RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(292 letters)
>gnl|CDD|29943 cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS) is a key
enzyme in lysine biosynthesis. It catalyzes the aldol
condensation of L-aspartate-beta- semialdehyde and
pyruvate to dihydropicolinic acid via a Schiff base
formation between pyruvate and a lysine residue. The
functional enzyme is a homotetramer consisting of a
dimer of dimers. DHDPS is member of dihydrodipicolinate
synthase family that comprises several
pyruvate-dependent class I aldolases that use the same
catalytic step to catalyze different reactions in
different pathways..
Length = 284
Score = 339 bits (872), Expect = 4e-94
Identities = 141/287 (49%), Positives = 181/287 (63%), Gaps = 3/287 (1%)
Query: 2 FRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIE 61
F GSI AL+TPF +D DA IE+QI G+ GLV GTTGES TLS EEH +IE
Sbjct: 1 FGGSITALVTPFKDDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIE 60
Query: 62 LCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGE 121
V+ V RVPV+AG GSNNT E++EL + A GADA LVV PYYNKP++ GL AHF
Sbjct: 61 AVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKA 120
Query: 122 IATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFD 181
IA P+ +YN P RT + ++ +T+ LA +PNIVG+K+ATG ++ VSE C D
Sbjct: 121 IAEATDLPVILYNVPGRTGVNIEPETVLRLAE-HPNIVGIKEATGDLDRVSELIALCPDD 179
Query: 182 FIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLH 241
F LSG+D+ L F A GGVG ISV ANV P++ AE +A + GD +A KL+PL
Sbjct: 180 FAVLSGDDALTLPFLALGGVGVISVAANVAPKLMAEMVRAALAGDLEKARELHRKLLPLI 239
Query: 242 QALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL 288
+ALF EP VK AL+ LG +S +R P+V L ++ + AL
Sbjct: 240 KALFAEPNPIPVKAALALLGL-ISGELRLPLV-PLSEELRAKLRAAL 284
>gnl|CDD|30677 COG0329, DapA, Dihydrodipicolinate synthase/N-acetylneuraminate
lyase [Amino acid transport and metabolism / Cell
envelope biogenesis, outer membrane].
Length = 299
Score = 315 bits (809), Expect = 8e-87
Identities = 134/293 (45%), Positives = 183/293 (62%), Gaps = 2/293 (0%)
Query: 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII 60
F+G IPAL+TPF + +DE+A +E+ I G GLV GTTGES TL+ EE ++
Sbjct: 4 KFKGVIPALVTPFDEDGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVL 63
Query: 61 ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG 120
E V+ V RVPV+AG+GSN+T E++ELA++A +GAD +LVV PYYNKP++ GL AHF
Sbjct: 64 EAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFK 123
Query: 121 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG- 179
IA V P+ +YN PSRT +++ +T+A LA +PNIVGVKD++G ++ + E + G
Sbjct: 124 AIAEAVDLPVILYNIPSRTGVDLSPETIARLAE-HPNIVGVKDSSGDLDRLEEIIAALGD 182
Query: 180 FDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239
DFI LSG+D AL G G ISVTANV P + E +A GD +A QD+L+P
Sbjct: 183 RDFIVLSGDDELALPALLLGADGVISVTANVAPELAVELYRAAKAGDIEEARELQDRLLP 242
Query: 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292
L + LF E +K AL LG VR P+V E++ ++ AL LG
Sbjct: 243 LIRLLFREGNPIPIKAALRLLGLIDGGTVRLPLVPLSEEEREKVLEAALAALG 295
>gnl|CDD|144341 pfam00701, DHDPS, Dihydrodipicolinate synthetase family. This
family has a TIM barrel structure.
