HHsearch alignment for GI: 254780277 and conserved domain: PRK03980
>PRK03980 flap endonuclease-1; Provisional.
Probab=99.87 E-value=8.2e-21 Score=170.38 Aligned_cols=237 Identities=24% Similarity=0.306 Sum_probs=165.5
Q ss_pred CCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCHHHHCCCCCC------------CHHH-----
Q ss_conf 89885500699999999999998485547987999972748871324086521667987------------9758-----
Q gi|254780277|r 29 KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI------------PEML----- 91 (976)
Q Consensus 29 ~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~~YKa~R~~~------------p~~l----- 91 (976)
T Consensus 2 n~~G~~TSHl~G~f~R~~~ll~~g------I~PvfVFDGkpp~~K~~~l~kR~~~r~~a~~~~~~a~~~g~~e~~~k~~~ 75 (295)
T PRK03980 2 DSKGRITSHLSGLFYRTINLLENG------IKPVYVFDGKPPELKAEEIEERRKVREEAEEKYEEAKEEGDLEEARKYAQ 75 (295)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCC------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 989874078879999999999789------98999979989454599999999999999999999997589999999987
Q ss_pred ------HHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHEECCCCEEE----E----EC
Q ss_conf ------864899999999709979956890166589999999984899499986870121223797599----9----66
Q gi|254780277|r 92 ------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----Y----DT 157 (976)
Q Consensus 92 ------~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~DkD~~Qlv~~~v~~----~----~~ 157 (976)
T Consensus 76 r~v~it~~~i~~~k~LL~~~Gipyi~Ap~-EAeaqca~L~~~----g~v~~v~SeD~D~l~~G~~~~lrnl~~~~~~k~~ 150 (295)
T PRK03980 76 RASRLTDEIVEDSKKLLDLMGIPYVQAPS-EGEAQAAYMVKK----GDAWAVASQDYDSLLFGAPRLVRNLTISGKRKLP 150 (295)
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHC----CCEEEEEECCCCHHHCCCHHHHHHCCCCCCCCCC
T ss_conf 62669999999999999986987121872-599999999976----9758997046341211760576420135660245
Q ss_pred CC-------CCEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78-------83538999988848988787777875187435899877636024998984136789998645420011223
Q gi|254780277|r 158 VK-------EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR 230 (976)
Q Consensus 158 ~~-------~~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i~~~~d~i~~~k~~ 230 (976)
T Consensus 151 ~~~~~~~~~~e~i~l~~il~~l~lt~eqfidlcIL~G--cDY~~gI~gIGpk~Alklikk~~~ie~il~~~~~~~~~--- 225 (295)
T PRK03980 151 GKNVYVEVKPELIELEEVLKELGITREQLIDIAILVG--TDYNPGVKGIGPKTALKLIKKHGDLEKVLEAVGEGIDE--- 225 (295)
T ss_pred CCCCCCCCCHHHEEHHHHHHHCCCCHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCC---
T ss_conf 6443212465442399899883999999999998458--88999999842999999999969999999863767788---
Q ss_pred HHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHH-HHHHHHH-----HHHHHHHHH
Q ss_conf 220035789997655432035642247635521267676889986-5323368-----999876531
Q gi|254780277|r 231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF-LKALEFT-----KLINRVATT 291 (976)
Q Consensus 231 ~~l~~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~-~~~lef~-----~ll~rL~~~ 291 (976)
T Consensus 226 ---~~~~~e~r---~lF---~~p~v~-~~~~l~~~~pd~e~l~~fL~~e~~fse~RV~~~i~kl~k~ 282 (295)
T PRK03980 226 ---PVDPEEIR---EFF---LNPPVT-DDYELKWKKPDKEGIIEFLVEEHDFSEDRVEKALERLKKA 282 (295)
T ss_pred ---CCCHHHHH---HHH---CCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf ---99979999---984---799988-8788787999989999998764298999999999999987