HHsearch alignment for GI: 254780277 and conserved domain: COG3688
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only].
Probab=95.54 E-value=0.11 Score=30.79 Aligned_cols=106 Identities=24% Similarity=0.316 Sum_probs=63.8
Q ss_pred CEEEEEECCHHHHHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC-CCCHHHHCCHHHHCC
Q ss_conf 7289996626999887426754468988550069999999999999848554798799997274-887132408652166
Q gi|254780277|r 5 NHLFLVDGSSFIYRAFYATPLLSRKHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYP-AVTFRNEIYPDYKAN 83 (976)
Q Consensus 5 ~~~~liDg~~~~~ra~~a~p~~~~~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~-~~tfR~~~~~~YKa~ 83 (976)
T Consensus 3 ~~iLLVDGYNmI-g---aWp~Lk~lkd---~~~LE~AR~~LIe~l~~Y~s-~~g~~iivVFDA~~v~g~~~----~~~~~ 70 (173)
T COG3688 3 MRILLVDGYNMI-G---AWPELKQLKD---RNGLEAARDKLIEALAEYQS-FTGYKIIVVFDAHYVPGVGR----EYKNH 70 (173)
T ss_pred CEEEEECCCHHC-C---CCHHHHHHHH---HCCHHHHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCCCC----CCCCC
T ss_conf 328996162311-5---5677898876---24699999999999987403-05852899987434666343----43356
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCC-CEEEECCCCH
Q ss_conf 79879758864899999999709979956890166589999999984899-4999868701
Q gi|254780277|r 84 RPKIPEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF-AVTIISTDKD 143 (976)
Q Consensus 84 R~~~p~~l~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~-~v~i~s~DkD 143 (976)
T Consensus 71 ~vs---------------------vvyT~~~ETADs~IEr~~~el~~~~t~~V~VaTSD~~ 110 (173)
T COG3688 71 RVS---------------------VVYTKEGETADSFIERYVAELRNAATHQVIVATSDRA 110 (173)
T ss_pred CEE---------------------EEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 369---------------------9980587627899999999973046625999967515