HHsearch alignment for GI: 254780277 and conserved domain: PRK06195
>PRK06195 DNA polymerase III subunit epsilon; Validated.
Probab=98.81 E-value=1.3e-08 Score=81.36 Aligned_cols=157 Identities=17% Similarity=0.246 Sum_probs=97.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC---C---CCEECCCC---CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 852323322243311001244201025776654434---5---50231374---43334565001788999974444202
Q gi|254780277|r 388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK---V---ETIFIDLS---VHTSQDSTGKNTLTKEILSYLKKFFE 458 (976)
Q Consensus 388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~---~---~~~yip~~---~~~~~d~~~~~~~~~evl~~L~~lle 458 (976)
T Consensus 2 ~fvviD~ETt~--~~~d~iieIg~v~v~~g~iv~~~~~Li~P~~~~~~p~~i~ihGIt~~~v~~aP~f~ev~~~~~~fi~ 79 (309)
T PRK06195 2 DFVAIDFETAN--EKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWEKIKDYFN 79 (309)
T ss_pred CEEEEEEECCC--CCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 29999978999--9998059999999999999999999989999888874464037799999659999999999999857
Q ss_pred CCCCHHHHCCCCHHHHHHH----HCCCCCCC--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2210011003212378898----61886664--21002345543168766772466776224442233565432221000
Q gi|254780277|r 459 NEHFLKIGHNIKYDKLVLH----RYGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532 (976)
Q Consensus 459 ~~~i~kIgHN~KfD~~~L~----~~GI~l~~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~ 532 (976)
T Consensus 80 ~~--vlVaHNa~FD~~fL~~~~~r~gl~~~~~~~~cTl~LAR~~~p~l~~~kL~~La~~~-gi~~~-------------- 142 (309)
T PRK06195 80 DN--LVIAHNASFDISVLRKTLELYNIPMPDFEYICTMKLAKNFYSNIPNARLNTVNNFL-GYEFK-------------- 142 (309)
T ss_pred CC--EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHH-CCCCC--------------
T ss_conf 99--79995628889999999998499999997774799999865577657888999985-98801--------------
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0001233332221111124567763222100013457
Q gi|254780277|r 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY 569 (976)
Q Consensus 533 i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~ 569 (976)
T Consensus 143 ------hH~Al~DA~A~a~I~~~~~~~~~~~~l~el~ 173 (309)
T PRK06195 143 ------HHDALEDAMACSNILLNISKELNSKSIEEIS 173 (309)
T ss_pred ------CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf ------1685101999999999999981887789997