BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (292 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 292

 Score =  605 bits (1560), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 292/292 (100%), Positives = 292/292 (100%)

Query: 1   MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII 60
           MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII
Sbjct: 1   MFRGSIPALITPFTKGNLIDEDAFVEHIEWQITEGSGGLVPAGTTGESSTLSHEEHCRII 60

Query: 61  ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG 120
           ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG
Sbjct: 61  ELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPNRRGLLAHFG 120

Query: 121 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF 180
           EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF
Sbjct: 121 EIATTVSSPIYIYNNPSRTVIEMDVDTMAELAATYPNIVGVKDATGKIELVSEQRLSCGF 180

Query: 181 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240
           DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL
Sbjct: 181 DFIQLSGEDSSALGFNAHGGVGCISVTANVVPRICAEFQQAMIRGDYRQALLYQDKLMPL 240

Query: 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292
           HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG
Sbjct: 241 HQALFMEPAVCCVKYALSRLGRNVSLAVRSPMVSTLEKDTMIAIDQALERLG 292


>gi|255764496|ref|YP_003065012.2| excinuclease ABC subunit C [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 616

 Score = 27.3 bits (59), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 15/70 (21%)

Query: 209 NVVPRICAEFQQAMIRGDYRQALLYQDKLMPLHQ---------------ALFMEPAVCCV 253
           N+  +I     QA ++ DY  A++++D+L  L                 +L+    + C+
Sbjct: 197 NLKEKIARNMNQATLKEDYESAIIHRDRLAALSHIQNHNDSIYNRMDCFSLYHNKNLACI 256

Query: 254 KYALSRLGRN 263
           +      G+N
Sbjct: 257 QTCFFHFGQN 266


>gi|254780382|ref|YP_003064795.1| ATP dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 465

 Score = 25.8 bits (55), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 2   FRGSIPALITPFTKGNLIDE 21
           FRG++PA + P  +G L D+
Sbjct: 445 FRGNMPAFMLPKNRGKLNDK 464


>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
          Length = 458

 Score = 25.0 bits (53), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%)

Query: 69  SRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP-------YYNKPNRRGLLAHFG- 120
            R  + A +GS  T   +    Y H  G  ++LV+ P       + ++  R    +H   
Sbjct: 18  KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77

Query: 121 -EIATTVSSPIYIYNNPSRTVIEMDVDTMA----ELAATYPNIVGVKDATGKIE 169
             I  TV     +   P+   + ++ + +     EL  T+P    V D + K++
Sbjct: 78  SVITGTVKQRTKVLKTPAVLYV-INFENLGWLVQELKGTWPFATIVVDESTKLK 130


>gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 222

 Score = 22.7 bits (47), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 75  AGIGSNNTRESVELAQYAHSIGADALLVVIPYYNKPN 111
           +GI  N T++ V L +  + +  + L+ + P    P 
Sbjct: 135 SGIMPNQTKDFVILCRQKYQLNVEGLMCIPPAMGNPK 171


>gi|254780449|ref|YP_003064862.1| hypothetical protein CLIBASIA_01670 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 459

 Score = 22.3 bits (46), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 40  VPAGTTGESSTLSHEEHCRIIELCVKTVASRVPVMAGIGSNNTRESVELAQYAHSIGADA 99
           + AGT G  + ++ +E C I +   KT         GI S  T E   +   + SIG  A
Sbjct: 127 LKAGTAG--TMIAAKEACTIAQATEKTAKLTALTKEGITSIRTIEGSSVTIKSESIGTKA 184


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,367
Number of Sequences: 1233
Number of extensions: 6949
Number of successful extensions: 14
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 292
length of database: 328,796
effective HSP length: 73
effective length of query: 219
effective length of database: 238,787
effective search space: 52294353
effective search space used: 52294353
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)