HHsearch alignment for GI: 254780277 and conserved domain: PRK06310
>PRK06310 DNA polymerase III subunit epsilon; Validated.
Probab=99.06 E-value=3.8e-10 Score=92.60 Aligned_cols=182 Identities=16% Similarity=0.248 Sum_probs=111.8
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEC----CCC------CCCCCCCCCCCCCHHHHHHHH
Q ss_conf 9866852323322243311001244201025776654434550231----374------433345650017889999744
Q gi|254780277|r 384 LETIGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTSFKVETIFI----DLS------VHTSQDSTGKNTLTKEILSYL 453 (976)
Q Consensus 384 L~~~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~~~~~~~yi----p~~------~~~~~d~~~~~~~~~evl~~L 453 (976)
T Consensus 4 l~~~~yvv~D~ETTGl~~~~DrIIEI~~vkv~~~~i~~~~--~~linP~~~I~~~~~~ihGIt~emV~d~P~f~ev~~~~ 81 (250)
T PRK06310 4 LKDTEFVCLDCETTGLDVKKDRIIEFAAIRFTFDEVIDSM--EFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQI 81 (250)
T ss_pred CCCCCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEE--EEEECCCCCCCHHHHHHHCCCHHHHHCCCCHHHHHHHH
T ss_conf 6689889997337997999962799999999999886889--99989289799889876154899984699999999999
Q ss_pred HHHHCCCCCHHHHCCCCHHHHHHH----HCCCCCC--C--CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 442022210011003212378898----6188666--4--2100234554316876677246677622444223356543
Q gi|254780277|r 454 KKFFENEHFLKIGHNIKYDKLVLH----RYGISMR--G--FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRK 525 (976)
Q Consensus 454 ~~lle~~~i~kIgHN~KfD~~~L~----~~GI~l~--~--i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k 525 (976)
T Consensus 82 ~~fi~~~~i-lVaHNa~FD~~fL~~e~~r~g~~~~~~~~~~IDTl~lAr~~~-~~~~~~L~~L~~~~-~i~~~------- 151 (250)
T PRK06310 82 KGFFKEGDY-IVGHSVGFDLQVLAQEAERIGETFLSKHYYIIDTLRLAKEYG-DSPNNSLEALAVHF-NVPYD------- 151 (250)
T ss_pred HHHHCCCCE-EEEECHHHHHHHHHHHHHHCCCCCCCCCCCEECHHHHHHHCC-CCCCCHHHHHHHHC-CCCCC-------
T ss_conf 999679999-999384557999999999769986656795784999997567-65456099999970-99998-------
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHCCCCCCCC
Q ss_conf 22210000001233332221111124567763222100013457886075-0123322101431005
Q gi|254780277|r 526 SSIPIDKISDSQVQEHAIENSNVILQLWLLLRPKLIVEKLLHVYERLDKP-MIDVVSQMEITGIQID 591 (976)
Q Consensus 526 ~~~~~~~i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~~l~~l~~~iE~P-l~~vLa~ME~~Gi~vD 591 (976)
T Consensus 152 ------------~aHrAl~Da~aTa~vf~~l~~r~~~--~e~~~~i~~~p~~~~~f~FGKhKGk~v~ 204 (250)
T PRK06310 152 ------------GNHRAMKDVEININVFKHLCKRFRT--LEQLKQVLSKPIKMKYMPLGKHKGRLFS 204 (250)
T ss_pred ------------CCCCHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHCCCCCCCEECCCCCCCEEHH
T ss_conf ------------6668199999999999999985537--9999998619463420057784988899