HHsearch alignment for GI: 254780277 and conserved domain: PRK06195

>PRK06195 DNA polymerase III subunit epsilon; Validated.
Probab=98.81  E-value=1.3e-08  Score=81.36  Aligned_cols=157  Identities=17%  Similarity=0.246  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC---C---CCEECCCC---CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             852323322243311001244201025776654434---5---50231374---43334565001788999974444202
Q gi|254780277|r  388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK---V---ETIFIDLS---VHTSQDSTGKNTLTKEILSYLKKFFE  458 (976)
Q Consensus       388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~---~---~~~yip~~---~~~~~d~~~~~~~~~evl~~L~~lle  458 (976)
T Consensus         2 ~fvviD~ETt~--~~~d~iieIg~v~v~~g~iv~~~~~Li~P~~~~~~p~~i~ihGIt~~~v~~aP~f~ev~~~~~~fi~   79 (309)
T PRK06195          2 DFVAIDFETAN--EKRNSPCSIGIVVVKDGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVQDELEFDKIWEKIKDYFN   79 (309)
T ss_pred             CEEEEEEECCC--CCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCCCCCEEEECCCCHHHHHCCCCHHHHHHHHHHHHC
T ss_conf             29999978999--9998059999999999999999999989999888874464037799999659999999999999857


Q ss_pred             CCCCHHHHCCCCHHHHHHH----HCCCCCCC--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf             2210011003212378898----61886664--21002345543168766772466776224442233565432221000
Q gi|254780277|r  459 NEHFLKIGHNIKYDKLVLH----RYGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK  532 (976)
Q Consensus       459 ~~~i~kIgHN~KfD~~~L~----~~GI~l~~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~  532 (976)
T Consensus        80 ~~--vlVaHNa~FD~~fL~~~~~r~gl~~~~~~~~cTl~LAR~~~p~l~~~kL~~La~~~-gi~~~--------------  142 (309)
T PRK06195         80 DN--LVIAHNASFDISVLRKTLELYNIPMPDFEYICTMKLAKNFYSNIPNARLNTVNNFL-GYEFK--------------  142 (309)
T ss_pred             CC--EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHHH-CCCCC--------------
T ss_conf             99--79995628889999999998499999997774799999865577657888999985-98801--------------


Q ss_pred             HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             0001233332221111124567763222100013457
Q gi|254780277|r  533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVY  569 (976)
Q Consensus       533 i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~  569 (976)
T Consensus       143 ------hH~Al~DA~A~a~I~~~~~~~~~~~~l~el~  173 (309)
T PRK06195        143 ------HHDALEDAMACSNILLNISKELNSKSIEEIS  173 (309)
T ss_pred             ------CCCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf             ------1685101999999999999981887789997