BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62] (292 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 605 bits (1560), Expect = e-175, Method: Compositional matrix adjust. Identities = 292/292 (100%), Positives = 292/292 (100%) Query: 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII 60 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII Sbjct: 1 MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII 60 Query: 61 ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG 120 ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG Sbjct: 61 ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG 120 Query: 121 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF 180 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF Sbjct: 121 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF 180 Query: 181 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL Sbjct: 181 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240 Query: 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG Sbjct: 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292 >gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str. psy62] Length = 616 Score = 27.3 bits (59), Expect = 0.34, Method: Compositional matrix adjust. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%) Query: 209 NVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ---------------ALFMEPAVCCV 253 N+ +I QA ++ DY A++++D+L L +L+ + C+ Sbjct: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACI 256 Query: 254 KYALSRLGRN 263 + G+N Sbjct: 257 QTCFFHFGQN 266 >gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 465 Score = 25.8 bits (55), Expect = 0.86, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 14/20 (70%) Query: 2 FRGSIPALITPFTKGNLIDE 21 FRG++PA + P +G L D+ Sbjct: 445 FRGNMPAFMLPKNRGKLNDK 464 >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 25.0 bits (53), Expect = 1.5, Method: Compositional matrix adjust. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%) Query: 69 SRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP-------YYNKPNRRGLLAHFG- 120 R + A +GS T + Y H G ++LV+ P + ++ R +H Sbjct: 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 Query: 121 -EIATTVSSPIYIYNNPSRTVIEMDVDTMA----ELAATYPNIVGVKDATGKIE 169 I TV + P+ + ++ + + EL T+P V D + K++ Sbjct: 78 SVITGTVKQRTKVLKTPAVLYV-INFENLGWLVQELKGTWPFATIVVDESTKLK 130 >gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 22.7 bits (47), Expect = 7.9, Method: Compositional matrix adjust. Identities = 9/37 (24%), Positives = 18/37 (48%) Query: 75 AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPN 111 +GI N T++ V L + + + + L+ + P P Sbjct: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171 >gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter asiaticus str. psy62] Length = 459 Score = 22.3 bits (46), Expect = 9.4, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 40 VPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99 + AGT G + ++ +E C I + KT GI S T E + + SIG A Sbjct: 127 LKAGTAG--TMIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESIGTKA 184 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.320 0.135 0.392 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 176,367 Number of Sequences: 1233 Number of extensions: 6949 Number of successful extensions: 14 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 6 length of query: 292 length of database: 328,796 effective HSP length: 73 effective length of query: 219 effective length of database: 238,787 effective search space: 52294353 effective search space used: 52294353 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)