q ss_conf 01089999999865431101234430036741027899997534321024432001--2343343178899999------
Q gi|254780276|r 48 SSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV--IPYYNKPNRRGLLAHF------ 119 (292)
Q Consensus 48 ~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~--~P~~~~~~~~~i~~~~------ 119 (292)
..+.|.||- .+.+++ +..++.--..-+.+.++.++|+++|+.++++. .|..- ..+.++..-|
T Consensus 102 ~ss~s~EeV-------a~~~~g--~~wfQLY~~~r~~~~~li~RA~~aG~~alvlTvD~pv~G-~Rerd~rngf~~P~~~ 171 (361)
T cd04736 102 ASNMSIEDV-------ARQADG--DLWFQLYVVHRELAELLVKRALAAGYTTLVLTTDVAVNG-YRERDLRNGFAIPFRY 171 (361)
T ss_pred CCCCCHHHH-------HHHCCC--CEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCHHHHCCCCCCCCC
T ss_conf 999999999-------862599--847998872879999999999985998689950788878-8835432256788655
Q ss_pred --HHHHHHHCCCCEEEEC-----HHHCCCC----CCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCCCCEEE---C
Q ss_conf --9987530233012100-----1111121----110689997432030233100122113589999735984032---0
Q gi|254780276|r 120 --GEIATTVSSPIYIYNN-----PSRTVIE----MDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFDFIQ---L 185 (292)
Q Consensus 120 --~~i~~~~~~pi~iYn~-----P~~~g~~----~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~~~~~~~~~v---~ 185 (292)
+.+.+....|-+..++ |...+.. ............ .=+.+.+++.+..+++..+.++.+ .
T Consensus 172 ~~~~~~~~~~~P~w~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~~tW~di~wlr~~w~~plilKGI~ 245 (361)
T cd04736 172 TPRVLLDGILHPRWLLRFLRNGMPQLANFASDDAIDVEVQAALMSR------QMDASFNWQDLRWLRDLWPHKLLVKGIV 245 (361)
T ss_pred CHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH------CCCCCCCHHHHHHHHHHCCCCEEEECCC
T ss_conf 6778877515938899765027731023467777770578899884------3688999999999998669974552148
Q ss_pred CCCCCCHHHHHHHCCCCCC
Q ss_conf 1322100124320334455
Q gi|254780276|r 186 SGEDSSALGFNAHGGVGCI 204 (292)
Q Consensus 186 ~G~~~~~~~~~~~G~~G~i 204 (292)
+.. -.......|++|.+
T Consensus 246 ~~e--DA~~A~~~G~dgIi 262 (361)
T cd04736 246 TAE--DAKRCIELGADGVI 262 (361)
T ss_pred CHH--HHHHHHHCCCCEEE
T ss_conf 999--99999876999999
No 340
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=75.24 E-value=7 Score=19.75 Aligned_cols=166 Identities=17% Similarity=0.174 Sum_probs=97.5
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC---CCCCCCC--CCCCHHHHHHHHHHH
Q ss_conf 88689999999999997699899986723250108999999986543110123---4430036--741027899997534
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS---RVPVMAG--IGSNNTRESVELAQY 91 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~---r~pii~g--v~~~~~~~~i~~a~~ 91 (292)
.....+.++++++...+.++.++.+.-. + ++.+.+..++ ++-.++| -|..+++.-+..++.
T Consensus 12 ~~~T~~~i~~l~~~A~~~~~aaVcV~p~-----------~---v~~a~~~L~~s~v~v~tvigFP~G~~~~~~K~~E~~~ 77 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVNPC-----------F---VPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEARE 77 (203)
T ss_pred CCCCHHHHHHHHHHHHHHCCEEEEECHH-----------H---HHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 8899999999999998759839998999-----------9---9999998448997267771689998868789999999
Q ss_pred HHHCCCCCCCEECCCC-CC-CCHHHHHHHHHHHHHHHC-CCC-EEEECHHHCCCCCCHHHHHHHHHHC--CHHHHHHCCC
Q ss_conf 3210244320012343-34-317889999999875302-330-1210011111211106899974320--3023310012
Q gi|254780276|r 92 AHSIGADALLVVIPYY-NK-PNRRGLLAHFGEIATTVS-SPI-YIYNNPSRTVIEMDVDTMAELAATY--PNIVGVKDAT 165 (292)
Q Consensus 92 a~~~Gad~i~v~~P~~-~~-~~~~~i~~~~~~i~~~~~-~pi-~iYn~P~~~g~~~~~~~l~~L~~~~--pni~giK~~~ 165 (292)
|-+.|||-+=+..++. ++ ...+.+.+-.+++.++++ .++ ++-..+. ++.+.+.+.++-. -..-.||-|+
T Consensus 78 ai~~GAdEiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~-----L~~~ei~~a~~~a~~aGadfvKTST 152 (203)
T cd00959 78 AIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGL-----LTDEEIIKACEIAIEAGADFIKTST 152 (203)
T ss_pred HHHCCCCEEEEECCHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----CCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99829987775123999960709999999999987628882699974465-----9999999999999982978897158
Q ss_pred C------CHHHHHHHHHHCCCCEEE--CCCCCC--CHHHHHHHCCC
Q ss_conf 2------113589999735984032--013221--00124320334
Q gi|254780276|r 166 G------KIELVSEQRLSCGFDFIQ--LSGEDS--SALGFNAHGGV 201 (292)
Q Consensus 166 ~------~~~~~~~~~~~~~~~~~v--~~G~~~--~~~~~~~~G~~ 201 (292)
| .++....+++..++++.+ -.|-.. .....+..|++
T Consensus 153 G~~~~gat~e~v~~m~~~~~~~~giKasGGIrt~~~a~~~l~aGa~ 198 (203)
T cd00959 153 GFGPGGATVEDVKLMKEAVGGRVGVKAAGGIRTLEDALAMIEAGAT 198 (203)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCH
T ss_conf 8688998999999999983878607715897999999999981841
No 341
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=75.19 E-value=7 Score=19.74 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHHHHHHHHCCCCEEEEC-CCCCCHHC
Q ss_conf 9999999997699899986-72325010
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPA-GTTGESST 50 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~-G~tGE~~~ 50 (292)
..++++-..+.|++++.++ |..+|...
T Consensus 63 ~~~Ii~~A~~~g~dAIHPGYGFLSEna~ 90 (449)
T PRK06111 63 LEKIIEIAKKTGAEAIHPGYGLLSENAS 90 (449)
T ss_pred HHHHHHHHHHHCCCEEECCCCCCCCCHH
T ss_conf 9999999998399999779873116989
No 342
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=75.15 E-value=7.1 Score=19.73 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCC-CCC-CC--CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6899999999999976998999867232501089999999865431101-234-43--0036741027899997534321
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTV-ASR-VP--VMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~-~~r-~p--ii~gv~~~~~~~~i~~a~~a~~ 94 (292)
-|.+..++.++.+.+.+|+|+.+.++. .+.+....+.+.-.-.+ -++ .+ -+..|...+..-....+++..+
T Consensus 39 ~~~~~e~~~l~~l~~~~vDGiIi~~~~-----~~~~~~~~l~~~~iPvV~id~~~~~~~~~~V~~d~~~~~~~a~~~L~~ 113 (265)
T cd06299 39 ENPETENRYLDNLLSQRVDGIIVVPHE-----QSAEQLEDLLKRGIPVVFVDREITGSPIPFVTSDPQPGMTEAVSLLVA 113 (265)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECC-----CCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 998999999999994799999998067-----998999999966998998378689998868996769999999999997
Q ss_pred CCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 0244320012-343343178899999998753023
Q gi|254780276|r 95 IGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSS 128 (292)
Q Consensus 95 ~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~ 128 (292)
.|..-+..+. |.... +..+=.+-|++.+...++
T Consensus 114 ~G~~~i~~i~~~~~~~-~~~~R~~gf~~a~~~~~~ 147 (265)
T cd06299 114 LGHKKIGYISGPQDTS-TGRERLEAFRQACASLGL 147 (265)
T ss_pred CCCCEEEEECCCCCCH-HHHHHHHHHHHHHHHCCC
T ss_conf 4998388604898875-699999999999997699
No 343
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=75.14 E-value=7.1 Score=19.73 Aligned_cols=135 Identities=21% Similarity=0.198 Sum_probs=78.1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHH--------HHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 888689999999999997699899986723250108999999--------986543110123443003674102789999
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHC--------RIIELCVKTVASRVPVMAGIGSNNTRESVE 87 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~--------~~~~~~~~~~~~r~pii~gv~~~~~~~~i~ 87 (292)
.|.++.+.+.+.++.+.+. .-.|.+-.+.++=.+-+. ++++.++..-..=--|+++.|=.+.+++.+
T Consensus 67 GGq~t~e~~~~~i~ql~~~-----lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~E 141 (717)
T COG4981 67 GGQVTEEIFTNAIEQLVSL-----LEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVE 141 (717)
T ss_pred CCCCCHHHHHHHHHHHHHC-----CCCCCCCEEEEEEECHHHHHHCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHH
T ss_conf 8503899999999999840-----58886211567986567866337767878999846997241797269884899999
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECHHHCCCC--------CCHHHHHHHHHHCCHH
Q ss_conf 7534321024432001234334317889999999875302-330121001111121--------1106899974320302
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS-SPIYIYNNPSRTVIE--------MDVDTMAELAATYPNI 158 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~-~pi~iYn~P~~~g~~--------~~~~~l~~L~~~~pni 158 (292)
+++.....|...+. ++|..=+.++-.-.|+++.+ .||+++=--.+.|-. +=..++.+|- .++||
T Consensus 142 lI~~L~~~G~~yv~------fKPGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSweDld~llL~tYs~lR-~~~NI 214 (717)
T COG4981 142 LIEELGDDGFPYVA------FKPGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSWEDLDDLLLATYSELR-SRDNI 214 (717)
T ss_pred HHHHHHHCCCEEEE------ECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHCCCHHHHHHHHHH-CCCCE
T ss_conf 99987645861687------667729999999999860899856999715766775554220208999999984-57977
Q ss_pred HHHH
Q ss_conf 3310
Q gi|254780276|r 159 VGVK 162 (292)
Q Consensus 159 ~giK 162 (292)
+-+-
T Consensus 215 vl~v 218 (717)
T COG4981 215 VLCV 218 (717)
T ss_pred EEEE
T ss_conf 9996
No 344
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=75.07 E-value=7.1 Score=19.72 Aligned_cols=213 Identities=14% Similarity=0.087 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC---CHHCCCHHHHHHHHHHHHHCCCCCCCC--------CCCCCCCHHHHHHH
Q ss_conf 6899999999999976998999867232---501089999999865431101234430--------03674102789999
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTG---ESSTLSHEEHCRIIELCVKTVASRVPV--------MAGIGSNNTRESVE 87 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tG---E~~~Ls~~Er~~~~~~~~~~~~~r~pi--------i~gv~~~~~~~~i~ 87 (292)
+-.+......+.+-+.|++.|=+.|.+. -...|..+++.++-.. .+... +.++ ++|-....-+-+..
T Consensus 23 ~~~~d~l~IA~~ld~~Gv~siE~~GgAtfd~~~r~l~Edpwerlr~i-~~~~~-nt~lq~LlRg~n~vGy~~~pddvv~~ 100 (463)
T PRK12331 23 MTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRAI-RKAVK-NTKLQMLLRGQNLLGYRNYADDVVES 100 (463)
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCHHHHHHHH-HHHCC-CCHHHHHHHCCCCCCCCCCCCHHHHH
T ss_conf 78999999999998639848984777119999998588989999999-98678-84568987003324311378089999
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHH-HHHHHHHHHHHHHC--CCCEEEECHHHCCCCCCHHHHHHHHHHC----CHHHH
Q ss_conf 75343210244320012343343178-89999999875302--3301210011111211106899974320----30233
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRR-GLLAHFGEIATTVS--SPIYIYNNPSRTVIEMDVDTMAELAATY----PNIVG 160 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~-~i~~~~~~i~~~~~--~pi~iYn~P~~~g~~~~~~~l~~L~~~~----pni~g 160 (292)
..+.+.++|+|.+-+.-+ +++- .+....+.+.++-. ...+.|..... .+.+.+.+++++. -..+.
T Consensus 101 ~v~~a~~~Gidv~rifd~----lndi~nl~~ai~~~k~~G~~~~~~i~yt~sp~----~t~~yyv~~a~~l~~~Gad~I~ 172 (463)
T PRK12331 101 FVQKSIENGIDIIRIFDA----LNDVRNLQTAVKATKKAGGHAQVAISYTTSPV----HTIDYFVKLAKEMQEIGADSIC 172 (463)
T ss_pred HHHHHHHCCCCEEEEEEC----CCHHHHHHHHHHHHHHCCCEEEEEEEEECCCC----CCHHHHHHHHHHHHHCCCCEEE
T ss_conf 999999859997887405----66467789999999970786999999725886----7699999999999964998899
Q ss_pred HHCCCCC--HHHHH----HHHHHCCCCEEECCCCCC------CHHHHHHHCCCC---CCCCCCCCCCC-HHHHHHHHHCC
Q ss_conf 1001221--13589----999735984032013221------001243203344---55222232110-02444443117
Q gi|254780276|r 161 VKDATGK--IELVS----EQRLSCGFDFIQLSGEDS------SALGFNAHGGVG---CISVTANVVPR-ICAEFQQAMIR 224 (292)
Q Consensus 161 iK~~~~~--~~~~~----~~~~~~~~~~~v~~G~~~------~~~~~~~~G~~G---~is~~~n~~P~-~~~~l~~~~~~ 224 (292)
|||++|- +.... .+++..+-.+.+ -+++. ..+.+...|++. +++.+++..-+ -...++.+++.
T Consensus 173 ikD~aGll~P~~~~eLV~aLk~~~~lpI~~-HtH~t~Gla~an~laAieAGaDivD~a~~~~s~gtsqP~~~s~v~~l~~ 251 (463)
T PRK12331 173 IKDMAGILTPYVAYELVKCIKENVTVPLEV-HTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPATESMVIALQD 251 (463)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHC
T ss_conf 867867768899999999999744985699-8368875799999999984999996235354679789879999999853
Q ss_pred C------CCHHHHHHHHHHHHHHH
Q ss_conf 8------82799999999999999
Q gi|254780276|r 225 G------DYRQALLYQDKLMPLHQ 242 (292)
Q Consensus 225 g------d~~~A~~l~~~l~~l~~ 242 (292)
- |.+...++.+-+..+++
T Consensus 252 ~~~~~~ld~~~l~~i~~y~~~vr~ 275 (463)
T PRK12331 252 LGYDTGLDLEELSEIAEYFNPIRD 275 (463)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899999899999999999999999
No 345
>TIGR03558 oxido_grp_1 luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296.
Probab=75.00 E-value=5.5 Score=20.51 Aligned_cols=60 Identities=23% Similarity=0.370 Sum_probs=37.2
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCEE----CCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 3443003674-1027899997534321024432001----2343343178899999998753023
Q gi|254780276|r 69 SRVPVMAGIG-SNNTRESVELAQYAHSIGADALLVV----IPYYNKPNRRGLLAHFGEIATTVSS 128 (292)
Q Consensus 69 ~r~pii~gv~-~~~~~~~i~~a~~a~~~Gad~i~v~----~P~~~~~~~~~i~~~~~~i~~~~~~ 128 (292)
+..||-.|-+ ....+++++++++|+++|+|.+.+. .|++..+++.-+..+...-.+.+.+
T Consensus 5 d~~~~~~g~~~~e~~~~~iela~~Ae~lGfd~~W~~EHH~~~~~~~psP~vlla~~a~~T~~Irl 69 (323)
T TIGR03558 5 DLSPIREGSTAADALRNTVELAQHAERLGYHRFWVAEHHNMPGIASSAPEVLIGHIAAATSRIRV 69 (323)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEE
T ss_conf 23756899799999999999999999849977982113799987677899999999985791375
No 346
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=74.86 E-value=7.2 Score=19.68 Aligned_cols=25 Identities=12% Similarity=0.094 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 2789999753432102443200123
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLVVIP 105 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v~~P 105 (292)
+.+...+..+...+..+||+++.++
T Consensus 97 ~~~~~~~~l~~l~~~~vdGiIi~~~ 121 (327)
T PRK10423 97 DEQRMNRNLETLMQKRVDGLLLLCT 121 (327)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 8799999999999559876999747
No 347
>pfam00282 Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain.
Probab=74.76 E-value=5.4 Score=20.57 Aligned_cols=48 Identities=13% Similarity=0.116 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECHHHC--CCCCCHHHHHHHHHHC
Q ss_conf 34317889999999875302330121001111--1211106899974320
Q gi|254780276|r 108 NKPNRRGLLAHFGEIATTVSSPIYIYNNPSRT--VIEMDVDTMAELAATY 155 (292)
Q Consensus 108 ~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~--g~~~~~~~l~~L~~~~ 155 (292)
++++.+.+.+-.++.-++...|+++--+-..| |..=+.+.+.++++++
T Consensus 173 ~~m~~~~L~~~i~~~~~~g~~p~~VvataGTT~tGaiD~l~~i~~i~~~~ 222 (370)
T pfam00282 173 GKMRGMDLEKAIEEDKENGLIPFFVCATLGTTGSGAFDPLQELGDICNKY 222 (370)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHC
T ss_conf 88299999999999986799744999863771771347899999999983
No 348
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=74.70 E-value=7.2 Score=19.65 Aligned_cols=100 Identities=14% Similarity=0.121 Sum_probs=57.7
Q ss_pred HHHHHHHHHHCCCCEEEECCCC---CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC------C-------CHHHHHHH
Q ss_conf 9999999997699899986723---250108999999986543110123443003674------1-------02789999
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTT---GESSTLSHEEHCRIIELCVKTVASRVPVMAGIG------S-------NNTRESVE 87 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~t---GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~------~-------~~~~~~i~ 87 (292)
+.+-++...+.|++.+-++-.. .....++.++-.++-+...+. .+|++++.+ + .|..-.++
T Consensus 12 ~~~a~~~a~~~g~~~~QiF~~~pr~w~~~~~~~~~~~~f~~~~~~~---~i~~~~Ha~YlINLas~~~e~~~kS~~~l~~ 88 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKEN---NIDVSVHAPYLINLASPDKEKVEKSIERLID 88 (273)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC---CCCEEEECCCEECCCCCCHHHHHHHHHHHHH
T ss_conf 9999999998599899997889888999999999999999999983---9966864421004579988999999999999
Q ss_pred HHHHHHHCCCCCCCEECCCCCCCCHHHHH----HHHHHHHHHH
Q ss_conf 75343210244320012343343178899----9999987530
Q gi|254780276|r 88 LAQYAHSIGADALLVVIPYYNKPNRRGLL----AHFGEIATTV 126 (292)
Q Consensus 88 ~a~~a~~~Gad~i~v~~P~~~~~~~~~i~----~~~~~i~~~~ 126 (292)
-.+.|+.+|++++.+.|=++...+.++-+ +...++.+.+
T Consensus 89 el~~~~~lG~~~vV~HpGs~~~~~~e~~i~~i~~~l~~vl~~~ 131 (273)
T smart00518 89 EIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDET 131 (273)
T ss_pred HHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9999998099858734531358888999999999999998236
No 349
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=74.62 E-value=6.9 Score=19.80 Aligned_cols=110 Identities=18% Similarity=0.278 Sum_probs=51.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-----CCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----
Q ss_conf 2017738988868999999999999769989998-----6723250108999999986543110123443003674----
Q gi|254780276|r 8 ALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVP-----AGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG---- 78 (292)
Q Consensus 8 ~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~-----~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~---- 78 (292)
.-+||+++.+ +++++++.+ +.+-|.+ -|..|....-....+..+.+..... ...+|++.-+.
T Consensus 4 gy~tpwn~~s---~~s~~~~~~-----kl~~isP~W~~l~~~~g~l~~~~d~~~~~~~~~~~~~-~~v~~lv~n~~~~~~ 74 (298)
T cd06549 4 AFYTPWDDAS---FASLKRHAP-----RLDWLVPEWLNLTGPEGRIDVFVDPQGVAIIAAAKAH-PKVLPLVQNISGGAW 74 (298)
T ss_pred EEECCCCHHH---HHHHHHHHC-----CCCEEEEEEEEEECCCCCEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCC
T ss_conf 9989985757---999999758-----7989967789998389957504680168999998717-952689851467789
Q ss_pred ------------CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ------------102789999753432102443200123433431788999999987530
Q gi|254780276|r 79 ------------SNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV 126 (292)
Q Consensus 79 ------------~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~ 126 (292)
....+-+-.++..+++.|+||+-+--........+....|.++++++.
T Consensus 75 ~~~~~~~lL~d~~~R~~~i~~i~~~~~~~~~dGi~iD~E~~~~~d~~~~~~fv~eL~~~l 134 (298)
T cd06549 75 DGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELPADDLPKYVAFLSELRRRL 134 (298)
T ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 878999983799999999999999999829983999867899899999999999999998
No 350
>PRK01659 consensus
Probab=74.55 E-value=7.3 Score=19.63 Aligned_cols=174 Identities=14% Similarity=0.133 Sum_probs=84.8
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++.+.+.|++.+.+.--.|-. -....-.++++...+.+ .+|+-+|=|=-+.++ ++.+-++|||-|.+-
T Consensus 32 P~~~ak~~~~~Gad~ihivDld~a~--~g~~~n~~~I~~i~~~~--~ipi~vGGGIrs~e~----~~~~l~~GadkViig 103 (252)
T PRK01659 32 PVEIAAAYNEAGADELVFLDITATH--EGRKTMVDVVEKVAAKV--FIPLTVGGGISSVKD----MKRLLRAGADKVSIN 103 (252)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHC--CCCEEEECCEECHHH----HHHHHHCCCCEEEEC
T ss_conf 9999999998799999999467665--68864899999999756--974799633200688----889874488559831
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH---HCCCC---------EEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------CC-
Q ss_conf 2343343178899999998753---02330---------12100111112111068999743203023310------01-
Q gi|254780276|r 104 IPYYNKPNRRGLLAHFGEIATT---VSSPI---------YIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------DA- 164 (292)
Q Consensus 104 ~P~~~~~~~~~i~~~~~~i~~~---~~~pi---------~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------~~- 164 (292)
...+..+ +-+.+..+..-+. +.+++ .+|..-.+....+++..+.+-..+.+ +-.+- |.
T Consensus 104 s~a~~n~--~~i~~~~~~~G~q~IvvsiD~k~~~~~~~~~i~~~g~~~~~~~~~~~~i~~~~~~g-~geil~tdI~rDG~ 180 (252)
T PRK01659 104 SAAVLRP--ELITEGADHFGSQCIVVAIDAKYDAEAGKWNVYTHGGRVDTGLDAIAWAKEAVRLG-AGEILLTSMDADGT 180 (252)
T ss_pred HHHHHCH--HHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCC-CCEEEEEEECCCCC
T ss_conf 7775291--53214676468632699999897056886899968995767777999999999769-97799998814585
Q ss_pred --CCCHHHHHHHHHHCCCCEEECCCCC--CCHHHHHHHC-CCCCCCCCC
Q ss_conf --2211358999973598403201322--1001243203-344552222
Q gi|254780276|r 165 --TGKIELVSEQRLSCGFDFIQLSGED--SSALGFNAHG-GVGCISVTA 208 (292)
Q Consensus 165 --~~~~~~~~~~~~~~~~~~~v~~G~~--~~~~~~~~~G-~~G~is~~~ 208 (292)
..|.+.+..+.+..+-++....|.. ..+...+..+ .+|.+.+..
T Consensus 181 ~~G~dl~l~~~i~~~~~~PiIasGGi~~~~di~~l~~~~~v~gv~~g~~ 229 (252)
T PRK01659 181 KNGFDLRLTKAISEAVSVPVIASGGAGNADHMVEVFQKTTADAALAASI 229 (252)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEHHH
T ss_conf 4768989999999868999999917999999999997489826557547
No 351
>pfam01255 Prenyltransf Putative undecaprenyl diphosphate synthase. Previously known as uncharacterized protein family UPF0015, a single member of this family has been identified as an undecaprenyl diphosphate synthase.
Probab=74.54 E-value=7.3 Score=19.63 Aligned_cols=103 Identities=19% Similarity=0.174 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC--------CCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999997699899986723250108999999986543110123--------4430-036741027899997534
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS--------RVPV-MAGIGSNNTRESVELAQY 91 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~--------r~pi-i~gv~~~~~~~~i~~a~~ 91 (292)
.+.++..++|+.+.||.-+.+.+.+.|.+.=+.+|-..+++...+.... ++.+ +.|--+.=..+..+.++.
T Consensus 24 ~~~~~~i~~~c~~~gI~~lTvyaFStEN~~R~~~Ev~~L~~l~~~~l~~~~~~~~~~~iki~~iG~~~~Lp~~l~~~i~~ 103 (222)
T pfam01255 24 AEALREILEWCLELGIKYLTLYAFSTENWKRPKEEVDFLMELLEEKLRRLLEDLHKNGVRVRVIGDLSLLPEDLRKAIED 103 (222)
T ss_pred HHHHHHHHHHHHHCCCCEEEEHHHCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 99999999999986999897264178754999899999999999999999999998693899952655689899999999
Q ss_pred HHHCC--CCCCCE-ECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 32102--443200-12343343178899999998753
Q gi|254780276|r 92 AHSIG--ADALLV-VIPYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 92 a~~~G--ad~i~v-~~P~~~~~~~~~i~~~~~~i~~~ 125 (292)
+++.- -+++.+ +.=.| .+.+||.+-++.+++.
T Consensus 104 ~e~~T~~n~~~~lnia~~Y--ggr~EI~~Av~~i~~~ 138 (222)
T pfam01255 104 AEEATKNNTGLTLNIALNY--GGRDEIVDAVKRLAED 138 (222)
T ss_pred HHHHHCCCCCEEEEEEECC--CCHHHHHHHHHHHHHH
T ss_conf 9997157885499998537--9779999999999999
No 352
>cd07897 Adenylation_DNA_ligase_Bac1 The Adenylation domain of putative bacterial ATP-dependent DNA ligases is inferred by similarity to be a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenyl
Probab=74.48 E-value=6.6 Score=19.93 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=9.6
Q ss_pred CCEEEECHHHCCCCCC
Q ss_conf 3012100111112111
Q gi|254780276|r 129 PIYIYNNPSRTVIEMD 144 (292)
Q Consensus 129 pi~iYn~P~~~g~~~~ 144 (292)
-+++|+.....|.++.
T Consensus 115 ~~~vFDiL~l~g~~l~ 130 (208)
T cd07897 115 AFRAYDLLELNGEDLR 130 (208)
T ss_pred EEEEEEEEEECCCCCC
T ss_conf 9999875303797201
No 353
>PRK10812 putative metallodependent hydrolase; Provisional
Probab=74.44 E-value=7.3 Score=19.61 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH---HHHHHHHHHHHCCCCC
Q ss_conf 9999999999769989998672325010899999998654311012344300367410278---9999753432102443
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTR---ESVELAQYAHSIGADA 99 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~---~~i~~a~~a~~~Gad~ 99 (292)
.+...++...++||+.+.+.|+. .+...++.+.+.+. +.+..-+|+--.+.. +.-++.+.+++..+-|
T Consensus 21 d~~~vl~~a~~~gV~~~i~~g~~-------~~~~~~~~~l~~~~--~~i~~a~GiHP~~~~~~~~~~~l~~l~~~~~vvA 91 (265)
T PRK10812 21 DVDDVLAKAAARDVKFCLAVATT-------LPGYLHMRDLVGER--DNVVFSCGVHPLNQDEPYDVEDLRRLAAEEGVVA 91 (265)
T ss_pred CHHHHHHHHHHCCCCEEEEECCC-------HHHHHHHHHHHHHC--CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 99999999998699889995399-------89999999998539--9817995048576686310999999851899389
Q ss_pred C-CEECCCCCCCC----HHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHH
Q ss_conf 2-00123433431----788999999987530233012100111112111068999743203023310012211358999
Q gi|254780276|r 100 L-LVVIPYYNKPN----RRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQ 174 (292)
Q Consensus 100 i-~v~~P~~~~~~----~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~ 174 (292)
| -+...||+..+ |.+++.-.-++|...++|++++. +. =..+++ ++.++.. .+.
T Consensus 92 IGEiGLDy~~~~~~~~~Q~~~F~~ql~lA~~~~lPviiH~---R~---A~~d~~-~iLk~~~----~~~----------- 149 (265)
T PRK10812 92 MGETGLDYFYTPETKVRQQASFIHHIQIGRELNKPVIVHT---RD---ARADTL-AILREEK----VTD----------- 149 (265)
T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEE---CC---CHHHHH-HHHHHHC----CCC-----------
T ss_conf 8505799999998799999999999999997479869985---54---348999-9999824----777-----------
Q ss_pred HHHCCCCEEECCCCCCCHHHHHHHCC
Q ss_conf 97359840320132210012432033
Q gi|254780276|r 175 RLSCGFDFIQLSGEDSSALGFNAHGG 200 (292)
Q Consensus 175 ~~~~~~~~~v~~G~~~~~~~~~~~G~ 200 (292)
.+.-+..|+|+.+.+-..+.+|+
T Consensus 150 ---~~gv~HcFsGs~e~a~~~l~lG~ 172 (265)
T PRK10812 150 ---CGGVLHCFTEDRETAGKLLDLGF 172 (265)
T ss_pred ---CCEEEECCCCCHHHHHHHHHCCC
T ss_conf ---67277607899999999996499
No 354
>KOG2334 consensus
Probab=74.44 E-value=7.3 Score=19.61 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHCCCCEEEECC----------CCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHH
Q ss_conf 9999999999976998999867----------2325010899999998654311012344300367-4102789999753
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAG----------TTGESSTLSHEEHCRIIELCVKTVASRVPVMAGI-GSNNTRESVELAQ 90 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G----------~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~ 90 (292)
.++.--+-.++++.|.|+-++- .+|-...-+.+--..++...++.+ ++|+---+ .-.+.++++++.+
T Consensus 93 a~lA~e~A~lv~nDvsgidiN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~--~vpvtckIR~L~s~edtL~lv~ 170 (477)
T KOG2334 93 AELALEAAKLVDNDVSGIDINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGN--KVPVTCKIRLLDSKEDTLKLVK 170 (477)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCC--CCCCEEEEEECCCCCCHHHHHH
T ss_conf 88999999976224445300379997542134778501068888999999998457--6651468984478420799999
Q ss_pred HHHHCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHC-CCCE
Q ss_conf 43210244320012343-34317889999999875302-3301
Q gi|254780276|r 91 YAHSIGADALLVVIPYY-NKPNRRGLLAHFGEIATTVS-SPIY 131 (292)
Q Consensus 91 ~a~~~Gad~i~v~~P~~-~~~~~~~i~~~~~~i~~~~~-~pi~ 131 (292)
...+.|..++-+..--. -++.+.-..+|+++|+.+++ +||+
T Consensus 171 ri~~tgi~ai~vh~rt~d~r~~~~~~~~~i~~i~~~~~~V~vi 213 (477)
T KOG2334 171 RICATGIAAITVHCRTRDERNQEPATKDYIREIAQACQMVPVI 213 (477)
T ss_pred HHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCEEE
T ss_conf 9996287569998642666777889779999999871663376
No 355
>cd07906 Adenylation_DNA_ligase_LigD The Adenylation domain of Mycobacterium tuberculosis LigD-like ATP-dependent DNA ligases is a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold dom
Probab=74.25 E-value=7.4 Score=19.58 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=10.1
Q ss_pred CCCCEEEECHHHCCCCC
Q ss_conf 23301210011111211
Q gi|254780276|r 127 SSPIYIYNNPSRTVIEM 143 (292)
Q Consensus 127 ~~pi~iYn~P~~~g~~~ 143 (292)
++-.++|+.....|.++
T Consensus 98 ~v~~~vFDiL~l~g~~l 114 (186)
T cd07906 98 PVVYYAFDLLYLDGEDL 114 (186)
T ss_pred CEEEEEEEEEEECCCCH
T ss_conf 74999996002887150
No 356
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=74.12 E-value=7.5 Score=19.55 Aligned_cols=112 Identities=14% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHH----HCCCCCCCEE--------CCCCCC-CCHHHHHHHHHHHHHHHCCCCEE--EE-
Q ss_conf 30036741-02789999753432----1024432001--------234334-31788999999987530233012--10-
Q gi|254780276|r 72 PVMAGIGS-NNTRESVELAQYAH----SIGADALLVV--------IPYYNK-PNRRGLLAHFGEIATTVSSPIYI--YN- 134 (292)
Q Consensus 72 pii~gv~~-~~~~~~i~~a~~a~----~~Gad~i~v~--------~P~~~~-~~~~~i~~~~~~i~~~~~~pi~i--Yn- 134 (292)
-+|+|... .|-+.+++.|++.+ +.|...+.=. .||.|+ +.-++=.++++++.+..++|++= .+
T Consensus 18 ~~iaGPC~vEs~e~~~~iA~~l~~~~~~~~~~~ifK~sfdkaNRTS~~sfqG~G~eegL~~L~~ik~~~gl~viTeVh~~ 97 (281)
T PRK12457 18 VLFGGINVLESLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEV 97 (281)
T ss_pred EEEECCCHHHCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCH
T ss_conf 89916646659999999999999999972998784377887768999777898889999999999998799679985888
Q ss_pred --------------CHHHCCCCCCHHHHHHHHHHCCHHHHHHCC----CCCHHHHHHHHHHCCCCEEECC
Q ss_conf --------------011111211106899974320302331001----2211358999973598403201
Q gi|254780276|r 135 --------------NPSRTVIEMDVDTMAELAATYPNIVGVKDA----TGKIELVSEQRLSCGFDFIQLS 186 (292)
Q Consensus 135 --------------~P~~~g~~~~~~~l~~L~~~~pni~giK~~----~~~~~~~~~~~~~~~~~~~v~~ 186 (292)
+|.+. --..+++..++ +....+-+|-. ..++....+.+...+.+-.+++
T Consensus 98 ~q~~~v~e~vDilQIpAr~--~rqtdLL~a~~-~t~kpV~lKkGq~~s~~e~~~aaeki~s~Gn~~vilc 164 (281)
T PRK12457 98 EQAAPVAEVADVLQVPAFL--ARQTDLVVAIA-KTGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILC 164 (281)
T ss_pred HHHHHHHHHHHHEEECHHH--CCCCHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 8999998650212344375--02818999999-7399279558776999999999999997599849998
No 357
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=74.06 E-value=6.1 Score=20.22 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCH-------HHHHHHHHHCCHHHHHHC
Q ss_conf 889999999875302330121001111121110-------689997432030233100
Q gi|254780276|r 113 RGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDV-------DTMAELAATYPNIVGVKD 163 (292)
Q Consensus 113 ~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~-------~~l~~L~~~~pni~giK~ 163 (292)
..+.++|+.++..-++|+++-|+|......++. +.+.++.+.++.+.|-|.
