HHsearch alignment for GI: 254780277 and conserved domain: PRK06063
>PRK06063 DNA polymerase III subunit epsilon; Provisional.
Probab=98.66 E-value=4.5e-08 Score=77.47 Aligned_cols=148 Identities=15% Similarity=0.203 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEECCC----C---CCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 685232332224331100124420102577665443455023137----4---433345650017889999744442022
Q gi|254780277|r 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFIDL----S---VHTSQDSTGKNTLTKEILSYLKKFFEN 459 (976)
Q Consensus 387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yip~----~---~~~~~d~~~~~~~~~evl~~L~~lle~ 459 (976)
T Consensus 15 ~~fvvvD~ETTGl~p~~drIieig~v~~~~~g~i~~~~~tlvnP~~dp~~~~IhGIt~~~v~~aP~f~ev~~~l~~~l~g 94 (313)
T PRK06063 15 QGWAVVDVETSGFRPGQARIISVAVLGLDADGNVEQSVVSLLNPGVDPGPTHVHGLTAAMLEGQPQFADIAGELAEVLRG 94 (313)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCCEEEEEEEEEECCCCCCCCEEEECCCHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf 99799997689999989706999999998997888999997591999898434187999981799899999999999789
Q ss_pred CCCHHHHCCCCHHHHHHH----HCCCCCC--CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 210011003212378898----6188666--4210023455431687667724667762244422335654322210000
Q gi|254780277|r 460 EHFLKIGHNIKYDKLVLH----RYGISMR--GFEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKI 533 (976)
Q Consensus 460 ~~i~kIgHN~KfD~~~L~----~~GI~l~--~i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i 533 (976)
T Consensus 95 ~--vlVAHNa~FD~~FL~~e~~r~g~~~p~~~~lcTl~lARr~~~~l~~~kL~tla~~~-Gi~~~--------------- 156 (313)
T PRK06063 95 R--TLVAHNVAFDYSFLAAEAELAGAELPVDQVMCTVELARRLDLGLPNLRLETLAAHW-GVVQQ--------------- 156 (313)
T ss_pred C--EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHC-CCCCC---------------
T ss_conf 9--79996856529999999997399889996676899886544899997478899980-99988---------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00123333222111112456776
Q gi|254780277|r 534 SDSQVQEHAIENSNVILQLWLLL 556 (976)
Q Consensus 534 ~~e~~~~Yaa~Da~~t~~L~~~l 556 (976)
T Consensus 157 ----~~H~Al~DAra~a~il~~~ 175 (313)
T PRK06063 157 ----RPHDALDDARVLAGILAPA 175 (313)
T ss_pred ----CCCCCHHHHHHHHHHHHHH
T ss_conf ----7655067789999998999