HHsearch alignment for GI: 254780277 and conserved domain: PRK06807
>PRK06807 DNA polymerase III subunit epsilon; Validated.
Probab=99.01 E-value=7.4e-10 Score=90.46 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=104.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CC---CCCEECCCC----CCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 68523233222433110012442010257766544-34---550231374----43334565001788999974444202
Q gi|254780277|r 387 IGSASFKIITDTMDAFHSKPIAIAISTLDQKDDTS-FK---VETIFIDLS----VHTSQDSTGKNTLTKEILSYLKKFFE 458 (976)
Q Consensus 387 ~~~ia~DtETt~ld~~~~~ivGisls~~~~~~~~~-~~---~~~~yip~~----~~~~~d~~~~~~~~~evl~~L~~lle 458 (976)
T Consensus 8 ~~fVV~DiETTGl~p~~D~IIEIgAVkv~ng~Ivd~f~tLInP~~~Ip~~It~ItGIT~emV~dAP~f~EVl~~f~~Fi~ 87 (313)
T PRK06807 8 LDYVVIDFETTGFNPYNDKIIQVAAVKYRNHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLFLAFLH 87 (313)
T ss_pred CCEEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 87899997889979999878999999999997989999998948979966765339799998269989999999998738
Q ss_pred CCCCHHHHCCCCHHHHHHH----HCCCC-CCC-CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2210011003212378898----61886-664-21002345543168766772466776224442233565432221000
Q gi|254780277|r 459 NEHFLKIGHNIKYDKLVLH----RYGIS-MRG-FEDIMLMSYVLDSGRSSHDIASIAQKWLSYTRKEILKSRKSSIPIDK 532 (976)
Q Consensus 459 ~~~i~kIgHN~KfD~~~L~----~~GI~-l~~-i~DTmlaayLLdp~~~~~~L~~la~~yL~~~~~e~~~~~k~~~~~~~ 532 (976)
T Consensus 88 d~--iLVAHNA~FD~~FL~~~L~r~gl~~~~n~~IDTL~LAR~l~P~L~NhKLnTVa~~-LgI~l--------------- 149 (313)
T PRK06807 88 TN--VIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRM-LGIRL--------------- 149 (313)
T ss_pred CC--EEEEECCHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHCCCCCCCCHHHHHHH-HCCCC---------------
T ss_conf 99--8999553661999999999749988899877659999986478765667899998-39983---------------
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0001233332221111124567763222100
Q gi|254780277|r 533 ISDSQVQEHAIENSNVILQLWLLLRPKLIVE 563 (976)
Q Consensus 533 i~~e~~~~Yaa~Da~~t~~L~~~l~~~L~~~ 563 (976)
T Consensus 150 -----~HHrAldDA~acAeI~~k~~~~~~~~ 175 (313)
T PRK06807 150 -----SSHNAFDDCITCAAVYQKCASIEEEA 175 (313)
T ss_pred -----CCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----43671778999999999999988616