T Consensus 122 ~t~~KWye~~are~~IPlf~iDip~~~~~e~~~~~i~Yv~~Q~~d~I~~LEkiTGkKf 179 (430)
T TIGR03191 122 CSHAKWYQHVAKEEKIPDFYLDVGVGAYKDLTDARLDYVANQLHDGIEFVEKASGRKC 179 (430)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0389999999997199969982687888877989999999999999999999848989
No 358
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=74.02 E-value=7.5 Score=19.54 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=10.8
Q ss_pred CCCCCHHHHHHHHHHHHH-CCCCEE
Q ss_conf 888689999999999997-699899
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQIT-EGSGGL 39 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~-~gv~gi 39 (292)
|..-|.+.-.+..+.|++ .||..|
T Consensus 47 D~~~~p~~a~~~a~~Lv~~~~V~av 71 (312)
T cd06346 47 DTQTDPAAGVAAATKLVNVDGVPGI 71 (312)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 5999989999999987640880697
No 359
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=73.95 E-value=7.5 Score=19.53 Aligned_cols=170 Identities=16% Similarity=0.169 Sum_probs=89.5
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11201773898886899999999999976998999867232501089999999865431101234430036741027899
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRES 85 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~ 85 (292)
+|.+..|+|-=.+. +....+-..|-=|+. - -.++.+|+.+.++.+. ++.. ++++-.-..+.
T Consensus 35 iPIissnMDtV~~~------~mA~~la~~Gglgvl--h-----r~~~~e~~~~~v~~vk----~~~~--v~aaig~~~~~ 95 (325)
T cd00381 35 IPLVSAPMDTVTES------EMAIAMARLGGIGVI--H-----RNMSIEEQAEEVRKVK----GRLL--VGAAVGTREDD 95 (325)
T ss_pred CCEEECCCCCCCCH------HHHHHHHHCCCEEEE--E-----CCCCHHHHHHHHHHHH----CCEE--EEEEECCCHHH
T ss_conf 98886788875889------999999977996899--4-----3588899999999750----4769--99997668628
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf 99753432102443200123433431788999999987530-23301210011111211106899974320302331001
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
.++++...+.|+|.+.+-... ...+...++.+.|-+.. ++||+.=| .-+.+..+.|.+ . ..-++|-.
T Consensus 96 ~~r~~~l~~ag~d~i~IDvAh---G~~~~~~~~ik~ir~~~p~~~IiaGN-------V~T~e~a~~L~~-~-GaD~vkVG 163 (325)
T cd00381 96 KERAEALVEAGVDVIVIDSAH---GHSVYVIEMIKFIKKKYPNVDVIAGN-------VVTAEAARDLID-A-GADGVKVG 163 (325)
T ss_pred HHHHHHHHHCCCCEEEEECHH---CCCHHHHHHHHHHHHHCCCCCEEECC-------CCCHHHHHHHHH-C-CCCEEEEC
T ss_conf 999999997699899987000---34588999999999768997568645-------668999999986-6-99899975
Q ss_pred --CCCH--------------HHHHHHH---HHCCCCEEECCC---CCCCHHHHHHHCCCCCCCCC
Q ss_conf --2211--------------3589999---735984032013---22100124320334455222
Q gi|254780276|r 165 --TGKI--------------ELVSEQR---LSCGFDFIQLSG---EDSSALGFNAHGGVGCISVT 207 (292)
Q Consensus 165 --~~~~--------------~~~~~~~---~~~~~~~~v~~G---~~~~~~~~~~~G~~G~is~~ 207 (292)
+|+. ..+.+.. +..+-+ .+-.| ....+.-++..|++.++.|.
T Consensus 164 iG~GS~CtTr~~tGvG~Pq~sai~~~a~~~~~~~v~-iiaDGGi~~~Gdi~KAla~GAd~VMlG~ 227 (325)
T cd00381 164 IGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVP-VIADGGIRTSGDIVKALAAGADAVMLGS 227 (325)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC-EEECCCCCCHHHHHHHHHCCCCEEEECC
T ss_conf 757777666010178874588999999976344985-8944873310788888752887898462
No 360
>PRK07695 transcriptional regulator TenI; Provisional
Probab=73.92 E-value=7.5 Score=19.52 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
...+.+ ..++-.++.|++-+-+=- -.+|..|..++.+...+......++|+. +....|...|+|
T Consensus 12 ~~~~~~-~~v~~al~~Gv~~iQlR~-----K~~s~~e~~~~~~~l~~~~~~~~~lIIN----------D~~dlA~~~~ad 75 (202)
T PRK07695 12 MSFEEL-VAVAMQIESEVDYIHIRE-----REKSAKELYEGVESLLKKGVPASKLIIN----------DRVDIALLLNIH 75 (202)
T ss_pred CCHHHH-HHHHHHHHCCCCEEEECC-----CCCCHHHHHHHHHHHHHHCCCCCEEEEE----------CCHHHHHHCCCC
T ss_conf 997899-999999987999999889-----9979999999999999848999989997----------919999884999
Q ss_pred CCCEE
Q ss_conf 32001
Q gi|254780276|r 99 ALLVV 103 (292)
Q Consensus 99 ~i~v~ 103 (292)
||-+.
T Consensus 76 GVHLG 80 (202)
T PRK07695 76 RVQLG 80 (202)
T ss_pred EEEEC
T ss_conf 89218
No 361
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=73.82 E-value=7.6 Score=19.50 Aligned_cols=58 Identities=17% Similarity=0.258 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC-CCCC-----CCCHHHHHHHHHHHHHHHC-CCCEEE
Q ss_conf 44300367410278999975343210244320012-3433-----4317889999999875302-330121
Q gi|254780276|r 70 RVPVMAGIGSNNTRESVELAQYAHSIGADALLVVI-PYYN-----KPNRRGLLAHFGEIATTVS-SPIYIY 133 (292)
Q Consensus 70 r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~-P~~~-----~~~~~~i~~~~~~i~~~~~-~pi~iY 133 (292)
++.+.+.++.. +.++.+.+.|++||=+.- -+.| .|++++.++.|++++++.+ .|+++=
T Consensus 268 ~i~l~aNi~~~------~d~~~~~~~ga~GIGL~RTEflfl~~~~~P~eeeQ~~~Y~~i~~~~~~~pV~iR 332 (575)
T PRK11177 268 QVEVCANIGTV------RDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFQAYKAVAEAMGSQAVIVR 332 (575)
T ss_pred EEEEEECCCCH------HHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 58998547885------779999865987543344012014655586379999999999986678847998
No 362
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.75 E-value=7.6 Score=19.49 Aligned_cols=136 Identities=15% Similarity=0.120 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHCCCCEEEEC-CCCCCHHC---CCHHHHHHHHHHHHHCCCCCCCCCC---------CCCCC-----HHHH
Q ss_conf 99999999997699899986-72325010---8999999986543110123443003---------67410-----2789
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPA-GTTGESST---LSHEEHCRIIELCVKTVASRVPVMA---------GIGSN-----NTRE 84 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~-G~tGE~~~---Ls~~Er~~~~~~~~~~~~~r~pii~---------gv~~~-----~~~~ 84 (292)
+.+.-++..-+.|-++|=+. -.+.|... .|.+||.++-+...++ +=+++-+. |-.+. +.+-
T Consensus 22 sw~e~~~~ak~~Gfd~iElsiDe~d~~~~rL~w~~~~~~~ir~~~~~~-gi~i~s~cls~~~~~Pl~S~D~~~R~~~~e~ 100 (283)
T PRK13209 22 CWLEKLRIAKTAGFDFVEMSVDETDERLARLDWSREQRLALVNALVET-GFRVNSMCLSAHRRFPLGSEDDAVRAQGLEI 100 (283)
T ss_pred CHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999999985998799842685310035899999999999999981-9986033054555799999799999999999
Q ss_pred HHHHHHHHHHCCCCCCCEECC-CCCCCCHHHHHHH----HHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHC--C
Q ss_conf 999753432102443200123-4334317889999----99987530-23301210011111211106899974320--3
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIP-YYNKPNRRGLLAH----FGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATY--P 156 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P-~~~~~~~~~i~~~----~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~--p 156 (292)
..+....|+++|+..|++.+- .|+..+.++-.++ .+++++.+ ...|.+-=-|..+.+.-+++...++++.+ |
T Consensus 101 ~~kaI~lA~~LGi~~I~lag~dv~~~~~~~e~~~~f~e~L~~~~~~A~~~gV~L~iE~~~~~f~~t~~~~~~~i~~v~sP 180 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAGYDVYYEEANNETRRRFIDGLKESVEMASRYSVTLAFEIMDTPFMGSISKALGYAHYLNSP 180 (283)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHCCHHHHHHHHHHCCCC
T ss_conf 99999999980999899688766788785999999999999999999985998999425534321599999999966997
Q ss_pred HHH
Q ss_conf 023
Q gi|254780276|r 157 NIV 159 (292)
Q Consensus 157 ni~ 159 (292)
++.
T Consensus 181 ~l~ 183 (283)
T PRK13209 181 WFQ 183 (283)
T ss_pred CEE
T ss_conf 289
No 363
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=73.19 E-value=7.8 Score=19.40 Aligned_cols=104 Identities=17% Similarity=0.217 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC--------CCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999997699899986723250108999999986543110123--------4430-036741027899997534
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS--------RVPV-MAGIGSNNTRESVELAQY 91 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~--------r~pi-i~gv~~~~~~~~i~~a~~ 91 (292)
.+.++..++++.+.||.-+.+.+...|.+.=+.+|-..+++...+.... .+.| ++|--..=..+..+..+.
T Consensus 23 ~~~l~~iv~~~~~~gI~~lTlyaFStENw~R~~~EV~~Lm~L~~~~l~~~~~~l~~~~iri~~iGd~~~Lp~~l~~~i~~ 102 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRK 102 (229)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 99999999999986999899996087664999799999999999999999999998794899964410067589999999
Q ss_pred HHHCC--CCCC-CEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 32102--4432-00123433431788999999987530
Q gi|254780276|r 92 AHSIG--ADAL-LVVIPYYNKPNRRGLLAHFGEIATTV 126 (292)
Q Consensus 92 a~~~G--ad~i-~v~~P~~~~~~~~~i~~~~~~i~~~~ 126 (292)
+++.. .+++ +.+.-.| .+.+||++=++.+++.+
T Consensus 103 ~e~~T~~n~~~~Lnia~~Y--ggr~EI~~A~~~i~~~~ 138 (229)
T PRK10240 103 SEALTAGNTGLTLNIAANY--GGRWDIVQGVRQLAEKV 138 (229)
T ss_pred HHHHHCCCCCEEEEEEECC--CCHHHHHHHHHHHHHHH
T ss_conf 9997455886289997378--87799999999999999
No 364
>PRK07807 inositol-5-monophosphate dehydrogenase; Validated
Probab=73.08 E-value=7.9 Score=19.38 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEE
Q ss_conf 78999975343210244320012343343178899999998753-023301210
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT-VSSPIYIYN 134 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~-~~~pi~iYn 134 (292)
..+..++++..-++|+|.+.+-... .....+.+..+.|-.. .+++|+.=|
T Consensus 225 ~~d~~eR~~aLv~AGvDvlvIDtAH---GhS~~vi~~vk~iK~~~p~~~viaGN 275 (479)
T PRK07807 225 NGDVAAKARALLEAGVDVLVIDTAH---GHQEKMLEAIRAVRALDPGVPLVAGN 275 (479)
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCC---CCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 8458999999997699899975457---66489999999998408988578743
No 365
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=72.80 E-value=8 Score=19.34 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 4102789999753432102443200123433431788999999987530233012100
Q gi|254780276|r 78 GSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNN 135 (292)
Q Consensus 78 ~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~ 135 (292)
+..+.++..+..+.....++||+.+.+.. .+++.. ++.+ ...++|+++.+.
T Consensus 102 ~~~~~~~~~~~~~~l~~~~vdgiIi~~~~---~~~~~~---~~~~-~~~~iP~V~~~~ 152 (342)
T PRK10014 102 GGKDGEQLAQRFSTLLNQGVDGVVIAGAA---GSSDDL---RRMA-EEKAIPVVFASR 152 (342)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCC---CCCHHH---HHHH-HHCCCCEEEECC
T ss_conf 79998999999998762398889995787---788899---9999-855997999568
No 366
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=72.66 E-value=8.1 Score=19.32 Aligned_cols=97 Identities=21% Similarity=0.235 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCC-----------CCCCCCCHHHHHHHH
Q ss_conf 899999999999976998999867232501089999999865431101234430-----------036741027899997
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPV-----------MAGIGSNNTRESVEL 88 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pi-----------i~gv~~~~~~~~i~~ 88 (292)
|.+.-++.++.+.+.+|+|+.+.++.. +.+....+.+. ++|+ +..|...+-.-+...
T Consensus 40 d~~~e~~~i~~l~~~~vdGiIi~~~~~-----~~~~~~~~~~~-------~iPvV~idr~~~~~~~~~V~~Dn~~~~~~a 107 (264)
T cd06274 40 DPETERETVETLIARQVDALIVAGSLP-----PDDPYYLCQKA-------GLPVVALDRPGDPSRFPSVVSDNRDGAAEL 107 (264)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC-----CHHHHHHHHHC-------CCCEEEEECCCCCCCCCEEEECHHHHHHHH
T ss_conf 989999999999966998799767889-----87999999975-------998899850589899978997669999999
Q ss_pred HHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 5343210244320012-3433431788999999987530233
Q gi|254780276|r 89 AQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 89 a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
++|.-+.|..-+..+. +.-...+.+- ++-|++.....+++
T Consensus 108 ~~~L~~~Ghr~I~~i~~~~~~~~~~~R-~~Gf~~al~~~g~~ 148 (264)
T cd06274 108 TRELLAAPPEEVLFLGGLPELSPSRER-LAGFRQALADAGLP 148 (264)
T ss_pred HHHHHHCCCCEEEEECCCCCCCCHHHH-HHHHHHHHHHCCCC
T ss_conf 999998599669997689877309999-99999999977998
No 367
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=72.54 E-value=8.1 Score=19.30 Aligned_cols=28 Identities=14% Similarity=0.170 Sum_probs=19.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 8868999999999999769989998672
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGT 44 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~ 44 (292)
.+-|.+...+.++.++..|++||.+.-.
T Consensus 38 ~~~d~~~Q~~~i~~li~~~vDgIii~p~ 65 (272)
T cd06301 38 AKNDVATQLSQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999999999999859999999558
No 368
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=72.28 E-value=8.2 Score=19.26 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 27899997534321024432
Q gi|254780276|r 81 NTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i 100 (292)
+.+..++..+...+.|.+.+
T Consensus 31 ~~~~i~~ei~~~~~~~~~~~ 50 (216)
T smart00729 31 YLEALVREIELLAEKGEKEI 50 (216)
T ss_pred CHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999997089765
No 369
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.02 E-value=8.3 Score=19.21 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHH---HHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHH
Q ss_conf 7899997534321024432001234334317889999---9998753023301210011111211106899974320302
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAH---FGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNI 158 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~---~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni 158 (292)
-++-++..+.|-+.|++.|+.-- ...++.+.++. .+++|..-+.|+++=+.+. +-..+ +-+
T Consensus 154 ~~~l~~~Ve~AL~gGv~ivQlR~---K~~~~~~~l~~A~~l~~Lc~~y~a~fIINDrvD---------lAlav--~AD-- 217 (345)
T PRK02615 154 SEDLLEVVEAALKAGVKLVQYRD---KTGDDRERLEEAKQLKELCKRYGALFIVNDRVD---------IALAV--DAD-- 217 (345)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEC---CCCCHHHHHHHHHHHHHHHHHHCCEEEEECCHH---------HHHHC--CCC--
T ss_conf 63499999999975998898305---899999999999999999999599489819699---------99974--998--
Q ss_pred HHHHCCCCCHHHHHHHHHHCCCCEEE-CCCC-CCCHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 33100122113589999735984032-0132-21001243203344552222321100244
Q gi|254780276|r 159 VGVKDATGKIELVSEQRLSCGFDFIQ-LSGE-DSSALGFNAHGGVGCISVTANVVPRICAE 217 (292)
Q Consensus 159 ~giK~~~~~~~~~~~~~~~~~~~~~v-~~G~-~~~~~~~~~~G~~G~is~~~n~~P~~~~~ 217 (292)
|+--+-.|+ -+...++..+++..+ .+.+ ...+......|++ ..++|.+||.....
T Consensus 218 -GVHLGQ~Dl-pi~~aR~llG~~~iIG~S~h~~ee~~~A~~~gaD--Yig~Gpvf~T~TK~ 274 (345)
T PRK02615 218 -GVHLGQEDL-PLAVARQLLGPEKIIGRSTTNPEELAKAIAEGAD--YIGVGPVFPTPTKP 274 (345)
T ss_pred -EEEECCCCC-CHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCC--EEEECCEEECCCCC
T ss_conf -775588878-9999998739991899617999999999863999--79988774258888
No 370
>pfam01188 MR_MLE Mandelate racemase / muconate lactonizing enzyme, C-terminal domain. C-terminal domain is TIM barrel fold, dehydratase-like domain. Manganese is associated with this domain.
Probab=71.94 E-value=8.3 Score=19.20 Aligned_cols=96 Identities=10% Similarity=0.151 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999976998999867232501089999999865431101234430036-741027899997534321024432
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAG-IGSNNTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i 100 (292)
+.+...++.+++.|.+.+=+-- | .-+.++-.+.++.+.+.+++.+.+++- -++.+..+++++++..++.|..++
T Consensus 2 e~~~~~a~~~~~~Gf~~~Kik~--g---~~~~~~d~~~i~~ir~~~g~~~~l~vD~n~~~~~~~A~~~~~~l~~~~~~~~ 76 (98)
T pfam01188 2 EELAAEAEEAVEAGFRAFKLKI--G---RGDLADDLARVAAVREAVGDDVRLRVDANQAWDVATAIRLARALEELGLTWI 76 (98)
T ss_pred HHHHHHHHHHHHCCCCEEEEEE--C---CCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 8999999999987998799744--8---9999999999999999759998798758654379999999987325795699
Q ss_pred CEECCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 00123433431788999999987530233
Q gi|254780276|r 101 LVVIPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 101 ~v~~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
=-|. .+. . .+-+++|.+.+++|
T Consensus 77 --EeP~--~~~--d-~~~~~~l~~~~~iP 98 (98)
T pfam01188 77 --EEPL--PAD--D-IEGLARLRRALDIP 98 (98)
T ss_pred --ECCC--CCC--C-HHHHHHHHHHCCCC
T ss_conf --7989--999--9-99999999857899
No 371
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=71.50 E-value=5 Score=20.81 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHH-----------------H--------HHHHHHHHHHHHC
Q ss_conf 00367410278999975343210244320012343343178-----------------8--------9999999875302
Q gi|254780276|r 73 VMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRR-----------------G--------LLAHFGEIATTVS 127 (292)
Q Consensus 73 ii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~-----------------~--------i~~~~~~i~~~~~ 127 (292)
|++..|+ .+++..+...-+-| |.|++..|+|....+- + --.|+..+.+...
T Consensus 98 I~vt~Ga---~~~l~~l~a~l~pG-D~Vii~~P~y~~Y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~k 173 (402)
T TIGR03542 98 IFISDGA---KCDIGRLQSIFGSD-NTVAVQDPVYPAYVDTAVMTGRAGFADDTGQYRGIVYLPCTKENGFIPELPEERK 173 (402)
T ss_pred EEECCCC---HHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCEEECCCCHHHCCCCCCCCCCC
T ss_conf 6777782---99999999983999-9899838888157999998599530135665567256767624385722234557
Q ss_pred CCCEEEECHHH-CCCCCCHHHHHHHHH
Q ss_conf 33012100111-112111068999743
Q gi|254780276|r 128 SPIYIYNNPSR-TVIEMDVDTMAELAA 153 (292)
Q Consensus 128 ~pi~iYn~P~~-~g~~~~~~~l~~L~~ 153 (292)
.-+++-|+|.. ||..++.+.+.+|++
T Consensus 174 tk~iiln~P~NPTG~v~s~eel~~i~~ 200 (402)
T TIGR03542 174 IDIIYLCSPNNPTGTVLTKEQLKELVD 200 (402)
T ss_pred CEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 359998999798875689999999999
No 372
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=71.50 E-value=8.5 Score=19.13 Aligned_cols=177 Identities=18% Similarity=0.264 Sum_probs=87.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 77389888689999999999997699899986723250108999999986543110123443003674102789999753
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQ 90 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~ 90 (292)
|-.|.|-.++.+ .+..+++|.|.|+++||++ ++.+.-.++++.+.+ . .+|++.=.++.+. +
T Consensus 12 ~liDPdK~~~~~-----~~~~~~sgtDaI~VGGS~~----vt~~~~~~~~~~ik~-~--~lPviLfPg~~~~---v---- 72 (229)
T PRK04169 12 TLLDPDKELPDE-----DLAICESGTDAIMIGGSDG----VTEENVDELVSRIKR-Y--DLPVILFPGNVEG---I---- 72 (229)
T ss_pred EEECCCCCCCHH-----HHHHHHCCCCEEEECCCCC----CCHHHHHHHHHHHHH-C--CCCEEEECCCHHH---C----
T ss_conf 987889999379-----9999862999999888665----686999999999861-3--9898994598877---4----
Q ss_pred HHHHCCCCCCCEEC------CCCCCCCHHHHHHHHHHHH---HHHCCCCEEEECHHH-----CCCC---CCHHHHHHHHH
Q ss_conf 43210244320012------3433431788999999987---530233012100111-----1121---11068999743
Q gi|254780276|r 91 YAHSIGADALLVVI------PYYNKPNRRGLLAHFGEIA---TTVSSPIYIYNNPSR-----TVIE---MDVDTMAELAA 153 (292)
Q Consensus 91 ~a~~~Gad~i~v~~------P~~~~~~~~~i~~~~~~i~---~~~~~pi~iYn~P~~-----~g~~---~~~~~l~~L~~ 153 (292)
.-+||+++++. |+|.-..+-+-...++... +..+..-++-| |.. ++.. ++.+.+..-..
T Consensus 73 ---s~~aDa~lf~sllns~np~~lig~~~~aa~~~~~~~~~~E~ip~gYiv~~-~g~~v~~vs~a~pi~~~~~~i~a~~a 148 (229)
T PRK04169 73 ---SPGADAYLFPSVLNSRDPYWIIGAQVEAAKEYGDIIDWLEVIPEGYIVLN-PGSAVAFVTEAKPIPLDKPDIAAYAA 148 (229)
T ss_pred ---CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEC-CCCCEEEECCCCCCCCCCHHHHHHHH
T ss_conf ---85778688676534899136678999899875103676435445899987-99600200077338999699999999
Q ss_pred HCCHHHHHH-----CCCC--CH---HHHHHHHHHCCCCEEECCC-CC--CCHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 203023310-----0122--11---3589999735984032013-22--10012432033445522223211
Q gi|254780276|r 154 TYPNIVGVK-----DATG--KI---ELVSEQRLSCGFDFIQLSG-ED--SSALGFNAHGGVGCISVTANVVP 212 (292)
Q Consensus 154 ~~pni~giK-----~~~~--~~---~~~~~~~~~~~~~~~v~~G-~~--~~~~~~~~~G~~G~is~~~n~~P 212 (292)
--.+.-|+| .+++ +. +.+...++...+-..++.| -. +..-.....|++-.+ +||++-
T Consensus 149 lA~~~~g~~~iYLE~gsga~~pv~~e~V~~v~~~l~~~~LivGGGIrs~e~a~~~~~aGAD~IV--vGn~ie 218 (229)
T PRK04169 149 LAAEYLGMPIVYLEYGGGAGDPVPPEMVKAVKKALTDTPLIVGGGIRSPEQAREMAKAGADTIV--VGTIIE 218 (229)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEE--ECCCEE
T ss_conf 9999839808999658888997899999999973789878992896999999999976999999--886201
No 373
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=71.39 E-value=8.6 Score=19.12 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHCCCCEE
Q ss_conf 11358999973598403
Q gi|254780276|r 167 KIELVSEQRLSCGFDFI 183 (292)
Q Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (292)
|.+.+.++.....-++.
T Consensus 179 n~~l~~~l~~~~~ipvi 195 (241)
T COG0106 179 NVDLVKELAEAVDIPVI 195 (241)
T ss_pred CHHHHHHHHHHHCCCEE
T ss_conf 87999999998276789
No 374
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=71.35 E-value=8.6 Score=19.11 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC--CCCEEEECHHHCCCCCCHHHH
Q ss_conf 430036741027899997534321024432001234334317889999999875302--330121001111121110689
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS--SPIYIYNNPSRTVIEMDVDTM 148 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~--~pi~iYn~P~~~g~~~~~~~l 148 (292)
+|++..++-.+.+++.+.++.+.+.|+.++=+-.- .++.++-++..+.+.++.+ +.+++=-| . .++++.-
T Consensus 131 v~~~~s~~~~~~~~~~~~a~~~~~~Gf~~~KiKvG---~~~~~~D~~~v~~ir~~~g~~~~l~vDaN---~--~~~~~~A 202 (355)
T cd03321 131 VQAYDSHGLDGAKLATERAVTAAEEGFHAVKTKIG---YPTADEDLAVVRSIRQAVGDGVGLMVDYN---Q--SLTVPEA 202 (355)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHHHHHHHHHCCCCEEEECCC---C--CCCHHHH
T ss_conf 02562367899999999999999759998999799---99989999999999997199965973575---6--7688999
Q ss_pred HHHHHHCC--HHHHHHCC--CCCHHHHHHHHHHCC
Q ss_conf 99743203--02331001--221135899997359
Q gi|254780276|r 149 AELAATYP--NIVGVKDA--TGKIELVSEQRLSCG 179 (292)
Q Consensus 149 ~~L~~~~p--ni~giK~~--~~~~~~~~~~~~~~~ 179 (292)
.++++.++ ++.-+-+. ..|.+.+.++++..+
T Consensus 203 ~~~~~~l~~~~~~~~EqP~~~~d~~~~~~l~~~~~ 237 (355)
T cd03321 203 IERGQALDQEGLTWIEEPTLQHDYEGHARIASALR 237 (355)
T ss_pred HHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCCC
T ss_conf 99999752305775537899889999999985489
No 375
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=71.32 E-value=8.6 Score=19.11 Aligned_cols=27 Identities=22% Similarity=0.177 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf 868999999999999769989998672
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGT 44 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~ 44 (292)
+-|.+...+.++.++..|++||.+.-.
T Consensus 38 ~~d~~~Q~~~i~~~i~~~vDaIii~p~ 64 (271)
T cd06314 38 QGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999999999759999999268
No 376
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=71.31 E-value=8.6 Score=19.11 Aligned_cols=57 Identities=19% Similarity=0.079 Sum_probs=32.8
Q ss_pred EECCCCCCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCHHCCCHHHHHHHHHH
Q ss_conf 111201773898886899999999999976-9989998672325010899999998654
Q gi|254780276|r 5 SIPALITPFTKGNLIDEDAFVEHIEWQITE-GSGGLVPAGTTGESSTLSHEEHCRIIEL 62 (292)
Q Consensus 5 i~~~~~TPf~~d~~iD~~~~~~~i~~l~~~-gv~gi~~~G~tGE~~~Ls~~Er~~~~~~ 62 (292)
+|-+++||.++|++.|...+++-++.+... .-..+++.-||- ..--|.+.+..+++.
T Consensus 80 i~I~V~TP~~~~g~~d~s~l~~a~~~i~~~l~~~~lvii~STV-~pGTt~~i~~~ile~ 137 (411)
T TIGR03026 80 IIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV-PPGTTEEVVKPILER 137 (411)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC-CCCEEHHHHHHHHHH
T ss_conf 9997689866688721389999999999766899989995786-868104899998877
No 377
>cd07905 Adenylation_DNA_ligase_LigC The Adenylation domain of Mycobacterium tuberculosis LigC-like ATP-dependent DNA ligases is a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of ATP-dependent DNA ligases similar to Mycobacterium tuberculosis LigC. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. Members of this group contain adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold dom
Probab=71.20 E-value=8.6 Score=19.09 Aligned_cols=14 Identities=0% Similarity=0.102 Sum_probs=6.6
Q ss_pred CEEEECHHHCCCCC
Q ss_conf 01210011111211
Q gi|254780276|r 130 IYIYNNPSRTVIEM 143 (292)
Q Consensus 130 i~iYn~P~~~g~~~ 143 (292)
.++|+.-...|.++
T Consensus 108 ~~vFDiL~l~g~~l 121 (194)
T cd07905 108 FVAFDLLALGGVDL 121 (194)
T ss_pred EEEEEEEEECCCCC
T ss_conf 99988888897152
No 378
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=71.19 E-value=8.7 Score=19.09 Aligned_cols=97 Identities=11% Similarity=0.128 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC-----------CCCCCHHHHHHHH
Q ss_conf 89999999999997699899986723250108999999986543110123443003-----------6741027899997
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMA-----------GIGSNNTRESVEL 88 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~-----------gv~~~~~~~~i~~ 88 (292)
+.+..+...+.+....|+|+.+.++.. .+++.+.+. + .++|++. .|...+..-+...