Length = 289
Score = 297 bits (762), Expect = 3e-81
Identities = 131/293 (44%), Positives = 180/293 (61%), Gaps = 5/293 (1%)
Query: 1 MFRGSIPALITPF-TKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRI 59
F G I AL+TPF T G +DE+A + IE+ I +G+ GL GTTGES TLS EEH ++
Sbjct: 1 KFEGLITALVTPFDTDGR-LDEEALRKLIEFLINKGADGLFVGGTTGESFTLSTEEHEQL 59
Query: 60 IELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHF 119
IE+ V R+PV+AG GSN+TRE++ LAQ A + GAD +L V PYYNKP++ GL HF
Sbjct: 60 IEITVDEAKGRIPVIAGTGSNSTREAIHLAQLAEAAGADGVLAVTPYYNKPSQEGLYQHF 119
Query: 120 GEIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG 179
IA P+ +YN PSRT ++ +T+ L A PN+VGVKDA G +E + R G
Sbjct: 120 KAIAAATDLPVILYNVPSRTGQDLTPETIERL-AECPNVVGVKDAVGDLERMENIRKRAG 178
Query: 180 FDFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMP 239
DF LSG+D +AL + + G G ISVT+N+ P++ + +A+ GD+ A L +KL+P
Sbjct: 179 PDFTILSGDDETALSYLSLGADGVISVTSNIAPKLMRDIYRALKNGDFATAALLNEKLLP 238
Query: 240 LHQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292
L + LF EP VK AL LG +V R P+ L ++ +D L+ LG
Sbjct: 239 LMKILFAEPNPIPVKTALQLLGLDVG-PCRLPLT-PLSEEEREELDALLKALG 289
>gnl|CDD|29936 cd00408, DHDPS-like, Dihydrodipicolinate synthase family. A member
of the class I aldolases, which use an active-site
lysine which stablilzes a reaction intermediate via
Schiff base formation, and have TIM beta/alpha barrel
fold. The dihydrodipicolinate synthase family comprises
several pyruvate-dependent class I aldolases that use
the same catalytic step to catalyze different reactions
in different pathways and includes such proteins as
N-acetylneuraminate lyase, MosA protein,
5-keto-4-deoxy-glucarate dehydratase,
trans-o-hydroxybenzylidenepyruvate hydratase-aldolase,
trans-2'-carboxybenzalpyruvate hydratase-aldolase, and
2-keto-3-deoxy- gluconate aldolase. The family is also
referred to as the N-acetylneuraminate lyase (NAL)
family..
Length = 281
Score = 289 bits (740), Expect = 9e-79
Identities = 123/283 (43%), Positives = 175/283 (61%), Gaps = 3/283 (1%)
Query: 6 IPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVK 65
IPAL+TPFT +D DA +E+ I G GLV GTTGE+ TL+ EE +IE V+
Sbjct: 2 IPALVTPFTADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVE 61
Query: 66 TVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATT 125
VA RVPV+AG+G+N+TRE++ELA++A GAD +LVV PYYNKP++ G++AHF +A
Sbjct: 62 AVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADA 121
Query: 126 VSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFDFIQL 185
P+ +YN P RT +++ +T+A LA +PNIVG+KD++G ++ ++ G DF L
Sbjct: 122 SDLPVILYNIPGRTGVDLSPETIARLAE-HPNIVGIKDSSGDLDRLTRLIALLGPDFAVL 180
Query: 186 SGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQALF 245
SG+D L A G G IS ANV P++ +A GD +A QD+L+PL +ALF
Sbjct: 181 SGDDDLLLPALALGADGAISGAANVAPKLAVALYEAARAGDLEEARALQDRLLPLIEALF 240
Query: 246 MEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQAL 288
E VK AL+ LG + VR P+V L ++ ++ L
Sbjct: 241 KEGNPAPVKAALALLGLDAG-PVRLPLV-PLSEEERAKLEALL 281
>gnl|CDD|29947 cd00954, NAL, N-Acetylneuraminic acid aldolase, also called
N-acetylneuraminate lyase (NAL), which catalyses the
reversible aldol reaction of N-acetyl-D-mannosamine and
pyruvate to give N-acetyl-D-neuraminic acid (D-sialic
acid). It has a widespread application as biocatalyst
for the synthesis of sialic acid and its derivatives.
This enzyme has been shown to be quite specific for
pyruvate as the donor, but flexible to a variety of D-
and, to some extent, L-hexoses and pentoses as acceptor
substrates. NAL is member of dihydrodipicolinate
synthase family that comprises several
pyruvate-dependent class I aldolases..
