HHsearch alignment for GI: 254780277 and conserved domain: COG0749
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1385.06 Aligned_cols=586 Identities=45% Similarity=0.757 Sum_probs=560.9
Q ss_pred CCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCH
Q ss_conf 50354799999999999986685232332224331100124420102577665443455023137443334565001788
Q gi|254780277|r 367 SYTKIVNTKDIQQWVQKLETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDLSVHTSQDSTGKNTLT 446 (976)
Q Consensus 367 ~y~~I~~~~~L~~li~~L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~~~~~~~d~~~~~~~~ 446 (976)
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~et~~l~~~~~~lvg~s~~~~~---------~~~yi~~~~~------~~~~-- 64 (593)
T COG0749 2 PYGTITDLAVLNAWLTKLNAAANIAFDTETDGLDPHGADLVGLSVASEE---------EAAYIPLLHG------PEQL-- 64 (593)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCEEEEEEECCC---------CCEEEEECCC------HHHH--
T ss_conf 5125667888999999874223310100014567555874678862365---------4236751366------5555--
Q ss_pred HHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHCCCCCCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCC---CCCCCC
Q ss_conf 999974444202221001100321237889861886664-2100234554316876677246677622444---223356
Q gi|254780277|r 447 KEILSYLKKFFENEHFLKIGHNIKYDKLVLHRYGISMRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYT---RKEILK 522 (976)
Q Consensus 447 ~evl~~L~~lle~~~i~kIgHN~KfD~~~L~~~GI~l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~---~~e~~~ 522 (976)
T Consensus 65 -~~~~~l~~~l~~~~~~kv~~~~K~d~~~l~~~Gi~-~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~~~~~~~i~~ 142 (593)
T COG0749 65 -NVLAALKPLLEDEGIKKVGQNLKYDYKVLANLGIE-PGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLETITFEDIAG 142 (593)
T ss_pred -HHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHCCCC-CCCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHC
T ss_conf -14899999863754103213413669999973976-5651789999961486767577789999825877402487632
Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf 54322210000001233332221111124567763222100-01345788607501233221014310058999986434
Q gi|254780277|r 523 SRKSSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVE-KLLHVYERLDKPMIDVVSQMEITGIQIDQDLLKQVSAE 601 (976)
Q Consensus 523 ~~k~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~-~l~~l~~~iE~Pl~~vLa~ME~~Gi~vD~~~L~~l~~~ 601 (976)
T Consensus 143 kg~~~~~~~~~~~~~~~~y~a~~a~~~~~L~~~l~~~l~~~~~L~~l~~~iE~Pl~~VLa~ME~~Gi~vD~~~L~~l~~e 222 (593)
T COG0749 143 KGKKQLTFADVKLEKATEYAAEDADATLRLESILEPELLKTPVLLELYEEIEMPLVRVLARMERNGIKVDVQYLKELSKE 222 (593)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEECHHHHHHHHHH
T ss_conf 54456761001477888878888899999999999876310469999999754089999986862856429999999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 368999999999740345577776566679987420788-7555665453531788776530476279999999878889
Q gi|254780277|r 602 ISKNLLSLEENIYDLSGEKFNLSSPKQLGDILFTKLKFP-SGAKTKTGQWKTTAQDLEQINCGDNPIIKNILEWRQLSKI 680 (976)
Q Consensus 602 l~~~l~~le~~i~~~aG~~FNinSpkQL~~vLf~~LgLp-~~kKTktG~~ST~~~~Le~L~~~~hp~~~~iLeyR~l~KL 680 (976)
T Consensus 223 l~~~l~~le~eiy~laG~~FNi~SPKQL~~ILfeKl~Lp~~~kKtktG~yST~~~vLe~L~~-~h~i~~~iL~~Rql~KL 301 (593)