T Consensus 44 ~~~~~~~~~~~l~~~~vDGiIl~~~~~------~~~~~~~l~---~---~~iP~V~~~r~~~~~~~~~V~~Dn~~~~~~a 111 (268)
T cd06271 44 DEDPLEVYRRLVESGLVDGVIISRTRP------DDPRVALLL---E---RGFPFVTHGRTELGDPHPWVDFDNEAAAYQA 111 (268)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCC------CHHHHHHHH---H---CCCCEEEECCCCCCCCCCEEEECHHHHHHHH
T ss_conf 989999999999848988899967889------819999999---7---7999999766568999968995769999999
Q ss_pred HHHHHHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 5343210244320012-3433431788999999987530233
Q gi|254780276|r 89 AQYAHSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 89 a~~a~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
++|..+.|..-+..+. |.-...+.+-. +-|++.+...+++
T Consensus 112 ~~~L~~~G~~~I~~i~~~~~~~~~~~R~-~Gf~~al~~~gl~ 152 (268)
T cd06271 112 VRRLIALGHRRIALLNPPEDLTFAQHRR-AGYRRALAEAGLP 152 (268)
T ss_pred HHHHHHHCCCEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCC
T ss_conf 9999985987487548875460799999-9999999983999
No 379
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=70.91 E-value=8.8 Score=19.04 Aligned_cols=164 Identities=15% Similarity=0.082 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEE--------EE-CCCCCCHHCCCHHHH---------------HHHHHHHHHCCCCCCCCC
Q ss_conf 689999999999997699899--------98-672325010899999---------------998654311012344300
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGL--------VP-AGTTGESSTLSHEEH---------------CRIIELCVKTVASRVPVM 74 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi--------~~-~G~tGE~~~Ls~~Er---------------~~~~~~~~~~~~~r~pii 74 (292)
=|+..|...|+...++|+|-+ || |=|.|=.-.=..... .++++.-++.-++ -|.
T Consensus 9 ADf~rLgee~~~v~~AGaD~iH~DVMDGHFVPNlT~Gp~v~~~~r~~g~~~P~DVHLMv~~pd~~~~~Fa~aGA~--~I~ 86 (216)
T TIGR01163 9 ADFARLGEEVKAVEEAGADLIHVDVMDGHFVPNLTFGPPVLEALRKYGTKLPIDVHLMVENPDRYIEDFAEAGAD--IIT 86 (216)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCC--EEE
T ss_conf 047779999999996699789986247971771002778999887407952126630357857778899970899--899
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHH
Q ss_conf 36741027899997534321024432001234334317889999999875302330121001111121110689997432
Q gi|254780276|r 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAAT 154 (292)
Q Consensus 75 ~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~ 154 (292)
+|. .++....+..+.-+++|+++-++..|. |.- ++.+++.+.+|+=+++==||..+|-.+=|+++.|+. +
T Consensus 87 vH~--Ea~~h~~R~l~~Ik~~G~~AG~v~NP~----TPl---~~~~~~L~~~D~VLlMSVnPGFgGQkFIP~~~~Kir-~ 156 (216)
T TIGR01163 87 VHA--EATEHIHRLLQLIKELGAKAGIVLNPA----TPL---EALEYVLEDVDLVLLMSVNPGFGGQKFIPETLEKIR-E 156 (216)
T ss_pred EEC--CCCCCHHHHHHHHHHCCCCEEEEECCC----CCH---HHHHHHHHHCCEEEEEEEECCCCCCCCHHHHHHHHH-H
T ss_conf 843--776267999999997189706886799----998---789989876298998876079988411057899999-9
Q ss_pred CCHHHHHHCCCCCHHHHHHHHH--HCCCC--EEECCC-CCCCHHHHHHHCCCCCCCCCCCC
Q ss_conf 0302331001221135899997--35984--032013-22100124320334455222232
Q gi|254780276|r 155 YPNIVGVKDATGKIELVSEQRL--SCGFD--FIQLSG-EDSSALGFNAHGGVGCISVTANV 210 (292)
Q Consensus 155 ~pni~giK~~~~~~~~~~~~~~--~~~~~--~~v~~G-~~~~~~~~~~~G~~G~is~~~n~ 210 (292)
.- +++. ..+.+ +.|=.| ++......-..|++-+++|.+=|
T Consensus 157 ~R----------------~~id~~~~~~~~~ieVDGGv~~~ni~~~~~AGAD~~VaGSaiF 201 (216)
T TIGR01163 157 LR----------------KMIDKLELGLSILIEVDGGVNEDNIAEVAEAGADILVAGSAIF 201 (216)
T ss_pred HH----------------HHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 99----------------9998602799558997179897679999975898999831020
No 380
>PRK09875 putative hydrolase; Provisional
Probab=70.88 E-value=8.8 Score=19.04 Aligned_cols=50 Identities=10% Similarity=0.126 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 9999999999997699899986723250108999999986543110123443003674
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG 78 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~ 78 (292)
++...+.++.+.+.|++.|+=+-..|=+- ..+.++.+.+.. .+.||+++|
T Consensus 33 ~~~~~~El~~~k~~Gg~tiVd~T~~g~GR------d~~~l~~is~~t--Gv~IV~~TG 82 (292)
T PRK09875 33 YAFICQEMNDLMTRGVRNVIEMTNRYMGR------NAQFMLDVMRET--GINVVACTG 82 (292)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCC------CHHHHHHHHHHC--CCCEEECCC
T ss_conf 99999999999980999799778877685------999999999972--990998177
No 381
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=70.87 E-value=8.8 Score=19.04 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=26.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf 7389888689999999999997699899986723
Q gi|254780276|r 12 PFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTT 45 (292)
Q Consensus 12 Pf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~t 45 (292)
-++.+++=|.+.....++.++..|+|+|.+.-..
T Consensus 34 ~~~~~~~~d~~~Qi~~ie~~i~~gvDaIii~p~d 67 (268)
T cd06306 34 LLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVS 67 (268)
T ss_pred EEECCCCCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9958999999999999999998399999986798
No 382
>LOAD_ligase consensus
Probab=70.73 E-value=5.9 Score=20.30 Aligned_cols=16 Identities=0% Similarity=0.065 Sum_probs=8.5
Q ss_pred CCCEEEECHHHCCCCC
Q ss_conf 3301210011111211
Q gi|254780276|r 128 SPIYIYNNPSRTVIEM 143 (292)
Q Consensus 128 ~pi~iYn~P~~~g~~~ 143 (292)
+-.++|+.+...|..+
T Consensus 90 ~~~~vFDil~~~g~~~ 105 (184)
T LOAD_ligase 90 LEYFVFDILYLNGEDL 105 (184)
T ss_pred EEEEEEEEECCCCCCC
T ss_conf 1899999636489815
No 383
>PRK02621 consensus
Probab=70.41 E-value=9 Score=18.97 Aligned_cols=77 Identities=18% Similarity=0.110 Sum_probs=49.0
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++.+.+.|++-+.+.--.|-. -....-.++++..++.+ .+|+-+|=|=-| ++.++.+-++|||-|.+-
T Consensus 32 P~~~ak~~~~~gad~lhivDld~a~--~~~~~~~~~I~~i~~~~--~ipi~vGGGIrs----~e~~~~ll~~GadkVii~ 103 (254)
T PRK02621 32 PVELACRYSQAGADELVFLDITATH--EGRATLIDVVYRTAEQV--FIPLTVGGGISS----LEGIKELLRAGADKVSLN 103 (254)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHC--CCCEEEECCEEE----HHHHHHHHHCCCCEEEEC
T ss_conf 9999999998599999998266765--67542899999999867--985899633535----799999997499989998
Q ss_pred CCCCC
Q ss_conf 23433
Q gi|254780276|r 104 IPYYN 108 (292)
Q Consensus 104 ~P~~~ 108 (292)
.-.+.
T Consensus 104 s~a~~ 108 (254)
T PRK02621 104 SAAVR 108 (254)
T ss_pred CHHHH
T ss_conf 86764
No 384
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase; InterPro: IPR005990 Synonyms: Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase IMP dehydrogenase (1.1.1.205 from EC,IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP . Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans . IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it and adopts a TIM barrel structure.; GO: 0003938 IMP dehydrogenase activity, 0006177 GMP biosynthetic process.
Probab=70.39 E-value=9 Score=18.97 Aligned_cols=174 Identities=16% Similarity=0.137 Sum_probs=101.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH---CCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 886899999999999976998999867232501---08999999986543110---123443003674102789999753
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESS---TLSHEEHCRIIELCVKT---VASRVPVMAGIGSNNTRESVELAQ 90 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~---~Ls~~Er~~~~~~~~~~---~~~r~pii~gv~~~~~~~~i~~a~ 90 (292)
..||.+... +-|.++.+.-|.+-=..+|.- ++++=+|.+-.-.+.+- -+|| +++|+.=-..++-.+++.
T Consensus 171 e~i~~e~A~---~~L~~~r~ekLpvVd~~~~lVgLiT~~Di~~~~~~P~A~kd~vG~~Gr--L~VgAAvg~r~~D~~R~~ 245 (476)
T TIGR01302 171 EGIDLEEAL---KVLHKHRIEKLPVVDKDGELVGLITVKDIVKRREFPHASKDTVGENGR--LIVGAAVGTREDDLERAE 245 (476)
T ss_pred CCCCHHHHH---HHHHHHCCCEEEEECCCCCEEEEEEHHHHHHHHHCCCCCCCCCCCCCE--EEEEEEECCCCCCHHHHH
T ss_conf 677789999---998860865047882789889998644788986388877887488860--899988468986189999
Q ss_pred HHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH-HCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC--CCCC
Q ss_conf 43210244320012343343178899999998753-02330121001111121110689997432030233100--1221
Q gi|254780276|r 91 YAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT-VSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD--ATGK 167 (292)
Q Consensus 91 ~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~-~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~--~~~~ 167 (292)
+..++|+|.|.|=. ...+...+++.-+++-.. .+++|+. |-.-+.+.-..|.+ - ..=|+|- .+|+
T Consensus 246 ~L~~AGvDv~viDs---shGhs~~vl~~ik~~k~~Yp~~~iia-------GNVaT~~~a~~LI~-A-gADg~rVGiGpGS 313 (476)
T TIGR01302 246 ALVEAGVDVIVIDS---SHGHSIYVLDSIKKIKKTYPDLDIIA-------GNVATAEQAKALID-A-GADGLRVGIGPGS 313 (476)
T ss_pred HHHHCCCCEEEEEC---CCCCCHHHHHHHHHHHHHCCEEEEEE-------CCCCCHHHHHHHHH-C-CCCEEEECCCCCC
T ss_conf 99965965899816---65453789999999986388057994-------34411788988985-2-8887898368898
Q ss_pred H-----------------HHHHHHHHHCCCCEEEC-CC---CCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf 1-----------------35899997359840320-13---221001243203344552222321
Q gi|254780276|r 168 I-----------------ELVSEQRLSCGFDFIQL-SG---EDSSALGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 168 ~-----------------~~~~~~~~~~~~~~~v~-~G---~~~~~~~~~~~G~~G~is~~~n~~ 211 (292)
+ .+..+.....+ +.++ .| +-..+.-++.+||+..+ +||++
T Consensus 314 ICTTr~V~gVGvPQ~TAv~~Va~~A~~~G--i~VIADGGIr~SGDivKAlAaGA~aVM--lGslL 374 (476)
T TIGR01302 314 ICTTRIVAGVGVPQITAVYDVAEYAAQSG--IPVIADGGIRYSGDIVKALAAGADAVM--LGSLL 374 (476)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHCC--CEEEECCCCCCHHHHHHHHHHCCCEEH--HCCCC
T ss_conf 11001565127626889999999997279--909983775625589999981677220--23421
No 385
>cd07901 Adenylation_DNA_ligase_Arch_LigB The Adenylation domain of archaeal and bacterial LigB-like DNA ligases is a component of the catalytic core unit. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. DNA ligases play a vital role in the diverse processes of DNA replication, recombination and repair. ATP-dependent ligases are present in many organisms such as viruses, bacteriohages, eukarya, archaea and bacteria. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of archaeal DNA ligases and bacterial proteins similar to Mycobacterium tuberculo
Probab=70.30 E-value=9 Score=18.95 Aligned_cols=13 Identities=8% Similarity=-0.133 Sum_probs=5.5
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999769989998
Q gi|254780276|r 29 EWQITEGSGGLVP 41 (292)
Q Consensus 29 ~~l~~~gv~gi~~ 41 (292)
+|+++-.-||+=+
T Consensus 26 ~~~~E~K~DG~R~ 38 (207)
T cd07901 26 PAAVEYKYDGARV 38 (207)
T ss_pred CEEEEEEECEEEE
T ss_conf 6699985881889
No 386
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=69.98 E-value=9.2 Score=18.91 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCCC--CCCC-CCCCHHHHHHHHHHHHHHCCCCCCC--EECCCCCC-----------CCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 23443--0036-7410278999975343210244320--01234334-----------3178899999998753023301
Q gi|254780276|r 68 ASRVP--VMAG-IGSNNTRESVELAQYAHSIGADALL--VVIPYYNK-----------PNRRGLLAHFGEIATTVSSPIY 131 (292)
Q Consensus 68 ~~r~p--ii~g-v~~~~~~~~i~~a~~a~~~Gad~i~--v~~P~~~~-----------~~~~~i~~~~~~i~~~~~~pi~ 131 (292)
++.-| +|+| |+-.|-+++++.|+..+++|++... +.-|.|++ +..++=.++++++.+..++|++
T Consensus 6 g~~~pl~~IaGPCsvEs~e~~~~~A~~lk~~~~~~~~~~ifK~sf~KaNRTsp~sf~G~G~e~gL~~l~~vk~~~glpi~ 85 (264)
T PRK05198 6 GNDLPFVLIAGPCVIESRDLALEIAEHLKEITEKLGIPFVFKASFDKANRSSIHSYRGPGLEEGLKILAEVKETFGVPVL 85 (264)
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 89980489947782039999999999999988754998485367786667888676786688898999999998499640
Q ss_pred E--EEC---HHHCC-CC---------CCHHHHHHHHHHCCHHHHHHCC---CC-CHHHHHHHHHHCCCC
Q ss_conf 2--100---11111-21---------1106899974320302331001---22-113589999735984
Q gi|254780276|r 132 I--YNN---PSRTV-IE---------MDVDTMAELAATYPNIVGVKDA---TG-KIELVSEQRLSCGFD 181 (292)
Q Consensus 132 i--Yn~---P~~~g-~~---------~~~~~l~~L~~~~pni~giK~~---~~-~~~~~~~~~~~~~~~ 181 (292)
- .+. ..... ++ -..+++..+++ ....+-+|-. ++ ++....+.+...+.+
T Consensus 86 TeV~~~~~~e~~~~~vDilQIgAfl~rqtdLl~a~a~-t~kpV~lKkgqf~sp~~~~~a~eki~~~Gn~ 153 (264)
T PRK05198 86 TDVHEPEQAAPVAEVVDVLQIPAFLCRQTDLLVAAAK-TGKVVNIKKGQFLAPWDMKNVVDKVRETGND 153 (264)
T ss_pred EEECCHHHHHHHHHHHHHHEECHHHHCCHHHHHHHHH-CCCEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 1467899999998340232012354034799999986-4990884255658999999999999974998
No 387
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=69.59 E-value=9.3 Score=18.85 Aligned_cols=14 Identities=21% Similarity=-0.076 Sum_probs=5.2
Q ss_pred HHHHHHHHCCCCEE
Q ss_conf 58999973598403
Q gi|254780276|r 170 LVSEQRLSCGFDFI 183 (292)
Q Consensus 170 ~~~~~~~~~~~~~~ 183 (292)
++..+++..++++.
T Consensus 229 rv~avReavG~d~~ 242 (415)
T cd03324 229 RCRLAREVIGPDNK 242 (415)
T ss_pred HHHHHHHHHCCCCE
T ss_conf 99999998288874
No 388
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=69.50 E-value=9.4 Score=18.84 Aligned_cols=104 Identities=12% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHH---HHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 689999999999997699899986723250108999999986543---110123443-0036741027899997534321
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELC---VKTVASRVP-VMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~---~~~~~~r~p-ii~gv~~~~~~~~i~~a~~a~~ 94 (292)
-|.+.-++.++.+.+.+|+|+.+..+. .+.++..+.++.. +=..+...+ -+..|...+..-....++|..+
T Consensus 39 ~~~~~e~~~l~~l~~~~vdGiIi~~~~-----~~~~~~~~~~~~~~iPvV~~~r~~~~~~~~V~~D~~~~~~~a~~~L~~ 113 (269)
T cd06281 39 NDPERELEILRSFEQRRMDGIIIAPGD-----ERDPELVDALASLDLPIVLLDRDMGGGADAVLFDHAAGMRQAVEYLIS 113 (269)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCC-----CCCHHHHHHHHHCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 998999999999985799899976777-----799999999984799889984468999998998759999999999997
Q ss_pred CCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 024432001-2343343178899999998753023
Q gi|254780276|r 95 IGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSS 128 (292)
Q Consensus 95 ~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~ 128 (292)
.|..-+.++ .|.....+.+-...|.+.+ +..++
T Consensus 114 ~G~~~I~~i~~~~~~~~~~~R~~G~~~al-~~~g~ 147 (269)
T cd06281 114 LGHRRIALVGGGSNTRPGRERLEGYKAAF-AAAGL 147 (269)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHH-HHCCC
T ss_conf 59986689807887767999999999999-97799
No 389
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=69.22 E-value=9.5 Score=18.80 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=9.7
Q ss_pred HHHCCCCE-EECCCCCCCHHHH
Q ss_conf 97359840-3201322100124
Q gi|254780276|r 175 RLSCGFDF-IQLSGEDSSALGF 195 (292)
Q Consensus 175 ~~~~~~~~-~v~~G~~~~~~~~ 195 (292)
+...++++ .+|+.+|.+.+..
T Consensus 205 L~a~~~~id~V~a~ND~mAlGA 226 (330)
T PRK10355 205 LTANNNKIDAVVASNDATAGGA 226 (330)
T ss_pred HHHCCCCEEEEEECCCCHHHHH
T ss_conf 9609985169998997148999
No 390
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=68.78 E-value=9.7 Score=18.73 Aligned_cols=110 Identities=19% Similarity=0.168 Sum_probs=68.7
Q ss_pred HHHHHHHHHCCCCE-EEEC---------CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC----------CHHHH
Q ss_conf 99999999769989-9986---------7232501089999999865431101234430036741----------02789
Q gi|254780276|r 25 VEHIEWQITEGSGG-LVPA---------GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS----------NNTRE 84 (292)
Q Consensus 25 ~~~i~~l~~~gv~g-i~~~---------G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~----------~~~~~ 84 (292)
.+-++....+|=.+ ++++ ++.||.+.=..++-.++.+.+.+....+.-.++|+-- .+..+
T Consensus 22 ~ea~~~F~rAGGt~~il~nlps~~~g~~~~~~edy~r~yd~~lr~ve~~r~e~~~~~~~vvGvHPaE~~~l~e~~~~pee 101 (285)
T COG1831 22 LEAARRFHRAGGTHLILVNLPSWSYGIAPTGGEDYRRLYDIHLRLVEKIREEGPVEAYAVVGVHPAEVSRLAEAGRSPEE 101 (285)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCHHH
T ss_conf 99999999748957998603520036788868899999999999999998754721578841679999999984468678
Q ss_pred HHHHHHHH--------HHCCCCCC-CEECCCCCCCCH-----HHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99975343--------21024432-001234334317-----8899999998753023301210
Q gi|254780276|r 85 SVELAQYA--------HSIGADAL-LVVIPYYNKPNR-----RGLLAHFGEIATTVSSPIYIYN 134 (292)
Q Consensus 85 ~i~~a~~a--------~~~Gad~i-~v~~P~~~~~~~-----~~i~~~~~~i~~~~~~pi~iYn 134 (292)
+++.++++ ++--|+|| -+.-|.|--+++ .++..|.-+++...+.|+.++-
T Consensus 102 a~e~m~~~lelA~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~vqLHt 165 (285)
T COG1831 102 ALEEMRHALELAAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCAVQLHT 165 (285)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 9999999999999998503323310258888989999999999999999998534798379753
No 391
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=68.62 E-value=9.7 Score=18.71 Aligned_cols=86 Identities=14% Similarity=0.232 Sum_probs=56.3
Q ss_pred CCCCC--CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCC----CCHHHHHHHHHHH---HHHHCCCCEEEECHHHCCCCC
Q ss_conf 00367--41027899997534321024432001234334----3178899999998---753023301210011111211
Q gi|254780276|r 73 VMAGI--GSNNTRESVELAQYAHSIGADALLVVIPYYNK----PNRRGLLAHFGEI---ATTVSSPIYIYNNPSRTVIEM 143 (292)
Q Consensus 73 ii~gv--~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~----~~~~~i~~~~~~i---~~~~~~pi~iYn~P~~~g~~~ 143 (292)
++.++ |..|.++++++++.|.+.|+.-+... |.+++ .+.+.+.+-+.++ ...-.+|+-++ |. .-+.+
T Consensus 8 Ilp~iDDGp~s~eesl~ml~~A~~qGvt~iVaT-sHh~~g~y~n~~~~v~~~~~~ln~~~~~~aidl~v~--pG-QEIrI 83 (254)
T COG4464 8 ILPDIDDGPKSLEESLAMLREAVRQGVTKIVAT-SHHLHGRYENPIEKVKEKANQLNEILKKEAIDLKVL--PG-QEIRI 83 (254)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEC--CC-CEEEE
T ss_conf 667878898758999999999997576079513-332477668919999999999998888626782661--68-66897
Q ss_pred CHHHHHHHHHHCCHHHHHHCC
Q ss_conf 106899974320302331001
Q gi|254780276|r 144 DVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 144 ~~~~l~~L~~~~pni~giK~~ 164 (292)
+.+++..|.+ ..|-++-++
T Consensus 84 t~~vl~~l~~--g~I~tinds 102 (254)
T COG4464 84 TGDVLDDLDK--GIILTINDS 102 (254)
T ss_pred CHHHHHHHHC--CCCCCCCCC
T ss_conf 5088878762--843403366
No 392
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase; InterPro: IPR010210 This entry represents a clade of primarily archaeal sequences related to fructose-bisphosphate aldolase. The members appear to be phospho-2-dehydro-3-deoxyheptonate aldolases. This enzyme is the first step of the chorismate biosynthesis pathway. Evidence for this assignment is based on gene clustering and phylogenetic profiling. A group of species lack members of the three other types of phospho-2-dehydro-3-deoxyheptonate aldolase (represented by IPR006219 from INTERPRO, IPR002480 from INTERPRO and IPR006268 from INTERPRO), and also apparently lack the well-known forms of step 2 (3-dehydroquinate synthase), but contain all other steps of the pathway: Aquifex, Archaeoglobus, Halobacterium, Methanococcus, Methanopyrus and Methanobacterium. In Aquifex, Archaeoglobus, Halobacterium, Methanopyrus and Methanosarcina the genes are clustered with other genes from the chorismate, phenylalanine, tyrosine and tryptophan biosynthesis pathways. In addition, these genes in Archaeoglobus, Halobacterium, and Methanosarcina are adjacent to 3-dehydroquinate synthase (IPR002812 from INTERPRO) which also has the property of having members only in those species which lack steps 1 and 2. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally..
Probab=68.33 E-value=9.9 Score=18.67 Aligned_cols=174 Identities=17% Similarity=0.232 Sum_probs=101.2
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC-CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC---CHHHHHHHH---
Q ss_conf 888689999999999997699899986-7232501089999999865431101234430036741---027899997---
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITEGSGGLVPA-GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS---NNTRESVEL--- 88 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~gv~gi~~~-G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~---~~~~~~i~~--- 88 (292)
||=+|. ++-|+-..+.|++.+++- | +++......+-.+-+|++.++ .+++..-+.
T Consensus 33 ~GLvdi---~~tv~~V~~gGadAVL~hkG---------------i~~~~h~~~g~D~GlIvHLsAST~L~P~p~~K~~~~ 94 (259)
T TIGR01949 33 DGLVDI---RKTVNEVAEGGADAVLLHKG---------------IARRGHREKGKDAGLIVHLSASTSLSPDPNDKRIVT 94 (259)
T ss_pred CCHHHH---HHHHHHHHCCCCCEEEECCC---------------CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf 111148---78999976077667852787---------------100456566831699986045432588887875785
Q ss_pred -HHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH---CCCCEEEECHHHCCCC--CCHHHH---HHHHHHCCH-H
Q ss_conf -53432102443200123433431788999999987530---2330121001111121--110689---997432030-2
Q gi|254780276|r 89 -AQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV---SSPIYIYNNPSRTVIE--MDVDTM---AELAATYPN-I 158 (292)
Q Consensus 89 -a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~---~~pi~iYn~P~~~g~~--~~~~~l---~~L~~~~pn-i 158 (292)
.+.|-.+|||||.+.--.=.. ++.+.+.-.-.|++-+ .+|++-==||.-.++. .+++++ .||..|+.- |
T Consensus 95 tVE~Ai~~GADAVS~HvNvGs~-~e~d~~~~lg~vA~~ad~~GvPlLAMmYaRG~~i~~e~d~~~v~HAaRlg~ElGADv 173 (259)
T TIGR01949 95 TVEDAIRLGADAVSIHVNVGSD-TEADQIEDLGDVAEIADDWGVPLLAMMYARGPRIDDEVDPEVVAHAARLGEELGADV 173 (259)
T ss_pred CHHHHHHCCCCEEEEEEECCCC-CCHHHHHHHHHHHHHHHHCCCCHHECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 1489973289867998864898-738999999899998865488420112788688766447678888876535345776
Q ss_pred HHHHC-CCCCHHHHHHHHHHCCCCEEECCCCC----CCH----HHHHHHCCCCCCCCCCCCC
Q ss_conf 33100-12211358999973598403201322----100----1243203344552222321
Q gi|254780276|r 159 VGVKD-ATGKIELVSEQRLSCGFDFIQLSGED----SSA----LGFNAHGGVGCISVTANVV 211 (292)
Q Consensus 159 ~giK~-~~~~~~~~~~~~~~~~~~~~v~~G~~----~~~----~~~~~~G~~G~is~~~n~~ 211 (292)
+|- -+||++-|.++...+.-++.+-.|.- .-+ -+++..|+.|...|= |+|
T Consensus 174 --vK~~Y~Gd~~SF~~VV~~c~~PVvvAGG~k~~s~~efLq~v~DA~~aGAAGvs~GR-nvF 232 (259)
T TIGR01949 174 --VKVPYTGDIDSFEEVVKACAVPVVVAGGPKLASDREFLQMVKDAMEAGAAGVSVGR-NVF 232 (259)
T ss_pred --EEECCCCCHHHHHHHHCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCEECCC-CCC
T ss_conf --65143177467999962178777873777988746777889999981878231056-301
No 393
>KOG4175 consensus
Probab=68.24 E-value=9.9 Score=18.66 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 78999975343210244320012343343178899999998753
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT 125 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~ 125 (292)
...++++.+.|...|+..=.+..-||.+.-..+..+|.+.+.++
T Consensus 79 l~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~a 122 (268)
T KOG4175 79 LNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNA 122 (268)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHC
T ss_conf 89999999985046863026622014488764078999999965
No 394
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=67.92 E-value=7.1 Score=19.70 Aligned_cols=35 Identities=9% Similarity=0.096 Sum_probs=25.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 43003674102789999753432102443200123
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP 105 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P 105 (292)
++-+.|+...|.+..++.++.+.++|..++++.+-
T Consensus 50 I~SMPGi~R~SiD~L~~eie~~~~lGI~av~LFgi 84 (323)
T PRK13384 50 ISTLPGISRLPESALADEIERLYALGIRYVMPFGI 84 (323)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 79999952479999999999999789968983699
No 395
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=67.78 E-value=10 Score=18.59 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHH
Q ss_conf 78999975343210244320012343343178899999998
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEI 122 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i 122 (292)
-+.+++-+|.|++.|..-..-. -.+...+.++|.++|..+
T Consensus 148 Fd~av~aIr~ak~~G~~V~iN~-Tvf~~~n~~~i~~~~d~~ 187 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTNT-TLFNDTDPEEVAEFFDYL 187 (318)
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-EEECCCCHHHHHHHHHHH
T ss_conf 9999999999998699467998-970689999999999999
No 396
>PRK08649 inositol-5-monophosphate dehydrogenase; Validated
Probab=67.25 E-value=10 Score=18.52 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 2789999753432102443200
Q gi|254780276|r 81 NTRESVELAQYAHSIGADALLV 102 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i~v 102 (292)
...+..++++...++|+|.+.+
T Consensus 138 ~~~~~~~~~~~Lv~aGvDvlvI 159 (368)
T PRK08649 138 SPQNAQKLGPTVVEAGADLFVI 159 (368)
T ss_pred CCHHHHHHHHHHHHCCCCEEEE
T ss_conf 2463899999999749988998
No 397
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=67.12 E-value=7.5 Score=19.54 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=18.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 4300367410278999975343210244320012
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++=+.|+...+.+..++.++.+.++|..++++.|
T Consensus 42 I~SMPGi~r~sid~l~~~v~~~~~lGI~av~LFg 75 (320)
T cd04823 42 IPSMPGVFRLSIDELLKEAEEAVDLGIPAVALFP 75 (320)
T ss_pred CCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 6899986065899999999999988997899954
No 398
>PRK08636 aspartate aminotransferase; Provisional
Probab=67.06 E-value=10 Score=18.50 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHCCCCCC----CCCCCCCCCHHHHHHHHH-HHHHHCCCCCCCEECCCCCCC-----------------
Q ss_conf 9999998654311012344----300367410278999975-343210244320012343343-----------------
Q gi|254780276|r 53 HEEHCRIIELCVKTVASRV----PVMAGIGSNNTRESVELA-QYAHSIGADALLVVIPYYNKP----------------- 110 (292)
Q Consensus 53 ~~Er~~~~~~~~~~~~~r~----pii~gv~~~~~~~~i~~a-~~a~~~Gad~i~v~~P~~~~~----------------- 110 (292)
.+=|..+.+...+..+-.+ -|++..| ..+++.++ +..-+-| |-|++..|+|...