Length = 288
Score = 152 bits (386), Expect = 1e-37
Identities = 84/283 (29%), Positives = 134/283 (47%), Gaps = 4/283 (1%)
Query: 3 RGSIPALITPFTKGNLIDEDAFVEHIEWQI-TEGSGGLVPAGTTGESSTLSHEEHCRIIE 61
+G I AL+TPF + I+ED +++ I +G GL G+TGE LS EE +I E
Sbjct: 2 KGLIAALLTPFDENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAE 61
Query: 62 LCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGE 121
+ + +V ++A +GS N +ES ELA++A +G DA+ + P+Y K + + ++ E
Sbjct: 62 IVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYRE 121
Query: 122 I-ATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF 180
I A S P+ IY+ P+ T + + ++ EL PN++GVK + + R +
Sbjct: 122 IIAAAASLPMIIYHIPALTGVNLTLEQFLEL-FEIPNVIGVKFTATDLYDLERIRAASPE 180
Query: 181 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240
D + L+G D L A G G I T NV + + +A GD A Q + +
Sbjct: 181 DKLVLNGFDEMLLSALALGADGAIGSTYNVNGKRYRKIFEAFNAGDIDTARELQHVINDV 240
Query: 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIA 283
L +K L +G + R P+ EK A
Sbjct: 241 ITVLIKNGLYPTLKAILRLMGLDAGP-CRLPLRKVTEKALAKA 282
>gnl|CDD|29944 cd00951, KDGDH, 5-dehydro-4-deoxyglucarate dehydratase, also called
5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is
member of dihydrodipicolinate synthase (DHDPS) family
that comprises several pyruvate-dependent class I
aldolases. The enzyme is involved in glucarate
metabolism, and its mechanism presumbly involves a
Schiff-base intermediate similar to members of DHDPS
family. While in the case of Pseudomonas sp.
5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to
2,5-dioxopentanoate, in certain species of
Enterobacteriaceae it is degraded instead to pyruvate
and glycerate..
Length = 289
Score = 148 bits (375), Expect = 2e-36
Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 12/287 (4%)
Query: 10 ITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVAS 69
+T F DEDA+ H+EW ++ G+ L AG TGE +L+ +E+ +++ V+ A
Sbjct: 9 VTHFDADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAG 68
Query: 70 RVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSP 129
RVPV+AG G T ++ AQ A GAD +L++ PY + + GL AH + +
Sbjct: 69 RVPVLAGAGY-GTATAIAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTDLG 127
Query: 130 IYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGFDFIQLSGED 189
+ +YN R + D++A LA PN+VG KD G IEL+ G + L G
Sbjct: 128 VIVYN---RANAVLTADSLARLAERCPNLVGFKDGVGDIELMRRIVAKLGDRLLYLGGLP 184
Query: 190 SSALGFNAHGGVGCI---SVTANVVPRICAEFQQAMIRGDYRQA-LLYQDKLMPLHQALF 245
++ + A+ +G S N VP I F A+ GD+ L +D +P
Sbjct: 185 TAEVFALAYLAMGVPTYSSAVFNFVPEIALAFYAAVRAGDHATVKRLLRDFFLPYVDIRN 244
Query: 246 MEP--AVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALER 290
AV VK +GR+ VR P+ L ++ + + ++
Sbjct: 245 RRKGYAVSIVKAGARLVGRDAG-PVRPPLTD-LTEEELAQLTALIKT 289
>gnl|CDD|29946 cd00953, KDG_aldolase, KDG (2-keto-3-deoxygluconate) aldolases
found in archaea. This subfamily of enzymes is adapted
for high thermostability and shows specificity for
non-phosphorylated substrates. The enzyme catalyses the
reversible aldol cleavage of 2-keto-3-dexoygluconate to
pyruvate and glyceraldehyde, the third step of a
modified non-phosphorylated Entner-Doudoroff pathway of
glucose oxidation. KDG aldolase shows no significant
sequence similarity to microbial
2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the
enzyme shows no activity with glyceraldehyde 3-phosphate
as substrate. The enzyme is a tetramer and a member of
the DHDPS family of Schiff-base-dependent class I
aldolases..
