HHsearch alignment for GI: 254780277 and conserved domain: COG0417
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair].
Probab=90.96 E-value=1.2 Score=23.41 Aligned_cols=162 Identities=15% Similarity=0.141 Sum_probs=80.2
Q ss_pred HCCCCCCCCCCCCCCCC-----CCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC--
Q ss_conf 66852323322243311-----00124420102577665443455023137443334565001788999974444202--
Q gi|254780277|r 386 TIGSASFKIITDTMDAF-----HSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLTKEILSYLKKFFE-- 458 (976)
Q Consensus 386 ~~~~ia~DtETt~ld~~-----~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~~evl~~L~~lle-- 458 (976)
T Consensus 153 ~l~~la~DiE~~~~~~~~~~~~~d~~~~i~~~~~~~~~~~---~~~~~~~~~~~~----v~~~~~e~e~l~~~~~~i~~~ 225 (792)
T COG0417 153 PLRVLAFDIETLSEPGKFPDGEKDPIIMISYAIEAEGGLI---EVFIYTSGEGFS----VEVVISEAELLERFVELIREY 225 (792)
T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCC---CCCCCCCCCCCC----EEEECCHHHHHHHHHHHHHHC
T ss_conf 8754799503105777889877786269999704677764---443223567763----487258799999999998502
Q ss_pred CCCCHHHHCCCC-HHHHHHH----HCCCCCC-------------------C--CCCHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 221001100321-2378898----6188666-------------------4--210023455431687667724667762
Q gi|254780277|r 459 NEHFLKIGHNIK-YDKLVLH----RYGISMR-------------------G--FEDIMLMSYVLDSGRSSHDIASIAQKW 512 (976)
Q Consensus 459 ~~~i~kIgHN~K-fD~~~L~----~~GI~l~-------------------~--i~DTmlaayLLdp~~~~~~L~~la~~y 512 (976)
T Consensus 226 dPdVI-vgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~~Gr~~iDl~~~~~~~~~~~~~ysl~~v~~~~ 304 (792)
T COG0417 226 DPDVI-VGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQVGRLHIDLYPALRRRPLNLKSYSLEAVSEAL 304 (792)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCEEEEEHHHHHHHCCCCCCCEEHHHHHHHH
T ss_conf 98999-98367777738999999981998511356653200212544557716741066542032355632434677664
Q ss_pred CCCCCCCCCCCCCC--CCCCHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24442233565432--22100000012333322211111245677
Q gi|254780277|r 513 LSYTRKEILKSRKS--SIPIDKISDSQVQEHAIENSNVILQLWLL 555 (976)
Q Consensus 513 L~~~~~e~~~~~k~--~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~ 555 (976)
T Consensus 305 l~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 349 (792)
T COG0417 305 LGEGKREDIPYDSMEEIWPDWADSKLRLLLYNLSDADLVLRILLK 349 (792)
T ss_pred CCCCCHHCCCCCHHHHCCCCCCCCHHHHHHHCCCHHHHHHHHHHH
T ss_conf 133522005620133304235510768888341078899999866