HHsearch alignment for GI: 254780276 and conserved domain: pfam06187
>pfam06187 DUF993 Protein of unknown function (DUF993). This family consists of several hypothetical bacterial proteins of unknown function.
Probab=98.44 E-value=3e-05 Score=58.76 Aligned_cols=247 Identities=17% Similarity=0.168 Sum_probs=168.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCCHHHHHHHHHHHHHCCCCC-CCCCCCCCC--------CHHHHH--
Q ss_conf 886899999999999976998999867232501089999999865431101234-430036741--------027899--
Q gi|254780276|r 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASR-VPVMAGIGS--------NNTRES-- 85 (292)
Q Consensus 17 ~~iD~~~~~~~i~~l~~~gv~gi~~~G~tGE~~~Ls~~Er~~~~~~~~~~~~~r-~pii~gv~~--------~~~~~~-- 85 (292)
T Consensus 53 ~aiDWdaTlafR~~Lws~GLGVAEAMDTAQRGMGLdW~~a~ELIrRs~~ea~~~g~~ia~G~GTDhL~p~~~~~ld~V~~ 132 (382)
T pfam06187 53 PAIDWDATLAFRHHLWSLGLGVAEAMDTAQRGMGLDWAAARELIRRSLAEARAVGGRVACGAGTDHLAPSPAATLDDVIA 132 (382)
T ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCHHHHHH
T ss_conf 55685989999999997143288887777503899937899999998988863488477314767789878889999999
Q ss_pred --HHHHHHHHHCCCCCCCEECCCCC--CCCHHHHHHHHHHHHHHHCCCCEEEE-----CHHHCCC------CCCHHHHHH
Q ss_conf --99753432102443200123433--43178899999998753023301210-----0111112------111068999
Q gi|254780276|r 86 --VELAQYAHSIGADALLVVIPYYN--KPNRRGLLAHFGEIATTVSSPIYIYN-----NPSRTVI------EMDVDTMAE 150 (292)
Q Consensus 86 --i~~a~~a~~~Gad~i~v~~P~~~--~~~~~~i~~~~~~i~~~~~~pi~iYn-----~P~~~g~------~~~~~~l~~ 150 (292)
T Consensus 133 AY~eQ~~~ve~~Gg~~IlMASRaLA~~A~~pdDY~~VY~~vL~q~~~PVILHWLG~mFDPaL~GYWGs~d~~~A~~t~l~ 212 (382)
T pfam06187 133 AYEEQIEAVEAAGGRVILMASRALARVARSPDDYARVYGRVLAQVDEPVILHWLGDMFDPALAGYWGSDDFDAAMDTVLA 212 (382)
T ss_pred HHHHHHHHHHHCCCEEEEEEHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCHHHHHHHHHH
T ss_conf 99999999997299699973088998738978799999999986379889751211048565056588878999999999
Q ss_pred HHHHCC-HHHHHHCCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHC-CCCCC----CCCCCCCCCHHHHHHHHHCC
Q ss_conf 743203-0233100122113589999735984032013221001243203-34455----22223211002444443117
Q gi|254780276|r 151 LAATYP-NIVGVKDATGKIELVSEQRLSCGFDFIQLSGEDSSALGFNAHG-GVGCI----SVTANVVPRICAEFQQAMIR 224 (292)
Q Consensus 151 L~~~~p-ni~giK~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~G-~~G~i----s~~~n~~P~~~~~l~~~~~~ 224 (292)
T Consensus 213 iI~~~~~kVdGIKiSLLd~~~Ei~lRrrLP~gVr~YTGDDFNY-peLI~GD~~~~S~ALLGiFdaiaPaA-s~Al~aLd~ 290 (382)
T pfam06187 213 IIAAHADKVDGIKISLLDAQKEIALRRRLPDGVRMYTGDDFNY-PELIAGDGQGHSHALLGIFDAIAPAA-SAALQALDA 290 (382)
T ss_pred HHHHCHHHCCCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCC-HHHHCCCCCCCCHHHHHHHHHCCHHH-HHHHHHHHC
T ss_conf 9985755337447740174768999974898645635788775-98716788885188876532021889-999999858
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHCCCCCC
Q ss_conf 88279999999999999998426893---899999998698899
Q gi|254780276|r 225 GDYRQALLYQDKLMPLHQALFMEPAV---CCVKYALSRLGRNVS 265 (292)
Q Consensus 225 gd~~~A~~l~~~l~~l~~~~~~~~~~---~~~K~~l~~~G~~~~ 265 (292)
T Consensus 291 Gd~~~f~~il~pTvpLsRhiF~aPT~~YKtGvvFLAwLnG~Q~h 334 (382)
T pfam06187 291 GDTARFRAILEPTVPLSRHIFRAPTQYYKTGVVFLAWLNGHQDH 334 (382)
T ss_pred CCHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99888998864551545554038722444448999997389854