Length = 279
Score = 98.4 bits (245), Expect = 2e-21
Identities = 67/215 (31%), Positives = 107/215 (49%), Gaps = 10/215 (4%)
Query: 5 SIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCV 64
I +ITPFT GN ID++ F +H E I++G + AGTTG +LS +E +++
Sbjct: 4 KITPVITPFT-GNKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAY- 61
Query: 65 KTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYY-NKPNRRGLLAHFGEIA 123
+ +V +GS N ES+ELA+ A S G A+ + PYY L+ +F +I+
Sbjct: 62 SDITDKVIFQ--VGSLNLEESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDIS 119
Query: 124 TTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKI-ELVSEQRLSCGFDF 182
+ P +IYN P T +++ E+ +I+GVKD I ++ +RL DF
Sbjct: 120 SPY--PTFIYNYPKATGYDINARMAKEIKKAGGDIIGVKDTNEDISHMLEYKRL--VPDF 175
Query: 183 IQLSGEDSSALGFNAHGGVGCISVTANVVPRICAE 217
SG DS G G ++ +N +P + +
Sbjct: 176 KVYSGPDSLIFSALRSGLDGSVAAASNYLPEVFVK 210
>gnl|CDD|29945 cd00952, CHBPH_aldolase, Trans-o-hydroxybenzylidenepyruvate
hydratase-aldolase (HBPHA) and
trans-2'-carboxybenzalpyruvate hydratase-aldolase
(CBPHA). HBPHA catalyzes HBP to salicyaldehyde and
pyruvate. This reaction is part of the degradative
pathways for naphthalene and naphthalenesulfonates by
bacteria. CBPHA is homologous to HBPHA and catalyzes the
cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate
during the degradation of phenanthrene. They are member
of the DHDPS family of Schiff-base-dependent class I
aldolases..
Length = 309
Score = 95.0 bits (236), Expect = 2e-20
Identities = 59/231 (25%), Positives = 95/231 (41%), Gaps = 3/231 (1%)
Query: 17 NLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAG 76
+ +D D +E I G G++ GT GE +TL+ EE + V+TVA RVPV G
Sbjct: 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVG 83
Query: 77 IGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTV-SSPIYIYNN 135
+ NTR+++ + +GAD ++ P + + + + ++A V I IY N
Sbjct: 84 ATTLNTRDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN 143
Query: 136 PSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCG-FDFIQLSGEDSSALG 194
P + AEL A P +V K L+S+ G + L + +A
Sbjct: 144 PEAFKFDFPRAAWAEL-AQIPQVVAAKYLGDIGALLSDLAAVKGRMRLLPLEDDYYAAAR 202
Query: 195 FNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQALF 245
S A P + A+ GD+ A D++ + LF
Sbjct: 203 LFPEEVTAFWSSGAACGPAPVTALRDAVATGDWTDARALTDRMRWAAEPLF 253
>gnl|CDD|29940 cd00945, Aldolase_Class_I, Class I aldolases. The class I aldolases
use an active-site lysine which stablilzes a reaction
intermediates via Schiff base formation, and have TIM
beta/alpha barrel fold. The members of this family
include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and
2-keto-4-hydroxyglutarate (KHG) aldolases,
transaldolase, dihydrodipicolinate synthase sub-family,
Type I 3-dehydroquinate dehydratase, DeoC and DhnA
proteins, and metal-independent
fructose-1,6-bisphosphate aldolase. Although
structurally similar, the class II aldolases use a
different mechanism and are believed to have an
independent evolutionary origin..
Length = 201
Score = 36.5 bits (84), Expect = 0.008
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 10/118 (8%)
Query: 59 IIELCVKTVA-SRVPVMAGIGSNN----TRESVELAQYAHSIGADALLVVIPYYNKP--N 111
+ L +A S VPV+ +G T V + A +GAD + VVI + +
Sbjct: 36 YVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGD 95
Query: 112 RRGLLAHFGEIATTVSS--PIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGK 167
+L + P+ + ++ A +AA +K +TG
Sbjct: 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAE-AGADFIKTSTGF 152
>gnl|CDD|73397 cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN
binding domain, group 4. Each monomer of OYE contains
FMN as a non-covalently bound cofactor, uses NADPH as a
reducing agent with oxygens, quinones, and
alpha,beta-unsaturated aldehydes and ketones, and can
act as electron acceptors in the catalytic reaction.
Other members of OYE family include trimethylamine
dehydrogenase, 2,4-dienoyl-CoA reductase, enoate
reductase, pentaerythriol tetranitrate reductase,
xenobiotic reductase, and morphinone reductase..
