HHsearch alignment for GI: 254780277 and conserved domain: PRK06309

>PRK06309 DNA polymerase III subunit epsilon; Validated.
Probab=99.18  E-value=9.1e-11  Score=97.13  Aligned_cols=167  Identities=13%  Similarity=0.132  Sum_probs=106.9

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCEECCCC----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCC
Q ss_conf             852323322243311001244201025776654434-550231374----433345650017889999744442022210
Q gi|254780277|r  388 GSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFK-VETIFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFENEHF  462 (976)
Q Consensus       388 ~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~-~~~~yip~~----~~~~~d~~~~~~~~~evl~~L~~lle~~~i  462 (976)
T Consensus         3 ~~V~fD~ETTGl~~~~DrIIEiaav~~~~~e~f~~linP~~pIp~~a~~ihGIt~e~v~~~P~~~ev~~~~~~f~~~~~-   81 (232)
T PRK06309          3 ALIFYDTETTGTQIDKDRIIEIAAYNGVTSESFQTYVNPEIPIPAEATKIHGITTSEVASAPKFPEAYQKFREFCGTDN-   81 (232)
T ss_pred             CEEEEEEECCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHCCCC-
T ss_conf             6899971179959999458999989275676899997998969965621038399998059989999999999857998-


Q ss_pred             HHHHCCC-CHHHHHHH----HCCCCCCC--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCC
Q ss_conf             0110032-12378898----61886664--21002345543168766772466776224442233565432221000000
Q gi|254780277|r  463 LKIGHNI-KYDKLVLH----RYGISMRG--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDKISD  535 (976)
Q Consensus       463 ~kIgHN~-KfD~~~L~----~~GI~l~~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~i~~  535 (976)
T Consensus        82 ilVaHN~~~FD~~fL~~e~~r~g~~~~~~~~iDTl~lar~l~P~l~~h~L~~L~~~~-gi~~~-----------------  143 (232)
T PRK06309         82 ILVAHNNDGFDFPLLVKECRRHSLEPLTLRTIDSLKWAQKYRPDLPKHNLQYLRQVY-GFAEN-----------------  143 (232)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH-CCCCC-----------------
T ss_conf             899848965679999999998599867740537999999975897768899999980-99998-----------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             1233332221111124567763222100013457886075
Q gi|254780277|r  536 SQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP  575 (976)
Q Consensus       536 e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~iE~P  575 (976)
T Consensus       144 --~aHrAl~Da~at~~vf~~ll~~~~~~~~~~l~~~~~~~  181 (232)
T PRK06309        144 --QAHRALDDVITLHRVFSALVGDLSPQQVLDLLNESCHP  181 (232)
T ss_pred             --CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCC
T ss_conf             --88885999999999999987216999999998450655