T Consensus 74 ~eLR~aia~~~~~~~g~~~~p~~~I~vt~G---a~~al~~~~~al~~pG-D~Vli~~P~Y~~y~~~~~~~g~~~~~~~l~ 149 (403)
T PRK08636 74 YKLRLAICNWYKRKYNVDLDPDTEVVATMG---SKEGYVHLVQAITNPG-DVAIVPDPAYPIHSQAFILAGGNVHKMPLE 149 (403)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECC---HHHHHHHHHHHHCCCC-CEEEECCCCCCCHHHHHHHCCCEEEEEECC
T ss_conf 999999999999970999999874999179---8999999999977999-989977888703899999849968997433
Q ss_pred -------CHHHHHHHHHHHHHH-HC-CCCEEEECHHH-CCCCCCHHHHHHHHH
Q ss_conf -------178899999998753-02-33012100111-112111068999743
Q gi|254780276|r 111 -------NRRGLLAHFGEIATT-VS-SPIYIYNNPSR-TVIEMDVDTMAELAA 153 (292)
Q Consensus 111 -------~~~~i~~~~~~i~~~-~~-~pi~iYn~P~~-~g~~~~~~~l~~L~~ 153 (292)
+.+.....+.++.+. ++ .-+++.|+|+. ||..++.+.+.+|++
T Consensus 150 ~~~~~~~d~~~~~~~le~~~~~~~~ktk~iiln~P~NPTG~v~s~~~l~~i~~ 202 (403)
T PRK08636 150 YNEDFELDEDKFFENLEKALRESSPKPKYVVVNFPHNPTTATVEKSFYERLVA 202 (403)
T ss_pred CCCCCCCCHHHHHHCHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 57774246665202589987626887179998999899887889999999999
No 399
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=67.04 E-value=10 Score=18.49 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=65.9
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCEE------CCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCC
Q ss_conf 430036-741027899997534321024432001------2343343178899999998753023301210011111211
Q gi|254780276|r 71 VPVMAG-IGSNNTRESVELAQYAHSIGADALLVV------IPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEM 143 (292)
Q Consensus 71 ~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v~------~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~ 143 (292)
.-+++| |+-.|-+++.+.|+..+..|++.+--. .||-|..-.++=..+.+++++.+++|++- - .|
T Consensus 46 ~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlge~gL~~l~~a~~~~Gl~vvt-------E-vm 117 (286)
T COG2876 46 LRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPYSFQGLGEEGLKLLKRAADETGLPVVT-------E-VM 117 (286)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE-------E-EC
T ss_conf 389954742477999999999998736223137767888995333665778899999988872990588-------9-54
Q ss_pred CHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 1068999743203023310012211358999973
Q gi|254780276|r 144 DVDTMAELAATYPNIVGVKDATGKIELVSEQRLS 177 (292)
Q Consensus 144 ~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~~~ 177 (292)
++..+...+ +.--+ +--...|+..+.-+...
T Consensus 118 ~~~~~e~~~-~y~Di--lqvGARNMQNF~LLke~ 148 (286)
T COG2876 118 DVRDVEAAA-EYADI--LQVGARNMQNFALLKEV 148 (286)
T ss_pred CHHHHHHHH-HHHHH--HHHCCCCHHHHHHHHHH
T ss_conf 898999998-66169--88633200516999982
No 400
>PRK07178 acetyl-CoA carboxylase; Validated
Probab=66.93 E-value=10 Score=18.48 Aligned_cols=98 Identities=19% Similarity=0.233 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHCCCCEEEEC-CCCCCHHCCCHH-------------HHHH------HHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 99999999997699899986-723250108999-------------9999------865431101234430036741027
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPA-GTTGESSTLSHE-------------EHCR------IIELCVKTVASRVPVMAGIGSNNT 82 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~-G~tGE~~~Ls~~-------------Er~~------~~~~~~~~~~~r~pii~gv~~~~~ 82 (292)
-..++++-..+.|++++.++ |..+|...+... +-.+ -.+.+++.+ .+|++.|..+. .
T Consensus 61 n~~~Ii~~A~~~g~dAiHPGYGFLSEn~~FA~~~~~~gi~FIGPs~~~i~~~GdK~~ar~~a~~~--gvPv~pgs~~~-v 137 (471)
T PRK07178 61 NPRKLVNLAVETGCDALHPGYGFLSENAELAEICAERGIKFIGPSADVIRRMGDKTEARRSMIKA--GVPVTPGSEGN-L 137 (471)
T ss_pred CHHHHHHHHHHHCCCEEECCCCHHHCCHHHHHHHHHCCCEEECCCHHHHHHHHCHHHHHHHHHHC--CCCCCCCCCCC-C
T ss_conf 99999999999699999778333115989999999789989995999999874839899999986--99826896886-5
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCC--------CCCHHHHHHHHHHHHHH
Q ss_conf 89999753432102443200123433--------43178899999998753
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYN--------KPNRRGLLAHFGEIATT 125 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~--------~~~~~~i~~~~~~i~~~ 125 (292)
.+.-+..+.|++.|+- +|+= +.+- -.+++++.+.|+.+...
T Consensus 138 ~~~eea~~~A~~iGyP-V~lK-Aa~GGGGrGmrvv~~~~el~~~~~~~~~E 186 (471)
T PRK07178 138 ADIDEALAEAERIGYP-VMLK-ATSGGGGRGIRRCNSREELEQNFPRVISE 186 (471)
T ss_pred CCHHHHHHHHHHCCCC-EEEE-ECCCCCCCCEEEECCCHHHHHHHHHHHHH
T ss_conf 6699999999866981-5863-20268766449976605688999999999
No 401
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=66.88 E-value=9.3 Score=18.86 Aligned_cols=24 Identities=4% Similarity=-0.092 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 317889999999875302330121
Q gi|254780276|r 110 PNRRGLLAHFGEIATTVSSPIYIY 133 (292)
Q Consensus 110 ~~~~~i~~~~~~i~~~~~~pi~iY 133 (292)
|+......+...+|++-++|.+-.
T Consensus 63 pss~~s~~~v~Sic~~l~IP~i~~ 86 (364)
T cd06390 63 FYDRKTVNMLTSFCGALHVCFITP 86 (364)
T ss_pred CCCHHHHHHHHHHHCCCCCCCEEC
T ss_conf 897678999999847878861114
No 402
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=66.87 E-value=11 Score=18.47 Aligned_cols=144 Identities=17% Similarity=0.158 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCC----CCCCCCC--CCCCHHHHHHHHHHHHH
Q ss_conf 89999999999997699899986723250108999999986543110123----4430036--74102789999753432
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS----RVPVMAG--IGSNNTRESVELAQYAH 93 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~----r~pii~g--v~~~~~~~~i~~a~~a~ 93 (292)
-.+.+.++++-..+.|...+.++-+ .+..+++...+ |+-.++| -|...++.-...++.|-
T Consensus 22 T~~~I~~l~~eA~~~~f~avCV~P~--------------~V~~A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai 87 (228)
T COG0274 22 TEEDIARLCAEAKEYGFAAVCVNPS--------------YVPLAKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAI 87 (228)
T ss_pred CHHHHHHHHHHHHHHCCEEEEECCC--------------HHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 9999999999988538618997713--------------59999998446887489986279899873888999999999
Q ss_pred HCCCCCC-CEECCCCCC-CCHHHHHHHHHHHHHHHCCC----CEEEECHHHCCCCCCHHHHHHHHHHC---CHHHHHHCC
Q ss_conf 1024432-001234334-31788999999987530233----01210011111211106899974320---302331001
Q gi|254780276|r 94 SIGADAL-LVVIPYYNK-PNRRGLLAHFGEIATTVSSP----IYIYNNPSRTVIEMDVDTMAELAATY---PNIVGVKDA 164 (292)
Q Consensus 94 ~~Gad~i-~v~~P~~~~-~~~~~i~~~~~~i~~~~~~p----i~iYn~P~~~g~~~~~~~l~~L~~~~---pni~giK~~ 164 (292)
+.|||=+ ||++.-+.+ .+.+.+++=.+.|.+++..+ +|+ . ++. ++.+...+.+ ++ -+.-.||-|
T Consensus 88 ~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIl-E----t~~-Lt~ee~~~A~-~i~~~aGAdFVKTS 160 (228)
T COG0274 88 ENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVIL-E----TGL-LTDEEKRKAC-EIAIEAGADFVKTS 160 (228)
T ss_pred HCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEE-E----CCC-CCHHHHHHHH-HHHHHHCCCEEECC
T ss_conf 849970256400899836988999999999999828774489997-4----255-6979999999-99999589989847
Q ss_pred CC------CHHHHHHHHHHCCCCEEE
Q ss_conf 22------113589999735984032
Q gi|254780276|r 165 TG------KIELVSEQRLSCGFDFIQ 184 (292)
Q Consensus 165 ~~------~~~~~~~~~~~~~~~~~v 184 (292)
+| ..+....+.+..++++.+
T Consensus 161 TGf~~~gAT~edv~lM~~~vg~~vgv 186 (228)
T COG0274 161 TGFSAGGATVEDVKLMKETVGGRVGV 186 (228)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 78789898799999999985657105
No 403
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=66.85 E-value=11 Score=18.47 Aligned_cols=143 Identities=11% Similarity=0.089 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHH-HHHHHHH--CCCCC-CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 86899999999999976998999867232501089999999-8654311--01234-43003674102789999753432
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCR-IIELCVK--TVASR-VPVMAGIGSNNTRESVELAQYAH 93 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~-~~~~~~~--~~~~r-~pii~gv~~~~~~~~i~~a~~a~ 93 (292)
+-|.+.-++.++.+++.+++|+.+...... .++..+ +.+.-.- ....+ -+-+..|...+-.-..+.+++..
T Consensus 38 ~~~~~~e~~~i~~l~~~~vdGiIi~~~~~~-----~~~~~~~l~~~~iPvV~~~~~~~~~~~~V~~Dn~~~~~~~~~~L~ 112 (266)
T cd06282 38 DYDAEREADAVETLLRQRVDGLILTVADAA-----TSPALDLLDAERVPYVLAYNDPQPGRPSVSVDNRAAARDVAQALA 112 (266)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCC-----CHHHHHHHHHCCCCEEEEECCCCCCCCEEEECHHHHHHHHHHHHH
T ss_conf 999799999999999659987999637877-----559999998559978999504789999899887999999999999
Q ss_pred HCCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC-CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCH
Q ss_conf 1024432001-23433431788999999987530233-012100111112111068999743203023310012211
Q gi|254780276|r 94 SIGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP-IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI 168 (292)
Q Consensus 94 ~~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p-i~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~ 168 (292)
+.|..-+..+ .|........+=.+=|++.+...+++ ...+..+... .-..+.+.++....+.+.++ .++.|.
T Consensus 113 ~~G~~~i~~i~~~~~~~~~~~~R~~Gf~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ai-~~~nD~ 186 (266)
T cd06282 113 ALGHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIPFNT--AALPSALLALLTAHPAPTAI-FCSNDL 186 (266)
T ss_pred HCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH--HHHHHHHHHHHHCCCCCCEE-EECCCH
T ss_conf 739956999977788886899999999999998699976179934872--68999999998379998479-853888
No 404
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=66.68 E-value=11 Score=18.45 Aligned_cols=119 Identities=15% Similarity=0.127 Sum_probs=59.4
Q ss_pred HHHHHHHHCCCCEEEECCCC------CCHH-CCCHHHHHHHHHHHHHCCC--CCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999997699899986723------2501-0899999998654311012--3443003674102789999753432102
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTT------GESS-TLSHEEHCRIIELCVKTVA--SRVPVMAGIGSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~t------GE~~-~Ls~~Er~~~~~~~~~~~~--~r~pii~gv~~~~~~~~i~~a~~a~~~G 96 (292)
..+++++++||+-+...-.+ -|++ -=+.|+-.+.++...+++. ...-||.||. +=+...+-....++.|
T Consensus 119 ~~a~~li~~Gv~EVtfTVFatDp~LR~ewM~D~~pE~SL~~L~~fc~~cev~~A~ViiPGVN--DGevL~kT~~~Le~wG 196 (404)
T TIGR03278 119 EIAEFLIDNGVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCESCEVHAASVIIPGVN--DGDVLWKTCADLESWG 196 (404)
T ss_pred HHHHHHHHCCCCEEEEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCC--CHHHHHHHHHHHHHHC
T ss_conf 99999996797379999860898999987169986889999999984411137899806868--5699999999999838
Q ss_pred CCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCC-CHHHHHHHHHHCCHHHHHHC
Q ss_conf 44320012343343178899999998753023301210011111211-10689997432030233100
Q gi|254780276|r 97 ADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEM-DVDTMAELAATYPNIVGVKD 163 (292)
Q Consensus 97 ad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~-~~~~l~~L~~~~pni~giK~ 163 (292)
|.|+++|- | |...+-.+++-|.|-.-|+.. +++.+.+|.+++-.--.++-
T Consensus 197 akg~ILMR---F--------------AN~~eqGLIL~N~Pii~gi~~htv~EF~~lV~e~~~~~~~Ri 247 (404)
T TIGR03278 197 AKALILMR---F--------------ANTEEQGLILGNAPIIPGIKPHTVSEFKNIVRETHKEFPIRV 247 (404)
T ss_pred CCEEEEEE---E--------------CCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 75689874---0--------------577444135568767688776778999999999998639345
No 405
>cd07907 Adenylation_DNA_ligase_Bac2 The Adenylation domain of putative bacterial ATP-dependent DNA ligases is inferred by similarity to be a component of the catalytic core unit. Bacterial DNA ligases are divided into two broad classes: NAD-dependent and ATP-dependent. All bacterial species have a NAD-dependent DNA ligase (LigA). Some bacterial genomes contain multiple genes for DNA ligases that are predicted to use ATP as their cofactor, including Mycobacterium tuberculosis LigB, LigC, and LigD. This group is composed of predicted bacterial ATP-dependent DNA ligases. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation and C-terminal oligouncleotide/oligosaccharide binding (OB)-fold domains comprise a catalytic core unit that is common to most members of the ATP-dependent DNA ligase family, including this group. The adenyl
Probab=66.59 E-value=11 Score=18.43 Aligned_cols=10 Identities=0% Similarity=-0.110 Sum_probs=4.5
Q ss_pred CHHHHHHHHH
Q ss_conf 0278999975
Q gi|254780276|r 80 NNTRESVELA 89 (292)
Q Consensus 80 ~~~~~~i~~a 89 (292)
.|..+++++.
T Consensus 10 ~~~~~~~~r~ 19 (213)
T cd07907 10 ESAEAIWDRF 19 (213)
T ss_pred CCHHHHHHHH
T ss_conf 8899999986
No 406
>pfam02896 PEP-utilizers_C PEP-utilising enzyme, TIM barrel domain.
Probab=66.54 E-value=7.8 Score=19.41 Aligned_cols=62 Identities=16% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHH------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999999976998999867232501------0899999998654311012344300367410278999975
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESS------TLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELA 89 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~------~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a 89 (292)
...++...+.|++||-..=| |+. ..+.+|+.+..+.+++..++| ||++=+.+...+..+...
T Consensus 29 ~~d~~~a~~~gadGIGL~RT--Eflf~~~~~~P~eeeq~~~y~~i~~~~~~k-pV~iRtlD~G~DK~l~~~ 96 (292)
T pfam02896 29 PEDAEGALANGAEGIGLYRT--EFLFMDRDELPTEDEQFEAYKGVLEAMNGR-PVTVRTLDIGGDKELPYL 96 (292)
T ss_pred HHHHHHHHHCCCCEECHHHH--HHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-EEEEEEECCCCCCCCCCC
T ss_conf 99999998579973606888--999829998997999999999999835998-489983037866668888
No 407
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=66.51 E-value=6.7 Score=19.92 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=12.0
Q ss_pred HHHHHCCCCCCCEECCCCCCCCHHHHHHHH
Q ss_conf 343210244320012343343178899999
Q gi|254780276|r 90 QYAHSIGADALLVVIPYYNKPNRRGLLAHF 119 (292)
Q Consensus 90 ~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~ 119 (292)
-.|...|||+|+++.- .++++++.+++
T Consensus 127 ~EAr~~GADaILLIva---~L~~~~L~~l~ 153 (695)
T PRK13802 127 FEARAHGADLVLLIVA---ALDDAQLKHLL 153 (695)
T ss_pred HHHHHCCCCHHHHHHH---HCCHHHHHHHH
T ss_conf 9999828788999998---66999999999
No 408
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=66.47 E-value=7.7 Score=19.46 Aligned_cols=58 Identities=17% Similarity=0.209 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCC--C-------CCCHHHHHH-HHHHHHHHHC
Q ss_conf 44300367410278999975343210244320012343--3-------431788999-9999875302
Q gi|254780276|r 70 RVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYY--N-------KPNRRGLLA-HFGEIATTVS 127 (292)
Q Consensus 70 r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~--~-------~~~~~~i~~-~~~~i~~~~~ 127 (292)
.++-+.|+-..+.+...+.++.+.++|..+|++.+-.- . ..+++++++ -.+.|-++.+
T Consensus 48 ~I~SMPgv~r~s~d~l~~~~~~~~~lGi~av~LFgvp~~~~Kd~~gs~A~~~~givqravr~ik~~~p 115 (330)
T COG0113 48 EIPSMPGVYRYSLDRLVEEAEELVDLGIPAVILFGVPDDSKKDETGSEAYDPDGIVQRAVRAIKEAFP 115 (330)
T ss_pred CCCCCCCCEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 16789983020699999999999966997799808986323674332003877809999999998689
No 409
>TIGR02753 sodN superoxide dismutase, Ni; InterPro: IPR014123 This entry represents nickel-dependent superoxide dismutase (NiSOD) (1.15.1.1 from EC), a SOD enzyme that uses nickel, rather than iron, manganese, copper, or zinc. All SOD enzymes catalyse the dismutation of toxic superoxide radical anions to oxygen and hydrogen peroxide in order to protect cells from oxidative damage. The catalytic cycle of NiSOD consists of two half-reactions, each initiated by the successive approach of substrate to the metal centre. The first (reductive) phase involves Ni(III) reduction to Ni(II), and the second (oxidative) phase involves the metal reoxidation back to its resting state . NiSOD has a novel SOD fold and assembly, consisting of a hexameric assembly of 4-helix bundles of up-and-down topology, which contains a 9-residue nickel-hook structural motif that is critical for metal binding and catalysis . A gene for a required protease (NiSOD maturation protease; IPR014124 from INTERPRO) is adjacent to the NiSOD gene. ; GO: 0004784 superoxide dismutase activity, 0016151 nickel ion binding, 0016209 antioxidant activity.
Probab=66.47 E-value=9.4 Score=18.83 Aligned_cols=110 Identities=10% Similarity=0.119 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCC----CHH-------HHHHHH----HHCCCCE
Q ss_conf 9999875302330121001111121110689997432030233100122----113-------589999----7359840
Q gi|254780276|r 118 HFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATG----KIE-------LVSEQR----LSCGFDF 182 (292)
Q Consensus 118 ~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~----~~~-------~~~~~~----~~~~~~~ 182 (292)
.+..|...+|+|.-+|| |. +..++.+.+.++.+. +.+.+.-++ ++. |+..+. .....++
T Consensus 14 ~~~~v~AHCD~PCgvYD-Pa--~ari~ae~v~~m~~k---l~~l~~p~s~~s~~W~~~~~~f~R~v~~KE~~a~~~K~e~ 87 (149)
T TIGR02753 14 PKVKVLAHCDLPCGVYD-PA--SARISAEAVLAMTKK---LAALKPPSSLDSAEWADYQNTFSRLVAVKEEQAEETKKEI 87 (149)
T ss_pred CCCEEEEEECCCCCCCC-CC--HHHHHHHHHHHHHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 84447664368987207-60--226899999999999---8625899887668887544343367776178888674652
Q ss_pred EECCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 3201322100124320334455222232110024444431-------178827999999999999999842
Q gi|254780276|r 183 IQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAM-------IRGDYRQALLYQDKLMPLHQALFM 246 (292)
Q Consensus 183 ~v~~G~~~~~~~~~~~G~~G~is~~~n~~P~~~~~l~~~~-------~~gd~~~A~~l~~~l~~l~~~~~~ 246 (292)
.|+.| |-.=.+.+. -||++.--+++.. .+-|.++|+++-+.+..+.+++..
T Consensus 88 ~vlW~-DYfKp~hl~------------~fPeLH~lv~~~~k~~SaaK~~id~~~~~~ll~~v~~~~~iFW~ 145 (149)
T TIGR02753 88 SVLWT-DYFKPPHLE------------KFPELHELVWKALKACSAAKVNIDKAAAQELLQYVEKIHEIFWE 145 (149)
T ss_pred HHHCC-CCCCCHHHC------------CCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 01001-346723330------------38737899999999878712576888999999999999988764
No 410
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=66.42 E-value=7.5 Score=19.53 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=18.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 4300367410278999975343210244320012
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++=+.|+...|.+..++.++.+.++|..+|++.|
T Consensus 47 I~SMPGi~R~Sid~l~~eve~~~~lGI~av~LFp 80 (321)
T PRK09283 47 IPSMPGVYRLSIDLLLKEAEEAVDLGIPAVALFG 80 (321)
T ss_pred CCCCCCCCEECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6899985042899999999999987999899737
No 411
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase; InterPro: IPR012649 This family consists of phosphonopyruvate hydrolase (PPH), an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterised example is from Variovorax sp. Pal2 ..
Probab=66.33 E-value=3.9 Score=21.59 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 41027899997534321024432001234334317889999999875302
Q gi|254780276|r 78 GSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS 127 (292)
Q Consensus 78 ~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~ 127 (292)
.+..-++++.+....+++|+|++++.. ...++|+|..|.+.---..+
T Consensus 161 aG~Gq~ea~rrG~ayeeaGadailihs---~qktPdeilafv~~WPG~~P 207 (290)
T TIGR02321 161 AGLGQDEAVRRGLAYEEAGADAILIHS---KQKTPDEILAFVKAWPGKKP 207 (290)
T ss_pred CCCCHHHHHHHCCCHHHCCCCEEEEEC---CCCCHHHHHHHHHHCCCCCC
T ss_conf 078703565504302221765688631---55774888888772689976
No 412
>TIGR02712 urea_carbox urea carboxylase; InterPro: IPR014084 Members of this family are ATP-dependent urea carboxylases, including characterised members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae (Baker's yeast). The allophanate hydrolase domain of the yeast enzyme is not included in this entry and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from O. sagaranensis was shown to be highly active on acetamide and formamide as well as urea..
Probab=66.23 E-value=11 Score=18.38 Aligned_cols=109 Identities=23% Similarity=0.308 Sum_probs=75.5
Q ss_pred EEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 99986723250108999999986543110123443003674102789999753432102443200123433431788999
Q gi|254780276|r 38 GLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLA 117 (292)
Q Consensus 38 gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~ 117 (292)
.+.+.+++..-.+|..+ ++++++.++-++ =|+.|=|-.| |-..+|+.|++. ||..+- |+.|+|.+
T Consensus 47 A~~Lg~~~A~esYL~~d---kil~~Ak~tGA~--AI~PGYGFLS--ENA~FA~~C~~a---GI~FvG-----Ptpe~ir~ 111 (1226)
T TIGR02712 47 AVCLGGATAAESYLDID---KILAIAKKTGAQ--AIHPGYGFLS--ENAAFAEACEAA---GIVFVG-----PTPEQIRK 111 (1226)
T ss_pred EECCCCCCHHHHHCCHH---HHHHHHHHCCCC--EEECCCCCCC--CCHHHHHHHHHC---CCEEEC-----CCHHHHHH
T ss_conf 26058954132221478---999999755893--8745887235--787799899847---957877-----87066744
Q ss_pred H-----HHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCC
Q ss_conf 9-----999875302330121001111121110689997432030233100122
Q gi|254780276|r 118 H-----FGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATG 166 (292)
Q Consensus 118 ~-----~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~ 166 (292)
| =++||++++.|+. |. ||.--|.|.-.+-+++|.==+++|-+.|
T Consensus 112 fGLKHtAR~lA~~aGVPL~----PG-TgLL~sl~eA~~~A~~IGYPVMlKSTAG 160 (1226)
T TIGR02712 112 FGLKHTARELAEAAGVPLL----PG-TGLLESLDEALEAAKEIGYPVMLKSTAG 160 (1226)
T ss_pred CCCCHHHHHHHHHCCCCCC----CC-CHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 3832568999996688988----85-1558779999999864699547987078
No 413
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.99 E-value=11 Score=18.35 Aligned_cols=103 Identities=10% Similarity=0.063 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHC-CCCEEEECHHHCCCCCCHHHH
Q ss_conf 4430036741027899997534321024432001234334317889999999875302-330121001111121110689
Q gi|254780276|r 70 RVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVS-SPIYIYNNPSRTVIEMDVDTM 148 (292)
Q Consensus 70 r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~-~pi~iYn~P~~~g~~~~~~~l 148 (292)
++|....++..+.+++.+.++.+.+.|+..+=+-. ..+.++-.+..+.|.++.+ ..+++ +. +..++++.-
T Consensus 123 ~i~~~~~~~~~~~e~~~~~~~~~~~~G~~~~KiKv----g~~~~~d~~~v~~vr~~~~~~~l~v-Da----N~~~~~~~A 193 (316)
T cd03319 123 PLETDYTISIDTPEAMAAAAKKAAKRGFPLLKIKL----GGDLEDDIERIRAIREAAPDARLRV-DA----NQGWTPEEA 193 (316)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEC----CCCHHHHHHHHHHHHHHCCCCEEEE-EC----CCCCCHHHH
T ss_conf 74046506899999999999999975987686324----8997999999999996689962998-46----888899999
Q ss_pred HHHHHHCC--HHHHHHCCC--CCHHHHHHHHHHCCCC
Q ss_conf 99743203--023310012--2113589999735984
Q gi|254780276|r 149 AELAATYP--NIVGVKDAT--GKIELVSEQRLSCGFD 181 (292)
Q Consensus 149 ~~L~~~~p--ni~giK~~~--~~~~~~~~~~~~~~~~ 181 (292)
.++++.+. ++..+-+.. .|++.+.++++..+-.
T Consensus 194 ~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~~~~~p 230 (316)
T cd03319 194 VELLRELAELGVELIEQPVPAGDDDGLAYLRDKSPLP 230 (316)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC
T ss_conf 9999975244344430898999999999999968999
No 414
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=65.73 E-value=8 Score=19.32 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 4300367410278999975343210244320012
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++=+.|+...+.+..++.++.+.++|..+|++.|
T Consensus 39 I~SMPGi~R~sid~l~~~v~~~~~lGI~av~LFp 72 (314)
T cd00384 39 ISSMPGVYRLSVDSLVEEAEELADLGIRAVILFG 72 (314)
T ss_pred CCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6899985032899999999999987998899638
No 415
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0004746 riboflavin synthase activity, 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex.
Probab=65.73 E-value=7.6 Score=19.50 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=39.4
Q ss_pred CCEEEEC-----CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHHHHHHHH-----HCCCCCC
Q ss_conf 9899986-----723250108999999986543110123443003674-102789999753432-----1024432
Q gi|254780276|r 36 SGGLVPA-----GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG-SNNTRESVELAQYAH-----SIGADAL 100 (292)
Q Consensus 36 v~gi~~~-----G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~-~~~~~~~i~~a~~a~-----~~Gad~i 100 (292)
.|++..+ |.|-=|-+.+.+-=+.+.+...+. .+||+.|+. ..+++++++++=.-. +.|+++-
T Consensus 66 ~DAVi~LG~VIrG~T~HfeyV~~~A~~gia~~a~~~---~~PV~fGilTt~~~eqA~~raG~~ag~sm~nkG~eaa 138 (148)
T TIGR00114 66 YDAVIALGAVIRGGTPHFEYVADEAAKGIADLALDY---DVPVIFGILTTETIEQAIERAGDKAGVSMENKGVEAA 138 (148)
T ss_pred CCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHC---CCCEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 335885114773796655777778999999999865---9877603328867999999601120121356679999
No 416
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=65.58 E-value=11 Score=18.30 Aligned_cols=132 Identities=9% Similarity=0.066 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHC---CCHHHHHHHHHHHHHCCCCCCCCCCCC------CC-------CHHHHH
Q ss_conf 99999999999769989998672325010---899999998654311012344300367------41-------027899
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESST---LSHEEHCRIIELCVKTVASRVPVMAGI------GS-------NNTRES 85 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~---Ls~~Er~~~~~~~~~~~~~r~pii~gv------~~-------~~~~~~ 85 (292)
.++.+-+++..+-|++.+-+....-..+. ++.++..++.+...+. +-.+++++. ++ .|.+..
T Consensus 10 ~g~~~~~~~a~~iG~~~~qif~~~p~~w~~~~~~~~~~~~~~~~~~~~--~~~~~~~HapY~iNlas~~~~~r~~s~~~l 87 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEG--PSICLSVHAPYLINLASPDKEKREKSIERL 87 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEECCEEECCCCCCHHHHHHHHHHH
T ss_conf 639999999998099899997789887688999989999999999976--997378535600168999889999999999
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCHHH----HHHHHHHHHHHH---CCCCEEEECHHH-CCCCCCHHHHHHHHHHC
Q ss_conf 99753432102443200123433431788----999999987530---233012100111-11211106899974320
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIPYYNKPNRRG----LLAHFGEIATTV---SSPIYIYNNPSR-TVIEMDVDTMAELAATY 155 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P~~~~~~~~~----i~~~~~~i~~~~---~~pi~iYn~P~~-~g~~~~~~~l~~L~~~~ 155 (292)
.+-.+.|+++|+.++.+.|=++...+.++ +.+-++++.+.+ +..+.+=|.+.. +...-+.+.+.++.+.+
T Consensus 88 ~~~l~~a~~lG~~~vv~HpG~~~~~~~~~~~~~~~~~l~~i~~~a~~~~v~l~lEn~ag~g~~~g~~~eel~~i~~~~ 165 (279)
T cd00019 88 KDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLI 165 (279)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHCCHHHHHHHHHHC
T ss_conf 999999998199889967864678888999999999999999871457857998348987762211799999999845
No 417
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=65.20 E-value=11 Score=18.25 Aligned_cols=176 Identities=19% Similarity=0.195 Sum_probs=85.3
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++.+.+.|++-+.+.--.+ .......-.++++..++.+ .+|+-+|=|=-+. +.++..-+.|||-|.+-
T Consensus 32 P~~~a~~~~~~gadel~ivDld~--s~~~~~~~~~~I~~i~~~~--~~pi~vGGGIrs~----e~~~~ll~~GadkVvig 103 (253)
T PRK02083 32 PVELAKRYDEEGADELVFLDITA--SSEGRDTMKDVVERVAEQV--FIPLTVGGGIRSV----EDARRLLRAGADKVSIN 103 (253)
T ss_pred HHHHHHHHHHCCCCEEEEEECCC--CCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCH----HHHHHHHHCCCCEEEEC
T ss_conf 99999999987999899995626--6457741799999999863--9877851762138----98768987798789999
Q ss_pred CCCCCCCCH-HHHHHHHHH--HHHHHCCC-------CEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------CC---
Q ss_conf 234334317-889999999--87530233-------012100111112111068999743203023310------01---
Q gi|254780276|r 104 IPYYNKPNR-RGLLAHFGE--IATTVSSP-------IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------DA--- 164 (292)
Q Consensus 104 ~P~~~~~~~-~~i~~~~~~--i~~~~~~p-------i~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------~~--- 164 (292)
.-.+..|.- .++.+.|-. |.-+.|.- ..+|.+-.+....+++..+.+.+.+.+ +-.|- |.
