HHsearch alignment for GI: 254780277 and conserved domain: PRK03980

>PRK03980 flap endonuclease-1; Provisional.
Probab=99.87  E-value=8.2e-21  Score=170.38  Aligned_cols=237  Identities=24%  Similarity=0.306  Sum_probs=165.5

Q ss_pred             CCCCCEECHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHCCHHHHCCCCCC------------CHHH-----
Q ss_conf             89885500699999999999998485547987999972748871324086521667987------------9758-----
Q gi|254780277|r   29 KHDGLPVNAIAGFCNMLWKLLQNSRKESIASHFAVIFDYPAVTFRNEIYPDYKANRPKI------------PEML-----   91 (976)
Q Consensus        29 ~~~G~~t~ai~gf~~~l~~~i~~~~~~~~~~~~~v~fD~~~~tfR~~~~~~YKa~R~~~------------p~~l-----   91 (976)
T Consensus         2 n~~G~~TSHl~G~f~R~~~ll~~g------I~PvfVFDGkpp~~K~~~l~kR~~~r~~a~~~~~~a~~~g~~e~~~k~~~   75 (295)
T PRK03980          2 DSKGRITSHLSGLFYRTINLLENG------IKPVYVFDGKPPELKAEEIEERRKVREEAEEKYEEAKEEGDLEEARKYAQ   75 (295)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCC------CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             989874078879999999999789------98999979989454599999999999999999999997589999999987


Q ss_pred             ------HHHHHHHHHHHHHCCCCEEEECCEEHHHHHHHHHHHHHHCCCCEEEECCCCHHHEECCCCEEE----E----EC
Q ss_conf             ------864899999999709979956890166589999999984899499986870121223797599----9----66
Q gi|254780277|r   92 ------LPQLPLVRLATQAFGIPAIEIQGFEADDIIATYTYIAEKEGFAVTIISTDKDLMQLVSPTTCL----Y----DT  157 (976)
Q Consensus        92 ------~~q~~~i~~~l~~~gi~~~~~~~~EADDviatla~~~~~~~~~v~i~s~DkD~~Qlv~~~v~~----~----~~  157 (976)
T Consensus        76 r~v~it~~~i~~~k~LL~~~Gipyi~Ap~-EAeaqca~L~~~----g~v~~v~SeD~D~l~~G~~~~lrnl~~~~~~k~~  150 (295)
T PRK03980         76 RASRLTDEIVEDSKKLLDLMGIPYVQAPS-EGEAQAAYMVKK----GDAWAVASQDYDSLLFGAPRLVRNLTISGKRKLP  150 (295)
T ss_pred             HHCCCCHHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHHHHHC----CCEEEEEECCCCHHHCCCHHHHHHCCCCCCCCCC
T ss_conf             62669999999999999986987121872-599999999976----9758997046341211760576420135660245


Q ss_pred             CC-------CCEECHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf             78-------83538999988848988787777875187435899877636024998984136789998645420011223
Q gi|254780277|r  158 VK-------EEKIDIEHVIKKWGIPPEKMVCLQALTGDSIDNIPGIPGIGYKTAALLLQEYGNLENILINASRIKQKKRR  230 (976)
Q Consensus       158 ~~-------~~~~~~~~v~~~~gv~p~~~~d~~al~GD~sDnipGv~GiG~KtA~~ll~~~gsle~i~~~~d~i~~~k~~  230 (976)
T Consensus       151 ~~~~~~~~~~e~i~l~~il~~l~lt~eqfidlcIL~G--cDY~~gI~gIGpk~Alklikk~~~ie~il~~~~~~~~~---  225 (295)
T PRK03980        151 GKNVYVEVKPELIELEEVLKELGITREQLIDIAILVG--TDYNPGVKGIGPKTALKLIKKHGDLEKVLEAVGEGIDE---  225 (295)
T ss_pred             CCCCCCCCCHHHEEHHHHHHHCCCCHHHHHHHHHHCC--CCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCCC---
T ss_conf             6443212465442399899883999999999998458--88999999842999999999969999999863767788---


Q ss_pred             HHHCCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHH-HHHHHHH-----HHHHHHHHH
Q ss_conf             220035789997655432035642247635521267676889986-5323368-----999876531
Q gi|254780277|r  231 ENILEYAETARLSRKLVMLRTDVPITIPLEHLILEDCNGPRLISF-LKALEFT-----KLINRVATT  291 (976)
Q Consensus       231 ~~l~~~~e~a~ls~~L~tL~~Dvpl~~~~~~l~~~~~d~~~l~~~-~~~lef~-----~ll~rL~~~  291 (976)
T Consensus       226 ---~~~~~e~r---~lF---~~p~v~-~~~~l~~~~pd~e~l~~fL~~e~~fse~RV~~~i~kl~k~  282 (295)
T PRK03980        226 ---PVDPEEIR---EFF---LNPPVT-DDYELKWKKPDKEGIIEFLVEEHDFSEDRVEKALERLKKA  282 (295)
T ss_pred             ---CCCHHHHH---HHH---CCCCCC-CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             ---99979999---984---799988-8788787999989999998764298999999999999987