HHsearch alignment for GI: 254780276 and conserved domain: pfam01207

>pfam01207 Dus Dihydrouridine synthase (Dus). Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 from Saccharomyces cerevisiae acts on pre-tRNA-Phe, while Dus 2 acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD. Some family members may be targeted to the mitochondria and even have a role in mitochondria.
Probab=96.25  E-value=0.14  Score=32.15  Aligned_cols=257  Identities=14%  Similarity=0.176  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCC-CCCHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf             99999999999769989998672-32501089999999865431101234430036741027899997534321024432
Q gi|254780276|r   22 DAFVEHIEWQITEGSGGLVPAGT-TGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADAL  100 (292)
Q Consensus        22 ~~~~~~i~~l~~~gv~gi~~~G~-tGE~~~Ls~~Er~~~~~~~~~~~~~r~pii~gv~~~~~~~~i~~a~~a~~~Gad~i  100 (292)
T Consensus        11 ~~fR~l~~~---~g~~~l~~TEmv~a~~l~~~~~~~~~~----~~~~~~e~P~~~Ql~G~dp~~~~~aa~~~~~~g~d~I   83 (309)
T pfam01207        11 LPFRRLVRE---YGAGDLVVTEMVTAKAQLRPEKQRELM----LPELEEPTPLAVQLGGSDPALLAEAAKLVADLGADII   83 (309)
T ss_pred             HHHHHHHHH---HCCCCEEEECCEEEHHHHCCCHHHHHH----CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEE
T ss_conf             999999999---795929997989971354388758874----2007678972899936999999999999886399989


Q ss_pred             CE--ECCCCC----------CCCHHHHHHHHHHHHHHHCCCCEEEECHHHCCCCCCHHHHHHHHHHCCHHHHHH------
Q ss_conf             00--123433----------431788999999987530233012100111112111068999743203023310------
Q gi|254780276|r  101 LV--VIPYYN----------KPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVK------  162 (292)
Q Consensus       101 ~v--~~P~~~----------~~~~~~i~~~~~~i~~~~~~pi~iYn~P~~~g~~~~~~~l~~L~~~~pni~giK------  162 (292)
T Consensus        84 DlN~GCP~~~v~~~g~GsaLl~~p~~~~~iv~a~~~~~~~PVtvK---~RlG~d~~~~~~~~~~~~l~~-~G~~~itvH~  159 (309)
T pfam01207        84 DINMGCPAKKVTRGGAGAALLRDPDLVAQIVKAVVKAVDIPVTVK---IRIGWDESHENAVEIARRVED-AGAQALTVHG  159 (309)
T ss_pred             EEECCCCHHHHCCCCCCEEHHHCHHHHHHHHHHHHHHCCCCEEEE---EECCCCCCHHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf             651899999987899776254177899999999997558854675---433788763889999999984-6888799967


Q ss_pred             -------CCCCCHHHHHHHHHHCCCCEEECCCCCCC---HHHHHH-HCCCCCCCCCCCC-CCCHHHHHHHHHCCCCCH--
Q ss_conf             -------01221135899997359840320132210---012432-0334455222232-110024444431178827--
Q gi|254780276|r  163 -------DATGKIELVSEQRLSCGFDFIQLSGEDSS---ALGFNA-HGGVGCISVTANV-VPRICAEFQQAMIRGDYR--  228 (292)
Q Consensus       163 -------~~~~~~~~~~~~~~~~~~~~~v~~G~~~~---~~~~~~-~G~~G~is~~~n~-~P~~~~~l~~~~~~gd~~--  228 (292)
T Consensus       160 Rt~~q~~~g~a~w~~i~~~k~~~~ipv-i~NGdi~~~~d~~~~l~~tg~dgvMigRga~~nPwif~~~~~~~-~~~~~~~  237 (309)
T pfam01207       160 RTRAQNYEGPADWDAIKQVKQAVSIPV-IANGDITDAEDAQRCLSYTGADGVMIGRGALGNPWLFAEQHTVK-TGEFDPR  237 (309)
T ss_pred             CCHHHCCCCCCCHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHCCCEEEECHHHHHCCHHHHHHHHHH-CCCCCCC
T ss_conf             632402678654189999998589828-98089488999999986109999998489774988889889997-3997899


Q ss_pred             -HHHH---HHHHHHHHH-HHHHCCCCHH-HHHHHHH-HCCCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHC
Q ss_conf             -9999---999999999-9984268938-9999999-8698899876788889879-89999999999855
Q gi|254780276|r  229 -QALL---YQDKLMPLH-QALFMEPAVC-CVKYALS-RLGRNVSLAVRSPMVSTLE-KDTMIAIDQALERL  291 (292)
Q Consensus       229 -~A~~---l~~~l~~l~-~~~~~~~~~~-~~K~~l~-~~G~~~~~~~R~Pl~~~~~-~e~~~~i~~~l~~l  291 (292)
T Consensus       238 ~~~~e~~~~~~~~~~~~~~~~g~~~~~~~~rk~~~~y~kg~~ga~~~R~~l~~~~~~~e~~~~le~~l~~~  308 (309)
T pfam01207       238 PPLAEEAEIVLEHLSYLEEFYGEDKGLRHARKHLAWYLKGFPGAAELRRELNDVFDPTEALINLDAALRAA  308 (309)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf             98689999999999999998758986999999999997799788999999836999999999999999851