T Consensus 104 s~a~~~p~~i~~~~~~~G~q~Iv~siD~~~~~~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~g-~geil~tdI~rDG~~~ 182 (253)
T PRK02083 104 SAAVADPELITELADRFGSQCIVVAIDAKRDGEPGRWEVFTHGGRKPTGIDAVEWAKEVQELG-AGEILLTSMDQDGTKN 182 (253)
T ss_pred CHHHHCCCHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCC-CCEEEEEEECCCCCCC
T ss_conf 846538535578897469835999999887376871899980784125523999999987569-8789999885558667
Q ss_pred CCCHHHHHHHHHHCCCCEEECCCCCC--CHHHHHH-HCCCCCCCCCC
Q ss_conf 22113589999735984032013221--0012432-03344552222
Q gi|254780276|r 165 TGKIELVSEQRLSCGFDFIQLSGEDS--SALGFNA-HGGVGCISVTA 208 (292)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~v~~G~~~--~~~~~~~-~G~~G~is~~~ 208 (292)
..|.+.+..+.+..+-++....|... .+...+. .|.+|++.|.+
T Consensus 183 G~d~~l~~~i~~~~~iPiI~sGGv~s~~di~~~l~~~~i~gv~~G~~ 229 (253)
T PRK02083 183 GYDLELTRAVRDAVSVPVIASGGAGNLEHFAEAFTEGGADAALAASV 229 (253)
T ss_pred CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEHHH
T ss_conf 88999999999757999999889999999999998679809987127
No 418
>PRK13753 dihydropteroate synthase; Provisional
Probab=65.02 E-value=11 Score=18.23 Aligned_cols=119 Identities=14% Similarity=0.164 Sum_probs=72.2
Q ss_pred EEECCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCC---CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 011120177389888-689999999999997699899986723---2501089999999865431101234430036741
Q gi|254780276|r 4 GSIPALITPFTKGNL-IDEDAFVEHIEWQITEGSGGLVPAGTT---GESSTLSHEEHCRIIELCVKTVASRVPVMAGIGS 79 (292)
Q Consensus 4 Gi~~~~~TPf~~d~~-iD~~~~~~~i~~l~~~gv~gi~~~G~t---GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~ 79 (292)
||+...+-=|-+.|. .|.+...++++.+++.|++-|=++|-. |- ...|.+|-.+=+.-+++....+.+.+ .+
T Consensus 6 GIlNvTPDSFsDgg~~~~~~~a~~~a~~mi~~GAdIIDIGgeSTRPga-~~vs~eeE~~Rv~pvi~~l~~~~~~i-SI-- 81 (279)
T PRK13753 6 GILNLTEDSFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDA-RPVSPADEIRRIAPLLDALSDQMHRV-SI-- 81 (279)
T ss_pred EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHCCCE-EE--
T ss_conf 998489999988875789999999999999879969997987789999-80899999999999999998608967-99--
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 027899997534321024432001234334317889999999875302330121001
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
+|... +-++.|-++||+.|-=+. ...+.++ +..+ ...+.|+++-+.+
T Consensus 82 -DT~~~-~Va~~Al~~Ga~iINDIs----G~~d~~m---~~~v-a~~~~~~vlMH~~ 128 (279)
T PRK13753 82 -DSFQP-ETQRYALKRGVGYLNDIQ----GFPDPAL---YPDI-AEADCRLVVMHSA 128 (279)
T ss_pred -ECCCH-HHHHHHHHCCCCEEECCC----CCCCHHH---HHHH-HHHCCCEEEEECC
T ss_conf -78859-999999983977884501----0338368---9999-9719988998268
No 419
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=64.97 E-value=11 Score=18.22 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=8.1
Q ss_pred HHHHHHHHCCCCEEEECCCCC
Q ss_conf 999999976998999867232
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTG 46 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tG 46 (292)
..++..++.+++.+.+....|
T Consensus 41 ~~~~~a~e~~ad~i~vSsl~g 61 (128)
T cd02072 41 EFIDAAIETDADAILVSSLYG 61 (128)
T ss_pred HHHHHHHHCCCCEEEECCCCC
T ss_conf 999999873999999823202
No 420
>pfam00490 ALAD Delta-aminolevulinic acid dehydratase.
Probab=64.96 E-value=8.7 Score=19.06 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 4300367410278999975343210244320012
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++=+.|+...|.+..++.++.+.++|..+|++.|
T Consensus 45 I~SMPGi~R~sid~l~~~v~~~~~lGI~av~LFp 78 (322)
T pfam00490 45 IPSMPGVYRLSVDLLVKEVEEAVELGIPAVILFG 78 (322)
T ss_pred CCCCCCCEEECHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 6899985144899999999999977998799844
No 421
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=64.91 E-value=11 Score=18.21 Aligned_cols=39 Identities=13% Similarity=-0.083 Sum_probs=23.6
Q ss_pred HHHHHHHHHHCCCCEE-ECCCC---CCCHHHHHHHCCCCCCCC
Q ss_conf 1358999973598403-20132---210012432033445522
Q gi|254780276|r 168 IELVSEQRLSCGFDFI-QLSGE---DSSALGFNAHGGVGCISV 206 (292)
Q Consensus 168 ~~~~~~~~~~~~~~~~-v~~G~---~~~~~~~~~~G~~G~is~ 206 (292)
.+.+.++....++++. +.+|. ....+.++.+|++++..+
T Consensus 260 ~~~L~ei~~av~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~ig 302 (360)
T COG1304 260 ADSLPEIVEAVGDRIEVIADGGIRSGLDVAKALALGADAVGIG 302 (360)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHH
T ss_conf 9999999997188717996388787789999999377654525
No 422
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=64.80 E-value=11 Score=18.20 Aligned_cols=39 Identities=10% Similarity=0.244 Sum_probs=14.5
Q ss_pred HHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHCC
Q ss_conf 98654311012344300367-4102789999753432102
Q gi|254780276|r 58 RIIELCVKTVASRVPVMAGI-GSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 58 ~~~~~~~~~~~~r~pii~gv-~~~~~~~~i~~a~~a~~~G 96 (292)
+.++.+.+.+++++.+++-+ ...++.+++++++..++.|
T Consensus 170 ~~v~avR~~~G~~~~l~vDan~~~~~~~Ai~~~~~l~~~~ 209 (352)
T cd03328 170 DRVAAARRAIGPDAELFVDANGAYSRKQALALARAFADEG 209 (352)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999974889539867876889999999999842306
No 423
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=64.73 E-value=12 Score=18.19 Aligned_cols=23 Identities=4% Similarity=-0.116 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 68999999999999769989998
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVP 41 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~ 41 (292)
+..+.=.++++.|-+.|++.|=+
T Consensus 21 ~s~e~Ki~Ia~~Ld~lGv~~IE~ 43 (409)
T COG0119 21 FSVEEKIRIAKALDDLGVDYIEA 43 (409)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 78899999999999769987997
No 424
>pfam01136 Peptidase_U32 Peptidase family U32.
Probab=64.56 E-value=12 Score=18.17 Aligned_cols=89 Identities=18% Similarity=0.303 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999999769989998672325010899999998654311012344300367410278999975343210244320
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALL 101 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~ 101 (292)
+.++++++.+.+.|+|+|.+.-- -+++.+.+.. ..+|+.+++..+-++. +-++..++.|+..+.
T Consensus 2 ~~l~~~l~~l~~~gvDaiiv~D~-------------g~~~~~~~~~-p~l~ih~s~~~nv~N~--~~~~~~~~~G~~rvv 65 (232)
T pfam01136 2 EALREYLEKLAEIGVDAVIVADP-------------GVLRLARERF-PDLPIHASTQANVTNS--EALRFLAELGAKRVV 65 (232)
T ss_pred HHHHHHHHHHHHCCCCEEEEECH-------------HHHHHHHHHC-CCCCEEEEECCCCCCH--HHHHHHHHCCCCEEE
T ss_conf 06999999999769999998099-------------9999999868-9987899605557789--999999986995796
Q ss_pred EECCCCCCCCHHHHHHHHHHHHHHH-C--CCCEEEE
Q ss_conf 0123433431788999999987530-2--3301210
Q gi|254780276|r 102 VVIPYYNKPNRRGLLAHFGEIATTV-S--SPIYIYN 134 (292)
Q Consensus 102 v~~P~~~~~~~~~i~~~~~~i~~~~-~--~pi~iYn 134 (292)
+.+ .+|-++|. +|++.+ + +.+++|.
T Consensus 66 lsr----Elsl~ei~----~i~~~~~~~e~EvfvhG 93 (232)
T pfam01136 66 LAR----ELSLDEIK----EIAEKLPDVELEVFVHG 93 (232)
T ss_pred ECC----CCCHHHHH----HHHHHCCCCEEEEEEEC
T ss_conf 561----08899999----99983899818999983
No 425
>pfam06277 EutA Ethanolamine utilisation protein EutA. This family consists of several bacterial EutA ethanolamine utilisation proteins. The EutA protein is thought to protect the lyase (EutBC) from inhibition by CNB12.
Probab=64.48 E-value=8.2 Score=19.27 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCC
Q ss_conf 120177389888689999999999997-6998
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQIT-EGSG 37 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~-~gv~ 37 (292)
+...||+.++..||.++++++|+..+. +|++
T Consensus 48 ~I~fTP~~~~~~Id~~~l~~~i~~~Y~~Agi~ 79 (473)
T pfam06277 48 PIYFTPLLSQTEIDAEAVKEIIREEYRKAGIA 79 (473)
T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 73103667867338999999999999984999
No 426
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=64.38 E-value=12 Score=18.14 Aligned_cols=157 Identities=15% Similarity=0.151 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCH--HCCCHHHHHHHHHHHHHCCCCCCCCCCCC------------CCC-----HHH
Q ss_conf 99999999997699899986723250--10899999998654311012344300367------------410-----278
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPAGTTGES--STLSHEEHCRIIELCVKTVASRVPVMAGI------------GSN-----NTR 83 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~G~tGE~--~~Ls~~Er~~~~~~~~~~~~~r~pii~gv------------~~~-----~~~ 83 (292)
.++.-++..-+.|.+||=+.+..-.. ..++.++.+++-+.. +..+ ++|+.-+ ... +.+
T Consensus 14 ple~a~~~aa~lGydgVEi~~~~ph~~~~~~~~~~~~~ik~l~-~~~g--l~v~~~~p~~~~~~~~l~~~d~~~R~~~i~ 90 (276)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALA-QTYQ--MPIIGYTPETNGYPYNMMLGDEHMRRESLD 90 (276)
T ss_pred CHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHH-HHCC--CEEEEECCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999849998997378765467654655799999999-9809--868995532137765336798789899999
Q ss_pred HHHHHHHHHHHCCCCCCCEECCC--CCCCCH---HHHHHHHHHHHHHH---CCCCEEEE-CHHHCCCCCCHHHHHHHHHH
Q ss_conf 99997534321024432001234--334317---88999999987530---23301210-01111121110689997432
Q gi|254780276|r 84 ESVELAQYAHSIGADALLVVIPY--YNKPNR---RGLLAHFGEIATTV---SSPIYIYN-NPSRTVIEMDVDTMAELAAT 154 (292)
Q Consensus 84 ~~i~~a~~a~~~Gad~i~v~~P~--~~~~~~---~~i~~~~~~i~~~~---~~pi~iYn-~P~~~g~~~~~~~l~~L~~~ 154 (292)
...+.+..|+++|+..+++.++. +..+.+ +...+.++++++.+ ++.+.+=+ +|..++..-+.+...++.+.
T Consensus 91 ~~k~~id~A~~Lga~~v~v~~~~~~~~~~~~~~w~~~~e~l~~l~~~A~~~Gv~l~lE~l~~~e~~li~~~~~~~~~~~~ 170 (276)
T PRK09856 91 MIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCNANDVLHALAL 170 (276)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHCCHHHHHHHHHH
T ss_conf 99999999998499849993687778889799999999999999999997399899951761114200689999999985
Q ss_pred C--CHHHHHHCCCC-CH--HHHHHHHHHCCCCE
Q ss_conf 0--30233100122-11--35899997359840
Q gi|254780276|r 155 Y--PNIVGVKDATG-KI--ELVSEQRLSCGFDF 182 (292)
Q Consensus 155 ~--pni~giK~~~~-~~--~~~~~~~~~~~~~~ 182 (292)
+ ||+...-|... .. +...+..+..++.+
T Consensus 171 v~~~~~~~~lD~~h~~~~~~~~~~~~~~~g~~l 203 (276)
T PRK09856 171 VPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKL 203 (276)
T ss_pred CCCCCEEEEEECHHHHHCCCCHHHHHHHHCCCE
T ss_conf 799864899854137553899999999858874
No 427
>TIGR00430 Q_tRNA_tgt queuine tRNA-ribosyltransferase; InterPro: IPR004803 The queuine tRNA-ribosyltransferase (tgt) 2.4.2.29 from EC catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The archaea have a closely related enzyme (IPR004804 from INTERPRO) that catalyses a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes. ; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0008616 queuosine biosynthetic process.
Probab=64.26 E-value=11 Score=18.43 Aligned_cols=40 Identities=25% Similarity=0.529 Sum_probs=16.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCEECCC--CCCCCH
Q ss_conf 43003674102789999753432102-4432001234--334317
Q gi|254780276|r 71 VPVMAGIGSNNTRESVELAQYAHSIG-ADALLVVIPY--YNKPNR 112 (292)
Q Consensus 71 ~pii~gv~~~~~~~~i~~a~~a~~~G-ad~i~v~~P~--~~~~~~ 112 (292)
+|+.+=||...|-..+.-+. +++.+ |. +++..-| |.+|.+
T Consensus 26 TP~FMPVGTlgtvKgl~~~~-l~~~~Ga~-~iLaNTYHL~LRPG~ 68 (415)
T TIGR00430 26 TPVFMPVGTLGTVKGLTPEE-LKATGGAE-LILANTYHLYLRPGE 68 (415)
T ss_pred CCCCCCHHHHHHCCCCCHHH-HHHHCCCE-EEEECHHHHHCCCHH
T ss_conf 67647513797304899899-98743846-744021333136818
No 428
>pfam02219 MTHFR Methylenetetrahydrofolate reductase. This family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from bacteria and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The structure for this domain is known to be a TIM barrel.
Probab=64.21 E-value=12 Score=18.12 Aligned_cols=192 Identities=11% Similarity=0.047 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999997699899986723250108999999986543110123443003674--10278999975343210244
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIG--SNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~--~~~~~~~i~~a~~a~~~Gad 98 (292)
.+.+...++.|.+.+++.+-|.=+.|-.. ..--..++....+.. .++++++.+ +.+-.+.......+..+|+.
T Consensus 25 ~~~l~~~~~~L~~~~pdfisVT~ga~g~~---r~~t~~~~~~i~~~~--gi~~i~Hltcrd~n~~~l~~~L~~~~~~GI~ 99 (286)
T pfam02219 25 ERNLWERIDRMSALGPLFVSVTWGAGGST---RDRTSSIAKVIQQDT--GLEACMHLTCTDMNKEELDDALEDAKALGIR 99 (286)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCC---HHHHHHHHHHHHHHH--CCCEEEEECCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999998548999899267989965---454999999999860--9982267464779899999999999985988
Q ss_pred CCCEE---CCCC---CC------CCHHHHHHHHHHHH-HHHCCCCEEEECHHHC--CCCCCHHHHHHHHHHCCH--HHHH
Q ss_conf 32001---2343---34------31788999999987-5302330121001111--121110689997432030--2331
Q gi|254780276|r 99 ALLVV---IPYY---NK------PNRRGLLAHFGEIA-TTVSSPIYIYNNPSRT--VIEMDVDTMAELAATYPN--IVGV 161 (292)
Q Consensus 99 ~i~v~---~P~~---~~------~~~~~i~~~~~~i~-~~~~~pi~iYn~P~~~--g~~~~~~~l~~L~~~~pn--i~gi 161 (292)
.++++ +|.. +. .+..+++++.++-. +..++.+..| |..- -.++. ..+.+|.+++.. --.+
T Consensus 100 niLaLrGD~p~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~f~igva~y--Pe~hp~a~~~~-~di~~L~~Ki~aGA~f~i 176 (286)
T pfam02219 100 NILALRGDPPKGGDHWEKPEGGFKYALDLVRLIRQEYGDYFDIGVAAY--PEGHPEAKSWQ-ADLKYLKEKVDAGADFII 176 (286)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC--CCCCCCCCCHH-HHHHHHHHHHHCCCHHHH
T ss_conf 587614889887777789986633399999999973598777554558--87786512199-999999999984610536
Q ss_pred HCCCCCHHHHHHHH---HHCCCCEEECCCCCCCH-HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 00122113589999---73598403201322100-12432033445522223211002444443117
Q gi|254780276|r 162 KDATGKIELVSEQR---LSCGFDFIQLSGEDSSA-LGFNAHGGVGCISVTANVVPRICAEFQQAMIR 224 (292)
Q Consensus 162 K~~~~~~~~~~~~~---~~~~~~~~v~~G~~~~~-~~~~~~G~~G~is~~~n~~P~~~~~l~~~~~~ 224 (292)
-.-..|.+.+.+.+ +..+-++-++.|--... +..... .. -++| --.|+.+.+-.+.+..
T Consensus 177 TQ~~fd~~~~~~f~~~~~~~Gi~~PIi~GI~Pi~s~~~~~~-~~-~~~G--i~iP~~l~~~l~~~~~ 239 (286)
T pfam02219 177 TQLFFDVDNFLRFVDRCRAAGIDIPIIPGIMPITSYKSLKR-IA-KLSG--VSIPQELIDRLEPIKD 239 (286)
T ss_pred HHHEECHHHHHHHHHHHHHCCCCCEEECCCEEECCHHHHHH-HH-HHCC--CCCCHHHHHHHHHCCC
T ss_conf 43532499999999999974998204215211146889999-99-7359--9894999999985479
No 429
>TIGR03617 F420_MSMEG_2256 probable F420-dependent oxidoreductase, MSMEG_2256 family. Coenzyme F420 has a limited phylogenetic distribution, including methanogenic archaea, Mycobacterium tuberculosis and related species, Colwellia psychrerythraea 34H, Rhodopseudomonas palustris HaA2, and others. Partial phylogenetic profiling identifies protein subfamilies, within the larger family called luciferase-like monooxygenanases (pfam00296), that appear only in F420-positive genomes and are likely to be F420-dependent. This model describes one such subfamily, exemplified by MSMEG_2256 from Mycobacterium smegmatis.
Probab=64.12 E-value=11 Score=18.38 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHH---HHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 10024444431178827999999-99999999984268938999999---986988998767888898798999999999
Q gi|254780276|r 212 PRICAEFQQAMIRGDYRQALLYQ-DKLMPLHQALFMEPAVCCVKYAL---SRLGRNVSLAVRSPMVSTLEKDTMIAIDQA 287 (292)
Q Consensus 212 P~~~~~l~~~~~~gd~~~A~~l~-~~l~~l~~~~~~~~~~~~~K~~l---~~~G~~~~~~~R~Pl~~~~~~e~~~~i~~~ 287 (292)
.+...++.+...+||++++.++. +.+ .+.+...+.+.-+..-+ .-.|.+ .-.+-.|. ++ ++|..+.+-++
T Consensus 242 ~~~~~~i~~~~~~g~~~~~~~~vpdE~---vd~~~~~Gtpee~~~rl~~~~~~GvD-~i~l~~p~-~~-~~e~~~~~~~~ 315 (318)
T TIGR03617 242 GDLQPELHRLSKQGRWAEMGGLIDDEV---LAAFAVVGPPEELAAALRARFGGLAD-RVSLYFPY-PP-GPEFVRALLDA 315 (318)
T ss_pred HHHHHHHHHHHHCCCHHHHHHCCCHHH---HHHHCCCCCHHHHHHHHHHHHHCCCC-EEEEECCC-CC-CHHHHHHHHHH
T ss_conf 235799999997879988883399999---97761445899999999999967999-89996899-98-86899999998
Q ss_pred H
Q ss_conf 9
Q gi|254780276|r 288 L 288 (292)
Q Consensus 288 l 288 (292)
|
T Consensus 316 ~ 316 (318)
T TIGR03617 316 L 316 (318)
T ss_pred H
T ss_conf 5
No 430
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=64.04 E-value=12 Score=18.10 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCHHHHH---HHHHHHHHHC
Q ss_conf 8999999999999769989998672325010899999998654311012-34430036741027899---9975343210
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA-SRVPVMAGIGSNNTRES---VELAQYAHSI 95 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~-~r~pii~gv~~~~~~~~---i~~a~~a~~~ 95 (292)
..+..+++++...+.|.+.+|..=+.-|. +.++..+-++...+.++ -.+.+++-|+....+.. .+-....+++
T Consensus 11 ~~e~~~~yi~~a~~~Gf~~iFTSL~i~e~---~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~l 87 (357)
T pfam05913 11 TFEEDKAYIKLAAKLGFTRIFTSLHIPED---DKEEYLERLKELIKYAKELGMEVIADISPSVLKQLGISYDDLSFLKEL 87 (357)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCC---CHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCCHHHHHHHHHC
T ss_conf 87999999999998699899604775788---879999999999999998799999987989998819997889999977
Q ss_pred CCCCCCEE
Q ss_conf 24432001
Q gi|254780276|r 96 GADALLVV 103 (292)
Q Consensus 96 Gad~i~v~ 103 (292)
|++++-+=
T Consensus 88 Gi~glRlD 95 (357)
T pfam05913 88 GVTGLRLD 95 (357)
T ss_pred CCCEEEEC
T ss_conf 99899977
No 431
>PRK09247 ATP-dependent DNA ligase; Validated
Probab=63.82 E-value=11 Score=18.24 Aligned_cols=12 Identities=8% Similarity=0.326 Sum_probs=4.9
Q ss_pred CCCCCCHHHHHH
Q ss_conf 367410278999
Q gi|254780276|r 75 AGIGSNNTRESV 86 (292)
Q Consensus 75 ~gv~~~~~~~~i 86 (292)
.||+.-...+++
T Consensus 150 iGvs~~lv~~Al 161 (537)
T PRK09247 150 VGVSARLVTRAL 161 (537)
T ss_pred CCCHHHHHHHHH
T ss_conf 031177999999
No 432
>PRK10799 putative hydrolase-oxidase; Provisional
Probab=63.69 E-value=12 Score=18.07 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHH-HHHHHHHHH--CCCCEEEECHH
Q ss_conf 99753432102443200123433431788999-999987530--23301210011
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIPYYNKPNRRGLLA-HFGEIATTV--SSPIYIYNNPS 137 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~-~~~~i~~~~--~~pi~iYn~P~ 137 (292)
.+-.+.|.+.|+|.+++.-|++|++...-+.. +++.+..-. ++.++-++.|-
T Consensus 46 ~~vi~eAi~~~aDliitHHpl~~~~~~~~~~g~~~~rl~~Li~~~I~lya~Ht~l 100 (247)
T PRK10799 46 QALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPL 100 (247)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCH
T ss_conf 9999999985999999867400278877567837799999997896689841572
No 433
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=63.65 E-value=12 Score=18.05 Aligned_cols=103 Identities=15% Similarity=0.126 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHCCCCE-----EEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH--HHHHHHHHHH
Q ss_conf 8999999999999769989-----99867232501089999999865431101234430036741027--8999975343
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGG-----LVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT--RESVELAQYA 92 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~g-----i~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~--~~~i~~a~~a 92 (292)
|.+-+.+..+|-- .|-.| ++-.+..|-.+--|.++-+++++.....-+.-.+.|-..|+.-| +|.+++.+.|
T Consensus 56 D~e~y~~~~~~~~-~g~~g~~~~CFa~A~~ag~vYEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a 134 (475)
T COG1964 56 DAELYYRFARWEF-EGKFGVNNECFAYAEEAGYIYEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIA 134 (475)
T ss_pred CHHHHHHHHHHCC-CCCCCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHHHHH
T ss_conf 4999999986125-687687786757643268614777999999999998538999832672289866435589999977
Q ss_pred HHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 2102443200123433431788999999987530
Q gi|254780276|r 93 HSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV 126 (292)
Q Consensus 93 ~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~ 126 (292)
++.|++-|++..- ........+|.+++.++-
T Consensus 135 ~e~g~~hVqinTn---GirlA~~~~~~~~l~~ag 165 (475)
T COG1964 135 REEGYDHVQLNTN---GIRLAFDPEYVKKLREAG 165 (475)
T ss_pred HHCCCCEEEECCC---CEEECCCHHHHHHHHHCC
T ss_conf 6568618998257---502013778998898658
No 434
>cd06824 PLPDE_III_Yggs_like Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins. This subfamily contains mainly uncharacterized proteobacterial proteins with similarity to the hypothetical Escherichia coli protein YggS, a homolog of yeast YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. Like yeast YBL036c, Yggs is a single domain monomeric protein with a typical TIM-barrel fold. Its structure, which shows a covalently-bound PLP cofactor, is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. YggS has not been characterized extensively and its biological function is still unkonwn.
Probab=63.61 E-value=12 Score=18.13 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 882799999999999999
Q gi|254780276|r 225 GDYRQALLYQDKLMPLHQ 242 (292)
Q Consensus 225 gd~~~A~~l~~~l~~l~~ 242 (292)
.|.++.+..+.++..+.+
T Consensus 167 ~d~~~~r~~F~~l~~l~~ 184 (224)
T cd06824 167 DDEAAQRAAFKRLRQLFD 184 (224)
T ss_pred CCHHHHHHHHHHHHHHHH
T ss_conf 885789999999999999
No 435
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=63.55 E-value=12 Score=18.04 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCC-CCCHHHH---HHHHHHHHHHH-CCCCEEEEC-HHHCC
Q ss_conf 3003674102789999753432102443200123433-4317889---99999987530-233012100-11111
Q gi|254780276|r 72 PVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYN-KPNRRGL---LAHFGEIATTV-SSPIYIYNN-PSRTV 140 (292)
Q Consensus 72 pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~-~~~~~~i---~~~~~~i~~~~-~~pi~iYn~-P~~~g 140 (292)
..++|+-..+.+.+++.++...+.|+| ++++|.+. ..+++++ ++|-.++...- .-|+.+|++ |...|
T Consensus 231 k~L~G~~dYdv~kvle~aE~i~~a~id--vlIaPv~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQkyipyk~G 303 (414)
T COG2100 231 KMLAGRKDYDVKKVLEVAEYIANAGID--VLIAPVWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKYIPYKFG 303 (414)
T ss_pred HHHCCCCCCCHHHHHHHHHHHHHCCCC--EEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCC
T ss_conf 774284011789999999999867988--8983144278681778999999998488877998530775540206
No 436
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=63.44 E-value=12 Score=18.03 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=30.1
Q ss_pred CCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCC-CCCC---CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 6998999867232501089999999865431101-2344---30036741027899997534321024432001
Q gi|254780276|r 34 EGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTV-ASRV---PVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 34 ~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~-~~r~---pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
..|+|+.+.|. .+.++-.++.+.-.-.+ -+|. .-+..|...+..-+...++|.-+.|..-+..+
T Consensus 51 ~~VDGiI~~~~------~~~~~~~~l~~~~~PvV~id~~~~~~~~~~V~~Dn~~~~~~a~~~Li~~Ghr~I~~i 118 (270)
T cd01544 51 EDVDGIIAIGK------FSQEQLAKLAKLNPNLVFVDSNPAPDGFDSVVPDFEQAVEKALDYLLELGHTRIGFI 118 (270)
T ss_pred CCCCEEEEECC------CCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 28999999289------999999999962998999927678889998998889999999999997799869999
No 437
>pfam07302 AroM AroM protein. This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL. The function of this family is unknown.
Probab=63.36 E-value=12 Score=18.02 Aligned_cols=27 Identities=33% Similarity=0.233 Sum_probs=11.3
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCC
Q ss_conf 9999999976998999867232501089
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLS 52 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls 52 (292)
...++.+-+.|++-++.+. ||+|..|+
T Consensus 77 q~~i~~Le~~G~d~ilLlC-TG~F~~l~ 103 (221)
T pfam07302 77 QQVIEKLDKEGVDVILLLC-TGEFPKLS 103 (221)
T ss_pred HHHHHHHHHCCCCEEEEEE-CCCCCCCC
T ss_conf 9999999867998999961-47789865
No 438
>PRK12999 pyruvate carboxylase; Reviewed
Probab=63.07 E-value=12 Score=17.98 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 68999999999999769989998672325010899999998654311012344300367410278999975343210244
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
-+.+-+-++.+.+.+.|++.|.+=-.+| .|+...-.+++....+.. .+||=.++-++ .--.+.-.-.|.++|+|
T Consensus 689 ~~l~yy~~~a~~l~~~G~~~l~IKDMAG---Ll~P~aa~~LV~aLk~~~--~lPIhlHtHdT-sG~~~at~laA~eAGvD 762 (1147)
T PRK12999 689 YDLDYYVDLAKELEAAGAHILAIKDMAG---LLKPAAAYKLVSALKEEV--DLPIHLHTHDT-SGNGLATYLAAAEAGVD 762 (1147)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCC---CCCHHHHHHHHHHHHHHC--CCCEEEECCCC-CCHHHHHHHHHHHCCCC
T ss_conf 6699999999999976898899714454---688799999999998616--98459843678-85589999999985999
Q ss_pred CCCE
Q ss_conf 3200
Q gi|254780276|r 99 ALLV 102 (292)
Q Consensus 99 ~i~v 102 (292)
.|=+
T Consensus 763 iVD~ 766 (1147)
T PRK12999 763 IVDV 766 (1147)
T ss_pred EEEC
T ss_conf 8963
No 439
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=63.04 E-value=12 Score=17.98 Aligned_cols=124 Identities=10% Similarity=0.078 Sum_probs=73.1
Q ss_pred CCCCCCCCC-CCCCCHHHHHHHHHHHH-HCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 120177389-88868999999999999-7699899986723250108999999986543110123443003674102789
Q gi|254780276|r 7 PALITPFTK-GNLIDEDAFVEHIEWQI-TEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRE 84 (292)
Q Consensus 7 ~~~~TPf~~-d~~iD~~~~~~~i~~l~-~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~ 84 (292)
++.+||-.. +++-.+..-.+...... ....+-+|++-|.-|+|.-+. .+.+.+..++.-.+=.|.|+..|.+
T Consensus 2 ~~~~~p~~~~~~~~~W~~~h~~~~~~~~~~~~~ivf~GdSit~~W~~~~------~~~w~~~f~~~~~iNrGigGd~t~~ 75 (214)
T cd01820 2 AAAPTPVDDLDGDPRWMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTG------LEVWRELYAPLHALNFGIGGDRTQN 75 (214)
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHCCCC------HHHHHHHCCCCCEEECCCCCHHHHH
T ss_conf 8778687555677069999999999710289999998165875123235------2669986689875642516022777
Q ss_pred HHHHHHHHH--HCCCCCCCEECC---CCCCCCHHHHHHHHHHHHHHH-----CCCCEEEECH
Q ss_conf 999753432--102443200123---433431788999999987530-----2330121001
Q gi|254780276|r 85 SVELAQYAH--SIGADALLVVIP---YYNKPNRRGLLAHFGEIATTV-----SSPIYIYNNP 136 (292)
Q Consensus 85 ~i~~a~~a~--~~Gad~i~v~~P---~~~~~~~~~i~~~~~~i~~~~-----~~pi~iYn~P 136 (292)
++.+.++.. ....+.|.++.= .-...+.+++.+-+++|.+.+ +.+|++.-..
