HHsearch alignment for GI: 254780277 and conserved domain: PHA00439
>PHA00439 exonuclease.
Probab=99.97 E-value=1.3e-30 Score=241.83 Aligned_cols=241 Identities=20% Similarity=0.234 Sum_probs=158.6
Q ss_pred CCCCCEEEEEECCHHHHHHHHCCCCCCCCCCCC------EECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHH
Q ss_conf 988972899966269998874267544689885------50069999999999999848554798799997274887132
Q gi|254780277|r 1 MQKENHLFLVDGSSFIYRAFYATPLLSRKHDGL------PVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRN 74 (976)
Q Consensus 1 m~~~~~~~liDg~~~~~ra~~a~p~~~~~~~G~------~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~ 74 (976)
T Consensus 1 ~~-~k~~LLIDaD~lvYka~~aaE~eidwgddv~tl~~d~~ea~~~v~~~i~~i~~~~~a-~~~~~iIl~fsd-~~NFRk 77 (288)
T PHA00439 1 MS-DKGVLVMDGDYLVFQAMAAAEVETDWGEDIWTLECDHAKARQILEDSIKSYKTRKKA-WEDAPIVLAFTD-SVNWRK 77 (288)
T ss_pred CC-CCCEEEEECHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEECC-CCCCCC
T ss_conf 98-676699942099999877605554478987999489999999999999999987444-577878999589-866254
Q ss_pred HCC-HHHHCCCCCC--CHHHHHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCC-CEEEECCCCHHHEECCC
Q ss_conf 408-6521667987--9758864899999999709979956890166589999999984899-49998687012122379
Q gi|254780277|r 75 EIY-PDYKANRPKI--PEMLLPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGF-AVTIISTDKDLMQLVSP 150 (976)
Q Consensus 75 ~~~-~~YKa~R~~~--p~~l~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~-~v~i~s~DkD~~Qlv~~ 150 (976)
T Consensus 78 ~i~~P~YK~nRk~~rKP~g---y~~l~~~~~~~~~y~~i~~p~lEADDviGilat~~~~~g~~~~iivS~DKDm~qiPg~ 154 (288)
T PHA00439 78 ELVDPTYKANRKAKRKPVG---YKKFLEELMEREEWKSILEPGLEGDDVMGIIATNPSLFGADKAVLVSCDKDFKTIPNC 154 (288)
T ss_pred CCCCCCCCCCCCCCCCCCC---HHHHHHHHHHCCCCCEEEECCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCE
T ss_conf 4578550003578888605---9999999862367536974585512013553126654689862898279882308860
Q ss_pred CEEEEECCCCC-EECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHH---HHHHH-----
Q ss_conf 75999667883-5389999888489887877778751874358998776360249989841367899---98645-----
Q gi|254780277|r 151 TTCLYDTVKEE-KIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLEN---ILINA----- 221 (976)
Q Consensus 151 ~v~~~~~~~~~-~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~---i~~~~----- 221 (976)
T Consensus 155 ~~-~~~~~~~~~~~t~~--------~ad~~~~~QtL~GD~tDgy~GvpGiG~ktA~klL~~~~~~~~~~~~~k~g~~kg~ 225 (288)
T PHA00439 155 DF-LWCTTGNILTQTPE--------TADRWHLFQTIKGDSTDGYSGIPGWGPDTAEAFLNNPYIFEQVEKVLKSGKNKGQ 225 (288)
T ss_pred EE-ECCCCCCEEECCHH--------HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHCCCCCCCCC
T ss_conf 55-02687663653765--------6889888886247476897899884889999986374422210000023444554
Q ss_pred -----------------HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf -----------------4200112232200357899976554320356422476
Q gi|254780277|r 222 -----------------SRIKQKKRRENILEYAETARLSRKLVMLRTDVPITIP 258 (976)
Q Consensus 222 -----------------d~i~~~k~~~~l~~~~e~a~ls~~L~tL~~Dvpl~~~ 258 (976)
T Consensus 226 t~~~w~k~~~~~~~~~W~~vv~--~y~k~g~te~dAl~qARlARILR~~dyd~~ 277 (288)
T PHA00439 226 TVTKWVKRAPGDEETLWDCIVS--LGAKAGMTEEDIIKQAQMARILRAEDYDFI 277 (288)
T ss_pred CCCCCCCCCCCCCHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 3110012466542028999999--999859999999999899987054245766