Length = 353
Score = 29.8 bits (67), Expect = 1.0
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 54 EEHCRIIELCVKTVASRVPVMAGIGSNNTRESVE--LAQYAHSIGADALLVVIP 105
+++ I+EL + +A R+P++ +GS NT + L A + L+V P
Sbjct: 268 DDNQTIMELVKERIAGRLPLI-AVGSINTPDDALEALETGADLVAIGRGLLVDP 320
>gnl|CDD|88414 cd05710, SIS_1, A subgroup of the SIS domain. SIS (Sugar ISomerase)
domains are found in many phosphosugar isomerases and
phosphosugar binding proteins. SIS domains are also
found in proteins that regulate the expression of genes
involved in synthesis of phosphosugars..
Length = 120
Score = 28.6 bits (64), Expect = 2.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 79 SNNTRESVELAQYAHSIGADALLVVIPYYNKPN 111
S NT+E+V A++A GA VI + +
Sbjct: 57 SGNTKETVAAAKFAKEKGA----TVIGLTDDED 85
>gnl|CDD|73363 cd00331, IGPS, Indole-3-glycerol phosphate synthase (IGPS); an
enzyme in the tryptophan biosynthetic pathway,
catalyzing the ring closure reaction of
1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate
(CdRP) to indole-3-glycerol phosphate (IGP), accompanied
by the release of carbon dioxide and water. IGPS is
active as a separate monomer in most organisms, but is
also found fused to other enzymes as part of a
bifunctional or multifunctional enzyme involved in
tryptophan biosynthesis..
Length = 217
Score = 28.5 bits (64), Expect = 2.4
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 87 ELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVD 146
EL + A +G + L+ V + L E A + + I NN E+D++
Sbjct: 112 ELYELARELGMEVLVEV------HDEEEL-----ERALALGAKIIGINNRDLKTFEVDLN 160
Query: 147 TMAELAATYP 156
T LA P
Sbjct: 161 TTERLAPLIP 170
>gnl|CDD|73402 cd04740, DHOD_1B_like, Dihydroorotate dehydrogenase (DHOD) class 1B
FMN-binding domain. DHOD catalyzes the oxidation of
(S)-dihydroorotate to orotate. This is the fourth step
and the only redox reaction in the de novo biosynthesis
of UMP, the precursor of all pyrimidine nucleotides.
DHOD requires FMN as co-factor. DHOD divides into class
1 and class 2 based on their amino acid sequences and
cellular location. Members of class 1 are cytosolic
enzymes and multimers while class 2 enzymes are membrane
associated and monomeric. The class 1 enzymes can be
further divided into subtypes 1A and 1B which are
homodimers and heterotetrameric proteins, respectively..
Length = 296
Score = 27.8 bits (62), Expect = 4.2
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 59 IIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAH 118
+ EL PV+A I + E VE+A+ GADA+ + I + PN +G
Sbjct: 78 LEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNI---SCPNVKGGGMA 134
Query: 119 FGE 121
FG
Sbjct: 135 FGT 137
>gnl|CDD|31080 COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and
related esterases [Nucleotide transport and metabolism].
Length = 517
Score = 27.4 bits (60), Expect = 4.6
Identities = 26/146 (17%), Positives = 41/146 (28%), Gaps = 16/146 (10%)
Query: 64 VKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPY-------YNKPNRRGLL 116
A P+ L +Y D L VI
Sbjct: 286 TDIKAVARPITDVTAKKEDPAVEALIEYLQEATEDFLSEVIGTTPGQLEGSRALVADTPE 345
Query: 117 AHFGEIATT------VSSPIYIYNN-PSRTVIEMDVDTMAELAATYP--NIVGVKDATGK 167
+ G + + I N RT I T+ ++A YP N + V + TG+
Sbjct: 346 GNLGNLIQDAYTGAAGKADIAFTNGGGIRTDIPAGDITIGDVATVYPFPNTLVVVEVTGE 405
Query: 168 IELVSEQRLSCGFDFIQLSGEDSSAL 193
+ + F+Q G S +
Sbjct: 406 ELKAILENSAGQGGFLQPGGSLSYSF 431
>gnl|CDD|143975 pfam00218, IGPS, Indole-3-glycerol phosphate synthase.