T Consensus 76 vL~Rl~~~~l~~~~Pk~Vvl~iGtNDl~~~~~~~~i~~~i~~iv~~ir~~~P~t~I~l~si~ 137 (214)
T cd01820 76 VLWRLENGELDGVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLLGLL 137 (214)
T ss_pred HHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 99985231003589988999932355468989999999999999999987899879999500
No 440
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=62.96 E-value=12 Score=17.97 Aligned_cols=88 Identities=23% Similarity=0.251 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHH-HCCCCCCCEECCCCCCC----------------CHHHHHHHHHHHHHHHCC-CCEEEE
Q ss_conf 003674102789999753432-10244320012343343----------------178899999998753023-301210
Q gi|254780276|r 73 VMAGIGSNNTRESVELAQYAH-SIGADALLVVIPYYNKP----------------NRRGLLAHFGEIATTVSS-PIYIYN 134 (292)
Q Consensus 73 ii~gv~~~~~~~~i~~a~~a~-~~Gad~i~v~~P~~~~~----------------~~~~i~~~~~~i~~~~~~-pi~iYn 134 (292)
|++|-| .++.|++.-++- +-|-|.|++.+|.|.-. +++--.+ +..++++.+- .+++--
T Consensus 77 I~vGnG---SdElI~~l~raf~~pg~d~vl~~~PtF~~Y~~~a~~~g~~~~~vpl~~~f~~d-~~~~~~~~~~~klvfic 152 (355)
T PRK01688 77 VLVSRG---ADEGIELLIRAFCEPGKDAILYCPPTYGMYSVSAETIGVECRTVPTLENWQLD-LPAISDNLDGVKVVYVC 152 (355)
T ss_pred EEEECC---HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCC-HHHHHHHCCCCCEEEEC
T ss_conf 998168---99999999999855899749977887689999998679579995276576869-99999751588889986
Q ss_pred CH-HHCCCCCCHHHHHHHHHHCCH--HHHHHCC
Q ss_conf 01-111121110689997432030--2331001
Q gi|254780276|r 135 NP-SRTVIEMDVDTMAELAATYPN--IVGVKDA 164 (292)
Q Consensus 135 ~P-~~~g~~~~~~~l~~L~~~~pn--i~giK~~ 164 (292)
+| ..||..++.+.+.++++..+. ++-+-|+
T Consensus 153 NPNNPTG~~~~~~~l~~l~~~~~~~~lvVvDEA 185 (355)
T PRK01688 153 SPNNPTGNLINPQDLRTLLELTRGKAIVVADEA 185 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECH
T ss_conf 899987764689999999975888866885541
No 441
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.88 E-value=12 Score=17.96 Aligned_cols=108 Identities=7% Similarity=0.062 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 868999999999999769989998672325010899999998654-3110123443003674102789999753432102
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-CVKTVASRVPVMAGIGSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~G 96 (292)
.=|.+.-+++++.+.+.+++|+.+.+..-+- ....++..-.-. .++... .-+-+..|...+..-....+++..+.|
T Consensus 39 ~~~~~~e~~~l~~l~~~~vdGiI~~~~~~~~--~~~~~~~~~~PvV~i~~~~-~~~~~~~V~~D~~~a~~~a~~~L~~~G 115 (269)
T cd06288 39 GGDDELEAEAVEALLDHRVDGIIYATMYHRE--VTLPPELLSVPTVLLNCYD-ADGALPSVVPDEEQGGYDATRHLLAAG 115 (269)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCCCCH--HHHHHHHCCCCEEEECCCC-CCCCCCEEEECHHHHHHHHHHHHHHHC
T ss_conf 9998999999999994799999996788866--3599986699999976746-899988899778999999999999848
Q ss_pred CCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 4432001-23433431788999999987530233
Q gi|254780276|r 97 ADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 97 ad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
..-+..+ .|.-.. +..+-.+-|++.+...+++
T Consensus 116 ~~~i~~i~~~~~~~-~~~~R~~gf~~a~~~~~i~ 148 (269)
T cd06288 116 HRRIAFINGEPWML-AAKDRLKGYRQALAEAGIP 148 (269)
T ss_pred CCCEEEEECCCCCH-HHHHHHHHHHHHHHHCCCC
T ss_conf 87557874898875-7999999999999976998
No 442
>PRK06207 aspartate aminotransferase; Provisional
Probab=62.67 E-value=12 Score=17.93 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCCCH-----HHHHHHHHHHHHCCCCEEEECCCCCCHHCC-CHHHHHHHHHHHHHCCCCCC----CCCCCCCCCHHHHHH
Q ss_conf 88689-----999999999997699899986723250108-99999998654311012344----300367410278999
Q gi|254780276|r 17 NLIDE-----DAFVEHIEWQITEGSGGLVPAGTTGESSTL-SHEEHCRIIELCVKTVASRV----PVMAGIGSNNTRESV 86 (292)
Q Consensus 17 ~~iD~-----~~~~~~i~~l~~~gv~gi~~~G~tGE~~~L-s~~Er~~~~~~~~~~~~~r~----pii~gv~~~~~~~~i 86 (292)
|+.|+ +.+.+..+-.++.|-++.. .+. ..+=|+.+.+...+..+-.+ -|++..| ..+++
T Consensus 47 G~pD~~~PtP~~i~~~~~~~~~~g~~~Yt--------~~~G~~eLReAia~~~~~~~g~~~d~~d~Iivt~G---~~~al 115 (406)
T PRK06207 47 GDVDAHEPTPGSLELFSQGVERGGVQAYT--------EYRGDLEIRELVAARLAEFTGAPVDARDGLIITPG---TQGAL 115 (406)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCC--------CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCC---HHHHH
T ss_conf 99999999869999999999738998899--------98672999999999999986899998786998587---79999
Q ss_pred HHHHHHHHCCCCCCCEECCCCCCCCHHHHHHH-----------------------HHHHHHHH--CCCCEEEECHHH-CC
Q ss_conf 97534321024432001234334317889999-----------------------99987530--233012100111-11
Q gi|254780276|r 87 ELAQYAHSIGADALLVVIPYYNKPNRRGLLAH-----------------------FGEIATTV--SSPIYIYNNPSR-TV 140 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~-----------------------~~~i~~~~--~~pi~iYn~P~~-~g 140 (292)
.++-.+--.-=|-|++..|+|... ..++++ +.++.++. ...+++.|+|.. ||
T Consensus 116 ~~a~~al~~pGDeViv~~P~y~~y--~~~i~~~g~~~vpv~l~~~~~~~~~~~~d~d~le~~i~~~tk~iil~nP~NPTG 193 (406)
T PRK06207 116 FLAVASTVTRGDKVAIVQPDYFAN--RKLVEFFEGEIVPVQLDYVSVDETRAGLDLDQLEAAFKAGVRVFLFSNPNNPAG 193 (406)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCH--HHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCC
T ss_conf 999999758998799978987457--999998298799985677677634468999999974544876999889979857
Q ss_pred CCCCHHHHHHHHH
Q ss_conf 2111068999743
Q gi|254780276|r 141 IEMDVDTMAELAA 153 (292)
Q Consensus 141 ~~~~~~~l~~L~~ 153 (292)
..++.+.+.+|++
T Consensus 194 ~v~s~e~l~~l~~ 206 (406)
T PRK06207 194 VVYSPEEIAQIAA 206 (406)
T ss_pred HHCCHHHHHHHHH
T ss_conf 2133999999999
No 443
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=62.67 E-value=9.8 Score=18.70 Aligned_cols=28 Identities=4% Similarity=-0.008 Sum_probs=13.3
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 4317889999999875302330121001
Q gi|254780276|r 109 KPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 109 ~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
.|+......+...+|++.++|-+-...|
T Consensus 69 Gpss~~s~~~vqSic~~l~IP~I~~~~p 96 (372)
T cd06387 69 GFYDQMSMNTLTSFCGALHTSFITPSFP 96 (372)
T ss_pred CCCCHHHHHHHHHHHCCCCCCCEECCCC
T ss_conf 7797778999999737888870461478
No 444
>pfam05853 DUF849 Prokaryotic protein of unknown function (DUF849). This family consists of several hypothetical prokaryotic proteins with no known function.
Probab=62.64 E-value=12 Score=17.93 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH
Q ss_conf 868999999999999769989998672325010899999998654
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL 62 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~ 62 (292)
+.|.+.+++.++..-+. +..+.+.=|||-...++.+||.+.++.
T Consensus 56 s~d~~~y~e~i~~Ir~~-~pd~ii~~Ttg~~~~~~~eeR~~~v~~ 99 (274)
T pfam05853 56 SQDPELFREVLERIREA-VPDVIINLTTGGSPGMTVEERLAPVEA 99 (274)
T ss_pred CCCHHHHHHHHHHHHHH-CCCCEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 68899999999999987-899689945787788988899999986
No 445
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=62.53 E-value=13 Score=17.91 Aligned_cols=102 Identities=14% Similarity=0.125 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHH--CCCCCC--CCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999769989998672325010899999998654311--012344--300367410278999975343210244
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVK--TVASRV--PVMAGIGSNNTRESVELAQYAHSIGAD 98 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~--~~~~r~--pii~gv~~~~~~~~i~~a~~a~~~Gad 98 (292)
..++.++.+++.+|+|+.+.++. .+.+....+.+.-.- ..+... +-+..|...+..-+...++|..+.|..
T Consensus 42 ~~e~~l~~l~~~~vDGiIi~~~~-----~~~~~~~~~~~~~iPvV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~L~~~Gh~ 116 (266)
T cd06278 42 DLDAALRQLLQYRVDGVIVTSGT-----LSSELAEECRRNGIPVVLINRYVDGPGVDAVCSDNYEAGRLAAELLLAKGCR 116 (266)
T ss_pred HHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHCCCCEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC
T ss_conf 99999999995599999994898-----9999999999769989997876899999899977899999999999980998
Q ss_pred CCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 32001-234334317889999999875302330
Q gi|254780276|r 99 ALLVV-IPYYNKPNRRGLLAHFGEIATTVSSPI 130 (292)
Q Consensus 99 ~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~pi 130 (292)
-+..+ .|.......+-...|.+.+ ...+++.
T Consensus 117 ~I~~i~~~~~~~~~~~R~~G~~~al-~~~gl~~ 148 (266)
T cd06278 117 RIAFIGGPADTSTSRERERGFRDAL-AAAGVPV 148 (266)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HHCCCCC
T ss_conf 8999968888814999999999999-9869994
No 446
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=62.44 E-value=13 Score=17.90 Aligned_cols=93 Identities=10% Similarity=-0.004 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHHC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 08999999986543110---123443003674102789999753432102443200123433431788999999987530
Q gi|254780276|r 50 TLSHEEHCRIIELCVKT---VASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV 126 (292)
Q Consensus 50 ~Ls~~Er~~~~~~~~~~---~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~ 126 (292)
.+|.+|-.+.+..-... -+|-+.+=-|=.-...+=+.++.+.+++.|.+-.+=..- |. -.+.|.++.+.+
T Consensus 18 ~~tveel~~~i~kd~~fy~~SgGGVT~SGGEpl~Q~~F~~ellk~~k~~gihtaieTsG-~~------~~~~~~~~~~~~ 90 (213)
T PRK10076 18 DISLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAG-DA------PASKLLPLAKLC 90 (213)
T ss_pred EEEHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCHHHHHHHHHHHHHCCCCEEEECCC-CC------CHHHHHHHHHHC
T ss_conf 81099999999971999824798078607526359999999999998669988997688-88------899999999845
Q ss_pred CCCCEEEECHHHCCCCCCHHHHHHHHHHCCH
Q ss_conf 2330121001111121110689997432030
Q gi|254780276|r 127 SSPIYIYNNPSRTVIEMDVDTMAELAATYPN 157 (292)
Q Consensus 127 ~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pn 157 (292)
| +++||... ++++..+++.. .+|
T Consensus 91 D--l~L~DiK~-----~d~~~h~~~TG-~~n 113 (213)
T PRK10076 91 D--EVLFDLKI-----MDATQARDVVK-MNL 113 (213)
T ss_pred C--EEEEEECC-----CCHHHHHHHHC-CCH
T ss_conf 9--89986177-----98489999979-993
No 447
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=61.91 E-value=9.7 Score=18.71 Aligned_cols=31 Identities=42% Similarity=0.506 Sum_probs=26.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHH-CCCC
Q ss_conf 120177389888689999999999997-6998
Q gi|254780276|r 7 PALITPFTKGNLIDEDAFVEHIEWQIT-EGSG 37 (292)
Q Consensus 7 ~~~~TPf~~d~~iD~~~~~~~i~~l~~-~gv~ 37 (292)
++..||+.++..||.+++++.|+..+. +|++
T Consensus 51 ~i~fTP~~~~~~ID~~~i~~~i~~qy~~Agi~ 82 (471)
T PRK10719 51 PVFFTPLDKQGGIDEAAIKELIEEQYQAAGIA 82 (471)
T ss_pred CCEECCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 72104668877327999999999999984999
No 448
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=61.88 E-value=13 Score=17.83 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=79.4
Q ss_pred CCCCHHHHHHHHHHHHHC-CCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHHHHHHHHH
Q ss_conf 886899999999999976-9989998672325010899999998654311012344---300367410278999975343
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITE-GSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRV---PVMAGIGSNNTRESVELAQYA 92 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~-gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~---pii~gv~~~~~~~~i~~a~~a 92 (292)
..++.+.+++........ +.......+. .++. .+=|..+.+.+....+-++ -|++. .++.++++++-.+
T Consensus 102 ~~fp~~~~~~~~~~~~~~~~~~~~~~y~~-~~G~---~~LR~~ia~~l~~~~g~~~~~~~IiiT---~G~q~al~l~~~~ 174 (459)
T COG1167 102 SLFPLEALRRALARVLRNYGASLALQYGP-TAGL---PELREAIAAYLLARRGISCEPEQIVIT---SGAQQALDLLLRL 174 (459)
T ss_pred HHCCHHHHHHHHHHHHHHCCHHHHHCCCC-CCCC---HHHHHHHHHHHHHHCCCCCCHHHEEEC---CCHHHHHHHHHHH
T ss_conf 01888999999999985056123322687-6888---999999999999974998883038980---6499999999998
Q ss_pred HHCCCCCCCEECCCCCCC----------------CHHH-HHHHHHHHHHHHCCCCEEEECHH---HCCCCCCHHH---HH
Q ss_conf 210244320012343343----------------1788-99999998753023301210011---1112111068---99
Q gi|254780276|r 93 HSIGADALLVVIPYYNKP----------------NRRG-LLAHFGEIATTVSSPIYIYNNPS---RTVIEMDVDT---MA 149 (292)
Q Consensus 93 ~~~Gad~i~v~~P~~~~~----------------~~~~-i~~~~~~i~~~~~~pi~iYn~P~---~~g~~~~~~~---l~ 149 (292)
-----|-|++-.|-|... ++++ ..+-+++.+..- .|=++|=+|. .||..||.+- +.
T Consensus 175 l~~pGd~v~vE~PtY~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~-~~k~~y~~P~~qNPtG~tms~~rR~~Ll 253 (459)
T COG1167 175 LLDPGDTVLVEDPTYPGALQALEALGARVIPVPVDEDGIDPEALEEALAQW-KPKAVYVTPTFQNPTGVTMSLERRKALL 253 (459)
T ss_pred HCCCCCEEEECCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 479999999899982899999998699478606788898979999998506-9728997889638898745999999999
Q ss_pred HHHHHCCHHHHHHCCCC-CH----HHHHHHHHHCC-CCEEECCCCCCCHHHHHHHCC
Q ss_conf 97432030233100122-11----35899997359-840320132210012432033
Q gi|254780276|r 150 ELAATYPNIVGVKDATG-KI----ELVSEQRLSCG-FDFIQLSGEDSSALGFNAHGG 200 (292)
Q Consensus 150 ~L~~~~pni~giK~~~~-~~----~~~~~~~~~~~-~~~~v~~G~~~~~~~~~~~G~ 200 (292)
+++++ .++.=|-|... ++ .....+..... .++..++...-.+.+++..|.
T Consensus 254 ~lA~~-~~~~IIEDD~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~ 309 (459)
T COG1167 254 ALAEK-YDVLIIEDDYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGY 309 (459)
T ss_pred HHHHH-CCCEEEEECCCHHHCCCCCCCCCHHHHCCCCCEEEECCCHHHHCCCCCEEE
T ss_conf 99997-598799867743321588998345762899978999132665146755499
No 449
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=61.70 E-value=13 Score=17.81 Aligned_cols=106 Identities=12% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH-----HHHCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 868999999999999769989998672325010899999998654-----311012344300367410278999975343
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL-----CVKTVASRVPVMAGIGSNNTRESVELAQYA 92 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~-----~~~~~~~r~pii~gv~~~~~~~~i~~a~~a 92 (292)
.-|.+.-++.++.+.+.+++|+.+.++. .+.+....+.+. .++..... .-+..|...+..-.-..++|.
T Consensus 38 ~~~~~~e~~~i~~l~~~~vDGiI~~~~~-----~~~~~~~~l~~~~~PvV~i~~~~~~-~~~~~V~~Dn~~~~~~a~~~L 111 (268)
T cd06298 38 DNDKEKELKVLNNLLAKQVDGIIFMGGK-----ISEEHREEFKRSPTPVVLAGSVDED-NELPSVNIDYKKAAFEATELL 111 (268)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC-----CCHHHHHHHHHCCCCEEEECCCCCC-CCCCEEEECHHHHHHHHHHHH
T ss_conf 9998999999999996699999982677-----9999999999669989995775789-998789848899999999999
Q ss_pred HHCCCCCCCEEC-CCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 210244320012-3433431788999999987530233
Q gi|254780276|r 93 HSIGADALLVVI-PYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 93 ~~~Gad~i~v~~-P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
.+.|..-+.++. |.-...+.++=.+-|++.++..+++
T Consensus 112 ~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a~~~~g~~ 149 (268)
T cd06298 112 IKNGHKKIAFISGPLEDSINGDERLAGYKEALSEANIE 149 (268)
T ss_pred HHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 97299669999678777625999999999999984999
No 450
>PRK02145 consensus
Probab=61.68 E-value=13 Score=17.81 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=83.4
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++.+.+.|++-|.+.-..|- .-..+.-.++++.+++.+ .+|+-+|=|=-+. +.++.+-++|||-|.+-
T Consensus 33 P~~~a~~~~~~GadelhivDld~a--~~~~~~~~~~I~~i~~~~--~iPi~vGGGIrs~----e~~~~ll~~GadkVii~ 104 (257)
T PRK02145 33 PVEIARRYDEQGADELTFLDITAT--SDGRDLILPIIEAVASQV--FIPLTVGGGVRAV----EDVRRLLNAGADKVSMN 104 (257)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCC--CCCCHHHHHHHHHHHHHC--CCCEEEECCCCCH----HHHHHHHHCCCCEEEEH
T ss_conf 999999999879998999978887--667540899999999656--8748962773046----88999998199889841
Q ss_pred CCCCCCCCHHHHHHHHHHHHHH-H--CCCCE------------EEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------
Q ss_conf 2343343178899999998753-0--23301------------2100111112111068999743203023310------
Q gi|254780276|r 104 IPYYNKPNRRGLLAHFGEIATT-V--SSPIY------------IYNNPSRTVIEMDVDTMAELAATYPNIVGVK------ 162 (292)
Q Consensus 104 ~P~~~~~~~~~i~~~~~~i~~~-~--~~pi~------------iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------ 162 (292)
...+..| +.+.+..+..-+. + .+.+- +|-.-......+++..+.+...+.+ +--|-
T Consensus 105 s~a~~np--~~v~~~~~~fG~q~Iv~siD~k~~~~~~~~~~~~v~~~~~~~~t~~~~~~~~~~~~~~G-~geil~tdI~r 181 (257)
T PRK02145 105 SSAVANP--QLVRDAADKYGSQCIVVAIDAKRVSADGEPPRWEVFTHGGRKATGLDAVEWARKMAELG-AGEILLTSMDR 181 (257)
T ss_pred HHHHHCC--CHHHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEEECCCEECCCCCHHHHHHHHHHCC-CCEEEEEEECC
T ss_conf 5566593--02245787669834499999873367777750899977871436774557656887618-78689999847
Q ss_pred CC---CCCHHHHHHHHHHCCCCEEECCCCCC--CHHHHHHHC-CCCCC
Q ss_conf 01---22113589999735984032013221--001243203-34455
Q gi|254780276|r 163 DA---TGKIELVSEQRLSCGFDFIQLSGEDS--SALGFNAHG-GVGCI 204 (292)
Q Consensus 163 ~~---~~~~~~~~~~~~~~~~~~~v~~G~~~--~~~~~~~~G-~~G~i 204 (292)
|. ..|++.+.++.+..+-++....|... .+...+..| +.|.+
T Consensus 182 DG~~~G~dl~l~~~i~~~~~ipvIasGGi~s~~di~~~~~~~~~~av~ 229 (257)
T PRK02145 182 DGTKSGFDLALTRAVSDAVPVPVIASGGVGSLQHLADGITEGHADAVL 229 (257)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEE
T ss_conf 787788897999999862699899986899999999999808984876
No 451
>pfam00478 IMPDH IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.
Probab=61.45 E-value=13 Score=17.78 Aligned_cols=69 Identities=16% Similarity=0.133 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHH-CCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 789999753432102443200123433431788999999987530-2330121001111121110689997432030233
Q gi|254780276|r 82 TRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVG 160 (292)
Q Consensus 82 ~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~-~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~g 160 (292)
..+.+++++..-++|+|.+.+-.. ......+.+..+.|-+.. ++||+.=| .-+.+..+.|.+ - ..-+
T Consensus 221 ~~~~~eRa~~Lv~aGvDvivIDtA---hGhs~~vi~~ik~ik~~~p~~~iIaGN-------VaT~e~a~~Li~-a-GAD~ 288 (467)
T pfam00478 221 RDDDLERAEALVEAGVDVIVIDSA---HGHSEYVLEMIKWIKKKYPDLDVIAGN-------VVTAEAARELID-A-GADA 288 (467)
T ss_pred CHHHHHHHHHHHHCCCCEEEEECC---CCCCHHHHHHHHHHHHCCCCCCEEEEE-------ECCHHHHHHHHH-H-CCCE
T ss_conf 865999999998769988997344---544188999999987407877378510-------058999999997-0-7775
Q ss_pred HH
Q ss_conf 10
Q gi|254780276|r 161 VK 162 (292)
Q Consensus 161 iK 162 (292)
+|
T Consensus 289 vK 290 (467)
T pfam00478 289 VK 290 (467)
T ss_pred EE
T ss_conf 77
No 452
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=61.38 E-value=13 Score=17.77 Aligned_cols=142 Identities=19% Similarity=0.214 Sum_probs=74.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH----HHHHHHHH-HHHHCCCC
Q ss_conf 99999999976998999867232501089999999865431101234430036741027----89999753-43210244
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNT----RESVELAQ-YAHSIGAD 98 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~----~~~i~~a~-~a~~~Gad 98 (292)
+...++...++||..+++.|+ +.++..++.+.+.+. +.+-.-+|+--... .+..+..+ .+++-.+-
T Consensus 17 ~~~vi~~a~~~gv~~ii~~~~-------~~~~~~~~~~la~~~--~~i~~~~GiHP~~~~~~~~~~~~~l~~~~~~~~~v 87 (251)
T cd01310 17 RDDVLARAREAGVIKIIVVGT-------DLKSSKRALELAKKY--DNVYAAVGLHPHDADEHVDEDLDLLELLAANPKVV 87 (251)
T ss_pred HHHHHHHHHHCCCCEEEEECC-------CHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHCCHHHHHHHHHHHCCCCEE
T ss_conf 999999999869988999689-------999999999999759--98689823683765123577999999997289906
Q ss_pred CC-CEECCCCCCC----CHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHH
Q ss_conf 32-0012343343----178899999998753023301210011111211106899974320302331001221135899
Q gi|254780276|r 99 AL-LVVIPYYNKP----NRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSE 173 (292)
Q Consensus 99 ~i-~v~~P~~~~~----~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~ 173 (292)
|| -+...||+.. .|.++++..-++|...++|++++.- + =..+++ ++.++...
T Consensus 88 aIGEiGLD~~~~~~~~~~Q~~~F~~ql~lA~~~~lPv~iH~R----~--A~~~~l-~iL~~~~~---------------- 144 (251)
T cd01310 88 AIGEIGLDYYRDKSPREVQKEVFRAQLELAKELNLPVVIHSR----D--AHEDVL-EILKEYGP---------------- 144 (251)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEC----C--CHHHHH-HHHHHCCC----------------
T ss_conf 998501488888998999999999999999875788489864----5--479999-99997088----------------
Q ss_pred HHHHCCCCEEECCCCCCCHHHHHHHCC
Q ss_conf 997359840320132210012432033
Q gi|254780276|r 174 QRLSCGFDFIQLSGEDSSALGFNAHGG 200 (292)
Q Consensus 174 ~~~~~~~~~~v~~G~~~~~~~~~~~G~ 200 (292)
..+.-+..|+|+..++-..+.+|+
T Consensus 145 ---~~~~v~H~fsG~~~~a~~~l~~G~ 168 (251)
T cd01310 145 ---PKRGVFHCFSGSAEEAKELLDLGF 168 (251)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHCCE
T ss_conf ---877388856899999998611890
No 453
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=61.25 E-value=13 Score=17.76 Aligned_cols=31 Identities=16% Similarity=0.136 Sum_probs=23.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 7738988868999999999999769989998
Q gi|254780276|r 11 TPFTKGNLIDEDAFVEHIEWQITEGSGGLVP 41 (292)
Q Consensus 11 TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~ 41 (292)
+-|..+-+.|.......++..+.+++|+|.+
T Consensus 36 ~~~~~~~~~D~~~Q~~~le~~i~~~~D~Ii~ 66 (280)
T cd06303 36 TQFSSRPGIDHRLQSQQLNEALQSKPDYLIF 66 (280)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 8814788747999999999998537998999
No 454
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=61.20 E-value=13 Score=17.75 Aligned_cols=106 Identities=23% Similarity=0.191 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC--------CCCCC-CCCCCCCHHHHHHHHHHH
Q ss_conf 999999999999769989998672325010899999998654311012--------34430-036741027899997534
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA--------SRVPV-MAGIGSNNTRESVELAQY 91 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~--------~r~pi-i~gv~~~~~~~~i~~a~~ 91 (292)
.+.+++.++++.+.|+.-+.+-...+|.+.=+.+|-..+++...+... ..+.+ ++|-.+..+.+..+.++.
T Consensus 46 ~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~ 125 (245)
T COG0020 46 AKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALREELKKLHKNGVRIRIIGDLSRLPEEVREAIEK 125 (245)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 89999999999981988899999846641889899999999999999998888866674999971302198899999899
Q ss_pred HHHCCC--CCCCEECCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 321024--432001234334317889999999875302
Q gi|254780276|r 92 AHSIGA--DALLVVIPYYNKPNRRGLLAHFGEIATTVS 127 (292)
Q Consensus 92 a~~~Ga--d~i~v~~P~~~~~~~~~i~~~~~~i~~~~~ 127 (292)
+++.-. +++.+. -...-...++|.+=.+.+++.+.
T Consensus 126 ~e~~t~~~~~~~l~-~a~nYGGR~eI~~avr~ia~~v~ 162 (245)
T COG0020 126 AEEKTKNNTGLTLN-IAVNYGGRDEIVDAVRKIAEDVA 162 (245)
T ss_pred HHHHCCCCCCEEEE-EEECCCCHHHHHHHHHHHHHHHH
T ss_conf 99844578965999-85378988999999999999987
No 455
>TIGR01173 glmU UDP-N-acetylglucosamine pyrophosphorylase; InterPro: IPR005882 N-Acetylglucosamine-1-PO(4) uridyltransferase (GlmU, 2.7.7.23 from EC) is a trimeric bifunctional enzyme that catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-GlcNAc. The X-ray crystal structure of Escherichia coli GlmU in complex with UDP-GlcNAc and CoA has been determined to 2.1 A resolution and reveals a two-domain architecture that is responsible for these two reactions . The C-terminal domain is responsible for the CoA-dependent acetylation of Glc-1-PO(4) to GlcNAc-1-PO(4) and displays the longest left-handed parallel beta-helix observed to date. The acetyltransferase active site defined by the binding site for CoA makes use of residues from all three subunits and is positioned beneath an open cavity large enough to accommodate the Glc-1-PO(4) acetyl acceptor. The N-terminal domain catalyzes uridyl transfer from UTP to GlcNAc-1-PO(4) to form the final products UDP-GlcNAc and pyrophosphate. This domain is composed of a central seven-stranded beta-sheet surrounded by six alpha-helices in a Rossmann fold-like topology. ; GO: 0003977 UDP-N-acetylglucosamine diphosphorylase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=61.12 E-value=4.7 Score=21.03 Aligned_cols=85 Identities=19% Similarity=0.472 Sum_probs=44.5
Q ss_pred HHHHHHHCC----CCCCCCCCCCCCCHHHHHH--------HHHHHHHHCC--CCCCCEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf 865431101----2344300367410278999--------9753432102--4432001234334317889999999875
Q gi|254780276|r 59 IIELCVKTV----ASRVPVMAGIGSNNTRESV--------ELAQYAHSIG--ADALLVVIPYYNKPNRRGLLAHFGEIAT 124 (292)
Q Consensus 59 ~~~~~~~~~----~~r~pii~gv~~~~~~~~i--------~~a~~a~~~G--ad~i~v~~P~~~~~~~~~i~~~~~~i~~ 124 (292)
+++.+++++ +.|+-||.|-++...++++ .++..++++| ++||+-..|+.....++.+
T Consensus 30 Ml~hVi~~A~~L~~~~i~vV~GH~~~~V~~~l~~~~d~t~~~v~Q~~qlGGTGHAv~~a~~~l~~~~~~~v--------- 100 (461)
T TIGR01173 30 MLEHVIDAARKLSPEKIHVVLGHGAEQVRKALAEENDKTVNWVLQAEQLGGTGHAVLQALPFLSEDDDGRV--------- 100 (461)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEE---------
T ss_conf 78999999853783415999816869999985037996799999688978728999871167888668608---------
Q ss_pred HHCCCCEEE-ECHHHCCCCCCHHHHH-HHHHHCCHHHHHH
Q ss_conf 302330121-0011111211106899-9743203023310
Q gi|254780276|r 125 TVSSPIYIY-NNPSRTVIEMDVDTMA-ELAATYPNIVGVK 162 (292)
Q Consensus 125 ~~~~pi~iY-n~P~~~g~~~~~~~l~-~L~~~~pni~giK 162 (292)
++|| |.|- ++.|+|+ +|.+.+++..+.|
T Consensus 101 -----LvLyGDvPL-----i~~eTL~m~Ll~~~~~~~~~~ 130 (461)
T TIGR01173 101 -----LVLYGDVPL-----ISAETLEMRLLESHRQLNGAK 130 (461)
T ss_pred -----EEEECCCCC-----CCHHHHHHHHHHHHHCCCCCC
T ss_conf -----999588787-----756778779888630001045
No 456
>KOG0238 consensus
Probab=60.97 E-value=13 Score=17.72 Aligned_cols=146 Identities=18% Similarity=0.151 Sum_probs=82.8
Q ss_pred EEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHH
Q ss_conf 99986723250108999999986543110123443003674102789999753432102443200123433431788999
Q gi|254780276|r 38 GLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLA 117 (292)
Q Consensus 38 gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~ 117 (292)
.+.++....-..+|+.+- +++.+.++. -.-|..|.|-. .+..++++.+++.|.. .+.||.- ...+-+...
T Consensus 44 av~ig~a~~~~SYL~~~~---I~~aa~~tg--aqaihPGYGFL--SEn~~Fae~c~~~Gi~--FiGP~~~-aIrdMG~K~ 113 (670)
T KOG0238 44 AVCIGPAPAAQSYLRMDK---IIDAAKRTG--AQAIHPGYGFL--SENAEFAELCEDAGIT--FIGPPPS-AIRDMGDKS 113 (670)
T ss_pred EEECCCCCHHHHHHHHHH---HHHHHHHCC--CCEECCCCCCC--CCCHHHHHHHHHCCCE--EECCCHH-HHHHHCCHH
T ss_conf 034288734443413789---999998628--84621785532--3553899999876986--8798879-988731257
Q ss_pred HHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCC----------CHHHHHHHHHHCCCCEEECCC
Q ss_conf 9999875302330121001111121110689997432030233100122----------113589999735984032013
Q gi|254780276|r 118 HFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATG----------KIELVSEQRLSCGFDFIQLSG 187 (292)
Q Consensus 118 ~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~----------~~~~~~~~~~~~~~~~~v~~G 187 (292)
.-++|+.++..|++ |...|-.-|.|.++|.++++.-=+.||-+.| +...+.+..+.....-.-.-|
T Consensus 114 ~sk~im~~AgVp~v----pG~~g~~qs~e~~~~~a~eIgyPvMiKa~~GGGGkGMria~~~~ef~~~~~~ak~Ea~~sFG 189 (670)
T KOG0238 114 TSKQIMKAAGVPLV----PGYHGEDQSDEEAKKVAREIGYPVMIKATAGGGGKGMRIAWSEEEFEEGLESAKQEAAKSFG 189 (670)
T ss_pred HHHHHHHHCCCCCC----CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 78999986499613----68564326679999999861985799951578876317514868899999988888876318
Q ss_pred CCCCHHHHHH
Q ss_conf 2210012432
Q gi|254780276|r 188 EDSSALGFNA 197 (292)
Q Consensus 188 ~~~~~~~~~~ 197 (292)
+|..+++-+.