T COG0749 223 LGCELAELEEEIYELAGEEFNINSPKQLGEILFEKLGLPPGLKKTKTGNYSTDAEVLEKLAD-DHPLPKLILEYRQLAKL 301 (593)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHH
T ss_conf 99999999999999826857899778999998885189855554578997627999998652-48738999999878888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEEEEE
Q ss_conf 88653200111100123334533002221000001333433345563322224302424899489996326544368766
Q gi|254780277|r 681 KSTYADSLPNHINKRTQRVHTFYSLASTMTGRLASLEPNLQNIPIKTDLGQKIRRAFISPPTKKLISADYSQIELRILAH 760 (976)
Q Consensus 681 ~sTY~~~l~~~i~~~dgRIH~~f~q~~t~TGRlSs~~PNlQNiP~r~~~g~~iR~~F~a~~g~~lv~aDySQiElRilA~ 760 (976)
T Consensus 302 ksTY~d~L~~~i~~~t~RIHTsf~Q~~t~TGRLSSsdPNLQNIPiRse~Gr~IR~aFva~~g~~~i~aDYSQIELRilAH 381 (593)
T COG0749 302 KSTYTDGLPKLINPDTGRIHTSFNQTGTATGRLSSSDPNLQNIPIRSEEGRKIRKAFVAEKGYTLISADYSQIELRILAH 381 (593)
T ss_pred HHHHHHCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCEECCCCCEEEEECHHHHHHHHHHH
T ss_conf 77764022875188899327616877777503357999755677677767866640557999868870157999999998
Q ss_pred EEEHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCH
Q ss_conf 51037778734069888999998980999688998888630251356440777035678819998999999999999888
Q gi|254780277|r 761 IAKITPLYQVFENSLDIHRMVAAEIFGVNIEKVSPQMRRHAKTINFSIIYGISPFRLATQLRIPRSEAADYIKRYFHRFP 840 (976)
Q Consensus 761 ls~D~~l~~af~~g~DiH~~tA~~vf~~~~~~vt~~~R~~aK~infgi~YG~~~~~La~~l~is~~eA~~~i~~yf~~~p 840 (976)
T Consensus 382 ls~D~~Ll~AF~~g~DiH~~TA~~vFgv~~~~Vt~e~Rr~AKaINFGiiYG~safgLa~~L~I~~~eA~~~I~~YF~ryp 461 (593)
T COG0749 382 LSQDEGLLRAFTEGEDIHTATAAEVFGVPIEEVTSEQRRKAKAINFGLIYGMSAFGLAQQLGIPRKEAKEYIDRYFERYP 461 (593)
T ss_pred HCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCCEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHCH
T ss_conf 61889999988658637789999994998233899987565530354143451334798749886888999999998686
Q ss_pred HHHHHHHHHHHHHHHCCCEECCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89999999999999849888277876018987588378887787877013456538999999999999999865998189
Q gi|254780277|r 841 GIHEYIEKTKNFVRQNGYVETIFGRRIHYDEINSPKSSIRNINERAAINAPIQGSAADITRRAMISVHKSLEDHKLATKM 920 (976)
Q Consensus 841 ~v~~~~~~~~~~a~~~gyv~T~~GRrr~~p~i~s~~~~~r~~aeR~a~N~~iQGsaAdi~k~am~~i~~~~~~~~~~~~~ 920 (976)
T Consensus 462 gv~~ym~~~~~~ar~~GyV~Tl~gRRry~p~i~s~n~~~R~~aER~AiNaPIQGTAADiiK~AMI~vd~~l~~~~~~~rl 541 (593)
T COG0749 462 GVKEYMERTKEEAREDGYVETLFGRRRYLPDINSSNRVVRAAAERAAINAPIQGTAADIIKLAMIKVDKALKEEKLKARL 541 (593)
T ss_pred HHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 89999999999999749354102660248621017788887888988357674448999999998679998634321456
Q ss_pred EEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCHHHHC
Q ss_conf 99726389995598799999999999965101357444464388833208937819
Q gi|254780277|r 921 LLQIHDELVFEVPEEEITTASQIIVHSMEKACLPKINLRVPLKVNIKVSNNWQEEN 976 (976)
Q Consensus 921 ilqVHDElv~ev~~~~~~~~~~~~~~~Me~~~~~~~~l~VPl~v~~~~G~~W~e~~ 976 (976)
T Consensus 542 lLQVHDELvfEv~~~e~e~~~~~v~~~Me~a~----~L~VPL~vdv~~g~nW~ea~ 593 (593)
T COG0749 542 LLQVHDELVFEVPKEELEEVKKLLKAIMENAV----NLSVPLEVDVGIGKNWDEAH 593 (593)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----CCCCCEEEECCCCCCHHHCC
T ss_conf 77554556411768689999999999998765----04786698617776834139