Length = 254
Score = 27.2 bits (61), Expect = 5.1
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIE 142
EL +YA S+G + L+ V N L E A + + + NN + E
Sbjct: 145 ELLEELYEYARSLGMEPLVEVH------NEEEL-----ERALALGAKLIGVNNRNLKTFE 193
Query: 143 MDVDTMAELAATYP 156
+D++T LA P
Sbjct: 194 VDLNTTRRLAPMVP 207
>gnl|CDD|34408 COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase
component (subunits alpha and beta) [Lipid metabolism].
Length = 526
Score = 27.1 bits (60), Expect = 6.6
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 40 VPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99
V GT GE ++ ++ R EL ++ + + G+ LA Y +A
Sbjct: 102 VKGGTLGE---MTAKKILRAQELAIENGLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNA 158
Query: 100 LLV-VIP 105
VIP
Sbjct: 159 RASGVIP 165
>gnl|CDD|88402 cd05005, SIS_PHI, Hexulose-6-phosphate isomerase (PHI). PHI is a
member of the SIS (Sugar ISomerase domain) superfamily.
In the ribulose monophosphate pathway of formaldehyde
fixation, hexulose-6-phosphate synthase catalyzes the
condensation of ribulose-5-phosphate with formadelhyde
to become hexulose-6-phosphate, which is then isomerized
to fructose-6-phosphate by PHI..
Length = 179
Score = 26.7 bits (59), Expect = 6.9
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 73 VMAGIGSNNTRESVELAQYAHSIGADALLV 102
++A GS T V A+ A GA +L+
Sbjct: 79 LIAISGSGETSSVVNAAEKAKKAGAKVVLI 108
>gnl|CDD|31958 COG1772, COG1772, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 178
Score = 26.4 bits (58), Expect = 8.5
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
Query: 107 YNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIEMDVDTMA 149
+KP ++G FGE+ T S P + + + +DV A
Sbjct: 80 IDKP-KKGFPPQFGEVVATTSKP-----DEKKAIKPIDVAEEA 116
>gnl|CDD|133030 cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to
eukaryotic DPM1. A family of bacterial enzymes related
to eukaryotic DPM1; Although the mechanism of eukaryotic
enzyme is well studied, the mechanism of the bacterial
enzymes is not well understood. The eukaryotic DPM1 is
the catalytic subunit of eukaryotic Dolichol-phosphate
mannose (DPM) synthase. DPM synthase is required for
synthesis of the glycosylphosphatidylinositol (GPI)
anchor, N-glycan precursor, protein O-mannose, and
C-mannose. The enzyme has three subunits, DPM1, DPM2 and
DPM3. DPM is synthesized from dolichol phosphate and
GDP-Man on the cytosolic surface of the ER membrane by
DPM synthase and then is flipped onto the luminal side
and used as a donor substrate. This protein family
belongs to Glycosyltransferase 2 superfamily.
Length = 181
Score = 26.7 bits (60), Expect = 8.5
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 14/68 (20%)
Query: 102 VVIPYYNKPNRRGLLAHFGEIATTVSSPIYIY-----NNPSRTVIEMD--VDTMAELAAT 154
+V+P YN L + + + S Y Y ++ S D ++ + ELAA
Sbjct: 1 IVVPVYN--EEENLPELYERLKAVLESLGYDYEIIFVDDGST-----DRTLEILRELAAR 53
Query: 155 YPNIVGVK 162
P + ++
Sbjct: 54 DPRVKVIR 61
>gnl|CDD|30483 COG0134, TrpC, Indole-3-glycerol phosphate synthase [Amino acid
transport and metabolism].
Length = 254
Score = 26.7 bits (59), Expect = 8.7
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 83 RESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFGEIATTVSSPIYIYNNPSRTVIE 142
+ EL AH +G + L+ V N L E A + + I NN T +E
Sbjct: 143 EQLEELVDRAHELGMEVLVEV------HNEEEL-----ERALKLGAKIIGINNRDLTTLE 191
Query: 143 MDVDTMAELAATYP 156
+D++T +LA P
Sbjct: 192 VDLETTEKLAPLIP 205
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.392
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,386,468
Number of extensions: 173443
Number of successful extensions: 431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 28
Length of query: 292
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,254,100
Effective search space: 846565900
Effective search space used: 846565900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)