T Consensus 190 dd~~llEkfi 199 (670)
T KOG0238 190 DDGMLLEKFI 199 (670)
T ss_pred CCHHHHHHHC
T ss_conf 6411077763
No 457
>PRK10128 putative aldolase; Provisional
Probab=60.91 E-value=13 Score=17.72 Aligned_cols=68 Identities=21% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
..++.+-..|.|.+++=. |--.++.++-..+++.+... +..|+ +-+...+. ..++++-+.|++||++-
T Consensus 13 ~~aEi~a~~G~D~v~iD~---EHg~~~~~~~~~~~~a~~~~--~~~pi-VRv~~~~~----~~i~r~LD~Ga~GiivP 80 (250)
T PRK10128 13 YMAEIAATSGYDWLLIDG---EHAPNTIQDLYHQLQAVAPY--ASQPV-IRPVEGSK----ALIKQVLDIGAQTLLIP 80 (250)
T ss_pred HHHHHHHCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHC--CCCEE-EECCCCCH----HHHHHHHHCCCCEEEEC
T ss_conf 999999808989999817---78999999999999999865--99719-98589998----89999983789877854
No 458
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=60.89 E-value=13 Score=17.71 Aligned_cols=104 Identities=10% Similarity=0.096 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHH----H-HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8999999999999769989998672325010899999998654----3-1101234430036741027899997534321
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIEL----C-VKTVASRVPVMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~----~-~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~ 94 (292)
|.+..+.+++.+.+.+|+|+.+..+..+...+ +..+.+. + ++... .-+-+..|...+-.-....+++.-+
T Consensus 41 ~~~~~~~~~~~l~~~~vdGiIl~~~~~~~~~~----~~~l~~~~iPvV~i~~~~-~~~~~~~V~~Dn~~~~~~a~~~L~~ 115 (270)
T cd01545 41 SPDLAERVRALLQRSRVDGVILTPPLSDNPEL----LDLLDEAGVPYVRIAPGT-PDPDSPCVRIDDRAAAREMTRHLID 115 (270)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH----HHHHHHCCCCEEEECCCC-CCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 98999999999996699989994788899999----999997799799987887-7899978997889999999999997
Q ss_pred CCCCCCCEE-CCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 024432001-23433431788999999987530233
Q gi|254780276|r 95 IGADALLVV-IPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 95 ~Gad~i~v~-~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
.|..-+..+ .|.-...+.+ =.+-|++.+...+++
T Consensus 116 ~G~~~I~~i~g~~~~~~~~~-R~~Gf~~a~~~~gi~ 150 (270)
T cd01545 116 LGHRRIAFIAGPPDHRASAE-RLEGYRDALAEAGLP 150 (270)
T ss_pred CCCCEEEEECCCCCCCHHHH-HHHHHHHHHHHCCCC
T ss_conf 49965999369977736999-999999999983999
No 459
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=60.71 E-value=13 Score=17.69 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=21.7
Q ss_pred EECCCCCCCHHHH-HHHCCCCCC---CCCCCCCCCHHHHHHHHHCCC
Q ss_conf 3201322100124-320334455---222232110024444431178
Q gi|254780276|r 183 IQLSGEDSSALGF-NAHGGVGCI---SVTANVVPRICAEFQQAMIRG 225 (292)
Q Consensus 183 ~v~~G~~~~~~~~-~~~G~~G~i---s~~~n~~P~~~~~l~~~~~~g 225 (292)
.++.|.+..++.+ ...|.+|.+ .|.||+-+++...+-++..+|
T Consensus 294 k~~PG~~~~~l~~~~~~g~kGIVleg~G~Gnvp~~l~~~i~~a~~~G 340 (421)
T PRK04183 294 KFYPGMDPEILDFYVDKGYKGIVIEGTGLGHVSTDLIPSIKRATDDG 340 (421)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 97799899999999746987899971658999989999999999889
No 460
>PRK10508 hypothetical protein; Provisional
Probab=60.60 E-value=14 Score=17.68 Aligned_cols=68 Identities=16% Similarity=0.215 Sum_probs=47.5
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHCCCCCCCEE----CCCCCCCCHHHHHHHHHHHHHHHC---CCCEEEECH
Q ss_conf 3443003674-1027899997534321024432001----234334317889999999875302---330121001
Q gi|254780276|r 69 SRVPVMAGIG-SNNTRESVELAQYAHSIGADALLVV----IPYYNKPNRRGLLAHFGEIATTVS---SPIYIYNNP 136 (292)
Q Consensus 69 ~r~pii~gv~-~~~~~~~i~~a~~a~~~Gad~i~v~----~P~~~~~~~~~i~~~~~~i~~~~~---~pi~iYn~P 136 (292)
+.+||-.|-+ ....++++++||+|+++|++-+.+. .|.+...+++=++.|...-.+.+- ..||+-|+.
T Consensus 12 D~~pv~~g~~~~~Al~~tv~LA~~Ae~lGy~R~WvaEHH~~~~~assaPeili~~laa~T~~IRvGSGGvmLp~ys 87 (333)
T PRK10508 12 DLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHS 87 (333)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCEEEECCEEECCCCC
T ss_conf 4141489979999999999999999982998798633449998666779999999985189625623445768898
No 461
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=60.54 E-value=14 Score=17.67 Aligned_cols=88 Identities=24% Similarity=0.278 Sum_probs=47.7
Q ss_pred HHHHHHHHHCCCCEEEECCCC--CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 999999997699899986723--250108999999986543110123443003674102789999753432102443200
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTT--GESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLV 102 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~t--GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v 102 (292)
-.+.+++.+.|+|-++.+--| .|+ .+--.++++.+++.+ -+|+-+|=|=-+++|+ +..-.+|||-|.+
T Consensus 33 VelA~~Y~e~GADElvFlDItAs~~g----r~~~~~vv~~~A~~v--fiPltVGGGI~s~eD~----~~ll~aGADKVSI 102 (256)
T COG0107 33 VELAKRYNEEGADELVFLDITASSEG----RETMLDVVERVAEQV--FIPLTVGGGIRSVEDA----RKLLRAGADKVSI 102 (256)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCC----CCCHHHHHHHHHHHC--EEEEEECCCCCCHHHH----HHHHHCCCCEEEE
T ss_conf 99999997759976999862256566----620799999997303--0324754775888999----9999769974652
Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 12343343178899999998753023
Q gi|254780276|r 103 VIPYYNKPNRRGLLAHFGEIATTVSS 128 (292)
Q Consensus 103 ~~P~~~~~~~~~i~~~~~~i~~~~~~ 128 (292)
-.+....|+ +-+++++.-..
T Consensus 103 NsaAv~~p~------lI~~~a~~FGs 122 (256)
T COG0107 103 NSAAVKDPE------LITEAADRFGS 122 (256)
T ss_pred CHHHHCCHH------HHHHHHHHHCC
T ss_conf 846750959------99999998388
No 462
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=60.20 E-value=14 Score=17.63 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=15.2
Q ss_pred HHHHHHH-HCCCCCCCEECCCCCCCCH-HHHHHHHHHHH
Q ss_conf 9753432-1024432001234334317-88999999987
Q gi|254780276|r 87 ELAQYAH-SIGADALLVVIPYYNKPNR-RGLLAHFGEIA 123 (292)
Q Consensus 87 ~~a~~a~-~~Gad~i~v~~P~~~~~~~-~~i~~~~~~i~ 123 (292)
..++.++ +.+..-|-+..|.|...+. .+...-++.+.
T Consensus 108 ~v~~~~~~~~~~pvi~v~tpgf~g~~~~~G~~~a~~~i~ 146 (406)
T cd01967 108 AVAKEASKELGIPVIPVNCEGFRGVSQSLGHHIANDAIL 146 (406)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 999998886099789987898788764699999999999
No 463
>PRK09989 hypothetical protein; Provisional
Probab=60.18 E-value=11 Score=18.42 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 9997534321024432001234334317889999999875302330121001
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
-+++.+.|+++|.++|-+.-||-+. .+++ ++.++...+++.++|.|
T Consensus 17 ~~dR~~aAa~aGF~aVE~~~Pyd~~--~~~i----~~~l~~~gL~~~l~n~~ 62 (258)
T PRK09989 17 FIERFAAARKAGFDAVEFLFPYDYS--ASQI----QAQLSQNHLTLALFNTA 62 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--HHHH----HHHHHHCCCEEEEECCC
T ss_conf 9999999998099999975766699--9999----99999769807872268
No 464
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=60.16 E-value=14 Score=17.63 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=43.1
Q ss_pred CHHHHHHHHHHHHHHCCCCCC-CEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHH
Q ss_conf 027899997534321024432-00123433431788999999987530233012100111112111068999743
Q gi|254780276|r 80 NNTRESVELAQYAHSIGADAL-LVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAA 153 (292)
Q Consensus 80 ~~~~~~i~~a~~a~~~Gad~i-~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~ 153 (292)
.+.+++++.|+.|++.|+.-. ++..-.-....-+.+.+..+.|.+..++++++ ..| .++.+..++|.+
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~-----slG-~l~~eq~~~L~~ 152 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCA-----SLG-MLTEEQAEKLAD 152 (335)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCHHHH-----CCC-CCCHHHHHHHHH
T ss_conf 899999999999997499507998731677744899999999999846928640-----258-799999999997
No 465
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=60.14 E-value=14 Score=17.62 Aligned_cols=114 Identities=13% Similarity=0.156 Sum_probs=68.1
Q ss_pred HHHHHHHHCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECH
Q ss_conf 9865431101234430036-741027899997534321024432001234334317889999999875302330121001
Q gi|254780276|r 58 RIIELCVKTVASRVPVMAG-IGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNP 136 (292)
Q Consensus 58 ~~~~~~~~~~~~r~pii~g-v~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P 136 (292)
+.++.+.+.+++++.+.+= -.+.+.++++++++..++.|..++ =-|. ..+ -++-++++.+.+++||..=.
T Consensus 82 ~~v~~ir~~~G~~~~l~vDaN~~~~~~~A~~~~~~l~~~~l~wi--EeP~----~~~-d~~~~~~l~~~~~ipIa~gE-- 152 (229)
T cd00308 82 ERVRAVREAFGPDARLAVDANGAWTPKEAIRLIRALEKYGLAWI--EEPC----APD-DLEGYAALRRRTGIPIAADE-- 152 (229)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEE--ECCC----CCC-CHHHHHHHHCCCCCCEECCC--
T ss_conf 99999999669998699989999999999999998521398376--4677----662-75899999613699863787--
Q ss_pred HHCCCCCCHHHHHHHHHHC-CHHHHHHCC-CC---CHHHHHHHHHHCCCCEEE
Q ss_conf 1111211106899974320-302331001-22---113589999735984032
Q gi|254780276|r 137 SRTVIEMDVDTMAELAATY-PNIVGVKDA-TG---KIELVSEQRLSCGFDFIQ 184 (292)
Q Consensus 137 ~~~g~~~~~~~l~~L~~~~-pni~giK~~-~~---~~~~~~~~~~~~~~~~~v 184 (292)
...+.+.+.++.+.- -+++-+|-+ +| ...++.++....+-++.+
T Consensus 153 ----~~~~~~~~~~~i~~~a~di~~~d~~~~GGit~~~kia~~A~~~gi~~~~ 201 (229)
T cd00308 153 ----SVTTVDDALEALELGAVDILQIKPTRVGGLTESRRAADLAEAFGIRVMV 201 (229)
T ss_pred ----CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf ----6789999999999742210445766316399999999999986997997
No 466
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=60.04 E-value=14 Score=17.61 Aligned_cols=68 Identities=13% Similarity=-0.026 Sum_probs=47.8
Q ss_pred HHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 26 EHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 26 ~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
..++.+-..|.|.+++=. |-..++.++-..+++.+... + ++.++=|...+ -..++++-+.|++||++-
T Consensus 24 ~~~Ei~a~~G~D~v~iD~---EHg~~~~~~~~~~~~a~~~~--g-~~~iVRvp~~~----~~~i~~~LD~Ga~GiivP 91 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDG---EHAPNDVLTFIPQLMALKGS--A-SAPVVRPPWNE----PVIIKRLLDIGFYNFLIP 91 (249)
T ss_pred HHHHHHHCCCCCEEEEEC---CCCCCCHHHHHHHHHHHHHC--C-CCCEEECCCCC----HHHHHHHHCCCCCEEEEC
T ss_conf 999999718969999810---44899999999999999846--9-98489799998----789999970899878951
No 467
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.02 E-value=14 Score=17.61 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=15.0
Q ss_pred CCCHHHHHHHHHHHHHC--CCCEEEECC
Q ss_conf 86899999999999976--998999867
Q gi|254780276|r 18 LIDEDAFVEHIEWQITE--GSGGLVPAG 43 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~--gv~gi~~~G 43 (292)
+-|.+...+.++.++.. ++++|++.-
T Consensus 39 ~~d~~~q~~~ie~~I~~~~~vd~Iii~p 66 (305)
T cd06324 39 ERDRFLMLQQARTILQRPDKPDALIFTN 66 (305)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 9999999999999983637970999879
No 468
>PRK12833 acetyl-CoA carboxylase biotin carboxylase subunit; Provisional
Probab=59.51 E-value=14 Score=17.55 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=44.3
Q ss_pred EEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHH--
Q ss_conf 998672325010899999998654311012344300367410278999975343210244320012343343178899--
Q gi|254780276|r 39 LVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLL-- 116 (292)
Q Consensus 39 i~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~-- 116 (292)
+.+.+....-.+|+.+.-.++ +.++-.+ -|-.|-|. +.+.-++++.+++.|.. .+. |+.+.+.
T Consensus 52 v~ig~~~~~~sYln~~~Ii~~---A~~~g~d--AiHPGYGF--LSEna~FA~~~~~~gi~--fIG------Ps~~~i~~~ 116 (458)
T PRK12833 52 VHIGPSHAAKSYLNPAAILAA---ARQCGAD--AIHPGYGF--LSENAAFAAQVEAAGLI--FVG------PDAQVIATM 116 (458)
T ss_pred EEECCCCCCCCCCCHHHHHHH---HHHHCCC--EEECCCCH--HHHCHHHHHHHHHCCCE--EEC------CCHHHHHHH
T ss_conf 982898700132699999999---9982999--99768662--55299999999978998--999------499999985
Q ss_pred ---HHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCC
Q ss_conf ---999998753023301210011111211106899974320302331001
Q gi|254780276|r 117 ---AHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDA 164 (292)
Q Consensus 117 ---~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~ 164 (292)
.-.++++..+++|++ |...|..-+.+...+.++++.-=+.+|-+
T Consensus 117 GdK~~ar~~a~~~gvPvv----pgs~~~v~~~~ea~~~a~~iGyPv~iKAs 163 (458)
T PRK12833 117 GDKARARETARRAGVPTV----PGSDGVVASLDAALEVAARIGYPVMIKAA 163 (458)
T ss_pred HCHHHHHHHHHHCCCCCC----CCCCCCCCCHHHHHHHHHHCCCHHHHHHC
T ss_conf 096999999998499966----89667667799999999865975421332
No 469
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=59.34 E-value=14 Score=17.53 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 102789999753432102443200123433431788999999987530233012100
Q gi|254780276|r 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNN 135 (292)
Q Consensus 79 ~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~ 135 (292)
..+.+.-.+..+...+..+||+++.+.. +.++ +++..+ ...++|+++.+.
T Consensus 100 ~~~~~~e~~~~~~l~~~~vdgiIv~~~~---~~~~---~~~~~l-~~~~iPvV~i~~ 149 (330)
T PRK11303 100 DDQPDNEMQCAEHLLQRQVDALIVATSL---PPEH---PFYQRL-QNDGFPIIALDR 149 (330)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECCC---CCCC---HHHHHH-HHCCCCEEEECC
T ss_conf 9998999999999997489989994688---8862---999999-846997899725
No 470
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=59.05 E-value=10 Score=18.55 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=8.7
Q ss_pred HHHHHHHHHCCCCCCCEECC
Q ss_conf 99753432102443200123
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIP 105 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P 105 (292)
+++.+.|+++|.++|-+..|
T Consensus 18 ~eR~~aAa~~GF~aVE~~~P 37 (258)
T PRK09997 18 LARFEKAAQCGFRGVEFMFP 37 (258)
T ss_pred HHHHHHHHHCCCCEEEECCC
T ss_conf 99999999819999996486
No 471
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=59.00 E-value=14 Score=17.49 Aligned_cols=92 Identities=12% Similarity=0.114 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCC-----------CCCCCCHHHHHHHHHHH
Q ss_conf 9999999999769989998672325010899999998654311012344300-----------36741027899997534
Q gi|254780276|r 23 AFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVM-----------AGIGSNNTRESVELAQY 91 (292)
Q Consensus 23 ~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii-----------~gv~~~~~~~~i~~a~~ 91 (292)
.-+..++.+.+..|||+.+.. +.++..+.++ + -++|+| ..|...+-.-+...++|
T Consensus 38 ~~~~~~~~l~~~~VDGiI~~~--------~~~~~~~~l~---~---~~iPvV~i~~~~~~~~~~~V~~Dn~~~~~~a~~~ 103 (265)
T cd01543 38 GLQEPLRWLKDWQGDGIIARI--------DDPEMAEALQ---K---LGIPVVDVSGSREKPGIPRVTTDNAAIGRMAAEH 103 (265)
T ss_pred CHHHHHHHHHHCCCCEEEEEC--------CCHHHHHHHH---H---CCCCEEEECCCCCCCCCCEEECCHHHHHHHHHHH
T ss_conf 348999999837988899727--------9989999998---4---7995999898888899998962999999999999
Q ss_pred HHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 32102443200123433431788999999987530233
Q gi|254780276|r 92 AHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 92 a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
.-+.|..-+..+.+.....+++ =.+-|++-....+++
T Consensus 104 L~~~Ghr~I~~ig~~~~~~~~~-R~~Gf~~al~~~g~~ 140 (265)
T cd01543 104 FLERGFRHFAFYGLPGARWSDE-REEAFRQLVAEAGYE 140 (265)
T ss_pred HHHCCCCEEEEECCCCCHHHHH-HHHHHHHHHHHCCCC
T ss_conf 9986997499989998806999-999999999977999
No 472
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=58.82 E-value=14 Score=17.60 Aligned_cols=28 Identities=14% Similarity=-0.080 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHH
Q ss_conf 9999999999976998999867232501
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGTTGESS 49 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~tGE~~ 49 (292)
.-+.+.++-.-.+.|.---..|+||-++
T Consensus 35 ~Nq~kVL~AF~~~rvs~~hf~~stGYGy 62 (416)
T COG4100 35 YNQKKVLEAFRHHRVSESHFTGSTGYGY 62 (416)
T ss_pred HHHHHHHHHHHHCCCCHHCCCCCCCCCC
T ss_conf 8799999999854353002578887776
No 473
>KOG2550 consensus
Probab=58.76 E-value=10 Score=18.59 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=19.3
Q ss_pred HHHHHCCCCEEECCCCCCCH---HHHHHHCCCCCCCCC
Q ss_conf 99973598403201322100---124320334455222
Q gi|254780276|r 173 EQRLSCGFDFIQLSGEDSSA---LGFNAHGGVGCISVT 207 (292)
Q Consensus 173 ~~~~~~~~~~~v~~G~~~~~---~~~~~~G~~G~is~~ 207 (292)
..++..-+++.++.|+--+. -..+..|++|.=.|+
T Consensus 284 k~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGM 321 (503)
T KOG2550 284 KYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVGM 321 (503)
T ss_pred HHHHHHCCCCEEECCCEEEHHHHHHHHHCCCCEEEECC
T ss_conf 99986688863431655338889999873676057525
No 474
>PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=58.71 E-value=9.4 Score=18.84 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=26.5
Q ss_pred CCCCCHHHH--------HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCC
Q ss_conf 888689999--------99999999769989998672325010899999998654311012
Q gi|254780276|r 16 GNLIDEDAF--------VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVA 68 (292)
Q Consensus 16 d~~iD~~~~--------~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~ 68 (292)
.|.|+.+.+ +.+++.+.++|++-+ |.||+. |.++++.....+.
T Consensus 26 ~Gki~~eeL~~~~~~~~~~~~~~Q~~aGidii----tdGe~~------~~~~~~~~~~~~~ 76 (320)
T PRK08575 26 IGKISEEKLEEAIREYTRRAFELLKDAGIKYT----TDGLYR------WDDIFDPTISFIE 76 (320)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE----CCCCCH------HHHHHHHHHHHHC
T ss_conf 79999999999999999999999997499452----568510------8889999988744
No 475
>pfam01997 Translin Translin family. Members of this family include Translin that interacts with DNA and forms a ring around the DNA. This family also includes Translin-associated protein X, which was found to interact with translin with yeast two-hybrid screen.
Probab=58.58 E-value=10 Score=18.57 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 52222321100244444311788279999999999999998
Q gi|254780276|r 204 ISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQAL 244 (292)
Q Consensus 204 is~~~n~~P~~~~~l~~~~~~gd~~~A~~l~~~l~~l~~~~ 244 (292)
+.|++.+..|+++-..+...+||.+.+.++.+.+..+...+
T Consensus 110 L~Gl~DltGEL~R~ai~~~~~gd~~~~~~i~~fm~~ly~~f 150 (186)
T pfam01997 110 LLGLFDLTGELMRFALNSVTLGDYERPLEILEFMEELYAGF 150 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98999878799999999983687666999999999999998
No 476
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=58.15 E-value=15 Score=17.39 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=52.9
Q ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 689999999999997699899986723250108999999986543110--123443003674102789999753432102
Q gi|254780276|r 19 IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKT--VASRVPVMAGIGSNNTRESVELAQYAHSIG 96 (292)
Q Consensus 19 iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~--~~~r~pii~gv~~~~~~~~i~~a~~a~~~G 96 (292)
-|.+.-++.++.+.+.+|+|+.+.++.. +.+....+.+.-.-. .+...+-+..|...+-.-....++|..+.|
T Consensus 39 ~~~~~e~~~l~~l~~~~vDGiIl~~~~~-----~~~~~~~l~~~~iPvV~i~~~~~~~~~V~~Dn~~~~~~a~~~L~~~G 113 (259)
T cd01542 39 FSIEKEIEALELLARQKVDGIILLATTI-----TDEHREAIKKLNVPVVVVGQDYPGISSVVYDDYGAGYELGEYLAQQG 113 (259)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCC-----CHHHHHHHHHCCCCEEEECCCCCCCCEEEECHHHHHHHHHHHHHHHC
T ss_conf 9989999999999956999899937777-----75999999966999999598689998899867999999999999828
Q ss_pred CCCCCEEC-CCC-CCCCHHHHHHHHHHHHHHHCC
Q ss_conf 44320012-343-343178899999998753023
Q gi|254780276|r 97 ADALLVVI-PYY-NKPNRRGLLAHFGEIATTVSS 128 (292)
Q Consensus 97 ad~i~v~~-P~~-~~~~~~~i~~~~~~i~~~~~~ 128 (292)
..-+..+. |.. .....+-. +-|++.....++
T Consensus 114 hr~I~~i~~~~~~~~~~~~R~-~G~~~al~~~g~ 146 (259)
T cd01542 114 HKNIAYLGVSESDIAVGILRK-QGYLDALKEHGI 146 (259)
T ss_pred CCEEEEEECCCCCCHHHHHHH-HHHHHHHHHCCC
T ss_conf 985999955865606799999-999999997699
No 477
>PRK02747 consensus
Probab=57.97 E-value=15 Score=17.37 Aligned_cols=79 Identities=15% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 99999999976998999867232501089999999865431101234430036741027899997534321024432001
Q gi|254780276|r 24 FVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVV 103 (292)
Q Consensus 24 ~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~ 103 (292)
-...++++.+.|++-|.+.--.|-. -....-.++++..++.+ .+|+-+|=|=-+.++ ++..-++|||-|.+-
T Consensus 32 P~~~ak~~~~~Gadelh~vDl~~a~--~~~~~~~~lI~~i~~~~--~ipi~vGGGIrs~e~----~~~ll~~GadkViig 103 (257)
T PRK02747 32 PVEAARAYDAAGADELCFLDITASH--ENRGTMLDVVARTAEQC--FMPLTVGGGVRTVDD----IRKLLLAGADKVSIN 103 (257)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCC--CCCHHHHHHHHHHHHHC--CCCEEEECCCCCHHH----HHHHHHCCCCEEEEC
T ss_conf 9999999998699989999476775--67552899999999866--998898488207388----789987699689834
Q ss_pred CCCCCCC
Q ss_conf 2343343
Q gi|254780276|r 104 IPYYNKP 110 (292)
Q Consensus 104 ~P~~~~~ 110 (292)
...+..|
T Consensus 104 s~a~~np 110 (257)
T PRK02747 104 SAAVARP 110 (257)
T ss_pred HHHHHCC
T ss_conf 4465483
No 478
>cd07896 Adenylation_kDNA_ligase_like The Adenylation domain of kDNA ligase and similar proteins, which is involved in kDNA replication or repair, is a component of the catalytic core unit. The mitochondrial DNA of parasitic protozoan is highly unusual. It is termed the kinetoplast DNA (kDNA) and consists of circular DNA molecules (maxicircles) and several thousand smaller circular molecules (minicircles). This group is composed of kDNA ligase, Chlorella virus DNA ligase, and similar proteins. kDNA ligase and Chlorella virus DNA ligase are the smallest known ATP-dependent ligases. They are involved in DNA replication or repair. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation using nicked nucleic acid substrates with the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. They have a highly modular architecture consisting of a unique arrangement of two or more discrete domains. The adenylation and the C-terminal oligouncleotide/olig
Probab=57.87 E-value=15 Score=17.38 Aligned_cols=13 Identities=15% Similarity=0.348 Sum_probs=8.0
Q ss_pred HHHHHCCCCEEEE
Q ss_conf 9999769989998
Q gi|254780276|r 29 EWQITEGSGGLVP 41 (292)
Q Consensus 29 ~~l~~~gv~gi~~ 41 (292)
+|+++-..||+=+
T Consensus 17 ~w~~e~K~DG~R~ 29 (174)
T cd07896 17 GYLVSEKLDGVRA 29 (174)
T ss_pred CEEEEEEECEEEE
T ss_conf 4387651147999
No 479
>pfam03599 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit.
Probab=57.72 E-value=15 Score=17.34 Aligned_cols=104 Identities=16% Similarity=0.215 Sum_probs=44.6
Q ss_pred CCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCHH
Q ss_conf 69989998672325010899999998654311012344300367410278999975343210244320012343343178
Q gi|254780276|r 34 EGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRR 113 (292)
Q Consensus 34 ~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~ 113 (292)
-+++.+.+-..+| +.++..+.++.+.+.+ .+|+|.++.. .+-..+-...+++ --|..+..+.+
T Consensus 67 l~~D~iav~~~s~-----dp~~fa~~vk~V~~~~--~~pliL~~~d--p~vl~aale~~~~--------~rPLlyaAt~~ 129 (384)
T pfam03599 67 LTLDMIAIRLIST-----DPKEFAKAVEKVLQAV--DVPLVIGGSD--PEVLKAALEVAED--------ERPLLYAATLD 129 (384)
T ss_pred CCCCEEEEEECCC-----CHHHHHHHHHHHHHHC--CCCEEEEECC--HHHHHHHHHHHCC--------CCCEEEECCHH
T ss_conf 0233899990789-----9999999999999646--9988998089--9999999997465--------89778548998
Q ss_pred HHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHC
Q ss_conf 89999999875302330121001111121110689997432030233100
Q gi|254780276|r 114 GLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKD 163 (292)
Q Consensus 114 ~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~ 163 (292)
=++=+.+++..-+.|+.+.- .-+.+.+..|.+.+-. .|+|+
T Consensus 130 -N~~~m~~lA~~~~~Pv~v~a-------~~dl~~l~~L~~~l~~-~Gikd 170 (384)
T pfam03599 130 -NYKEIAELALEYKHPVLLWS-------INDLNELKNLNRKLLK-AGVKD 170 (384)
T ss_pred -HHHHHHHHHHHCCCCEEEEC-------CCCHHHHHHHHHHHHH-CCCCC
T ss_conf -99999999997498289974-------8889999999999997-69854
No 480
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=57.51 E-value=15 Score=17.32 Aligned_cols=10 Identities=20% Similarity=0.119 Sum_probs=3.3
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780276|r 230 ALLYQDKLMP 239 (292)
Q Consensus 230 A~~l~~~l~~ 239 (292)
.++.+.++..
T Consensus 170 ~~~~F~~l~~ 179 (222)
T cd00635 170 VRPYFRELRE 179 (222)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 481
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=57.24 E-value=7.3 Score=19.61 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=17.8
Q ss_pred HHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 1111121110689997432030233100122113589999
Q gi|254780276|r 136 PSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQR 175 (292)
Q Consensus 136 P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~ 175 (292)
|+++| |+++++ +|.+.++||.+| |.|++...+-+
T Consensus 295 PPRaG--lD~~t~-~Lv~~y~rIlYI---SCNP~TL~~NL 328 (361)
T TIGR02143 295 PPRAG--LDPDTV-KLVQKYERILYI---SCNPETLKENL 328 (361)
T ss_pred CCCCC--CCHHHH-HHHHHCCCEEEE---ECCHHHHHHHH
T ss_conf 98888--898999-999625987998---46968999999
No 482
>PRK08005 ribulose-phosphate 3-epimerase; Validated
Probab=57.08 E-value=15 Score=17.27 Aligned_cols=171 Identities=16% Similarity=0.082 Sum_probs=78.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 8689999999999997699899986---7232501089999999865431101234430036741027899997534321
Q gi|254780276|r 18 LIDEDAFVEHIEWQITEGSGGLVPA---GTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHS 94 (292)
Q Consensus 18 ~iD~~~~~~~i~~l~~~gv~gi~~~---G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~ 94 (292)
+=|+..+.+.++.+.++|++.+=+= |+.=...++.. .+++...+.. +.|+=++. =+.+.........+
T Consensus 9 ~ad~~~L~~ei~~l~~~g~d~lHiDIMDG~FVPNitfg~----~~v~~ir~~t--~~p~DvHL---Mv~~P~~~i~~~~~ 79 (210)
T PRK08005 9 SADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGM----KTIQAVAQYT--RHPLSFHL---MVSSPQRWLPWLAA 79 (210)
T ss_pred HHCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCH----HHHHHHHHCC--CCCEEEEE---EECCHHHHHHHHHH
T ss_conf 448999999999999779998998288898277456298----9999998618--99807999---86888999999997
Q ss_pred CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCC---------HHHHHHCCC
Q ss_conf 02443200123433431788999999987530233012100111112111068999743203---------023310012
Q gi|254780276|r 95 IGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYP---------NIVGVKDAT 165 (292)
Q Consensus 95 ~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~p---------ni~giK~~~ 165 (292)
+|+|.+.+..-.- ....++. +.|.+. ++-..+==+|. | +.+.+..+..+++ ...|=|.-.
