HHsearch alignment for GI: 254780276 and conserved domain: pfam01207
>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=96.25 E-value=0.14 Score=32.15 Aligned_cols=257 Identities=14% Similarity=0.176 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHCCCCEEEECCC-CCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999999769989998672-32501089999999865431101234430036741027899997534321024432
Q gi|254780276|r 22 DAFVEHIEWQITEGSGGLVPAGT-TGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADAL 100 (292)
Q Consensus 22 ~~~~~~i~~l~~~gv~gi~~~G~-tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i 100 (292)
T Consensus 11 ~~fR~l~~~---~g~~~l~~TEmv~a~~l~~~~~~~~~~----~~~~~~e~P~~~Ql~G~dp~~~~~aa~~~~~~g~d~I 83 (309)
T pfam01207 11 LPFRRLVRE---YGAGDLVVTEMVTAKAQLRPEKQRELM----LPELEEPTPLAVQLGGSDPALLAEAAKLVADLGADII 83 (309)
T ss_pred HHHHHHHHH---HCCCCEEEECCEEEHHHHCCCHHHHHH----CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf 999999999---795929997989971354388758874----2007678972899936999999999999886399989
Q ss_pred CE--ECCCCC----------CCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------
Q ss_conf 00--123433----------431788999999987530233012100111112111068999743203023310------
Q gi|254780276|r 101 LV--VIPYYN----------KPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------ 162 (292)
Q Consensus 101 ~v--~~P~~~----------~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------ 162 (292)
T Consensus 84 DlN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK---~RlG~d~~~~~~~~~~~~l~~-~G~~~itvH~ 159 (309)
T pfam01207 84 DINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVK---IRIGWDESHENAVEIARRVED-AGAQALTVHG 159 (309)
T ss_pred EEECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEE---EECCCCCCHHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf 651899999987899776254177899999999997558854675---433788763889999999984-6888799967
Q ss_pred -------CCCCCHHHHHHHHHHCCCCEEECCCCCCC---HHHHHH-HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH--
Q ss_conf -------01221135899997359840320132210---012432-0334455222232-110024444431178827--
Q gi|254780276|r 163 -------DATGKIELVSEQRLSCGFDFIQLSGEDSS---ALGFNA-HGGVGCISVTANV-VPRICAEFQQAMIRGDYR-- 228 (292)
Q Consensus 163 -------~~~~~~~~~~~~~~~~~~~~~v~~G~~~~---~~~~~~-~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~-- 228 (292)
T Consensus 160 Rt~~q~~~g~a~w~~i~~~k~~~~ipv-i~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPwif~~~~~~~-~~~~~~~ 237 (309)
T pfam01207 160 RTRAQNYEGPADWDAIKQVKQAVSIPV-IANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQHTVK-TGEFDPR 237 (309)
T ss_pred CCHHHCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHH-CCCCCCC
T ss_conf 632402678654189999998589828-98089488999999986109999998489774988889889997-3997899
Q ss_pred -HHHH---HHHHHHHHH-HHHHCCCCHH-HHHHHHH-HCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHC
Q ss_conf -9999---999999999-9984268938-9999999-8698899876788889879-89999999999855
Q gi|254780276|r 229 -QALL---YQDKLMPLH-QALFMEPAVC-CVKYALS-RLGRNVSLAVRSPMVSTLE-KDTMIAIDQALERL 291 (292)
Q Consensus 229 -~A~~---l~~~l~~l~-~~~~~~~~~~-~~K~~l~-~~G~~~~~~~R~Pl~~~~~-~e~~~~i~~~l~~l 291 (292)
T Consensus 238 ~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~rk~~~~y~kg~~ga~~~R~~l~~~~~~~e~~~~le~~l~~~ 308 (309)
T pfam01207 238 PPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYLKGFPGAAELRRELNDVFDPTEALINLDAALRAA 308 (309)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 98689999999999999998758986999999999997799788999999836999999999999999851