T Consensus 80 ~g~d~it~H~Ea~--~~~~~~i---~~Ik~~-g~k~GlAlnP~-T----~i~~~~~~l~~vD~VLvMtV~PGf~GQ~Fi~ 148 (210)
T PRK08005 80 IRPGWIFIHAESV--QNPSEIL---ADIRAI-GAKAGLALNPA-T----PLLPYRYLALQLDALMIMTSEPDGRGQQFIA 148 (210)
T ss_pred CCCCEEEEECCCC--CCHHHHH---HHHHHC-CCEEEEEECCC-C----CHHHHHHHHHCCCEEEEEEECCCCCCCCCCH
T ss_conf 2998599935677--6999999---999974-98078883799-9----8799873040079899987789998721178
Q ss_pred CCHHHHHHHHHHCCC-CEEECCC-CCCCHHHHHHHCCCCCCCCCC
Q ss_conf 211358999973598-4032013-221001243203344552222
Q gi|254780276|r 166 GKIELVSEQRLSCGF-DFIQLSG-EDSSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 166 ~~~~~~~~~~~~~~~-~~~v~~G-~~~~~~~~~~~G~~G~is~~~ 208 (292)
....++.++++..+. ++.+=.| +..++-.....|++.++.|.+
T Consensus 149 ~~~~KI~~~r~~~~~~~I~vDGGIn~~t~~~~~~aGad~~V~GSa 193 (210)
T PRK08005 149 AMCEKVSQSREHFPAAECWADGGITLRAARLLAAAGAQHLVIGRA 193 (210)
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHCCCCEEEECHH
T ss_conf 899999999962877888997887889999999869999997906
No 483
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=56.96 E-value=15 Score=17.26 Aligned_cols=173 Identities=17% Similarity=0.162 Sum_probs=84.6
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 99999999769989998672325010899999998654311012344300367410278999975343210244320012
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
...++.+.+.|++-+++.--.+= ......-.++++..++.+ .+|+-+|-|=.|.+ .++..-+.|++-+.+..
T Consensus 32 ~~~a~~~~~~g~d~l~i~DLdaa--~~~~~~n~~~I~~I~~~~--~~pi~vGGGIrs~~----~~~~l~~~Ga~kvvi~s 103 (234)
T cd04732 32 VEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLE----DIERLLDLGVSRVIIGT 103 (234)
T ss_pred HHHHHHHHHCCCCEEEEEECCCH--HHCCCCHHHHHHHHHHHC--CCCEEECCCCCCHH----HHHHHHHCCCCEEEECC
T ss_conf 99999999869998999967530--308911599999999767--95689737717599----99999864887189714
Q ss_pred CCCCCCCHHHHHHHHHHHHH-HHCCCCEEEECHH-----HCCCCCCHHHHHHHHHHCCHHHHHH------CC---CCCHH
Q ss_conf 34334317889999999875-3023301210011-----1112111068999743203023310------01---22113
Q gi|254780276|r 105 PYYNKPNRRGLLAHFGEIAT-TVSSPIYIYNNPS-----RTVIEMDVDTMAELAATYPNIVGVK------DA---TGKIE 169 (292)
Q Consensus 105 P~~~~~~~~~i~~~~~~i~~-~~~~pi~iYn~P~-----~~g~~~~~~~l~~L~~~~pni~giK------~~---~~~~~ 169 (292)
..+. +.+.+.+..+..-+ ++-+.+=+.+.-. .....+++..+.+...+.+ +-.+- +. ..|.+
T Consensus 104 ~~~~--~~~~~~~~~~~~G~q~iv~slD~k~~~~~~~~~~~~~~~~~~~~i~~~~~~g-~geiilt~i~~dGt~~G~d~~ 180 (234)
T cd04732 104 AAVK--NPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELG-VKAIIYTDISRDGTLSGPNFE 180 (234)
T ss_pred CHHH--CHHHHHHHHHHCCCCCEEEEEEEECCCHHCCCCCEEECCCHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHH
T ss_conf 0110--8278999999829764699999751200016864001351699999997458-646998764256653568999
Q ss_pred HHHHHHHHCCCCEEECCCCC--CCHHHHHHHCCCCCCCCCC
Q ss_conf 58999973598403201322--1001243203344552222
Q gi|254780276|r 170 LVSEQRLSCGFDFIQLSGED--SSALGFNAHGGVGCISVTA 208 (292)
Q Consensus 170 ~~~~~~~~~~~~~~v~~G~~--~~~~~~~~~G~~G~is~~~ 208 (292)
.+..+.+...-++....|.. ..+......|++|++.|++
T Consensus 181 ll~~i~~~~~~p~i~~GGv~s~~di~~l~~~g~~gvivgsA 221 (234)
T cd04732 181 LYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIVGKA 221 (234)
T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEHH
T ss_conf 99999865799899981899999999999779989999889
No 484
>TIGR01244 TIGR01244 conserved hypothetical protein TIGR01244; InterPro: IPR005939 This is a family of largely hypothetical proteins of unknown function. .
Probab=56.88 E-value=12 Score=18.02 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=37.5
Q ss_pred HHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCC
Q ss_conf 999753432102443200123433431788999999987530233012100111112
Q gi|254780276|r 85 SVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVI 141 (292)
Q Consensus 85 ~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~ 141 (292)
....-.-++.+|.+|. +..|++-+--..+.++-|+...++++-||.-|= +||+
T Consensus 46 ~A~~~aaa~aAG~~Gy-~H~Pv~~g~~~pd~ve~fraa~~aA~~PVLA~C---RsGT 98 (136)
T TIGR01244 46 SAAIKAAAEAAGLTGY-LHLPVTAGDLTPDDVETFRAALEAAESPVLAYC---RSGT 98 (136)
T ss_pred HHHHHHHHHHCCCCCC-EECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEC---CCCH
T ss_conf 2889999985688861-005421788876268999999982289867531---4665
No 485
>pfam02126 PTE Phosphotriesterase family.
Probab=56.87 E-value=16 Score=17.25 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf 99999999999976998999867232
Q gi|254780276|r 21 EDAFVEHIEWQITEGSGGLVPAGTTG 46 (292)
Q Consensus 21 ~~~~~~~i~~l~~~gv~gi~~~G~tG 46 (292)
.+...+.++.+.+.|++.|+=+-..|
T Consensus 37 ~~~~i~el~~fk~~Gg~tiVd~T~~g 62 (308)
T pfam02126 37 VAAIREELLYLKARGVRTIVENTTTG 62 (308)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf 99999999999982898799568977
No 486
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=56.81 E-value=13 Score=17.82 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCC---CCEE-EECHHHCCCCCCHHHHHHHH
Q ss_conf 9975343210244320012343343178899999998753023---3012-10011111211106899974
Q gi|254780276|r 86 VELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSS---PIYI-YNNPSRTVIEMDVDTMAELA 152 (292)
Q Consensus 86 i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~---pi~i-Yn~P~~~g~~~~~~~l~~L~ 152 (292)
+-.-+.++...+|+|...--..- +--.||..||+++.. .+-+ |+.|...|+ ++++...+..
T Consensus 61 l~a~~La~~~~yDAvv~lG~VIr-----G~T~Hfd~Va~~~~~gl~~vsl~~~~PV~~GV-Lt~~~~eqA~ 125 (152)
T COG0054 61 LAAKKLARTGKYDAVVALGAVIR-----GETYHFDYVANEVARGLMDVSLETGVPVTFGV-LTTDNIEQAI 125 (152)
T ss_pred HHHHHHHHCCCCCEEEEEEEEEE-----CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHHHH
T ss_conf 99999973189566999646981-----79740899998999999998874099758662-3788699999
No 487
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=56.49 E-value=16 Score=17.20 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=73.4
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCH-----HHHHHHHHHHHHH-CCCC
Q ss_conf 999999997699899986723250108999999986543110123443003674102-----7899997534321-0244
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNN-----TRESVELAQYAHS-IGAD 98 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~-----~~~~i~~a~~a~~-~Gad 98 (292)
...++..-+.||..+++.|+. .++...+++.+-+. + ++-.-+|+--.. -.+.-++-+.+.+ -.+-
T Consensus 20 ~~vi~~a~~~gv~~~~~~g~~-------~~~~~~~~~la~~y-~-~v~~~~G~HP~~~~~~~~~~~~~l~~~~~~~~~vv 90 (256)
T COG0084 20 DEVIARAREAGVKKMVVVGTD-------LEDFKRALELAEKY-P-NVYAAVGVHPLDADEHSEEDLEELEQLAEHHPKVV 90 (256)
T ss_pred HHHHHHHHHCCCCEEEEEECC-------HHHHHHHHHHHHHC-C-CEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 999999998599379996158-------88889999999868-9-86899866887333367889999999872189858
Q ss_pred CC-CEECCCCCCCC-----HHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHH
Q ss_conf 32-00123433431-----7889999999875302330121001111121110689997432030233100122113589
Q gi|254780276|r 99 AL-LVVIPYYNKPN-----RRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVS 172 (292)
Q Consensus 99 ~i-~v~~P~~~~~~-----~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~ 172 (292)
+| -+..-||+..+ |.++++.+-++|...++|++++.= . ..+.+.++.++..-
T Consensus 91 aIGEiGLDy~~~~~~~~~~Q~~~F~~ql~lA~~~~lPviIH~R---~----A~~d~~~iL~~~~~--------------- 148 (256)
T COG0084 91 AIGEIGLDYYWDKEPDKERQEEVFEAQLELAKELNLPVIIHTR---D----AHEDTLEILKEEGA--------------- 148 (256)
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECC---C----CHHHHHHHHHHCCC---------------
T ss_conf 9983346856566644789999999999999973997799867---4----27999999986487---------------
Q ss_pred HHHHHCCCCEEECCCCCCCHHHHHHHCC
Q ss_conf 9997359840320132210012432033
Q gi|254780276|r 173 EQRLSCGFDFIQLSGEDSSALGFNAHGG 200 (292)
Q Consensus 173 ~~~~~~~~~~~v~~G~~~~~~~~~~~G~ 200 (292)
..+.-+.+|+|+-+++-..+.+|.
T Consensus 149 ----~~~gi~HcFsGs~e~a~~~~d~G~ 172 (256)
T COG0084 149 ----PVGGVLHCFSGSAEEARKLLDLGF 172 (256)
T ss_pred ----CCCEEEECCCCCHHHHHHHHHCCE
T ss_conf ----888899837897999999997692
No 488
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039 This entry describes a small family of highly conserved proteins (>60 0dentity). Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in this subfamily..
Probab=56.42 E-value=16 Score=17.19 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHHCCCC--------------EEEECCCC---CCHHCCCHHHHHHHHHH
Q ss_conf 886899999999999976998--------------99986723---25010899999998654
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSG--------------GLVPAGTT---GESSTLSHEEHCRIIEL 62 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~--------------gi~~~G~t---GE~~~Ls~~Er~~~~~~ 62 (292)
|.||...|...++||-.+.|. |+++=--+ .||.+||.+|-..+++.
T Consensus 59 G~INI~TLP~I~~WL~~H~VPyDEI~vGKPWCG~dGFYvDDRAiRP~EF~~L~~d~I~~l~~~ 121 (126)
T TIGR01689 59 GKINIHTLPIIIDWLNQHNVPYDEIYVGKPWCGHDGFYVDDRAIRPEEFSSLTYDEIKKLTKI 121 (126)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHH
T ss_conf 412120212688787506998452664487418888355253338212201577899888753
No 489
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=56.21 E-value=16 Score=17.17 Aligned_cols=25 Identities=16% Similarity=0.050 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHHHHHHC-CCCEEE
Q ss_conf 8886899999999999976-998999
Q gi|254780276|r 16 GNLIDEDAFVEHIEWQITE-GSGGLV 40 (292)
Q Consensus 16 d~~iD~~~~~~~i~~l~~~-gv~gi~ 40 (292)
|..-|.+.-...++.|++. +|..++
T Consensus 51 D~~~~p~~a~~~a~~Li~~d~V~~vi 76 (345)
T cd06338 51 DDQSNPARAARAYERLITQDKVDFLL 76 (345)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 79999899999999999618953997
No 490
>TIGR01481 ccpA catabolite control protein A; InterPro: IPR006377 Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [e.g. acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.; GO: 0030528 transcription regulator activity, 0045449 regulation of transcription.
Probab=56.20 E-value=11 Score=18.28 Aligned_cols=98 Identities=15% Similarity=0.165 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCC-CCCC---CH-------HHHHHHH
Q ss_conf 89999999999997699899986723250108999999986543110123443003-6741---02-------7899997
Q gi|254780276|r 20 DEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMA-GIGS---NN-------TRESVEL 88 (292)
Q Consensus 20 D~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~-gv~~---~~-------~~~~i~~ 88 (292)
|.+.=.+.++.|+++.||||..+|.. +|++=|..+-+ .++||+. |+-+ .. ++-+.|-
T Consensus 101 ~~ekE~~v~NTLl~KQVDGiIfmG~~-----Ite~~re~F~r-------s~~PVVLAGt~D~~~~~pSVNIDy~~A~kEa 168 (332)
T TIGR01481 101 DEEKEVQVLNTLLSKQVDGIIFMGGE-----ITEKLREEFSR-------SPVPVVLAGTVDKENELPSVNIDYKQATKEA 168 (332)
T ss_pred CCCCHHHHHHHHHHHHCCEEEECCHH-----HHHHHHHHHHC-------CCCCEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 87521676665331010113444302-----10899999712-------8998899535486546773101678999999
Q ss_pred HHHHHHCCCCCCCE-ECCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 53432102443200-123433431788999999987530233
Q gi|254780276|r 89 AQYAHSIGADALLV-VIPYYNKPNRRGLLAHFGEIATTVSSP 129 (292)
Q Consensus 89 a~~a~~~Gad~i~v-~~P~~~~~~~~~i~~~~~~i~~~~~~p 129 (292)
....-+.|..-|-+ .-|.--..+-+--..=|++..+..+++
T Consensus 169 v~~l~~~GhK~iAfv~G~L~~~~N~~~~l~GykE~L~~~gI~ 210 (332)
T TIGR01481 169 VKELIAKGHKKIAFVSGSLSDSVNGEVRLEGYKEALKKAGIA 210 (332)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCEECCCHHHHHHHHCCCC
T ss_conf 999863358268887367571104520133046788736874
No 491
>PRK03262 consensus
Probab=56.11 E-value=16 Score=17.16 Aligned_cols=81 Identities=22% Similarity=0.230 Sum_probs=39.2
Q ss_pred CCCCCCCCHHHHHHHHHHHH-HHCCCCCCCEECCCCCCC----------------CHHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 00367410278999975343-210244320012343343----------------17889999999875302-3301210
Q gi|254780276|r 73 VMAGIGSNNTRESVELAQYA-HSIGADALLVVIPYYNKP----------------NRRGLLAHFGEIATTVS-SPIYIYN 134 (292)
Q Consensus 73 ii~gv~~~~~~~~i~~a~~a-~~~Gad~i~v~~P~~~~~----------------~~~~i~~~~~~i~~~~~-~pi~iYn 134 (292)
|++|-| .++.|.+.-++ -+-|-|.|++.+|.|.-. .++.-.+ ...+.++.+ ..+++--
T Consensus 77 I~vGnG---SdE~I~~i~~~f~~pg~d~vl~~~PtF~~Y~~~a~~~g~~~~~vp~~~~~~~d-l~~~~~~~~~~klv~l~ 152 (355)
T PRK03262 77 VLVSRG---ADEGIELLIRAFCEPGKDAILYCPPTYGMYAVSAETIGVEIRTVPTLENWQLD-LQAIADNLDGVKVVYVC 152 (355)
T ss_pred EEEECC---HHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCC-HHHHHHHCCCCCEEEEC
T ss_conf 999378---99999999999863899779977888599999999739838996465566768-99999640488889976
Q ss_pred CHH-HCCCCCCHHHHHHHHHHCCH
Q ss_conf 011-11121110689997432030
Q gi|254780276|r 135 NPS-RTVIEMDVDTMAELAATYPN 157 (292)
Q Consensus 135 ~P~-~~g~~~~~~~l~~L~~~~pn 157 (292)
+|. .||..++.+.+.++++..|+
T Consensus 153 nPNNPTG~~~~~~el~~l~~~~~~ 176 (355)
T PRK03262 153 SPNNPTGNLINPQDLRTLLELTRG 176 (355)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 899987644699999999976876
No 492
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=55.55 E-value=16 Score=17.10 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=20.7
Q ss_pred HHHHHHHHCCCCCCCEE-CCCC---CCC-CHHHHHHHHHHHHHHH
Q ss_conf 97534321024432001-2343---343-1788999999987530
Q gi|254780276|r 87 ELAQYAHSIGADALLVV-IPYY---NKP-NRRGLLAHFGEIATTV 126 (292)
Q Consensus 87 ~~a~~a~~~Gad~i~v~-~P~~---~~~-~~~~i~~~~~~i~~~~ 126 (292)
...+.+++.|.|||-+= -++. ..+ ..+...++.++++++.
T Consensus 99 ~iv~~~~~~gfDGidiD~w~~~~~~~~~~~~~~~~~fv~el~~~l 143 (318)
T cd02876 99 LLVTTAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETL 143 (318)
T ss_pred HHHHHHHHHCCCCEEEECCHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999981998588823100143368768999999999999999
No 493
>PRK09125 DNA ligase; Provisional
Probab=55.35 E-value=16 Score=17.07 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEECC
Q ss_conf 9999999865431101234-43003674102789999753432102443200123
Q gi|254780276|r 52 SHEEHCRIIELCVKTVASR-VPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP 105 (292)
Q Consensus 52 s~~Er~~~~~~~~~~~~~r-~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~P 105 (292)
+.+||.+.++..++..+.. +.++.+....+.++.-++-+.+.+.|..|+|+--|
T Consensus 125 pf~eR~~~L~~ll~~~~~~~l~~v~q~~v~~~~~l~~~l~~~~~~G~EGlmlr~~ 179 (277)
T PRK09125 125 DFEERLAVLRKLLAKLPSPYLKIIEQIPVDSEEALLQFLDQIVAAGGEGLMLHRP 179 (277)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 9999999999999658997189984589799999999999999679838778879
No 494
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=55.09 E-value=17 Score=17.05 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHC-CCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999999976-99899986723250108999999986543110123443003674102789999753432102443
Q gi|254780276|r 21 EDAFVEHIEWQITE-GSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99 (292)
Q Consensus 21 ~~~~~~~i~~l~~~-gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~ 99 (292)
+...++.+..+... .-+-+++.||..+.+ ..++...++.-+.-+-+..|.-+. .+++.|+..|.+.
T Consensus 34 ~~~~~~~L~~~~~~~~~~~v~~~gsgt~a~-------ea~~~n~~~~~~kvlv~~~G~fg~------r~~~~a~~~g~~~ 100 (356)
T cd06451 34 MDEILEGLRYVFQTENGLTFLLSGSGTGAM-------EAALSNLLEPGDKVLVGVNGVFGD------RWADMAERYGADV 100 (356)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCHHHHH-------HHHHHHCCCCCCCEEEEEEEECCC------CHHHHHHHCCCCE
T ss_conf 999999999995899984899957708999-------999985268888147885304054------1676441159723
Q ss_pred CCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 20012343343178899999998753023301210011111211106899974320302331001221135899997359
Q gi|254780276|r 100 LLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG 179 (292)
Q Consensus 100 i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK~~~~~~~~~~~~~~~~~ 179 (292)
..+-.|+--..+.+++.+..++ ...+. +.+.++-..||+..+.+.+.+++++++-+..+ |++.......--....+
T Consensus 101 ~~i~~~~~~~~~~~~v~~~l~~--~~~~~-v~~~h~etstG~~~~l~~i~~~~~~~~~~~~v-Davss~g~~~id~~~~g 176 (356)
T cd06451 101 DVVEKPWGEAVSPEEIAEALEQ--HDIKA-VTLTHNETSTGVLNPLEGIGALAKKHDALLIV-DAVSSLGGEPFRMDEWG 176 (356)
T ss_pred EEEECCCCCCCCHHHHHHHHHC--CCCCE-EEEECCCCCCCCCCCHHHHHHHHHHCCEEEEE-ECCHHHCCCCCCCCCCC
T ss_conf 9986899997898999988633--89658-99966536510147758899987415727997-25311055650256666
Q ss_pred CCEEECCCC
Q ss_conf 840320132
Q gi|254780276|r 180 FDFIQLSGE 188 (292)
Q Consensus 180 ~~~~v~~G~ 188 (292)
-++.+.+++
T Consensus 177 iD~~~~ssq 185 (356)
T cd06451 177 VDVAYTGSQ 185 (356)
T ss_pred EEEEEECCC
T ss_conf 059997688
No 495
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=54.94 E-value=17 Score=17.03 Aligned_cols=72 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHCCCHHHHHHHHHHHHH-CCCCCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCCCCE-----------ECCCCCCCCHH
Q ss_conf 010899999998654311-01234430036--74102789999753432102443200-----------12343343178
Q gi|254780276|r 48 SSTLSHEEHCRIIELCVK-TVASRVPVMAG--IGSNNTRESVELAQYAHSIGADALLV-----------VIPYYNKPNRR 113 (292)
Q Consensus 48 ~~~Ls~~Er~~~~~~~~~-~~~~r~pii~g--v~~~~~~~~i~~a~~a~~~Gad~i~v-----------~~P~~~~~~~~ 113 (292)
++.+|.+|..++++.... ...+.+-++.| -.+...+.-.++++.+++.|+.-++= .+|...+|+.+
T Consensus 108 Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~ 187 (310)
T COG1105 108 GPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNRE 187 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCEEECCHH
T ss_conf 99889999999999999756648899990889999997999999999986598399979859999987079938945889
Q ss_pred HHHHHH
Q ss_conf 899999
Q gi|254780276|r 114 GLLAHF 119 (292)
Q Consensus 114 ~i~~~~ 119 (292)
|+...|
T Consensus 188 EL~~~~ 193 (310)
T COG1105 188 ELEALF 193 (310)
T ss_pred HHHHHH
T ss_conf 999996
No 496
>pfam00809 Pterin_bind Pterin binding enzyme. This family includes a variety of pterin binding enzymes that all adopt a TIM barrel fold. The family includes dihydropteroate synthase EC:2.5.1.15 as well as a group methyltransferase enzymes including methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) that catalyses a key step in the Wood-Ljungdahl pathway of carbon dioxide fixation. It transfers the N5-methyl group from methyltetrahydrofolate (CH3-H4folate) to a cob(I)amide centre in another protein, the corrinoid iron-sulfur protein. MeTr is a member of a family of proteins that includes methionine synthase and methanogenic enzymes that activate the methyl group of methyltetra-hydromethano(or -sarcino)pterin.
Probab=54.78 E-value=17 Score=17.01 Aligned_cols=90 Identities=21% Similarity=0.271 Sum_probs=0.0
Q ss_pred EECCCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEECCCC---CCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 11120177389888-689999999999997699899986723---25010899999998654311012344300367410
Q gi|254780276|r 5 SIPALITPFTKGNL-IDEDAFVEHIEWQITEGSGGLVPAGTT---GESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSN 80 (292)
Q Consensus 5 i~~~~~TPf~~d~~-iD~~~~~~~i~~l~~~gv~gi~~~G~t---GE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~ 80 (292)
|+..-+--|-+++. .+.+...++++.+++.|++-|=++|-. |-..-=..+|..++...+......++|+-+=+...
T Consensus 1 IlNiTpDSFsdgg~~~~~~~a~~~a~~~i~~GAdiIDIG~eSTrPga~~v~~~eE~~Rl~pvl~~l~~~~~~iSIDT~~~ 80 (208)
T pfam00809 1 ILNVTPDSFSDGGKFLSPDKALEQAREMVEEGADIIDIGGESTRPGAGMVSGEEELERLVPVLEALRDQDVPISIDTFNA 80 (208)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCH
T ss_conf 97688999999877789999999999999879989986897689998646889999999999998635798289979849
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 27899997534321024432
Q gi|254780276|r 81 NTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 81 ~~~~~i~~a~~a~~~Gad~i 100 (292)
+-++.|-++|++.|
T Consensus 81 ------~v~~~al~~G~~iI 94 (208)
T pfam00809 81 ------EVAEAALKAGADII 94 (208)
T ss_pred ------HHHHHHHHCCCCEE
T ss_conf ------99999998199389
No 497
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=54.75 E-value=16 Score=17.14 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH
Q ss_conf 89999753432102443200123433431788999999987530233012100111112111068999743203023310
Q gi|254780276|r 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK 162 (292)
Q Consensus 83 ~~~i~~a~~a~~~Gad~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK 162 (292)
....+..+..++.|+.+-+.+ +++.-.+....+.+.+|.=+++==+|...|-.+-++.+.|+. +..+.
T Consensus 93 ~~~~~~i~~Ik~~g~k~GlAl-------nP~Tpi~~i~~~l~~vD~VLvMsV~PGf~GQ~Fi~~~l~KI~-~lr~~---- 160 (227)
T PRK09722 93 GQAFRLIDEIRRAGMKVGLVL-------NPETPVEAIKYYIHLADKVTVMTVDPGFAGQPFIPEMLDKIA-ELKAW---- 160 (227)
T ss_pred CCHHHHHHHHHHCCCCEEEEE-------CCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHHHHHHH-HHHHH----
T ss_conf 659999999998699722333-------899986688766743798999988899987656688999999-99999----
Q ss_pred CCCCCHHHHHHHHHHCCCCEEECCC-CCCCHHHHHHHCCCCCCCCCCCCCC--CHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 0122113589999735984032013-2210012432033445522223211--0024444431178827999999
Q gi|254780276|r 163 DATGKIELVSEQRLSCGFDFIQLSG-EDSSALGFNAHGGVGCISVTANVVP--RICAEFQQAMIRGDYRQALLYQ 234 (292)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~v~~G-~~~~~~~~~~~G~~G~is~~~n~~P--~~~~~l~~~~~~gd~~~A~~l~ 234 (292)
.-.+..+-.+.+=.| +..++-.....|++-+++|++.+|- +-+.+-++.+++.-.++..++|
T Consensus 161 ----------~~~~~~~~~I~VDGGI~~~~i~~~~~aGAd~~V~GssaiF~~~~~i~~~~~~l~~~~~~~~~~~~ 225 (227)
T PRK09722 161 ----------REREGLEYEIEVDGSCNQKTYEKLMAAGADVFIVGTSGLFNHAENIDEAWDIMTAQILAATSEVQ 225 (227)
T ss_pred ----------HHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf ----------98259982699989888999999998699999977489748999999999999999999863216
No 498
>TIGR02146 LysS_fung_arch homocitrate synthase; InterPro: IPR011872 This entry includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus . This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs .; GO: 0046912 transferase activity transferring acyl groups acyl groups converted into alkyl on transfer, 0019752 carboxylic acid metabolic process.
Probab=54.72 E-value=17 Score=17.01 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 389888--689999999999997699899986723250108999999986543110123443003674102789999753
Q gi|254780276|r 13 FTKGNL--IDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQ 90 (292)
Q Consensus 13 f~~d~~--iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~ 90 (292)
|+..++ =|++-|.+.++-.-+.|+|=+-+.-|+| .+++..-.++++.++..++.++++=+++ ++++--++.-|-
T Consensus 134 FtaED~~R~d~~~L~~v~k~a~~~~vDRVsiADTvG---~~~P~~~y~L~~~v~~~VGpg~~~~~H~-HND~G~A~ANA~ 209 (355)
T TIGR02146 134 FTAEDTFRSDLDDLLKVYKTAKEAGVDRVSIADTVG---VATPRRVYELVRKVKRVVGPGVDIEIHA-HNDLGLAIANAL 209 (355)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCC---CCCCHHHHHHHHHHHHHCCCCCCEEEEE-ECCHHHHHHHHH
T ss_conf 647888512189999999999761888567513436---7880689999999986408876435630-175779999999
Q ss_pred HHHHCCCCCC
Q ss_conf 4321024432
Q gi|254780276|r 91 YAHSIGADAL 100 (292)
Q Consensus 91 ~a~~~Gad~i 100 (292)
.|-+.||+-|
T Consensus 210 ~AiEGGA~~v 219 (355)
T TIGR02146 210 AAIEGGATVV 219 (355)
T ss_pred HHHHCCCEEE
T ss_conf 8753088089
No 499
>PRK06247 pyruvate kinase; Provisional
Probab=54.62 E-value=17 Score=16.99 Aligned_cols=106 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEC
Q ss_conf 99999999769989998672325010899999998654311012344300367410278999975343210244320012
Q gi|254780276|r 25 VEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVI 104 (292)
Q Consensus 25 ~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i~v~~ 104 (292)
++.++|-++.|+|.+. ||+-...+-++.+.+..+++.+||+-+-...--+-++..-.+ +|||||.-
T Consensus 176 ~~di~~a~~~~vD~ia----------lSFVrsa~DV~~vr~~l~~~~~IIaKIE~~~av~NldeIi~~----sDgIMVAR 241 (477)
T PRK06247 176 RADLEFALELGVDWVA----------LSFVQRPEDVEEVRKVIGGRVPVMAKIEKPQAVDRLEAIVEA----SDAIMVAR 241 (477)
T ss_pred HHHHHHHHHCCCCEEE----------ECCCCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHH----HCEEEEEC
T ss_conf 9999989975999999----------757698789999998658765089996388787748999986----17789965
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHH---CCCCEEE--------ECHHHCCCCCC
Q ss_conf 343-3431788999999987530---2330121--------00111112111
Q gi|254780276|r 105 PYY-NKPNRRGLLAHFGEIATTV---SSPIYIY--------NNPSRTVIEMD 144 (292)
Q Consensus 105 P~~-~~~~~~~i~~~~~~i~~~~---~~pi~iY--------n~P~~~g~~~~ 144 (292)
-.. -..+-+++...=+.|...+ ..|+++- ++|..|...++
T Consensus 242 GDLgvEi~~e~vp~~Qk~ii~~~~~~gKpvivATqmLeSM~~~p~PTRAEv~ 293 (477)
T PRK06247 242 GDLGVEVPLESVPLIQKRIIRMAREAGKPVVVATQMLESMIESPVPTRAEVS 293 (477)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCCCCHHHHH
T ss_conf 8654557988979999999999986299699971508874379998658787
No 500
>TIGR03586 PseI pseudaminic acid synthase.
Probab=54.58 E-value=17 Score=16.99 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=0.0
Q ss_pred ECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11201773898886899999999999976998999867232501089999999865431101234430036741027899
Q gi|254780276|r 6 IPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRES 85 (292)
Q Consensus 6 ~~~~~TPf~~d~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~ 85 (292)
+..+.|||+ ..-++++.+-|++.+=+ ..+|...... .-+.++-..|++..+|..+..|.
T Consensus 91 I~f~~t~fd----------~~s~~~l~~l~~~~~KI--aS~d~~n~~L---------i~~iak~~kpviiStG~s~~~EI 149 (327)
T TIGR03586 91 LTIFSSPFD----------ETAVDFLESLDVPAYKI--ASFEITDLPL---------IRYVAKTGKPIIMSTGIATLEEI 149 (327)
T ss_pred CEEEECCCC----------HHHHHHHHHCCCCEEEE--CCHHHCCHHH---------HHHHHCCCCCEEEECCCCCHHHH
T ss_conf 979978899----------79999998707995998--9415366569---------99986648867996888754567
Q ss_pred HHHHHHHHHCCCC--CCCEECCCCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 9975343210244--3200123433431788999999987530233012
Q gi|254780276|r 86 VELAQYAHSIGAD--ALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYI 132 (292)
Q Consensus 86 i~~a~~a~~~Gad--~i~v~~P~~~~~~~~~i~~~~~~i~~~~~~pi~i 132 (292)
.+..+..++.|.. .+|=....|-.+.++-=......+.+.-+.|+.+
T Consensus 150 ~~av~~~~~~~~~~i~llhC~s~YPt~~~~~nL~~I~~lk~~f~~~vG~ 198 (327)
T TIGR03586 150 EEAVEAAREAGCKDLVLLKCTSSYPAPLEDANLRTIPDLAERFNVPVGL 198 (327)
T ss_pred HHHHHHHHHHCCCCEEECCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEE
T ss_conf 8888877650255715652585899893774367899999974997583
Done!